ID:

nve-mir-2032a

 Coordinate:

scaffold_161:473285-473375 -

 Confidence:

Known

 Type:

Unknown

 [View on miRBase]
[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-37.8 -37.7 -37.0
mature
star
  1. scaffold_161:427071-427092 -
  2. scaffold_161:447174-447195 -
  3. scaffold_161:473305-473326 -

Sense Strand Reads

CATGCGCCCGATAACCAGGCTGATATGGAAACAACAACACCCGAAGAGGATCGCGAGCTCACCGTTGCTGTCGCTGCGACAGTTAGCTAGCATTTATTGCGAGGTAACTGTTGCAGCATCCATGACTGTGAGGTCAGTATTTCAGCATCTAAAGATAAATGCAAGCTCACTGTTACAGCATCCGAGCCGTC
*******************************************************..(((((.((((.((..(((((((((((((.((.(((.....))).)).)))))))))))))...)))))).)))))....******************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR039754
"Adult males, untreated"		 SRR039755
"Adult males, oxidized"		 SRR039731
"Adult females, untreated"		 SRR039764
"Primary polyps, untreated"		 SRR039758
"Early planula, untreated"		 SRR039762
"Metamorphosing individuals, untreated"		 SRR039729
"Blastula, oxidized"		 SRR039726
"Blastula, untreated"		 SRR039728
"Unfertilized eggs, oxidized"		 SRR039765
"Primary polyps, oxidized"		 SRR039760
"Late planula, untreated"		 SRR039732
"Adult females, oxidized"
......................................................................TCGCTGCGACAGTTAGCTAGCA................................................................................................... 22 0 1 48.00 48 18 24 3 0 0 1 2 0 0 0 0 0
...................................................................................................CGAGGTAACTGTTGCAGCATCC...................................................................... 22 0 3 27.33 82 47 23 2 4 3 0 0 0 0 2 1 0
...................................................................................................CGAGGTAACTGTTGCAGCAT........................................................................ 20 0 3 11.33 34 26 1 1 6 0 0 0 0 0 0 0 0
......................................................................TCGCTGCGACAGTTAGCTAGC.................................................................................................... 21 0 1 11.00 11 6 5 0 0 0 0 0 0 0 0 0 0
......................................................................TCGCTGCGACAGTTAGCTAG..................................................................................................... 20 0 1 10.00 10 6 2 2 0 0 0 0 0 0 0 0 0
......................................................................TCGCTGCGACAGTTAGCTAGCT................................................................................................... 22 1 1 9.00 9 5 4 0 0 0 0 0 0 0 0 0 0
...................................................................................................CGAGGTAACTGTTGCAGCATC....................................................................... 21 0 3 8.67 26 16 8 0 0 0 1 0 0 0 1 0 0
......................................................................TCGCTGCGACAGTTAGCTAGCAT.................................................................................................. 23 0 1 8.00 8 6 1 0 0 0 0 1 0 0 0 0 0
......................................................................TCGCTGCGACAGTTAGCTAT..................................................................................................... 20 1 1 6.00 6 2 0 3 0 0 0 0 0 1 0 0 0
...................................................................................................CGAGGTAACTGTTGCAGCATCT...................................................................... 22 1 3 4.00 12 10 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................CGAGGTAACTGTTGCAGCA......................................................................... 19 0 3 4.00 12 9 1 1 1 0 0 0 0 0 0 0 0
....................................................................................................GAGGTAACTGTTGCAGCATCC...................................................................... 21 0 3 3.33 10 7 0 1 2 0 0 0 0 0 0 0 0
....................................................................................................GAGGTAACTGTTGCAGCAT........................................................................ 19 0 3 3.00 9 9 0 0 0 0 0 0 0 0 0 0 0
......................................................................TCGCTGCGACAGTTAGCTAGA.................................................................................................... 21 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
......................................................................TCGCTGCGACAGTTAGCTA...................................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................CGAGGTAACTGTTGCAGCATT....................................................................... 21 1 3 1.33 4 1 2 0 1 0 0 0 0 0 0 0 0
...................................................................................................CGAGGGAACTGTTGCAGCATCC...................................................................... 22 1 3 1.33 4 1 3 0 0 0 0 0 0 0 0 0 0
...................................................................................................CGAGGTAACTGTTGCAGCATCCT..................................................................... 23 1 3 1.33 4 0 3 0 0 0 0 0 0 0 0 0 1
......................................................................TCGCTGCGACAGTTAGTTAGCA................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................TCGCTGCGACAGTTAGCTGGCA................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................GAGGTAACTGTTGCAGCATCT...................................................................... 21 1 3 1.00 3 2 0 1 0 0 0 0 0 0 0 0 0
......................................................................TCGCCGCGACAGTCAGCTCGCA................................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................CGAGGTAACTGTTGCAGCATCCA..................................................................... 23 0 3 1.00 3 3 0 0 0 0 0 0 0 0 0 0 0
