ID:

nve-mir-2041

 Coordinate:

scaffold_19:418369-418456 -

 Confidence:

Known

 Type:

Unknown

 [View on miRBase]
[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

mature
  1. scaffold_19:418388-418409 -
  2. scaffold_19:420122-420143 -
star

Sense Strand Reads

TGTggTtgTgggggGgGGGTTGgGTGTTGTTGTTTTGggttgTgGtTtGCATCCTCGGAAACCCAGGGGTATTTTGCTCTTACGTTTCACTCGCGAGTGAAACGTTAGAGCAAAATACTCCTGGGTTTCCGAGGATGtgTgGtTtGGttTGtgGGtGtGtTgtTGTTtttTttgTgtGGtGttttttt
*******************************************************(((((((((((((((((((((((((.((((((((((....)))))))))).)))))))))))))))))))))))))...****************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039731
"Adult females, untreated"		 SRR039754
"Adult males, untreated"		 SRR039764
"Primary polyps, untreated"		 SRR039732
"Adult females, oxidized"		 SRR039765
"Primary polyps, oxidized"		 SRR039762
"Metamorphosing individuals, untreated"		 SRR039755
"Adult males, oxidized"		 SRR039726
"Blastula, untreated"		 SRR039728
"Unfertilized eggs, oxidized"		 SRR039758
"Early planula, untreated"		 SRR039761
"Late planula, oxidized"
.................................................................................................TGAAACGTTAGAGCAAAATACT..................................................................... 22 0 2 7.50 15 7 5 1 0 0 1 1 0 0 0 0
......................................................................ATTTTGCTCTTACGTTTCACT................................................................................................. 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
.....................................................................ATTTTTGCTCTTACGTTTCACT................................................................................................. 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...........................................................................GCTCTTACGTTTCACTCGCA............................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................TTTTTGCTCTTACGTTTCACT................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................TGCTCTTACGTTTCACTCGCGAGT.......................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................TGAAACGTTAGTGCAAAATATT..................................................................... 22 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................AAACGTTAGAGCAAAATACTCCT.................................................................. 23 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................TGCTCTTACGTTTCACTCGCGATTAT........................................................................................ 26 3 4 0.50 2 2 0 0 0 0 0 0 0 0 0 0
..............................................................................................................CAAAATACTCCTGGGTTTCT.......................................................... 20 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................AAACGTTAGAGCAAAATACTCT................................................................... 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................TGAAACGTTAGAGCAAAATAT...................................................................... 21 1 20 0.30 6 3 0 2 0 0 0 0 1 0 0 0
.................................................................................................TGAAACGTTAGAGCAAAATAAT..................................................................... 22 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................TGAAACGTTAGAGCAAAATACTA.................................................................... 23 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................TGAAAAGTTAGAGTAAAATACT..................................................................... 22 2 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................AAACGTTAGAGCAAAATACTTT................................................................... 22 2 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................TGAAACGTTAGAGCAAAATA....................................................................... 20 0 20 0.15 3 0 2 0 0 0 0 0 0 1 0 0
.................................................................................................TGAAACGTTAGAGCAAAATTT...................................................................... 21 2 20 0.15 3 0 2 1 0 0 0 0 0 0 0 0
.................................................................................................TGAAACGTTAGAGCAATTT........................................................................ 19 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................TGAAACCTTAGAGCAAAATTT...................................................................... 21 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................TGAAACGTTTCAGCAAAATAC...................................................................... 21 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................TGAAACGTTAGAGCAAAATAC...................................................................... 21 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................TTAAACGTTAGAGCAAAATAC...................................................................... 21 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
...................................................................................................AAACGTTAGAGCAAAATT....................................................................... 18 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................CGAGTGAAACGTTAGAGCA............................................................................ 19 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................TGAAACGTGAGAGCAAATTT....................................................................... 20 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................GGAATGACGGAGTGATG.......................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

ACAggAtgAgggggCgCCCAACgCACAACAACAAAACggttgAgCtAtCGTAGGAGCCTTTGGGTCCCCATAAAACGAGAATGCAAAGTGAGCGCTCACTTTGCAATCTCGTTTTATGAGGACCCAAAGGCTCCTACtgAgCtAtCCttACtgCCtCtCtAgtACAAtttAttgAgtCCtCttttttt
******************************************************(((((((((((((((((((((((((.((((((((((....)))))))))).)))))))))))))))))))))))))...******************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR039755
"Adult males, oxidized"		 SRR039763
"Metamorphosing individuals, oxidized"		 SRR039764
"Primary polyps, untreated"
............................................................................................................................................................................TGAGTCCTCTTTTTT. 15 0 5 0.20 1 1 0 0
..........................................AGCTATCCTAGCAGCCT................................................................................................................................. 17 2 6 0.17 1 0 1 0
.......................................................GCCTTGGGGTCCCCATAAAAC................................................................................................................ 21 1 20 0.05 1 0 0 1

Generated: 08/21/2014 at 09:34 AM