mm9 mirtrons

Legend:

   mature strand
   star strand
   substitution
   # exon,  % antisense exon,  - intron,  * gap

mmu-mir-1224 (chr16:20604525-20604609 +)

mirtron (known)

Species Coordinate Alignment
Mouse chr16:20604500-20604634 + #######################################################################################################################################
CAGCAACCATGACTACCTGCCTCTGGTGAGGACTGGGGAGGTGGAGGGTAGCATCATTAGAGCCAGAGCTCTGTCTCAGCTCCCTCTCCCCCCACCTCTTCTCTCCTCAGGTACGACTGCAAGAGGCACCAGGCT
Rat chr11:82536238-82536372 - CAGCAGCCATGACTACCTGCCTTTGGTGAGGACTGGGGAGGTGGAGGGTAGTACCATTAGAGCCAGAGCTCTGTCTCAGCTCCCTCTCCCCCCACCTCTTCTCTCCTCAGGTACGACTGCAAGAGGCTCCAGGCT
Guinea pig Unknown ---------------------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown ---------------------------------------------------------------------------------------------------------------------------------------

mmu-mir-1231 (chr1:137351180-137351267 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr1:137351155-137351292 - #########################-----------------------*-*----------*--------------------*----------*------------------------#########################
TCGGGAGACCATGCACAATATGCAGGTCAGTGTCTGGGCAGAGCTGCA-G-GAGAGAAGGG-CAGGGCCGGACATCTCTGCC-ACCCTGCCAC-CTGCCCTGTCTGTTCTGCCCACAGTTGGAGGTGGACCTGCTGAAAGCAG
Rat chr13:48457124-48457261 - TCGGGAGACCATGCACAACATGCAGGTCAGTGTCTGGGCAGAGCTGCA-G-AAGAGGGAGG-CAGGGCCTACCGTCTCTGCC-ACCCTGCCAC-CTGCCCTGTGTCTTCTGCCCACAGTTGGAGGTGGACCTGCTGAAAGCAG
Guinea pig scaffold_290049:1873-2013 - TCGAGAGACCATGCACAACATGCAGGTCAGCGT-TAGGCAGAGCTGCAGGGAAGAGG-AGCCCAAGGCCTGAGACATGTCCCAACCTTGCCACCCTTCCCTGTCTGTTCTTGCCACAGCTGGAGGTGGACCTGCTGAAAGCAG
Rabbit scaffold_201718:54893-55031 - TCGGGAGACCATGCACAACATGCAGGTTGGCGTCTGGGCAGAGAGCAA-G-GAGAGGGAGCCTGCGGCCTGAGACCTGCCCA-GCCCTGCCGCCCTACCCTGTCTGTTCC-CCCACAGTTGGAGGTGGACCTGCTGAAAGCAG

mmu-mir-1963 (chr7:29868654-29868717 -)

5p_tailed_mirtron (reclassify)

Species Coordinate Alignment
Mouse chr7:29868629-29868742 - -----------------------------#######*####################################################-#########################
TGCAGGAGAAGCAGGTCTGGATAGTAGGGCTGGGAC-GAGATCATGAGGCCTTCCTGGCCACTGGGAAGGACTCGGCCCTTGTCCCGCAGGTGATGGGTGTCTTTAGTGACGAGG
Rat chr1:84206402-84206445 - T-----------------------------------------------------------------------TCGGCTCTTGTTCTGCAGGTGATGGGTGTCTTTAGCGACGAGG
Guinea pig Unknown -------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_13442:491-596 - TGTGGGAGAAGCAGGACTGGGGAGTGAGGCTGGTGCCTGGATGGCGGA--------GGCCACA-GTAAGGACCCAGCCTTTGTCCTGCAGGTGATGGGCATCTTTGGTGATGAGG

mmu-mir-1966 (chr8:108139376-108139443 +)

5p_tailed_mirtron (reclassify)

Species Coordinate Alignment
Mouse chr8:108139351-108139468 + #--------------##############################********#########################################################################
GGTAAGTGTATGCATGTAGAATAGTGTTGGAAGGGAGCTGGCTCA--------GGAGAGAGTCCTGAGATTTAGGCTCTTTCTGACTCAACTCTCCCTTAGCAAGTCAAGTCCATTGAACGCTTTC
Rat chr19:35439852-35439966 + GGTAAGTGTTTGCATGTAGAATAGTGTTGGAAGGGAGTTGGCT-A--------GGAGAGAGTCCTGAGA--TACACTCTTTCTGACTCATTTCTCTCTTAGCAAGTCAAGTCCATTGAACGTTTTC
Guinea pig Unknown ------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_120322:225-342 - GGTGAGTGTA------CAGAATGGCATCAGAAGGG-GTTGGCTCATGGGGAGGGGAAAAGGCCCCG-GCCTCAGGCCCCTCCTGACACACCTCTCCCCCAGCAAGTCAAGTCCATCGAACGCTTCC

mmu-mir-1981 (chr1:186646286-186646367 -)

mirtron (known)

Species Coordinate Alignment
Mouse chr1:186646261-186646392 - #################################################################################################******###################################
TGAAAAGGGTGTTGAGCTGTCCCAGGTAAAGGCTGGGCTTAGACGTGGCCTTTGGGTGTGGAATGCACTTCCGTTTGTAACCGCCATCTAACCCTGG------CCTTTGACAGGTGCGTTCTGACTACAGTGGACCCA
Rat chr13:100816438-100816568 - TGAAGAGGGTGTTGAGCTGCCCCAGGTAAAGGCTGGACCTAGACGTGGCCTGTGGGTGTGGAGTGCACTTCAGTGTGTAACCACCGTCTAACTCCGG------CCTTT-ACAGGTGCGTGTTGACTACAGTGGACCCA
Guinea pig Unknown ------------------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_210177:45015-45151 - TGAAAAAGGTATTGGCTTGCCCCAGGTAAGGATTCTCAGTAGATCTGCCCTCTGGGGGTGGCAGACCCATTCCTTCTTAACCATCGCCTAACCCTTGGTTCTTTCC-TGGCAGGTGCATTTTGACCACCGTGGACCCA

mmu-mir-1982 (chr10:80291548-80291615 +)

5p_tailed_mirtron (known)

Species Coordinate Alignment
Mouse chr10:80291523-80291640 + ###############################*#######################################################################################
AAGAACCGTGAGGACAGAGGTTGGTATTGCT-TGGGAGGGTCCTGGGGAGGGGAGTTCTGGCACCCCAACCTCTCACCCTATGTTCTCCCACAGCCGCCCTACTCCGAACCTTCAGCTT
Rat chr7:10394888-10395002 - AAGAACCGTGAGGACAGAGGTGGGTATTACTGTG---GGGTCCTGGGGAGGGAAGTTCTGGCACCCCGAGCTCTGACCCTATGT-CCCCCACAGCCGCCCTACTCCGAACCTTCAGCTT
Guinea pig Unknown AAGAACCGGGAGGACAGAGGTGGGTACTGCCCTGCTGCCACCCTGGGGA-----------------------------CTGTGT-CCCTTGCAGCTGCCTTGCTCCGGACCTTCAGCTT
Rabbit Unknown -----------------------------------------------------------------------------------------------------------------------

mmu-mir-3064 (chr11:106644008-106644076 -)