........................................................................GCTGCGACAGTTAGCTAGCA................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................TCGCTGCGACAGTTAGCTAGCATT................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................TCGCTGCGACAGTTAGAT....................................................................................................... 18 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................TCGCAGCGACAGTTAGCTAG..................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................TCACTGCGACAGTTAGCTAGCA................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................TCGCTGCGACAGTCAGCTAGCTT.................................................................................................. 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................TCTCTGCGACAGTTAGCTAGC.................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................TCGCTGCGACAGTTATCTAGCA................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................TTGCTGCGACAGTTAGTTAGCA................................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................TGTCGCTGCGACAGTTAGCTAGCA................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................TCGGTGCGACAGTTAGCTAT..................................................................................................... 20 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................TCGCTGCGACAGTTACCTGCCA................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................TCGCTGCGACGGTTAGCTT...................................................................................................... 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................TCGCTGCGACAGTTAGCTAGCTT.................................................................................................. 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................TCGCTGCGACAGTTAGATAT..................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................TCGCTGCGACAGTTAGCTATC.................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................CTCGCTGCGACAGTTAGCTAT..................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................TCGCTGCGACAGTTAGCTAGAT................................................................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................TCGCTGCGCCAGTTAGGTCGCA................................................................................................... 22 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................TTGCTGCGACAGTTAGCTAGCA................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................TCGCTGCGACAGTTAGCGAGCA................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................TAGCTGAGACAGTTAGCTAGCAT.................................................................................................. 23 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................AGGTAACTGTTGCAGCAT........................................................................ 18 0 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................GAGGTAACTGTTGCAGCATC....................................................................... 20 0 3 0.67 2 0 0 1 0 1 0 0 0 0 0 0 0
...................................................................................................CGAGGTAACTGTTGCAGCATCA...................................................................... 22 1 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................CGAGGTAACTGTTGCAGCATTTT..................................................................... 23 3 3 0.67 2 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................GCGAGAGGTAACTGTTGCAGCAT........................................................................ 23 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................CGAGGCAACTGTTGCAGCAT........................................................................ 20 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................CGGGGTAAATGTTGCAGCAGCC...................................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................CGATTTAACTTTTGCAGCATCC...................................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................CTAGGTAACTGTTGCAGCATCC...................................................................... 22 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................CGAGGAAACTGTTGCAGCAT........................................................................ 20 1 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................CGAGGCAACTGTTGCAGCATCT...................................................................... 22 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................CGAGGTAACTGTTGCAGCAGCC...................................................................... 22 1 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................CGGGGCAACTGTTGCAGCATC....................................................................... 21 2 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................CGAGGTAACTGTTGCAGCAGC....................................................................... 21 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................CGAGGTAACTGTTGCAGCAG........................................................................ 20 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................CGAGGTAAGTGTTGCAGCATCC...................................................................... 22 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................CGAGGTAACTGTGGCAGCATCC...................................................................... 22 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................CGAGGTAACTGCTGCAGCAT........................................................................ 20 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................CGAGGTAACTGTTGCAGCATA....................................................................... 21 1 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................TCGCTGCCACCGTTAGCTCGCA................................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................GAGGAAACTGTTGCAGCAT........................................................................ 19 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................TCGCTGCTACAGTTAGCTAGCA................................................................................................... 22 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................CGAGGTAGCTGTTGCAGCATCC...................................................................... 22 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................CGAGGTAACTGTTGTTGCAT........................................................................ 20 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................AGGGAACTGTTGCAGCATCC...................................................................... 20 1 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................CGATGTAACTGTTTCAGCAT........................................................................ 20 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................CGAGGTAACTGTTGCGGCATCC...................................................................... 22 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................TCGCTGGCACAGTTAGCTAGCA................................................................................................... 22 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................CGAGGTAACTGTTGCATCAT........................................................................ 