ID:

nve-mir-2040b

 Coordinate:

scaffold_82:49687-49778 +

 Confidence:

Known

 Type:

Unknown

 [View on miRBase]
[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

mature
  1. scaffold_596:56622-56644 +
  2. scaffold_82:49738-49760 +
star
  1. scaffold_596:56591-56613 +
  2. scaffold_82:49707-49729 +

Sense Strand Reads

CGCTGCGGAGTGAGGAGTCCTACACTTCTGGTTCTCGGACGTGAGGGAGGAGATCATGATACCTACCACCTTCAGGTCAGCTACGACACGAGCGCTCCTCGTTCGTCTCGTAACTGCCCTGAAGGTGGTCCTGGCGTCTTTACCAATACGGTGTGTGTCTCTCCGAGAACCCTGGGCTGGAGGCCCTTATGA
*******************************************************..(((.((.((((((((((((.(((.(((((.(((((((.....))))))).))))).))).))))))))))))...)).))).***************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039754
"Adult males, untreated"		 SRR039755
"Adult males, oxidized"		 SRR039758
"Early planula, untreated"		 SRR039760
"Late planula, untreated"		 SRR039759
"Early planula, oxidized"		 SRR039756
"Gastrula, untreated"		 SRR039731
"Adult females, untreated"		 SRR039763
"Metamorphosing individuals, oxidized"		 SRR039765
"Primary polyps, oxidized"		 SRR039762
"Metamorphosing individuals, untreated"		 SRR039761
"Late planula, oxidized"		 SRR039764
"Primary polyps, untreated"		 SRR039732
"Adult females, oxidized"		 SRR039726
"Blastula, untreated"		 SRR039757
"Gastrula, oxidized"		 SRR039727
"Unfertilized eggs, untreated"		 SRR039729
"Blastula, oxidized"		 SRR039728
"Unfertilized eggs, oxidized"
.....................................................................................................TTCGTCTCGTAACTGCCCTGAAG.................................................................... 23 0 2 97.00 194 100 55 3 5 6 1 3 2 6 2 3 2 3 1 0 1 0 1
......................................................................TTCAGGTCAGCTACGACACGAGC................................................................................................... 23 0 2 38.00 76 18 22 5 6 6 0 0 5 2 3 4 2 2 0 1 0 0 0
.......................................................................TCAGGTCAGCTACGACACGA..................................................................................................... 20 0 2 31.00 62 22 0 12 5 0 4 9 0 0 5 0 3 0 1 0 1 0 0
.....................................................................................................TTCGTCTCGTAACTGCCCTGA...................................................................... 21 0 2 25.00 50 18 13 1 1 1 1 1 4 3 1 0 3 2 1 0 0 0 0
......................................................................TTCAGGTCAGCTACGACACGAG.................................................................................................... 22 0 2 21.00 42 14 3 3 5 5 0 0 3 4 2 2 1 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAACTGCCCTGAA..................................................................... 22 0 2 17.50 35 14 6 2 3 2 4 0 1 1 1 0 1 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAACTGCCCTGAAT.................................................................... 23 1 2 16.00 32 13 6 1 3 4 2 1 0 1 0 1 0 0 0 0 0 0 0
.......................................................................TCAGGTCAGCTACGACACGAGCG.................................................................................................. 23 0 2 16.00 32 13 3 2 8 1 3 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................TTCAGGTCAGCTACGACACGA..................................................................................................... 21 0 2 12.00 24 14 2 3 0 0 1 2 0 1 0 0 1 0 0 0 0 0 0
.......................................................................TCAGGTCAGCTACGACACGAGC................................................................................................... 22 0 2 10.50 21 4 3 3 2 2 2 0 2 1 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................TGTGTCTCTCCGAGAACCCTGGG................ 23 0 2 7.00 14 1 1 3 1 1 1 0 0 0 0 0 0 1 3 0 0 1 1
.......................................................................TCAGGTCAGCTACGACACGAG.................................................................................................... 21 0 2 7.00 14 6 1 1 1 0 0 2 0 0 1 0 1 0 0 0 1 0 0
........................................................................CAGGTCAGCTACGACACGAGCG.................................................................................................. 22 0 2 4.00 8 0 0 2 3 1 2 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAACTGCCCTGAAGA................................................................... 24 1 2 4.00 8 1 2 1 1 0 0 0 1 0 0 0 0 1 0 0 0 1 0
.........................................................................................................................................................TGTGTCTCTCCGAGAACCCTGGGCTGGAG.......... 29 0 2 4.00 8 1 1 0 0 1 0 0 0 1 0 0 0 1 1 0 0 1 1
........................................................................CAGGTCAGCTACGACACGAGC................................................................................................... 21 0 2 3.50 7 2 0 0 0 1 2 0 1 0 0 0 1 0 0 0 0 0 0
......................................................................................................TCGTCTCGTAACTGCCCTGAAGG................................................................... 23 0 2 3.50 7 2 1 1 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTGACTGCCCTGAAG.................................................................... 23 1 2 3.00 6 3 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TTCAGGTCAGCTACGACACGAGA................................................................................................... 23 1 2 3.00 6 2 0 0 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TACGGTGTGTGTCTCTCCGAGAACCCTGG................. 29 0 2 3.00 6 2 0 0 0 0 1 0 0 0 0 0 0 2 0 0 1 0 0
........................................................................................................GTCTCGTAACTGCCCTGAAG.................................................................... 20 0 4 2.50 10 0 0 0 3 1 0 0 0 0 3 3 0 0 0 0 0 0 0
........................................................................CAGGTCAGCTACGACACGAG.................................................................................................... 20 0 2 2.50 5 1 0 1 1 0 0 0 0 0 0 0 2 0 0 0 0 0 0
......................................................................................................TCGTCTCGTAACTGCCCTGAAG.................................................................... 22 0 2 2.50 5 1 1 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................TGTGTCTCTCCGAGAACCCTGGGCTGGA........... 28 0 2 2.00 4 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 1 0
.....................................................................................................TTCGTCTCGTAACTGCCCTGAATT................................................................... 24 2 2 2.00 4 2 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAACTGCCCTGAAGTA.................................................................. 25 2 2 2.00 4 0 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAACTGCC.......................................................................... 17 0 2 2.00 4 1 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAACTGCCCTGAAGGA.................................................................. 25 1 2 2.00 4 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................CAGGTCAGCTACGACACGA..................................................................................................... 19 0 2 2.00 4 0 0 3 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAACTGCCCTGAAGG................................................................... 24 0 2 2.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TTTACCAATACGGTGTGTGTCTCTCCGAGA........................ 30 0 3 1.67 5 0 0 1 0 1 0 0 1 0 1 1 0 0 0 0 0 0 0