5p_tailed_mirtron (known)

Species Coordinate Alignment
Mouse chr11:106643983-106644101 - ----------------------------###########################################################################################
GAATACAATTGTCTAACTTTTTATTTTTGGTCTGGCTGTTGTGGTGTGCAAAACTCCGTACATTGCTATTTTGCCACACTGCAACACCTTACAGATGTGGAAGATGTGAAATTTGTCAT
Rat chr10:96132989-96133107 - GAATACAATTGTCTAACTTTTTATTTTTGGTCTGGCTGTTGTGGTGTGCAAAACTCCGTACATTGCTATTTTGCCACACTGCAACACCTTACAGATGTGGAAGATGTGAAATTTGTCAT
Guinea pig scaffold_226675:13910-14028 - GAATACAATTGTgTttgTTTTTtTTTTTGGTgTGGCTGTTGTGGTGTGCAAAACTCTGTACATTGCTATTTTGCCACACTGCAACACCTTACAGATGTGGAAGATGTGAAATTTGTCAT
Rabbit Unknown -----------------------------------------------------------------------------------------------------------------------

mmu-mir-3076 (chr14:31385336-31385393 +)

5p_tailed_mirtron (known)

Species Coordinate Alignment
Mouse chr14:31385311-31385418 + ---------------------------------*-----*-----------*---------------------****-------------#########################
AGGGGCCATTGGAGTTCTGTTCTAACACAGGGG-AAGCT-CAGTGCCAGCC-TTTCTCTTAGCCGCACTCTGG----TCTTCCCTTGCAGATAAGATCAGCATCCGGGTGCTGGA
Rat Unknown AGGGGTCACTGCAGTT-----CTACCACAGGGGAAAGCC-CAGCACCAGCC-TTTCTCTTAGCTGTGCTCTGG----TC-TCCTTCACAGAGAAGATCGGCGTCCGTGTACTGGA
Guinea pig Unknown AGGGCCCACTGC----------------AGGCA-AAGCTACAGCGCTGGCCCCTTCTGTCACCCACGCCCTGCATCTTCTTCCTTCACAGACAAGATCAACATCCGTGTGCTGGA
Rabbit Unknown -------------------------------------------------------------------------------------------------------------------

mmu-mir-3077 (chr14:58417258-58417324 +)

5p_tailed_mirtron (known)

Species Coordinate Alignment
Mouse chr14:58417233-58417349 + ------****----------------------###########*########################################*****************************************************#####**#################################
ggcgag----ctggcgggagggcgggcgcggcctgcggacggg-tgggcgggcaggcCAAATGGCGCGCCCGAGGCTGACTCCC-----------------------------------------------------TGCTT--CTCCGCAGACCTGCCCGCTCCTGCTGCGGGTCT
Rat chr15:36839416-36839531 + gccg-g----ctggcgggcgggcgggcgcggcctgcggacggg-tgggcgggAAGGCCAAATGGCGCGCCAGAGGCTGACTCCC-----------------------------------------------------CGCTT--CTTTCCAGACCTGCCCGCTGCTGCTGCGGGTCT
Guinea pig Unknown ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown GGTGCGCCGGGT--AGGGCAGAAAGGCGCGGCCTGTGTGTGTGGCGGTGGAGAAGACCGTGTG------------TTTGCTCCCGGCGCGGCTGGGAGGCCGCGACGCTTCGGGATGGAAGAAAGCCCGGGCCGCCGTGCTTAATTTCTGAGACATGCCCGCTGCTGCTGCGGGTCT

mmu-mir-3082 (chr17:25968311-25968377 -)

5p_tailed_mirtron (known)

Species Coordinate Alignment
Mouse chr17:25968286-25968402 - %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%***%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%#########################
TGGCCCATGCATGACATGAGTGCCCTGGTGGACAGAGTGTGTGTGTCTGTGTGG---AGACAGGAGTTGCCCACACATGGCACTCAACTCTGCAGGATAAATACATGGCAGATATGGATG
Rat chr10:15096837-15096956 - TGGCCCATGCATGACATGAGTGCCCCGGTGGACAGAGTGTGTGTGTCTGTGTGGAGGAGACAGGAGTTGCCCACACATGGCGCTCAACTCTGCAGGATAAATACATGGCGGACATGAATG
Guinea pig Unknown ------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown ------------------------------------------------------------------------------------------------------------------------

mmu-mir-3087 (chr2:25298295-25298354 +)

5p_tailed_mirtron (known)

Species Coordinate Alignment
Mouse chr2:25298270-25298379 + ###--------------------------#################################################################################
CCGGTGAGGCCGTGGGCTGGGGCTGTAGCACAGGGCAGGGCAAGAGTTGAGACTTATGGCTCCTAACTCACTGTCATGTCCTCAGATTACGGCTGTCACCTGATGCCAGC
Rat chr3:3609668-3609777 + CCGGTGAGGCCGTGGACTGCAGCTGGAGCACAGGGCAGGGCAAGAGTGGAGGTGTACGGCCCCTAACTCACTATTGTGTCCTCAGATTACGGCTGTCACCTGATGCCAGC
Guinea pig Unknown --------------------------------------------------------------------------------------------------------------
Rabbit Unknown --------------------------------------------------------------------------------------------------------------

mmu-mir-3094 (chr4:40940724-40940791 +)

5p_tailed_mirtron (known)

Species Coordinate Alignment
Mouse chr4:40940699-40940816 + -------**----------------------#########################################################################################
TCTGGTC--TATACTAATGAACATTTATAGATTGTTGGGGACATTTTTAAAGCATGGATTGGTTATTGATTTGTCCTTTAAATTGTGTCCTCAAGTGTGCTACTGTGGCAGCACCTCCCG
Rat chr5:58387651-58387767 + TCTGATC--CATGTCAGTGAACATTTATATGTTGTTGGGGATATTTT-AAAGTATGGATAGGTTATTGATTTGTCTTTTAAATTGTGTCCTCAAGTGTGCTACTGTGGCAGCACCTCCCG
Guinea pig Unknown ------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown TCTGATCAGCACTCTACTGAACATTTCATGTTTATTTAGAATATTTTAAAAATCT--AAAGGTTACTGATGTTGTTTTTGAAATGTGCTTTCAAGTATGCTACTGTGGCAGCACCACCCG

mmu-mir-3097 (chr5:35363694-35363764 +)

5p_tailed_mirtron (known)