20 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................CGAGGACACTGTTGCAGCATC....................................................................... 21 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................GAGGTAACTGTTGCAGCATT....................................................................... 20 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................TCTCTGCCACAGTTAGCTAGCA................................................................................................... 22 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................CGAGGTAACTTTTGCAGCATCT...................................................................... 22 2 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................TCGCTGCGACAGTTAGCTTTT.................................................................................................... 21 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................CGAGGTAACTGTTGCAACATCC...................................................................... 22 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................CGAGGTAACTGTTGTAGCATCC...................................................................... 22 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................CGAGGTAACTGTTGCAGA.......................................................................... 18 1 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................TCGCTGCCCCAGTTAGCTAGCA................................................................................................... 22 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................TGAGGTAACTGTTGCAACATCC...................................................................... 22 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................CGAGGAAACTGTTGCAGCATAC...................................................................... 22 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................GAGGTAACTGTTGCAGCATCCT..................................................................... 22 1 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................CGAGGTAACTGGTGCAGCATCT...................................................................... 22 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................CGAGGTAACTGTTGCAGAAT........................................................................ 20 1 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................CGAGGTAACTGTTACAGCAT........................................................................ 20 1 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................CGAGGTAACTGTTGCACCATCT...................................................................... 22 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................CCGAGGTAACTGTTGCAGCAT........................................................................ 21 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................GAGGTAACTGTTGCAGCATCCA..................................................................... 22 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................CGAGGTAACTGTTGCAGC.......................................................................... 18 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................CGAGGCAACTGTTGCAGCTTC....................................................................... 21 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................CGAGGTAACTGTTTCATCATCT...................................................................... 22 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................AGCTCACCGTTGCTGTCGCT.................................................................................................................... 20 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................TGCAGCATCCATGACTGTGAGGT......................................................... 23 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................CGAGGTAATTGTTACAGCATCA...................................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................CGAGGTAACTGTTGTAGCATCCTA.................................................................... 24 3 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................AGGTAACTGTTGTAGCATCCT..................................................................... 21 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................CGTGGTAACTGTTGCGGCAT........................................................................ 20 2 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................CGAGGAAACTGTTGCAGCAC........................................................................ 20 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................CGAGGGAACTGTTGAAGCA......................................................................... 19 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................CCAGGGAACTGTTGTAGCATCC...................................................................... 22 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................CGAGGCAAATGTTGCAGCATCT...................................................................... 22 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................CGAGGGAAATGTTGCAGCAGCC...................................................................... 22 3 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................TTGCTACGATAGTTAGCTAGC.................................................................................................... 21 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................CGAGGTAACTGTTGCAGAT......................................................................... 19 2 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................CGAGGTAAATGTTGCAGCATAT...................................................................... 22 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GTACGCGGGCTATTGGTCCGACTATACCTTTGTTGTTGTGGGCTTCTCCTAGCGCTCGAGTGGCAACGACAGCGACGCTGTCAATCGATCGTAAATAACGCTCCATTGACAACGTCGTAGGTACTGACACTCCAGTCATAAAGTCGTAGATTTCTATTTACGTTCGAGTGACAATGTCGTAGGCTCGGCAG
*******************************************************..(((((.((((.((..(((((((((((((.((.(((.....))).)).)))))))))))))...)))))).)))))....******************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR039754
"Adult males, untreated"		 SRR039731
"Adult females, untreated"
.......................................................................................................................................TCATAAAGTTGTAGATTTCT.................................... 20 1 3 0.33 1 1 0
........ACTATTGGTCCGACTATAC.................................................................................................................................................................... 19 1 11 0.09 1 0 1

Generated: 08/21/2014 at 09:33 AM