...........................................................................................................................................TTACCAATACGGTGTGTGTCTCTCCGAGA........................ 29 0 3 1.67 5 0 0 0 0 0 0 0 0 1 1 1 0 0 1 1 0 0 0
.........................................................................................................................................................TGTGTCTCTCCGAGAACCCTGGGCTG............. 26 0 2 1.50 3 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAACTGCCCTG....................................................................... 20 0 2 1.50 3 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCTTCTCGTAACTGCCCTGAAG.................................................................... 23 1 2 1.50 3 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TCGTCTCGTAACTGCCCTGAA..................................................................... 21 0 2 1.50 3 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAACTGCCCT........................................................................ 19 0 2 1.50 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................TCTCCGAGAACCCTGGGCTGGAGGC........ 25 0 2 1.50 3 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 0 0
.......................................................................TCAGGTCAGCTACGACACGAGCT.................................................................................................. 23 1 2 1.50 3 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TCAGGGCAGCTACGACACGA..................................................................................................... 20 1 2 1.50 3 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................TACCAATACGGTGTGTGTCTCTCCGAG......................... 27 0 3 1.33 4 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 1
..........................................................................................................................................TTTACCAATACGGTGTGTGTCTCTCCGAG......................... 29 0 3 1.33 4 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 1 0 0
........................................................................................................GTCTCGTAACTGCCCTGAA..................................................................... 19 0 4 1.25 5 0 0 1 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAACTTCCCTGAA..................................................................... 22 1 2 1.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................TGTGTGTCTCTCCGAGAACCCTGGGCTGG............ 29 0 2 1.00 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................TTCGTCTCGTAACTGCCCTGAAGTTT................................................................. 26 2 2 1.00 2 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TCAGGTCATCTACGACACGA..................................................................................................... 20 1 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAACTGCCCTTAAG.................................................................... 23 1 2 1.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAACTGCCATGAAG.................................................................... 23 1 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGACTCGTAACTGCCCTGAAG.................................................................... 23 1 2 1.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TACGGTGTGTGTCTCTCCGAGAACCCTGGG................ 30 0 2 1.00 2 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAACTGCCCTGAATA................................................................... 24 2 2 1.00 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................................TTCGTCTCGTAACTGCCCTGAAA.................................................................... 23 1 2 1.00 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.......................................................................TCAGGTCAGCTACGACACG...................................................................................................... 19 0 2 1.00 2 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TCAGGTCAGCTACGACACT...................................................................................................... 19 1 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GTCTCGTAACTGCCCTGAAT.................................................................... 20 1 4 1.00 4 0 0 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TTCAGGTCAGCTACGACACGAGCT.................................................................................................. 24 1 2 1.00 2 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAACTGCCCTGAAGT................................................................... 24 1 2 1.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TTAGGTCAGCTACGACACGA..................................................................................................... 20 1 2 1.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TTCATGTCAGCTACGACACGA..................................................................................................... 21 1 2 1.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TACGGTGTGTGTCTCTCCGAGAACCCTG.................. 28 0 3 1.00 3 0 0 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................................TTCGTCTCGTAACTGCCCTGAATTT.................................................................. 25 2 2 1.00 2 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................TACGGTGTGTGTCTCTCCGAGAACCCT................... 27 0 3 1.00 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0
..........................................................................................................................................TTTACCAATACGGTGTGTGTCTCTCCGA.......................... 28 0 3 0.67 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0
............................................................................................................................................TACCAATACGGTGTGTGTCTCTCCGA.......................... 26 0 3 0.67 2 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................TCAGGTCAGCTACGACACGAGCGT................................................................................................. 24 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TTCAGGTCAGCTATGACACGAGCT.................................................................................................. 24 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TCAGGTCAGCTACGACACGAGCATT................................................................................................ 25 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TTCAGGTCAGCTACGGCACGAGC................................................................................................... 23 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCCTCTCGTAACTGCCCTGAAG.................................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTTGTAACTGCCCTGAA..................................................................... 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TCATGTCAGCTACGACACTA..................................................................................................... 20 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCGCGTAACTGCCCTGAAG.................................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TCGTCTCGGAACTGCCCTGAAG.................................................................... 22 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TCAGGTCATCTACTACACGAGCG.................................................................................................. 