ID:

nve-mir-2034

 Coordinate:

scaffold_4:1299751-1299846 -

 Confidence:

Known

 Type:

Unknown

 [View on miRBase]
[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-3.9 -3.3 -3.3

Sense Strand Reads

gTtGtTGGgTTGGTTtttTgttgttttTtGtTgttgtgttGGTTGGggTGGTGttttGtGTGTtGTTTTtgTGtTGTTTTTtGttTTtGgggggTtttTGttGGGgTttTGgttttttTGTgtGTGgttATGCATGAAACTTACAACTTCAACGTTTTGTTGATTTATTTCTCTAGTGCCAGATTTACCACTGTAC
*******************************************************............................................................((((((((((....))))))))))********************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR039754
"Adult males, untreated"		 SRR039731
"Adult females, untreated"		 SRR039758
"Early planula, untreated"		 SRR039764
"Primary polyps, untreated"		 SRR039755
"Adult males, oxidized"		 SRR039760
"Late planula, untreated"		 SRR039756
"Gastrula, untreated"		 SRR039732
"Adult females, oxidized"		 SRR039762
"Metamorphosing individuals, untreated"		 SRR039765
"Primary polyps, oxidized"		 SRR039763
"Metamorphosing individuals, oxidized"		 SRR039759
"Early planula, oxidized"		 SRR039728
"Unfertilized eggs, oxidized"		 SRR039761
"Late planula, oxidized"
........................................................................................................GCTAATGCAAAAAATGTCAGTGT..................................................................... 23 1 1 53.00 53 24 10 6 3 3 0 3 1 0 1 1 0 0 1
........................................................................................................GCTAATGCAAAAAATGTCAG........................................................................ 20 0 1 46.00 46 23 20 0 3 0 0 0 0 0 0 0 0 0 0
........................................................................................................GCTAATGCAAAAAATGTCAGT....................................................................... 21 0 1 36.00 36 18 12 3 1 0 1 0 0 1 0 0 0 0 0
........................................................................................................GCTAATGCAAAAAATGTCAGTGA..................................................................... 23 1 1 24.00 24 10 14 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GCTAATGCAAAAAATGTCA......................................................................... 19 0 1 17.00 17 7 9 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................GCTAATGCAAAAAATGTCAGTGAT.................................................................... 24 2 1 15.00 15 10 5 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GCTAATGCAAAAAATGTCAGTG...................................................................... 22 0 1 9.00 9 1 3 0 1 1 1 0 1 0 1 0 0 0 0
......................................................................CTGATGTTTTTAGAATTAG........................................................................................................... 19 0 1 7.00 7 2 4 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................CTGATGTTTTTAGAATTAGCCCT....................................................................................................... 23 1 1 6.00 6 0 0 2 0 1 0 1 1 0 0 0 1 0 0
......................................................................CTGATGTTTTTAGAATTAGC.......................................................................................................... 20 0 1 6.00 6 2 1 1 1 0 0 0 0 0 0 1 0 0 0
........................................................................................................GCTAATGCAAAAAATGTCAGTAT..................................................................... 23 2 1 6.00 6 1 5 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GCTAATGCAAAAAATGTCAGA....................................................................... 21 1 1 5.00 5 1 3 0 0 0 0 0 0 0 0 0 0 1 0
......................................................................CTGATGTTTTTAGAATTAGCT......................................................................................................... 21 1 1 5.00 5 1 4 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GCTAATGCAAAAAATGTCAGTGTT.................................................................... 24 2 1 5.00 5 1 3 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................CTGATGTTTTTAGAATTAGA.......................................................................................................... 20 1 1 4.00 4 0 4 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TGATGTTTTTAGAATTAGCCCT....................................................................................................... 22 1 1 3.00 3 1 0 0 0 0 1 0 0 0 1 0 0 0 0
........................................................................................................GCTAATGCAAAAAATGTCAGTA...................................................................... 22 1 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TAATGCAAAAAATGTCAGTGA..................................................................... 21 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................CTAATGCAAAAAATGTCAG........................................................................ 19 0 1 2.00 2 0 0 1 0 0 0 0 0 1 0 0 0 0 0
......................................................................CTGATGTTTTTAGAATTAGCCC........................................................................................................ 22 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GCTAATGCAAAAAATGTCAGTTA..................................................................... 23 2 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GCTAATGCAAAAAATGTCAGTGTA.................................................................... 24 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GCTAATGCAAAAAATGCCAG........................................................................ 20 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GCTAATGCAAAAAATGTCAGTTTA.................................................................... 24 2 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................CTGATGTTTTTGGAATTAGCCCT....................................................................................................... 23 2 1 2.00 2 1 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................GCTAATGCAGAAAATGTCAGTGAT.................................................................... 24 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GCTACTGCAAACAATGTCAGTG...................................................................... 22 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................GCTAATGCAAAAAATGTCATTGT..................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GCTAATGCAAAAAATGTCAGGGAT.................................................................... 24 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................CTGATGTTTTTAGAATTAGAC......................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GCTAATGCAAAAAATGTCAGTGC..................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GCTAATGCAAAAAATGTCAGCG...................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................CTGATGTTTTTAGAATTA............................................................................................................ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................CTGATGTTTTTAGAATTAGCCCA....................................................................................................... 23 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................GCTAATGCAAAAAATGTCT......................................................................... 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TAGTGCAAAAAATGTCAGTGA..................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TCTACTGCAAAAAATGTCAGTG...................................................................... 22 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................CTGATGTTTTTAGAATTAGCC......................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................GCTAATGCAAAAAATGTCAGTGATTA.................................................................. 26 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................TGTTTTTAGAATTAGCCCT....................................................................................................... 19 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................GCTAATGCAAAAAATGTCAGTGTTA................................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................CTGATGTTTTTAGAAT.............................................................................................................. 