ID:

nve-mir-2041b-1

 Coordinate:

scaffold_8:1901218-1901285 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-70.5
mature
  1. scaffold_2889:10677-10698 +
  2. scaffold_1856:10114-10135 +
  3. scaffold_1384:11668-11689 +
  4. scaffold_903:38035-38056 +
  5. scaffold_529:49896-49917 +
  6. scaffold_522:85316-85337 +
  7. scaffold_445:146045-146066 +
  8. scaffold_230:59340-59361 +
  9. scaffold_156:72124-72145 +
  10. scaffold_156:176983-177004 +
  11. scaffold_148:80174-80195 +
  12. scaffold_137:547826-547847 +
  13. scaffold_115:47684-47705 +
  14. scaffold_94:742368-742389 +
  15. scaffold_55:86137-86158 +
  16. scaffold_22:48784-48805 +
  17. scaffold_15:555327-555348 -
  18. scaffold_6:2098123-2098144 +
  19. scaffold_2:1728355-1728376 +
  20. scaffold_2:2197678-2197699 +
  21. scaffold_36:934817-934838 -
  22. scaffold_154:73660-73681 -
  23. scaffold_8:1901219-1901240 -
  24. scaffold_708:42681-42702 -
  25. scaffold_708:44413-44434 -
  26. scaffold_470:14865-14886 -
  27. scaffold_292:184250-184271 -
  28. scaffold_169:142501-142522 -
  29. scaffold_161:95226-95247 -
  30. scaffold_108:300286-300307 -
  31. scaffold_104:170286-170307 -
  32. scaffold_94:741306-741327 -
  33. scaffold_74:859962-859983 -
  34. scaffold_34:473970-473991 -
  35. scaffold_17:1404537-1404558 -
  36. scaffold_15:446503-446524 -
  37. scaffold_8:745166-745187 -
  38. scaffold_2:1727121-1727142 -
  39. scaffold_1:871388-871409 -
  40. scaffold_8663:3359-3380 -
  41. scaffold_550:67062-67083 -
  42. scaffold_448:105826-105847 -
  43. scaffold_88:93561-93582 -
star