23 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TCAGGACAGCTACGACACGTGCG.................................................................................................. 23 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TCGTCTCGTACCTGCCCTGAAG.................................................................... 22 1 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAACTGCCCTAAAG.................................................................... 23 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAACTGCCTTGA...................................................................... 21 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................TTCATGTCAGCTACGACACGAG.................................................................................................... 22 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................TTCAGGTCATCTACTACACGACC................................................................................................... 23 3 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCCTCTCGTAACTGCCCTGAAA.................................................................... 23 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................TAGGTCAGCTACGACACGAGTG.................................................................................................. 22 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................TCCGAGAACCCTGGGCTGGAGGCC....... 24 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................TTCAGGTCAGTTACGACACGAGC................................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTATCGCAACTGCCCTGA...................................................................... 21 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TCGTCTCGTAACTGCCATGAAG.................................................................... 22 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TCGTCTCGTGACTGCCCTGAAG.................................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................TTCCTTCTTCGTCTCGTAACTGCCCTGAAG.................................................................... 30 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAACTGCCCTGAAGGT.................................................................. 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGGCTCGTAACTGCCCTGA...................................................................... 21 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCTTAACTGCCCTGA...................................................................... 21 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TCAGGTCAGCTACGACACGAGAT.................................................................................................. 23 2 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAACTGCCCTGAAGTC.................................................................. 25 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................TTCGTCTCGTAACTGCCA......................................................................... 18 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................TTCAGGTCAGCTACGACACCAGC................................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAACTGCCCTGAAGATT................................................................. 26 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................TGTGTCTCTCCGAGAACCCTGGGCTGGAA.......... 29 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................TCGTCTCGTAACTGCCCTGAAGT................................................................... 23 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TCAGGTCAGCTACTACACGAGC................................................................................................... 22 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAACTGCCCTGAAGC................................................................... 24 1 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................TCCGAGAACCCTGGG................ 15 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................TTCAGGTCAGCTACGACACGAAC................................................................................................... 23 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAACTGCCCTGAAGAA.................................................................. 25 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TTCAGGTCAGCTACGACACGAGT................................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................AGGTCAGCTACGACACGAGC................................................................................................... 20 0 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAATTGCCCTGAAG.................................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCTTCGTGTAACTGCCCTGAAG.................................................................... 23 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAACTGCCCAT....................................................................... 20 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGGCTCGTAACTGCCCCGAAG.................................................................... 23 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TTCAGGTCAGCTACGACACGAA.................................................................................................... 22 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TCAGGTCAGCTACGACCCGAG.................................................................................................... 21 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAACTGCCCTGAT..................................................................... 22 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................TTCGTCTCGTCACTGCCCTGA...................................................................... 21 1 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................TGCGTCTCGTAACTGCCCTGAAG.................................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAACTGCCCTGAGG.................................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAATCGCCCTGAAG.................................................................... 23 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAACTGCCCTGATT.................................................................... 23 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAGCTGCCCTGAAG.................................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAACTGCCCTGAAGGTT................................................................. 26 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................TTCAGGTCAGCGACGACACGAGC................................................................................................... 23 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................CAGGTCAGCTACGACAAGAGCG.................................................................................................. 22 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAACTGCCCCGAAG.................................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TCGTCTCGTAACTGCCCTGA...................................................................... 20 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TTCAGGTCGGCTACGACACGAGC................................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TTCAGGTCATCTACGACCCGAG.................................................................................................... 22 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCCACTCGCAACTGCCCTGAAGGT.................................................................. 25 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGCAACTGCCCTGAAG.................................................................... 23 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TCAGGTCAGCTACTACACGAG.................................................................................................... 21 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TCAGGTCAGCTATGACACGA..................................................................................................... 20 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TGTGTCTCTCCGAGAACCCTGGGCTGGATC......... 30 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..................................................................................................................................................TACGGTGTGTGTTTCTCCGCGAACCCGGG................. 29 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAACTTCCCTTA...................................................................... 21 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................CTCGTCTCGTAACTGCCCTGAA..................................................................... 22 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................CAGGTCAGCCACGACACGAGC................................................................................................... 21 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TCTTCTCGTAACTGCCCTGAAG.................................................................... 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TCAGGTCAGCTACGTCACGA..................................................................................................... 20 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TTCAGGTCAGCTACGATACGAG.................................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TCAGGTCAGCTACGACACGAGA................................................................................................... 22 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TTCAGGTCAGCTACCACACGAGC................................................................................................... 23 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TCAGGTCAGCTACGACACCAG.................................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TTCAGGTCACCTACGACACGAGC................................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAACTTCCCTGAAG.................................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAACTGCCCTTAATTT.................................................................. 25 3 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................TGTGTGTCTCTCCGAGAACCTTGGGCTGG............ 29 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TTCAGGTCAGCTACGCCAAGA..................................................................................................... 21 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TCAGGTCAGCTACGACTCGA..................................................................................................... 20 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................................TTCGTCTCGTTACTTCCCTGAAGA................................................................... 24 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................CTTCGTCTCGTAACTGCCCTGAA..................................................................... 23 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................TTCAGGTCAGCTACGACA........................................................................................................ 18 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAACTGCCCTGATG.................................................................... 23 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................AGTCTTTCGTCTCGTAACTGCCCTGA...................................................................... 26 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCTTAACTGCCCTGCAG.................................................................... 23 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TTCAGGTCAGCTACGACACGATC................................................................................................... 23 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTCACTGCCCTGGAG.................................................................... 23 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TCGTCTCGTAACTGCCTTGA...................................................................... 20 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAACTGCCCTGAC..................................................................... 22 1 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTTTCGTAACTGCCCTGA...................................................................... 21 1 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................CAGGTCAGCTACGACACGAGCT.................................................................................................. 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TTCAGGTCAGCTACGACACAAG.................................................................................................... 22 1 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................TTCAGGGCAGCTACCACACGAGC................................................................................................... 23 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAACTGACCTGAAG.................................................................... 23 1 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAACTGCTCTGAAG.................................................................... 23 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGGCTCGTAACTGCCCGGAAG.................................................................... 23 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAACTGCCCTGAAGATTT................................................................ 27 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGCAACTACCCTGAAG.................................................................... 23 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TCCGTCTCGTAACTGCCCTGAAG.................................................................... 23 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TCGTCTCGTAACTGCCCTGAAGGATTT............................................................... 27 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TCGTCTCGTAACTGCCCT........................................................................ 18 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTGACTGACCTGAAG.................................................................... 23 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................ATCTTCGTCTCGTAACTGCCCTGAAG.................................................................... 26 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAACTGCCCTGAACT................................................................... 24 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TCAGGTCAGTTACGACACGAG.................................................................................................... 21 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTGACTGCCCTGAA..................................................................... 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TCGTCTCGTAAATCCCCTGAAGT................................................................... 23 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCCTAACTGCCCTGAAG.................................................................... 23 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TCGTCTCGTAACTGCCCTGAAGATT................................................................. 25 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TCGTCTCGTAACTGCCCTGAATTT.................................................................. 24 2 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAACTGCCCTGATAT................................................................... 