Species Coordinate Alignment
Mouse chr5:35363669-35363789 + -----------------------------################****#####################****#######################################################
GCAGAGTCAGCCTTAGGAATGTTTGAGTGACACAGGTGGGAAGTG----TGTGTCCAGTGGGTGTGTCTA----CAGATCTGCTCAGACCTTTCTACCTGTCAGCTCTCTTACAGGGCCCGGGAGATTT
Rat chr14:81375261-81375345 - GCGGAGTCAGCCTCAGGAAT----------------------------------------TGTGTGTCCA----AAGATCTGCTCAGACTTTTCTACCTGTCAGCTCTCTTACAGGGCCCGGGAGATTT
Guinea pig scaffold_210347:9338-9453 - -------CAGCCTGAGCAATGTGGCCGTGACACAGGTGGAAACGCACCGTGCA-CC----TGTGTGTCCGCGTCCTAGCCTGCTCAGGCCTCTCTGC-CGTCAGCTGTCCCACAGGGCCAGGGAGATTT
Rabbit Unknown ---------------------------------------------------------------------------------------------------------------------------------

mmu-mir-3100 (chr7:19672172-19672241 +)

5p_tailed_mirtron (known)

Species Coordinate Alignment
Mouse chr7:19672147-19672266 + ------------*------------------#######******************************#######################################################**************############################
GCTCTCTCACTG-TGCGGGGGTCCTCTGTGCTTGGGAA------------------------------CGGGGTGTCTTTGGGAGTCTTGGGGGCTACCAAACCCCTGTGACACACCCGCTCC--------------CAGTACCTGGTCATGGAATACTACGTGG
Rat chr1:78442950-78443069 + GCGCTCTCACTG-TGCGGGGGTGCCCTGTGCTTGGGAA------------------------------CGGGGTGTCTCTGGGAGTCTTGGGGGCTACCAAACCCCTGTGACACACCTGCTCC--------------CAGTACCTGGTCATGGAATACTACGTGG
Guinea pig scaffold_262596:5455-5604 - GCCACCCCAGAGCTGTTGGGg---------------aaccacacacacactctttccCAGGGCCCTACAGGGATCACTTTGAGGGGGGCAGGTGCTCCTTTCCCCCAGTCTGATTCTTGTTCCTATTCACTGCCCTTTAGTACCTGGTGATGGACTACTATGCTG
Rabbit Unknown ---------------------------------------------------------------------------------------------------------------------------------------------------------------------

mmu-mir-3102 (chr7:108030820-108030906 -)

mirtron (known)

Species Coordinate Alignment
Mouse chr7:108030795-108030931 - #############################################**###################****************###########*#################################################*#############
ATGAGCCTGTGAGTGGCCAGGGTGGGGCTGGGTGGTGCAGGCAGG--AGAGCCATTGATCTATTGT----------------GGGCTCTACTC-CCTGCCCCAGCCAGAGCACCCCATTGGCTACCCACAGGTACACAGCAGC-CAGCGTCATTGAT
Rat chr1:158330130-158330266 - ATGAGCCTGTGAGTGGCCAGGGTGGGGCTGGGTGGTGCAGGCAGG--AGAGCCATTGATCTATTGC----------------GGGCTCTACTC-CCTGCCCCAGCCAGAGCACCCCATTGGCTACCCACAGGTACACAGCTGC-CAGTGTCATTGAT
Guinea pig Unknown ATGAGCCTGTGAGTGGTTAAAGCAGGCCTGGGTGGTATAGACAGG--AGAGCAGCTGTCTTGTCCT----------------GGGCCCCATTCACCTACTCTGGACAAAGCACCCCATTGGCTGCCCACAGGTACACTGCCGCCCAGTGTGATTGAC
Rabbit scaffold_202614:44917-45061 + ATGAGCCTGTGAGTGGCC-----------GGGCGGCGTGGGCTGGCGAGGGCGGCTGTCCTGCCCTGGGTCCCTGGGTCCCTGGGCCCCGTTCCCCAGCCCTGGCCAGAGCAGCCCGTCGGCTCCCCGCAGGTACACAGCCGC-CAGTGTCATCGAC

mmu-mir-3103 (chr7:135431884-135431951 -)

5p_tailed_mirtron (known)

Species Coordinate Alignment
Mouse chr7:135431859-135431976 - ####----------------*-------###########**###########################################*******######################*###############
GGAGGTGAGAAGAGAGGAGG-TATGGGGAGGAGGGAGGA--TCTGCTGTTAGAAAGTCTCTGGTTTGTGACCTCTAACCTCTGA-------TCCTTCCCACAGGCTCTTTGCC-GACATCCTCAACGAT
Rat chr1:187544272-187544389 - GGAGGTGAGAAGGGATGGGGGAGCAAAGGTGGGGGAGAA--TCTGCTGTT-GTAAGTCTCTTGTTTGTGACCTCTGACCTCTGG-------TCCTTCCCATAGGCTCTTCGCT-GACATCCTCAATGAT
Guinea pig scaffold_265363:19135-19253 - GGCGGTAAGGAGGGCCTGGG-T-TAGAGATGAGGGAAGAGCCCTGTATTTTGAACATGATTTATTGATGATCTTTGACCTCTGG-------TTCTTTC-CCAGACTTTTTGCGGGATATCCTCAATGAT
Rabbit scaffold_130971:234-346 - GGAGGTGAGGAGGGGCTGGG-CCCGGGGGTGGGGGGTGA--------------AGGTCTCCTACCTCTGACCCCTGACCTCTGGCTTCTGATCCTTCCCCCAGGCTTTTCGCT-GACATCCTCAACGAT

mmu-mir-3104 (chr7:149178080-149178144 +)

5p_tailed_mirtron (reclassify)

Species Coordinate Alignment
Mouse chr7:149178055-149178169 + ----------------------------------------------*--------***------------------------------------#########################
CAGGACCCCACGCTTCCCGGAAAGGCCAACTAGGGGGCAGGAGCCG-GAGCCCTC---TGCTGAACTGACAGACGCTCTGCTTTGCTCCCCCAGATCTCGATCCATCAGTGGTGCGTCC
Rat chr1:202123356-202123474 + CAGGACCCCAGGCTTCCTAGAAAAGCCAACTAGAGGGCAGGAACCGGGAGCTCTCTCCTGCTGAACTGACAGACACTCTGCTTTCTTCCCCCAGATCTCGATCCATCAGTGGTGCCTCC
Guinea pig Unknown -----------------------------------------------------------------------------------------------------------------------
Rabbit Unknown -----------------------------------------------------------------------------------------------------------------------

mmu-mir-3547 (chr17:25382496-25382583 -)

mirtron (novel)

Species Coordinate Alignment
Mouse chr17:25382471-25382608 - #########################----------------------------------------------------------------------------------------#########################
TGTGACAGCACACCTGACTTCCAAGGTGGGAAGAGGGGTGGGGCCCGGGACTGTACCCATGTGAGGACTATTCTTGAGTCCTGCTCTTGTTCTGAGCACCACCCCTCTCTCAGATGGTGGCCGACATCAGGAAGTACA
Rat chr10:14493051-14493188 - TGTGACAGCACACCTGACTTCCAAGGTGGGAAGAGGGGTGGGGCCCGGGACTGTACCCATGTGAGGACTATTCTTGAGTCCCGCTCTTGTTCTGAGCACCACCCCTCTCTCAGATGGTGGCAGACATCCGGAAGTACG
Guinea pig Unknown ------------------------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown ------------------------------------------------------------------------------------------------------------------------------------------

mmu-mir-3572 (chr7:3607567-3607634 +)