Sense Strand Reads

GCCTTGACCACACCACTCAGGCCGCACGCGCTAACAAACTCATCCTCGGAAACCCAGGGGTATTTTCCTCTAGCGTTTCGATCGGGAGTAACACGTTAGAGGAAAATACCCCTGGGTTTCCGAGGATGTAACAAACTCTCTCAAACCGGACAAGGGCTTACCTAAGCT
***********************************.....(((((((((((((((((((((((((((((((((((((((......)))....)))))))))))))))))))))))))))))))))))).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039756
"Gastrula, untreated"		 SRR039758
"Early planula, untreated"		 SRR039762
"Metamorphosing individuals, untreated"		 SRR039760
"Late planula, untreated"		 SRR039755
"Adult males, oxidized"		 SRR039763
"Metamorphosing individuals, oxidized"		 SRR039761
"Late planula, oxidized"		 SRR039759
"Early planula, oxidized"		 SRR039757
"Gastrula, oxidized"		 SRR039754
"Adult males, untreated"		 SRR039731
"Adult females, untreated"		 SRR039764
"Primary polyps, untreated"		 SRR039765
"Primary polyps, oxidized"
...............................................................................................TTAGAGGAAAATACCCCTGGGT................................................... 22 0 20 3.35 67 0 0 14 27 3 0 11 0 10 0 2 0 0
..............................................................................................GTTAGAGGAAAATACCCCTGGG.................................................... 22 0 20 2.25 45 0 0 0 0 23 22 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAAAATACCCCTGGG.................................................... 21 0 20 1.90 38 0 32 6 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAAAATACCCCTGGGA................................................... 22 1 20 1.45 29 21 2 5 0 0 0 0 0 1 0 0 0 0
...............................................................................................TTAGAGGAAAATACCCCTGG..................................................... 20 0 20 0.80 16 16 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAAAATACCCCTGGGTT.................................................. 23 0 20 0.65 13 10 0 0 0 0 0 0 3 0 0 0 0 0
...............................................................................................TTAGAGGAAAATACCCCTGGA.................................................... 21 1 20 0.60 12 0 2 6 2 0 0 0 0 0 0 2 0 0
......................................................CCGGGGTCTTTTTCTCTAGCGT............................................................................................ 22 3 6 0.33 2 0 0 0 0 0 0 0 2 0 0 0 0 0
..............................................................................................GTTAGAGGAAAATACCCCTGG..................................................... 21 0 20 0.25 5 0 2 0 0 0 0 2 0 0 1 0 0 0
..............................................................................................GTTAGAGGAAAATACCCCTGGGA................................................... 23 1 20 0.20 4 1 2 0 0 0 0 0 0 0 0 0 0 1
...............................................................................................TTGGAGGAAAATACCCCTGGGT................................................... 22 1 20 0.20 4 1 0 0 0 0 0 0 0 0 0 0 0 3
...............................................................................................TTAGAGGAAAATACCCCTGGGC................................................... 22 1 20 0.15 3 2 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................GTTGGAGGAAAATACCCCTGGG.................................................... 22 1 20 0.15 3 0 0 0 0 1 0 2 0 0 0 0 0 0
..............................................................................................GTTGGAGGAAAATACCCCTGG..................................................... 21 1 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................GTTAGAGGAAAATACCCCTT...................................................... 20 1 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAAAATACCCCTGGGTA.................................................. 23 1 20 0.10 2 1 0 0 0 0 0 0 0 0 1 0 0 0
................................................................................................TAGAGGAAAATACCCCTGCG.................................................... 20 1 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAAAATACCCCTCG..................................................... 20 1 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 2 0
..............................................................................................GTTAGAGGAAAATACCCCTGGC.................................................... 22 1 20 0.10 2 0 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................GTTAGAGGAAAATACCCCTGGGTT.................................................. 24 0 20 0.10 2 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAAAATACCCCTGGGAAT................................................. 24 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................GATAGAGGAAAATACCCCTGGC.................................................... 22 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGTCAAATACCCCTGG..................................................... 20 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAAAATACCCCTTG..................................................... 20 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................GTTAGGGGAAAATACCCCTGGG.................................................... 22 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................GTTAGCGGAAAATACCCCTGGG.................................................... 22 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................GGTAGAGGAAAAGACCCCTGGG.................................................... 22 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................TTAGAGGAAGATACCCCTGG..................................................... 20 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................GTTAGAGGAAAATACCCCTGGA.................................................... 22 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................GTTAGAGGAAATTACCCCTT...................................................... 20 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TAGAGGAAAATACCCCTGG..................................................... 19 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAAAATACCCCTT...................................................... 19 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................AGAGGAAAATACCCCTGGGT................................................... 20 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................GTTAGAGGAAAATACCCCTG...................................................... 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................GTTAGAGGAAAATACCCCTGCC.................................................... 22 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................GTTAGAGGAAAATACCCCTGGGT................................................... 23 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................GTTAGAGGAAAATACCCCAGGG.................................................... 22 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................TTAGCGGAACATACCCCTGGGT................................................... 22 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAAAATACTCCTGGGAA.................................................. 23 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................GTTAGAGGACAATACCCCTGGG.................................................... 22 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................TTGGAGGAAAATACCCCTGGGA................................................... 22 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................GTTCGAGGAAAATACCCCTGGG.................................................... 22 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................TAGAGGAAAATACCCCTGGGAT.................................................. 22 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................TTAGAGGAAAATACCCCTGGC.................................................... 21 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGGGGAAAATACCCCTGGGTG.................................................. 23 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTACAGGAAAATACCCCTGGG.................................................... 21 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................GTTAGAGGAAGATACCCCTGGG.................................................... 22 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................TTAGAGGAAACTACCCCTGGG.................................................... 21 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................AGAGGAAAATACCCCTGGAT................................................... 20 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................TTAGAGGAAAATCCCCCTGG..................................................... 20 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAGAATACCCCTGGGTT.................................................. 23 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................GGTAGAGGAAAATACCCCTGGG.................................................... 22 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...............................................................................................TTAGAGGAAAATACCCCCGG..................................................... 20 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGGCAAATACCCCTGGGT................................................... 22 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................GTTAGAGGAAATTACCCCTGGG.................................................... 22 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................TTAGCGGAAAATACCCCTGGGT................................................... 22 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................TTAGAGGAAAATACCCCTG...................................................... 19 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAAAATACCCCTGGGTTA................................................. 24 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAAAATACACCTGGGC................................................... 22 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