24 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................TTCAGGGCAGCTACGACACGAGC................................................................................................... 23 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................TTCAGGGCAGCTACGACACGA..................................................................................................... 21 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TCAGGACAGCGACGACACGAGCG.................................................................................................. 23 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAAATGCCCTGATG.................................................................... 23 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TCGTCTCGTAACTGCCCTGTAA.................................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TACGGTGTGTGTCTCTCCGCGCACCCTGG................. 29 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................TCTCGTAACTGCCCTGAAGGTGGTCCTG........................................................... 28 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAACTGCCCTGTT..................................................................... 22 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TTCAGGTCAACTACGACACGAGC................................................................................................... 23 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................CAGGACAGCTACGACACGAGCG.................................................................................................. 22 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAACTGCCCTGC...................................................................... 21 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAACTGCTCTGAA..................................................................... 22 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................TTCAGGTCAGCTACGACACT...................................................................................................... 20 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TGTGTCTCTCCGAGAACCTTGGGCTGGAG.......... 29 1 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGGAACTGACCTGAA..................................................................... 22 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAACTGCCCTGT...................................................................... 21 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TTACCAATACGGTGTGTGTCTCTCCGAG......................... 28 0 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TACGGTGTGTGTCTCTCCGCGAACCCT................... 27 1 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TTACCAATACGGTGGGTGTCTCTCCGAG......................... 28 1 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................TACCTATACGGTGTGTGTCTCTCCGAG......................... 27 1 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................TTACCACTACGGTGTGTGTCTCTCCGAG......................... 28 1 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...........................................................................................................................................TTACCAATACGGTGTGTGTCTCCGAGA.......................... 27 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TTACCAATACGGTGTGTGTCTCTCCG........................... 26 0 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................CGGCTCGTAACTGCCCTGGAT.................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................TTCGGGTCAGCTACGACACGAGC................................................................................................... 23 1 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GTCTCGTAACTGCCCCGAAG.................................................................... 20 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...TGCGGAGTGAGGAGTCCTACACTTC.................................................................................................................................................................... 25 0 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...TGCGGAGTGAGGAGTCCTACACTTCT................................................................................................................................................................... 26 0 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................TCTGTCTCTCCGAGAACCCTGTG................ 23 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................CTCGTAACTGCCCTGAAGG................................................................... 19 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................CTCGTAACTGCCCTGAAG.................................................................... 18 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GTCTCGTAACTGCCCCGAAGA................................................................... 21 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GTCTCGTAACTGCCCTGAGG.................................................................... 20 1 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TCTCGTAACTGCCCTGAAGGA.................................................................. 21 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTAGTCTAGTAACTGCCCTGAA..................................................................... 22 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GGCTAGTAACTGCCCTGAAG.................................................................... 20 2 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GTCTCGTAACTGCCCTGCAG.................................................................... 20 1 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................TTAGTCTCGTAACTGCCCTGAAT.................................................................... 23 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GTCTCGTAACTGCCCTTAAT.................................................................... 20 2 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................CTCGTAACTGCCCTGAATG................................................................... 19 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GTCTCGTAACTTCCCTGAAT.................................................................... 20 2 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGACTCGCAACTGCTCTGA...................................................................... 21 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TTCAGTTCATCTACTACACGA..................................................................................................... 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................GTCTCGTTACTGCCCCGGAG.................................................................... 20 3 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTCACTGCCCTTC...................................................................... 21 3 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................GTCTCGTAACTGCCCTGAGTT................................................................... 21 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................TCGTAACTGCCCTGAATT................................................................... 18 2 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GTCTCGTAACTTCCCTTAAT.................................................................... 20 3 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTCTCGTAACTGCTA......................................................................... 18 2 11 0.09 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TAAGATCAGATACGACACGA..................................................................................................... 20 3 14 0.07 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