5p_tailed_mirtron (reclassify)

Species Coordinate Alignment
Mouse chr7:3607542-3607659 + #############--------------------------------------------------------------------------------#########################
AACGGTGCCACAAGTAAGTGGAGACCAGTTTGGGGAACAGGGCAAGGTGGACAGTAGCTGACAGCCTGTTTACACTTGTCCTTCTTTCCCCAGGCTATAGTTCGGTTGTGGCAGACAG
Rat chr1:63873988-63874105 - AACGGTGCCACCAGTAAGTGGAGGCCAGTTTGGGGGACAGGGCAAGGTGGGCAGTAGCTGACAGCCTGTTTACACTTGCCCTTTTTTCCCCAGGCTATAGTTCGGTTGTGGCAGACAG
Guinea pig Unknown ----------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_160673:7524-7640 - AACGGCGCCACCAGTAAGTGGGCAGGGGTGTGGGC-TGGGGGCAGGGTGGGCAGCAGCCCCCGGCTCCTTTCTAACCACTCCTCCTCCCACAGGTTATAGCTCAGTCGTGGCAGACAG

mmu-mir-5107 (chr18:60971734-60971805 +)

5p_tailed_mirtron (reclassify)

Species Coordinate Alignment
Mouse chr18:60971709-60971830 + ----*****************------------------------------------------------------------------------------*----------****-----##################********************#######
GGGG-----------------ACAGACTGATCTGCAGTTCCAAGATGTTGGGCAGAGGAGGCAGGGACAACAAACTGGTGGCCCAGCTGTATCAACCTG-TGCTTCTCTT----CCCAGTCACCCTGTGAAGACAGA--------------------GGCCAGC
Rat chr18:56765149-56765271 + AGGG-----------------CTTGACTGCTCTACAGTTCTAAGAGATTGGG---AGGAGGTGGGGACAACAAACTGATAACCCAGATGTATCAACTTG-TGTTTCTCTTCCTTCCCAGTGTTCTTGTGAAGACAGA--------------------AGCCAGC
Guinea pig Unknown GGG--------------------------------------------CTGGG---AGGGAACAGGGACAAGATACGTGTCCTCCAGC---CTCAACCTGCCGCTTCTCTT--TCCACAGTCATGATGTGAGAACAGCAGGAGCCGTTTCCAACACGCAGGCAGC
Rabbit scaffold_198701:54881-55014 - AGCAGCAGACGGCACAAAGTCCCTGACCGCTTGGGGGCCCCAGGATGCTGGG---AAGGCG--A----------------CTTCAAC---TTCAATCTGCTGCTT------TCTCCTAGTTTTCATATGAGAACTGCAGAAGCCGCCTCCAGCATCCAGCCAGC

mmu-mir-5129 (chr2:44878625-44878692 -)

5p_tailed_mirtron (reclassify)

Species Coordinate Alignment
Mouse chr2:44878600-44878717 - -------------------------------------*------------------------------------***--------------------#########################
AAATATTAATTATTTTCTATTCACCTGAATATGTGGG-GGCATTGGTATTTTCAAAGCAGCATTTTGAATGTGC---CTGTGCATCTCTTCCCACAGTGGTGAACTATGACAACGTAGTGGA
Rat chr3:25549138-25549256 - AAATATTAATTATTTTCCACTTAACTGGACATTTGGGGGGCACTGATATTCTCAAAGCAGCATTTCGAGTGCTT---CTCTGTGTCTCTTCCCACAGTGGTGAACTATGACAACGTAGTGGA
Guinea pig Unknown --------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_204579:10612-10731 - AAAATATAATTATTTTTCATTTACCGAAACAATTGGGGGGGCCTGATATTTTTCCA-CAGTGTTTAGACAGTGTACGTTTTGTGTTTCTT-CTACAGTGGTGAACTATGACAATGTAGTGGA

mmu-mir-5132 (chrX:71268873-71268934 -)

5p_tailed_mirtron (reclassify)

Species Coordinate Alignment
Mouse chrX:71268848-71268959 - ################################################################################################################
GTGCCAGTTCGGTGGGTGACGGCAGGCCGGCGTGGGGTGGTGGACTCAGGCTTCTGGAGCTGAAGCCTGATGTTCCCCATCCCGCAGCGGCCTTGATCGTGCGCGACCAGAC
Rat chrX:159968763-159968874 - GTGCCAGTTCGGTGGGTGACGGCAGGCCGACGTGGGGCGGTGGACCCAGGCTTCTGGAGCTGAAGCCTGATGTTCCCCGTCCCGCAGCGGCCTTGATCGTGCGCGACCAGAC
Guinea pig Unknown ----------------------------------------------------------------------------------------------------------------
Rabbit Unknown ----------------------------------------------------------------------------------------------------------------

mmu-mir-5134 (chr17:24371480-24371545 -)

5p_tailed_mirtron (reclassify)

Species Coordinate Alignment
Mouse chr17:24371455-24371570 - -------------------------------------------------------------------------------------------#########################
GATGAGGCCACTTGCTCAAGCTGAACAGACTTGGCAGAAAGGGCAGCTGTGATGCTTGTCCTAGTTTTCACGGGTGGCCCTCTTTCTGCAGGTACATTCTAATCGACTGGTTGGTG
Rat chr10:13485148-13485245 - GATGAGGCCACTTGCTTGGGCTGAACAGA------------------TGTGACACTTGTCCTAGTTTTCACGGGCGTCCCTCTCTCCGCAGGTACATTCTAATCGACTGGTTGGTG
Guinea pig scaffold_258015:80306-80370 + ---------------------------------------------------tTGttTGTTTTtAGTAACCTGGGTGGCATTCTTTCCACAGGTACATTCTGGTTGACTGGCTGGTA
Rabbit Unknown --------------------------------------------------------------------------------------------------------------------

mmu-mir-5617 (chrX:20440244-20440308 -)