CGGAACTGGTGTGGTGAGTCCGGCGTGCGCGATTGTTTGAGTAGGAGCCTTTGGGTCCCCATAAAAGGAGATCGCAAAGCTAGCCCTCATTGTGCAATCTCCTTTTATGGGGACCCAAAGGCTCCTACATTGTTTGAGAGAGTTTGGCCTGTTCCCGAATGGATTCGA
***********************************.....(((((((((((((((((((((((((((((((((((((((......)))....)))))))))))))))))))))))))))))))))))).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039756
"Gastrula, untreated"		 SRR039760
"Late planula, untreated"		 SRR039765
"Primary polyps, oxidized"		 SRR039758
"Early planula, untreated"		 SRR039762
"Metamorphosing individuals, untreated"		 SRR039764
"Primary polyps, untreated"		 SRR039763
"Metamorphosing individuals, oxidized"		 SRR039757
"Gastrula, oxidized"		 SRR039731
"Adult females, untreated"
....................................................GGGTCCCCATAAAAGGAGATCG.............................................................................................. 22 0 2 1.50 3 0 0 1 1 0 0 1 0 0
.....................................................GGTCCCCATAAAAGGAGATC............................................................................................... 20 0 2 1.50 3 0 1 0 0 1 1 0 0 0
...................................................TGGGTACCCATAAGAGGAGATC............................................................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0
...................................................TGGGTCCCCATAAAAGGAGAT................................................................................................ 21 0 20 0.35 7 1 1 1 1 0 0 0 3 0
...................................................TGGGTCACCATAAAAGGAGATC............................................................................................... 22 1 5 0.20 1 1 0 0 0 0 0 0 0 0
.....................................................GGTCCCCATAAAAGGAGAT................................................................................................ 19 0 20 0.15 3 1 0 0 2 0 0 0 0 0
....................................................GGGTCCCCATAAAAGGAGAT................................................................................................ 20 0 20 0.15 3 1 0 0 0 0 1 0 0 1
.....................GGCGTTCGCGATTGT.................................................................................................................................... 15 1 8 0.13 1 0 1 0 0 0 0 0 0 0
....................................................AGGTCCCCATAAAAGGAGAT................................................................................................ 20 1 20 0.05 1 0 0 0 0 1 0 0 0 0
....................................................GGGTCCCCATAAAAGGAGGTGG.............................................................................................. 22 2 20 0.05 1 0 0 1 0 0 0 0 0 0
..................................................TTGGGTCCCCCTAAAAGGAGGT................................................................................................ 22 2 20 0.05 1 1 0 0 0 0 0 0 0 0
....................................................GGGTCCCCATAAAAGGAGA................................................................................................. 19 0 20 0.05 1 0 1 0 0 0 0 0 0 0
.....................................................GGTCCCCATAAAAGGAGGT................................................................................................ 19 1 20 0.05 1 0 0 0 0 1 0 0 0 0
............................................................................................TGCAATCTCATTTTATGGGGAC...................................................... 22 1 20 0.05 1 0 0 1 0 0 0 0 0 0
...................................................TCGGTCCCCATAAAAGGAGAT................................................................................................ 21 1 20 0.05 1 0 1 0 0 0 0 0 0 0
....................................................GGGTCCCCATAAAAGGAGATAG.............................................................................................. 22 1 20 0.05 1 1 0 0 0 0 0 0 0 0

Generated: 08/21/2014 at 10:45 AM