16 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................TAATGCAAAAAATGTCAG........................................................................ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................CTGATGTTTTTATAATTAGCC......................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................GCTAATGCAAAAAATGTCGGTA...................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................CTGATGTTTTTGGAATTAGCCC........................................................................................................ 22 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................GCTAATGCAAAAAATGGCAGTGTA.................................................................... 24 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................GCTAATGCAGAAAATGTCAG........................................................................ 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GCTAATGCAAAGAATGTCAGTA...................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GCTAAGGCAAAAAATGTCAGTGTA.................................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................CTGATGTTTTTAGAATTATCC......................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................CTGATGTTTTTAGAATTAGAT......................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GCTAATGCAAAAAATGTCAGTGATAA.................................................................. 26 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GCTAATGCAAAAAATGTCAGTGTTAA.................................................................. 26 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GCTAATGCAAAAAATGTAAG........................................................................ 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GCTAATGCGAAAAATGTCA......................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................CTAATGCAAAAAATGTCA......................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GCTAATGCAAAAAATGTCAGTGAA.................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GCTAATGCAAAAAATGTCAGTACTA................................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GCTAATGGAAAAAAGGTCAGCGC..................................................................... 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GCTAATGCAAAAAATGGCAG........................................................................ 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TAATGCAAAAAATGTCAGTGT..................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................CTGATGTTTTTAGAAGTAGCCCT....................................................................................................... 23 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................GTTAATGCAAAAAATGTCAGTGT..................................................................... 23 2 2 1.00 2 0 0 1 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................GATAATGCAAAAAATGTCAGTGA..................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................CGCTAATGCAAAAAATGTCAGTAA..................................................................... 24 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TGATGTTTTTAGAATTAG........................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TGATGTTTTTAGAATTAGCT......................................................................................................... 20 1 5 0.80 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GCTAATGCAAAAAATGTCAGTTT..................................................................... 23 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GCTAACGCAGAAAATGTCAGTGTA.................................................................... 24 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TGATGTTTTTAGAATTAGA.......................................................................................................... 19 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GCTAATGCAAAAAATGTCAA........................................................................ 20 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GCTAATGCAAGAAATGTCA......................................................................... 19 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................AATGCAAAAAATGTCAGT....................................................................... 18 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TGATGTTTTTAGAATTATCC......................................................................................................... 20 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................CTGCTGTTTTTAGAATTCGC.......................................................................................................... 20 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................GCTAATGCAAGAAATGTCAG........................................................................ 20 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................CTGATGTTTTTAGAATTAT........................................................................................................... 19 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................CTGATGTTTTTAGAATTACC.......................................................................................................... 20 1 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GCTAATGAAAAAAAAGTCAGTGA..................................................................... 23 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................CTGATGTTTTTGGAATTAGCT......................................................................................................... 21 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................CTGATGTTTTTGGAATTAGA.......................................................................................................... 20 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GATAATGCAAAAAATGTCAGTGTT.................................................................... 24 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GCTAATGCAAAAAATATCAGTTT..................................................................... 23 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................CTGATTTTTTTAGAATTATCC......................................................................................................... 21 2 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GCTAATGCAAAAAATGTCAGCA...................................................................... 22 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GCTAATGCGAAAAATGTCAGTTT..................................................................... 23 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................CTGATGTTTTTAGAATTAGTA......................................................................................................... 21 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GCGAATGCAAAAAATGTCAGTTA..................................................................... 23 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TAATGCAAAAAATGTCAGTGTTT................................................................... 23 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................CTACTGCAAAACATGTCAG........................................................................ 19 2 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TGATGTTTTTGGAATTAGCT......................................................................................................... 20 2 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GATAATGCAAAAAATGTCAT........................................................................ 20 2 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................CTGATGTTTTTAGAATTAGCTAT....................................................................................................... 23 3 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

gAtCtACCgAACCAAtttAgttgttttAtCtAgttgtgttCCAACCggACCACttttCtCACAtCAAAAtgACtACAAAAAtCttAAtCgggggAtttACttCCCgAttACgttttttACAgtCACgttTACGTACTTTGAATGTTGAAGTTGCAAAACAACTAAATAAAGAGATCACGGTCTAAATGGTGACATG
*********************************************************............................................................((((((((((....))))))))))******************************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 08/21/2014 at 10:13 AM