GCGACGCCTCACTCCTCAGGATGTGAAGACCAAGAGCCTGCACTCCCTCCTCTAGTACTATGGATGGTGGAAGTCCAGTCGATGCTGTGCTCGCGAGGAGCAAGCAGAGCATTGACGGGACTTCCACCAGGACCGCAGAAATGGTTATGCCACACACAGAGAGGCTCTTGGGACCCGACCTCCGGGAATACT
*****************************************************..(((.((.((((((((((((.(((.(((((.(((((((.....))))))).))))).))).))))))))))))...)).))).******************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR039758
"Early planula, untreated"		 SRR039765
"Primary polyps, oxidized"		 SRR039756
"Gastrula, untreated"		 SRR039762
"Metamorphosing individuals, untreated"
.......................................................................AGTCCAGTCGATGCTGTGCTC.................................................................................................... 21 0 2 0.50 1 1 0 0 0
................................................................................................................................AGGACCGCAGAAATGGTTATGCCACACA.................................... 28 0 3 0.33 1 0 1 0 0
............................................................TGGATGCTGGAAGTCCAAT................................................................................................................. 19 2 6 0.17 1 0 0 1 0
.............................................................GGATGCTGGAAGTCCAA.................................................................................................................. 17 2 19 0.05 1 0 0 0 1

Generated: 08/21/2014 at 10:52 AM