3p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chrX:20440219-20440333 - #########################---------------------------------------------------*****---------------------------------------
GCTCAACAACGACCCCCACCCCAGGGTAAGTGAGGGCAAGCCTTCTGGGTTCCTACCATCCCAGGCGGCCTCAGCT-----CTCACTCACTCTCACTTGCTGTTCTTTTTTTCTGTTCCT
Rat chrX:12554201-12554320 + GCTCAACAACGACCCCCACCCCAGGGTAAATGAGGGCAGGCCTCCTGGGTTCCTTCCATCCCAAGCAACCTCAGCTGTTTGCTCACTCTCTCTCACTTGCTGTTCTTTTCTTCTGTTCCT
Guinea pig Unknown ------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown ------------------------------------------------------------------------------------------------------------------------

mmu-mir-5710 (chr9:54556119-54556189 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr9:54556094-54556214 + ----------------****----------****------------------------------------*-*****-------------*----*--------------*--#########################
CCAACTCTAGTGTTCC----GGCCTCCAGA----AGAGTCTTGGGACATAGTGTAAGGCAGTGGTCTGGC-T-----AGTCCCACTAACT-GGCT-CTTTGTCCCTCGGC-AGGCAAGAATGTTGTCCACCAGCTGTC
Rat chr8:58260197-58260321 + CCAGCTCTAGTGTCCT----GGCTTCCAGA----AGAGCCTTGGGGTATAGTGTAAGGCAGTGGTCTGGTCTAGC--AGTCCCACTAACT-GGCT-CTTTGTCCCCCGGC-AGGCAAGAATGTTGTACACCAGCTGTC
Guinea pig scaffold_295157:48969-49089 - g-aactcGA-TGTCCT----TAAGTGCA------GGGTCATGTGGGTGGAATTCAACACTTTGGTCTGTT-TGTTACACTATTACTAACT-GGTT--TTTCCCCCTTGTA-AGGCAAGAATGTTGTGCATCAGTTGTC
Rabbit scaffold_93407:4353-4488 + CCAGCACGGGGGTCTCTGGAGGCCCCCAGGCACGGGGGCGGGTGGGTGATGTT-CACGCGGCGGGCCGTT-TATCATGCGAATACTAACCCGGTTTTTTTCTCCCTTGGCAAGGCAAGAATGTCGTGCACCAGCTGTC

mmu-mir-6418 (chr5:137970738-137970800 -)

5p_tailed_mirtron (known)

Species Coordinate Alignment
Mouse chr5:137970713-137970825 - ---------------***-------------------------***---------------**---------------------------------#########################
TGGAGCCAGAAGAGG---CAAGAACACGGTCAGGGGAAGGGAA---GAGATGCACTGTCCT--CTAAAATGCCTGACTGCAACCTCCTTTCTCCAGGGTACCTGTCATGCTGCCGCTTCCT
Rat chr12:19598635-19598748 - TGGGGCCTGAAGAAGAGGCGA---GATGGTCGGGGAGAGGGAA---GGGACGCACTGTCTTCCCTAACACGCCTGACCAT-GCCTCCTTTCCCAAGGGTACCTCTCCTGCTGCCGCTTCCT
Guinea pig Unknown -------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_205825:35325-35434 - AGGGGCCTGGCTGGG---CACAGGCGC----TGGGGGTGGGGGGTTGTGCCGCGGTTCCTATTAAGA----CCTGGCTGACTGCCCTTCTCCCCAGGGTACCTGTCTTGCTGCCGATTCCT

mmu-mir-668 (chr12:110972943-110973011 +)

3p_tailed_mirtron (reclassify)

Species Coordinate Alignment
Mouse chr12:110972918-110973036 + #############**#############################################################################------------*---------------#*******#
CAAGGCTATCACC--ATCCCCCTTCAGGTAAGTGTGCCTCGGGTGAGCATGCACTTAATGTAGGTGTATGTCACTCGGCTCGGCCCACTACCCAATGCTGTCCC-ACCCCTTCTTCACAGG-------A
Rat chr6:134416200-134416321 + CAAGGCCATATACACATCCCCCTTCAGGTAAGTGTGCCTCGGGTGAGCATGCACTTAACGTAGGTGTATGTCACTCGGCTCGGCCCACTACCCAACGCGGCCCCAACTCCTTCTTCACAGG-------A
Guinea pig Unknown ---------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_125203:11452-11574 + CA--GCCACGGGC--G-CCCCCTTGAGGTAAGCGCGCCTCGGGTGAGTGTGTGCCAAACCCTGGCGTATGTCACTCTGCCCGGCCCACTACCCAAGGCTCTCCC-ACCCGTTCTGAACAGGGTTTCTGA

mmu-mir-6769b (chr8:74154946-74155005 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr8:74154921-74155030 - -------------**------------------------------------------------------------------------#########################
ACAGGGTGGGGGA--GGTGACTGAGGGTGCTCCTGGTGGGTGGGGAAGAGCCTAGTTCACATCAGGCATCTTCCCTGTCCCACCCAGGCTCTGGTGTGGAGGACCCTGTAGG
Rat chr16:18829201-18829310 - ACAGGGTGGGTAA--GGTGACTGAGGTTGTTCCTGGTGGGAGGAGAAGAACCTAGCTCATCTCAGGCATCTCCCCTGTCCCACCCAGGCTCGGGTGTGGAAGACCCTGTAGG
Guinea pig scaffold_155277:6845-6956 - ACAGGGTGGGCGGGTGGTGGTCCAGGGCCCTCTTGGTGGGCAGGAAAGAATAGGGCTCACTTAGGCCATCTCTCCCGCTCCACCCAGGCTCGGGTGTAGAAGACCCTGTGGG
Rabbit Unknown ----------------------------------------------------------------------------------------------------------------

mmu-mir-6896 (chr1:34174204-34174276 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr1:34174179-34174301 + --------*****************--------------------------------------------------------------------------**----------------#########################
TGTGTGTT-----------------CTTTGTGTCATTTAGCGTTTCCTTTGTAGGCGACGAGAACCCGTGCCTGGTGTGTAATAATCACTGTTTCTCTC--TCTCACCTACAAACAGGTGAAGTTGGTGAACATCAGAAATG
Rat Unknown T------------------------CTTTGTCTCGTTTAGCGTTTCCTTTGCAGGTGACGGGAACCCGGGACTGGTTTACAGTGATCACT-TCTCTCTC--TTTCCCGTGCAAACAGGTGAAGTTAGTGAACATTAGGAATG
Guinea pig Unknown ----------------------------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown AGTGTGTTTGGGGGGTATTACTGGTATTTAAATCATTTCATTTTTTTCTTGTAGGTAAAGGTAACTAGTGCCAATTTGATAA-----AGT-TTTGATTTCTTCTCATATAC-AACAGGTGAAATTAGTGAACATTAGAAATG

mmu-mir-6897 (chr1:36201097-36201158 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr1:36201072-36201183 - ------------*-------------------------------------------------------------*---------****-----#########################
GACCATCTGAAG-CTACAGTGCTGTGCTGGGGGCAGTGTCACACGCTGTTTTATGACGTAAGTCTCACGGTCTG-TGTTCTTCC----CCCAGGCTCTCAGAAGCATGAGGAATTATG
Rat chr9:35055473-35055583 - AACCATCTGAGGACTGCAG--ATGTGCTGTGGGCTGTG-CTCACACTGGGTTATGACTTAAACCTCATGTTCCGTTGTTCTCTC----CCCAGGATCTCAGAAGCATGAAGAATTATG
Guinea pig Unknown ----------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_98804:7459-7505 + ----------------------------------------------------------------------TCTC-TGTTCTGCCTTTGCACAGGACTTCAGAATCGGGAAGAATTATG

