ID:

nve-mir-2031

 Coordinate:

scaffold_48:869417-869493 +

 Confidence:

Known

 Type:

Unknown

 [View on miRBase]
[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-58.7
mature
  1. scaffold_48:869430-869451 +
  2. scaffold_48:869458-869479 -
star
  1. scaffold_48:869429-869450 -
  2. scaffold_48:869459-869480 +

Sense Strand Reads

TATGGTTACGTTAGACCACTTAGGCTACGTCATATTATTATGGGTACGTCAGACCACCTAAAATACGGCACTCTATTTATGGTACTTTTAAGTACCATAAATAGAGTGCCGTATTTTAGGTGGTTAAAACACCACATAGGGTAGGTCAGACCATTTAGGATACGTCAGACCAAATAG
************************************************...(((((((((((((((((((((((((((((((((((....)))))))))))))))))))))))))))))))))))....************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR039754
"Adult males, untreated"		 SRR039758
"Early planula, untreated"		 SRR039760
"Late planula, untreated"		 SRR039764
"Primary polyps, untreated"		 SRR039756
"Gastrula, untreated"		 SRR039765
"Primary polyps, oxidized"		 SRR039759
"Early planula, oxidized"		 SRR039762
"Metamorphosing individuals, untreated"		 SRR039731
"Adult females, untreated"		 SRR039763
"Metamorphosing individuals, oxidized"		 SRR039757
"Gastrula, oxidized"		 SRR039761
"Late planula, oxidized"		 SRR039732
"Adult females, oxidized"		 SRR039729
"Blastula, oxidized"		 SRR039755
"Adult males, oxidized"
...............................................................TACGGCACTCTATTTATGGTAC............................................................................................ 22 0 2 16.50 33 2 5 2 0 4 5 3 2 0 4 1 2 2 0 1
...............................................................TACGGCACTCTATTTATGGTACT........................................................................................... 23 0 2 12.00 24 5 2 3 3 3 3 1 1 0 1 1 0 0 1 0
............................................................................................TACCATAAATAGAGTGCCGTAT............................................................... 22 0 2 7.00 14 0 3 3 4 0 1 1 1 0 0 1 0 0 0 0
...............................................................TACGGCACTCTATTTATGGTA............................................................................................. 21 0 2 5.50 11 2 1 2 1 1 0 2 1 1 0 0 0 0 0 0
...............................................................TACGGCACTCTATTTATGGTAT............................................................................................ 22 1 2 4.50 9 6 0 0 1 0 0 0 0 2 0 0 0 0 0 0
...............................................................TACGGCACTCTATTTATGGT.............................................................................................. 20 0 2 2.00 4 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................ACGGCACTCTATTTATGGTAT............................................................................................ 21 1 2 2.00 4 3 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................TACCATAAATAGAGTGCCGTA................................................................ 21 0 2 2.00 4 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TACGGCACTCTATTTATGGTAA............................................................................................ 22 1 2 1.50 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TACGGCACTCTATTTATGTTACT........................................................................................... 23 1 2 1.00 2 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................TACGGCACTCTATTTATGGTAGAAT......................................................................................... 25 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TACGGCACTCTATTTATGGTTT............................................................................................ 22 2 2 1.00 2 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................TACGGCACTCTATTTATGG............................................................................................... 19 0 2 1.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TACGGCACTCTATTTATGGTTAT........................................................................................... 23 2 2 1.00 2 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
................................................................ACGGCACTCTATTTATGGTA............................................................................................. 20 0 2 1.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................TACGGCACTCTATTTATGTTA............................................................................................. 21 1 2 1.00 2 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................TACGGCACTCTATTTATTGTAC............................................................................................ 22 1 2 1.00 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................ACGGCACTCTATTTATGGTACT........................................................................................... 22 0 2 1.00 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................TACGGCACTCTATTTATTTTACT........................................................................................... 23 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TACCATAAAGAGAGTGCCGTAT............................................................... 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TACCATAAATAGAGCGCCGTATT.............................................................. 23 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TACGGAACTCTATTTATGGTAC............................................................................................ 22 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................TGCGGCACTCTATTTATGGTACT........................................................................................... 23 1 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................CATAAATAGAGTGCCGTAAA.............................................................. 20 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TACGGCACTCTATTTATGGTATA........................................................................................... 23 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................ACGGCACTCTATTTATGGT.............................................................................................. 19 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................TACGGCACTCTATTTACTGTAC............................................................................................ 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................ACGGCACTCTATTTATTGTAC............................................................................................ 21 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................ACGGCACTCTATTTAT................................................................................................. 16 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................TACCATAAATAGAGTGCCGTAA............................................................... 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................CATAAATAGAGTGCCGTATA.............................................................. 20 1 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................TACGGCACTCTATTTATGGTACTA.......................................................................................... 24 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................ACGGCACTCTATTTATGGTAAA........................................................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TACGGCACTCTATTGATGGT.............................................................................................. 20 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................TACGGCACTCTATTTATGGGAC............................................................................................ 22 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................TACGGCACTCTATTTATTGTA............................................................................................. 21 1 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................TACGGCACTCTATTTATGGTTA............................................................................................ 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TACCATAAATGGAGTGCCGTA................................................................ 21 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................TACGGCGCTCTATTTATGGTAT............................................................................................ 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................ACGGCACTCTATTTATGGTTA............................................................................................ 21 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TACGGCACTCTATTTATGGTATAT.......................................................................................... 24 2 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
................................................................ACGGCACTCGATTTATGGTAT............................................................................................ 21 2 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................CGGCACTCTATTTATGGTACT........................................................................................... 21 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................ACGGCACTCTATTTATGGTAC............................................................................................ 21 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................ATTCGGCACTCTATTTATGGT.............................................................................................. 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TACCATAAATAGAGTGCCGTATA.............................................................. 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TATGGCACTCTATTTATGGTAT............................................................................................ 22 2 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................ACGGCACTCTATTTATGGTACCT.......................................................................................... 23 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................TACGGCACTCTATTTATGGGA............................................................................................. 21 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................ACGGCACTCTATTTATGGTATT........................................................................................... 22 1 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................TACCATAAATAGAGTGA.................................................................... 17 1 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................TACGGCACTCTATTTTTTGT.............................................................................................. 20 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................CATAAATAGAGTGCCGTTA............................................................... 19 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