mmu-mir-6898 (chr1:36405527-36405603 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr1:36405502-36405628 - ------------------------------------------------------------------------------------*----*--------------#########################
TCTTCCTTTGTGGGAATGTCTGGGAATCCCTGTAAGGGGAGATGCAGGGAGCCATGCCGAATGATGCTTGGATTCAAGTCTCTT-TGTA-CCTTCTCTACCCAGGATCTCTCCAGTGTGTCCAGCAGCC
Rat chr9:35281490-35281513 - ---------------------------------------------------------------------------------------------------------ATCTCTCCAGTGTGTCCAGCAGCC
Guinea pig scaffold_286453:102873-102982 + TC---CCACGAGGGCACTGCTGGGGGTCGCACCAGTGGTAGTGGC-----------CCGGATGAC--ATTGGCTCA--TCTCTC-CGCTTCTTCCTGTACTCAGGATCTCTCCAGCGTATggtGgtGgg
Rabbit scaffold_200140:133629-133685 + T----------------------------------------------------------------------GCTTG--TATCTTGACCTTTTTTCTCTACTTAGGATCTCTCCAGTGTGTCCAGCAGCC

mmu-mir-6899 (chr1:64089012-64089075 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr1:64088987-64089100 - ------------------------------**-----------*------------------****-------------------------*-----#########################
GAGGCCATCTGCTGAGACTAGCCACCAGGC--AGCAGAACGCA-GCGGGCATGAGATCCTTT----CTGACCATTGTCCTTCTGTGTCTTC-TGCAGGTGAGAAGCCTTACAAGTGCTCATG
Rat chr9:62699495-62699612 - GAGGTCATCTGCTGAGACTAGCCACCGGGC--AGCAGAACCCA-GCGGGTATGAGATCCTTCCTTGCTGACCATGGTCCTTCTGTGTCTTC-TGCAGGTGAGAAGCCTTACAAGTGCTCATG
Guinea pig scaffold_253017:41172-41287 - GCAGACCTTTTCTAAAACTGTCCCCCAAA---AGCAGGACCTGATCAGGCGTG-GATGCTTG-GTGCTCACTGTGGCCCTTTCGTTTCTTC-TGCAGGTGAGAAGCCTTACAAGTGCTCATG
Rabbit scaffold_103141:5092-5211 - ACAGCCCT-TTCCAAGACTGACCACCGGGCACAGCAGAACCCGCTCAGACGCAAGGCGTTTTGTTGCTGACCG-GGCCCTTCCTTCTCTCCTTGCAGGTGAGAAGCCTTACAAGTGCTCGTG

mmu-mir-6900 (chr1:94361060-94361119 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr1:94361035-94361144 - -------------------------------------------------------------------------------------#########################
TTAGGTTAAGTCTTGGTATAGATCCTCATGTGCCAGGAGAAGCCTAGAGCCGTCTGGACTCTGATGGTGATGGGCTCTCTTGTAGGTGTGGACCACTATAATGAAATTAA
Rat chr9:91680397-91680506 - TGAGCGTAAGTCATGACTTAGAACCTCATGTGCCAGAAGAAGCCTGTGGCCGTCTGGAGTGTGATGATGGTGGTCTCTCTTGTAGGTGTGGACCACTATAATGAAATTAA
Guinea pig scaffold_186444:7809-7857 - T-------------------------------------------------------------GATGATGGTGTGCCCTGTTCTAGGTGTGGACCACTACTATGAGGTGAA
Rabbit Unknown G--------------------------------------------------------------GTGACGGT---CGC-CCTCTAGGTGTGGAGCACTACAACCAGGTGAA

mmu-mir-6901 (chr1:95171126-95171187 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr1:95171101-95171212 + -------------------*--------------------*************------------------------**------------------###############################
ACTGGGCTGGGAGGGGTCA-GGTAAGCTAAGTGCAGGAAT-------------GCAGAGGACCTCGTGGTGAAAGGA--CCTTCTGTGTTCTTGCAGCTCCCTCACCCTGCTTCCGGAGCCCATGTAT
Rat chr9:92543958-92544070 + GCTGGGCTGAGAGGGGTTGGGGTAAACTGAGTGCAGGAAT-------------ACAGAGGACGTTGTGGTGAAAGGG--CCTTCTGTGTTCTCGCAGCCCCCTCCCCCTGCTTCCGGAGCCCATGTAT
Guinea pig scaffold_246987:15639-15740 + GCTAGCCCAG--------------------------GCCTGTAGGGGGAGGGGGCAGGACACCCCACAGTGACAGGGACCCTCTTGCATTCCTGCAGTTCCATCCCCTTGCTTCCGGAGTCCGTGTTT
Rabbit Unknown --------------------------------------------------------------------------------------------------------------------------------

mmu-mir-6902 (chr1:95242669-95242732 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr1:95242644-95242757 + -----------------------------------------------------------------------------------------#########################
GACTTACACCTGTTGTTAATCTCCTCTGTGTTCCTCACATTGTCACATGAAGTAGATGTGAATTGTCACCATGTGATGTGTGGGTTCAGTTGACAGGCGGGTTGAATCTGAAGA
Rat chr9:92626545-92626654 + GACTTACAACTGTTGTTAATCTCTTTTGTGTTCCTCAAATTGTCACATGAAGTAGATGTGAATTGTCAC--TG--ATGTGTGGGTTCAGTTGACAGGCGTGTTGAATCTGAAGA
Guinea pig scaffold_289335:42251-42361 + GACTCACGGCTGTGCATAGTCTGTTGTGTGTTCCTCAGAGCATCACACAAAGGAGGCG-GCCTTCTTAC--TGACATGTGTGGGTTCAGTTGACAGGCGGGTCGAGTCTGAAGA
Rabbit scaffold_81366:5339-5398 + ----------------------------------------------------TGGCCGTGAATTCTCAC--TGCCGCGTGTGGCTTCAGTTGACAGGCGAGTGGAATCGGAGGA

mmu-mir-6903 (chr1:135623135-135623222 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr1:135623110-135623247 - ------------------------------------------**-----------------------------------------------------------------###############################
AGACAGGGGAGAAGACCCAAGGTGTCCCTTTTGGGAAAAGCA--GTACTTACCACATGTCTTCAGGTGGCACGCGTGTGTTCACTGTCGTGTGTGTCTGTTTTTCCCAGGTATCATTGACAGCACTGCTGGGGAACAGCG
Rat chr13:46670651-46670749 - AA-------------------GTGTCCCTTTTGTAGAAAACA--G-----------TGACCTCAGGTGGCACATGTGTGTTCAAT---------GTCTGTTCTTCCCAGGTATCATTGACAGCAATATTGGGGAACAGAG
Guinea pig scaffold_284560:6738-6859 - GTGG----GGAAGGATGCAAAACACC--TTTCGTGGGGCGCAGAGTGCT-GGCAAATGACCTGAGGCAGCACACACATGCTCACT---------CTTTCTTCCT--CAGGCATCATTGACAGCACTGTTGGAGAGCAGCA
Rabbit scaffold_83149:2805-2914 - GGGCGGGGGCGGG-----------------------GAGGCA--GCGCCGGGTGGAAGCCACCAGGCAGC---CTCGAGCTCACCGGGGCGCGTGTCTGCTTTT--CAGGCATCATTGACAGCACCGTTGGGGACCAGCG

mmu-mir-6904 (chr1:182517332-182517396 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr1:182517307-182517421 + --------**--------*------------------------------***---*------------------------------------##############################
AGCTGTTT--TGTCTTGC-CTCCATTCATCCTTTCCTGGGGTTAGAGTT---GAG-TGGTCGTAGCCTGTTGCTTCTGATCTCTTACCCCAGACAAGCCCCTGTCTAACATGAAGATCCTGA
Rat chr13:96327608-96327722 + AGCTGTTT--TGTCTTGC-CTTTGTTCATCCTTTCCTGAGAGCGCAGTA---GAA-TGGTCTTAGCCTGACGCTTCTGATCTCTTACCCCAGACAAACCCCTGTCTAACATGAAGATCCTGA
Guinea pig scaffold_213234:3852-3882 - -----------------------------------------------------------------------------------------CAGACAAGCCC--GTCCAACATGAAGGTCCTGC
Rabbit scaffold_190690:39720-39839 - CGCTGCTTCATGTTCTGCTCCTCGTCCACCACCTCCTGGGG-AGCAGTGCCAGGGTTGGCCAT-GCTTCATGATGCTCCTCTCCCTCCCCAGATAAGCCACTGTCCAACATGAAGATCCTGA

mmu-mir-6905 (chr10:24630470-24630539 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr10:24630445-24630564 + -------------------**--------------------------------------------------------*****--------------------#########################
CACAAGTGCCATCCCGTGT--CAGTGTGGGAGACTGGGCAGGTTGGGTTGAATGATTTGATCATGTAGTCACTTAAA-----TAACCTTATCTGCCCGATAGATTGGCGTGGCATTTTATGACATGC
Rat chr1:21015583-21015709 - CACAGGTGCAATACTGTGTGCCAGTGTGGGAGACCGGGTAGGTTATGTTGAACGACTTGATCATTTAGTCATTTACGTAGCCTAACCTTATTTGTTGCATAGATTGGAGTGGCATTTTATGACATGC
Guinea pig scaffold_177844:8637-8676 + ---------------------------------------------------------------------------------------TTGTCTGTTGCCTAGATTGGTGTGGCCTTCTATGACATGC
Rabbit Unknown -------------------------------------------------------------------------------------------------------------------------------

mmu-mir-6906 (chr10:59589524-59589581 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr10:59589499-59589606 + ----------------------------**--------------**-----------------------------------------#########################
TCTGGGGCTGAGAAATACATAGAGAGAT--GGATGGGCAGACGG--ACAGACAGCAGAGCCTACCTGAATTCCGGTCTCCTCTCCAGGGTTGGACAAGAGCCTGGGGGCCAG
Rat chr20:27417317-27417422 + TCTGGGGCTGAGA--TACATAGAAAGAT--GGATGGACAGACAG--ATGGACAGCAGAGCCTACCTGAATTCTAGTCTCCCCTCCAGGGTTGGACAAGAGCCTAGGGGCCAG
Guinea pig scaffold_264532:8246-8344 - GCCAGGGCTGAGA--T----CGAAGGGTAGGGATGGGAAGGTGGGGA-------TGGAACCAGTCTGAATCCTGGTCTGCTCCCCAGGGCTGGACAAGAGCCTGGGGGCCAG
Rabbit scaffold_141356:4026-4096 + C-----------------------AGGA--GGAAGGACAGATGG--ATGG-------AACACGTCCC-------ACCCTTCCCCCAGGGCTGGACAAGAGCCTGGGCGCCAG

mmu-mir-6907 (chr10:77871220-77871290 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr10:77871195-77871315 - ------------------------------------------------------****------------------------------------------#########################
CAGACAGAGGCCTTACCTTCAGGAGGCTTCTGGGACACAGGGAGGCTCGATGGG----TTGGCTGTCTTCTTACTAACGTGCGTTTCTTTTGTGTCCTAGCTCATGAGGATGGTCCTAAGTGAGT
Rat chr20:10599567-10599691 + CAGGCAGAGGCCTTACCTTCAGGAGACTTCTGGGACACAGGGAAGCTTGCTTGGTTTGTTGACTGTCCTCTTACTAACGTGAGTTTCTTTCGTGTCCTAGCTCATGAGGATGGTCCTGAGTGAGT
Guinea pig scaffold_231265:172-198 - --------------------------------------------------------------------------------------------------AGCTCATGCGGATGGTGCTGAACGAGT
Rabbit Unknown -----------------------------------------------------------------------------------------------------------------------------

mmu-mir-6908 (chr10:77907840-77907902 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr10:77907815-77907927 - -----------------********--------------------------------------------**---------------------------#########################
GACCTACAGGGGCCTGT--------CCCCTTGGGAAGCTTGCCTGTCAGGGAGAGCCCCAGTGTGTGGA--TGCTGACACTCTCCCTTGTGCTGGCAGGTGATGGACATGCTGCACTGTATGG
Rat Unknown GGCCTCCCAGGGCCTGTCCCCCTGTCCCCTTAGGAAGCTTGACTGACAGGAAAAGCCACGGTGTGTGGCTGTGCTGACACTCTCTCTGCTGCTGACAGGTGATGGATGTGTTGCACCGCATGG
Guinea pig Unknown ---------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_61778:735-762 + -----------------------------------------------------------------------------------------------CAGGTGATGGACGTGCTACACTCCATGG

mmu-mir-6909 (chr10:78993774-78993835 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr10:78993749-78993860 - --------------------------------------*************-------------------------------------------------#########################
GCACAGTGGCCATGATAGATGTGCAGATAACAGGGGGG-------------CTGGAATGGGCACTGCGGAGAACCATGTGCCTTCCCCGGCCTCCCACAGCCTCTCTGCCTTTCATCATCCTGAC
Rat chr7:11697099-11697223 + GCACAGTGGCCACGATAGAAGTGAAGATAATGGAGGGGAGGGGAGGAGAGTCAGGAATGTGCATCGCAGAGAACCATCTTCCTTCCTCGGCCTCCCACAGCCTCTCTGCCTTTCATCATTCTGAC
Guinea pig scaffold_122016:739-769 - CTGCAGCGGCC----------------------------------------------------------------------------------------------CTGCCCTTCATCATCATGAC
Rabbit Unknown -----------------------------------------------------------------------------------------------------------------------------

mmu-mir-6910 (chr10:79325332-79325397 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr10:79325307-79325422 + -----------------------------------------------------------------------------------**--------##########*##########*#####
CAGGCTTGTGCTTGAAGCTTTGGTTGCACCTGGGGGTAGGGCACCAGTGGGCAGAGTGTCCTGCTGCTCATGGTTTCCACCCT--TTGTCCAGCCATGAGCCA-CCTGAACGGG-CACAA
Rat chr7:11357210-11357318 - Cgggctggggct-ggggctggggctg-------gggctgggTGCCAGTGGACCGAGCATCCCACT-CACATGGCTCCCATCCTTTTTGTCCAGCCATGAGCCA-CCTGAACGGG-CACAA
Guinea pig scaffold_274596:3988-4029 - C-------------------------------------------------------------------------TTCCGCTCC--CT---GAGTCATGAACCAACTTGAACGGGTCACAA
Rabbit Unknown ------------------------------------------------------------------------------------------------------------------------