ATACCAATGCAATCTGGTGAATCCGATGCAGTATAATAATACCCATGCAGTCTGGTGGATTTTATGCCGTGAGATAAATACCATGAAAATTCATGGTATTTATCTCACGGCATAAAATCCACCAATTTTGTGGTGTATCCCATCCAGTCTGGTAAATCCTATGCAGTCTGGTTTATC
************************************************...(((((((((((((((((((((((((((((((((((....)))))))))))))))))))))))))))))))))))....************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR039754
"Adult males, untreated"		 SRR039758
"Early planula, untreated"		 SRR039760
"Late planula, untreated"		 SRR039764
"Primary polyps, untreated"		 SRR039731
"Adult females, untreated"		 SRR039756
"Gastrula, untreated"		 SRR039765
"Primary polyps, oxidized"		 SRR039759
"Early planula, oxidized"		 SRR039762
"Metamorphosing individuals, untreated"		 SRR039763
"Metamorphosing individuals, oxidized"		 SRR039757
"Gastrula, oxidized"		 SRR039761
"Late planula, oxidized"		 SRR039732
"Adult females, oxidized"		 SRR039729
"Blastula, oxidized"		 SRR039755
"Adult males, oxidized"
...........................................................................................CATGGTATTTATCTCACGGCAT................................................................ 22 0 2 16.50 33 2 5 2 0 0 4 5 3 2 4 1 2 2 0 1
..........................................................................................TCATGGTATTTATCTCACGGCAT................................................................ 23 0 2 12.00 24 5 2 3 3 0 3 3 1 1 1 1 0 0 1 0
..............................................................TATGCCGTGAGATAAATACCAT............................................................................................. 22 0 2 7.00 14 0 3 3 4 0 0 1 1 1 0 1 0 0 0 0
............................................................................................ATGGTATTTATCTCACGGCAT................................................................ 21 0 2 5.50 11 2 1 2 1 1 1 0 2 1 0 0 0 0 0 0
...........................................................................................TATGGTATTTATCTCACGGCAT................................................................ 22 1 2 4.50 9 6 0 0 1 2 0 0 0 0 0 0 0 0 0 0
...........................................................................................TATGGTATTTATCTCACGGCA................................................................. 21 1 2 2.00 4 3 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................TGGTATTTATCTCACGGCAT................................................................ 20 0 2 2.00 4 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................ATGCCGTGAGATAAATACCAT............................................................................................. 21 0 2 2.00 4 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................AATGGTATTTATCTCACGGCAT................................................................ 22 1 2 1.50 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TATTGGTATTTATCTCACGGCAT................................................................ 23 2 2 1.00 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................ATGGTATTTATCTCACGGCA................................................................. 20 0 2 1.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ATTGTATTTATCTCACGGCAT................................................................ 21 1 2 1.00 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................TCATTGTATTTATCTCACGGCAT................................................................ 23 1 2 1.00 2 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................TTTGGTATTTATCTCACGGCAT................................................................ 22 2 2 1.00 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................GGTATTTATCTCACGGCAT................................................................ 19 0 2 1.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TCATGGTATTTATCTCACGGCA................................................................. 22 0 2 1.00 2 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................CATGTTATTTATCTCACGGCAT................................................................ 22 1 2 1.00 2 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................AAATATGGTATTTATCTCACGGCA................................................................. 24 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................TGGTATTTATCTCACGGCA................................................................. 19 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................CATGGTATTTATCTCAAGGCAT................................................................ 22 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TATATGGTATTTATCTCACGGCAT................................................................ 24 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................TATGCCGTGAGAGAAATACCAT............................................................................................. 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................ATCATGGTATTTATCTCACGGCAT................................................................ 24 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................CAGGGTATTTATCTCACGGCAT................................................................ 22 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................TCATTTTATTTATCTCACGGCAT................................................................ 23 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TATGGTATTTAGCTCACGGCA................................................................. 21 2 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................ATATGCCGTGAGATAAATACCAT............................................................................................. 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................ATGCCGTGAGGTAAATACCAT............................................................................................. 21 1 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................AGGGTATTTATCTCACGGCAT................................................................ 21 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................ATTGGTATTTATCTCACGGCA................................................................. 21 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................AAATGGTATTTATCTCACGGCA................................................................. 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................CATGTCATTTATCTCACGGCAT................................................................ 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TGGTAGTTATCTCACGGCAT................................................................ 20 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................ATATGGTATTTATCTCACGGCAT................................................................ 23 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ATGTTATTTATCTCACGGCAT................................................................ 21 1 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................TGGTATTTATCTCACGGCTTA............................................................... 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TCATGGTATTTATCTCACGGCGT................................................................ 23 1 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................TCCATGGTATTTATCTCACGGCA................................................................. 23 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.............................................................AAATGCCGTGAGATAAATAC................................................................................................ 20 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TATTTATCTCACGGCA................................................................. 16 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................TCATGGTATTTATCTCACGGC.................................................................. 21 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................CATGTTATTTATCTCACGGCA................................................................. 21 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TATGGTATTTATCTCGCGGCAT................................................................ 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................CATGGTATTTATCTCACGGCA................................................................. 21 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TTATGGTATTTATCTCACGGCA................................................................. 22 1 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................AATGCCGTGAGATAAATACCAT............................................................................................. 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TATGGTATTTATCTCACGGTAT................................................................ 22 2 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................TTATGCCGCGAGATAAATACCAT............................................................................................. 23 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................ATTGGTATTTATCTCACGGCAT................................................................ 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................ATATGCCGTGAGATAAATAC................................................................................................ 20 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................AGTGAGATAAATACCAT............................................................................................. 17 1 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................TGTTTTTTATCTCACGGCAT................................................................ 20 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................ATTGCCGTGAGATAAATAC................................................................................................ 19 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Generated: 08/21/2014 at 10:31 AM