mmu-mir-6911 (chr10:79740909-79740977 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr10:79740884-79741002 + ----------------------------------------------------------------------------------------------#########################
CCTTAGCTGGTCCCTGGGGACCTTATGGAGTGGGCTGAGTGGGTCTGTGGCATCTACCCCCACAAAGCCTGCCTCAATCACACTCTGTCCACAGGTCACAGAGGTGGTTATGATCTATG
Rat chr7:10944872-10944990 - CTTTAGCTGGTACCCTGGGCCCTCCTGGAATGGGCTGAATGGGTCAGTGGCACCTGCCTCCGCAGAGTCTGCCTCAATCACACTTTGTTCACAGGTCACAGAGGTCGTTATGATCTATG
Guinea pig Unknown -----------------------------------------------------------------------------------------------------------------------
Rabbit Unknown -----------------------------------------------------------------------------------------------------------------------

mmu-mir-6912 (chr10:80072005-80072074 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr10:80071980-80072099 + -----------------------------------------------------------------------------------------------#########################
CTGCAGGGCTGTGTGCTCTATAGCCTGAAGTACAGGGAGGGTGCTCAGGCAGGCATCTGGCTGTAGCAGGCTACCTGAGGGTCTCCTTCCTGCAGGAAAGGAGAACAACTTCCCCCCACT
Rat chr7:10618309-10618413 - CTGCAGGGCT---------ATA-CCTGAAGT--GGGGAGGGGGCTCTGTCAGGCAT-TGGCTGT--CGGGCTACCTGGGGGTCTCCTTCCTACAGGAAAGGAGAACAACTTCCCCCCGCT
Guinea pig scaffold_241675:279-320 + ------------------------------------------------------------------------------GGCTTTTCTCCCTGCAGGGAAGGAGAACAACTTCCCGCCTCT
Rabbit Unknown ------------------------------------------------------------------------------------------------------------------------

mmu-mir-6913 (chr10:80849092-80849157 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr10:80849067-80849182 + -------------------------------------------------------------------------------------------#########################
AGCTCAGAGGCTGTTGGCCCAGCTGTGACCTGGGAGACCAGTCAGGTGTTGGGCATCAAGCAAGCTCCTCTCTACTGATTTGTCTCCTCAGGGGAAGCCCTGGGGGCGATTGGTAA
Rat chr7:9807892-9808006 - -GCTCAGAGACTGTAGGCCTAGCCGTGGCCTGAGGGAGCACTGAGGTGCTGGGCATCGCGCAAGCTCCTTCCTACTGATTTGTCTCCTCAGGGGAAGCACTGGGGGCGATTGGTAA
Guinea pig Unknown --------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_174090:178773-178797 - -------------------------------------------------------------------------------------------GGGAGGCCCTGGGGGCCCTGGGGGA

mmu-mir-6914 (chr10:127819894-127819962 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr10:127819869-127819987 + --------------------------------------------*********************----*---------------------****-------------------###############################
ggcacagctggggcccctcttaaccctgactcctggggtggtgg---------------------tggc-cacagaaacgaggtctttaac----tctgTCCACCTCTTCCCAGGCGCGGTATCCACGACATGTTCCCCCTGCAC
Rat chr7:1674163-1674284 + GGCACATCTGGATCCCCTCTG-AGCCTGACTCCCAGGGTGGTGG---------------------TGGC-CACAGAAACAAGGCCTGTAACTCTGTCCGTCCACCTCTTCCCAGGCGCGGTATCCACGACATGTTCCCCCTGCAC
Guinea pig Unknown -------------------------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_178686:24310-24445 + GGGAGGCATGGAGGGCGTCCTTACCCTGCCT---GGGGCAGTGGCGCGTGGGGGTGGAGGAGGGGTGGCGTACAGAAAG-TGCTG----ACCGAGTCCCTCCACCTCT-CCCAGGCGCGGCATCCATGACATGTTCCCCCTGCAC

mmu-mir-6915 (chr10:127825888-127825956 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr10:127825863-127825981 + ---------------------------------------------------*-----------------**--------------------------#########################
GATCTGGAAGTGGATTGGAGGGCCAAAGACAGGTCAGAGCAGATGGAGGTT-CGTGGTATTTCTCACCC--TCACCAACTTCCTTCCTCGTGCCCAGGACATGAAGATTGTCTGGAGTTGTT
Rat chr7:1680638-1680745 + G-TCTGGAAGTAGATGGGGGCGCTAAAGATTCCACAGAGTAGATGGAGACA-CTTGGTATTTCTCA------------CCTTCTTCCTCGTGCCCAGGACATGAAGATTGTCTGGAGTTGTT
Guinea pig scaffold_277500:34187-34306 + AATCTGAAAGTGGCTTGAAGGTTCAGGGACAGCACAGGACAGATAGAGGAAGCCTGCCATTTCTTCCATTGCCATG--CTTTTTTCCTTATACTCAGGACATGAAGATTGTCTGGAGTTGTT
Rabbit scaffold_178686:31136-31226 + GGCCTGGAAGTGGAGTGGAGCGCC----------------------------CCTGCCTTTTCTCT-GTTGTCACC--CTTTCGTCCTCGTCCCCAGGACATGAAGATTGTCTGGAGTTGTT

mmu-mir-6916 (chr10:127949024-127949086 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr10:127948999-127949111 - ----------------------------------------------------------------------------------------#########################
AAGGGGCTGGAAGGGGAGGTAATGTGCAGGCAGGAGGATGGAGATGAGTCACGGGGTTCTTAGATGCTTGGTCTCCCTCTTCCTACAGTCCCTCTGAGGCTCCCGTTGGGCCC
Rat chr7:1792394-1792503 - AAGGGGCTGGGAAGGGAG-TCGCATGTATGCAGAAGTGTGAAAGTGGGTCACTGGTTTCCTAGAT-CCTGTTGTCTG-TTTCCCACAGTCCCTCTGAGGCTTTGATTGGGCCC
Guinea pig Unknown -----------------------------------------------------------------------------------------------------------------
Rabbit Unknown -----------------------------------------------------------------------------------------------------------------

mmu-mir-6917 (chr10:128021493-128021553 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr10:128021468-128021578 - ----------*--***********************-------------------------------*-----------*******-------*---------------*----------#########################
AGTGTTTTTT-TT-----------------------TTTGGATTGGTAGGAAGGTGTGGAAGGGGAG-TTGTGCCGCAG-------TCTTCAG-CCTGTCACTTCTCTT-CCCACCACAGAGATTCTGTTAGGGGGCGTTTACAT
Rat chr7:1872102-1872195 - A-----------------------------------------TTGGTAGGAAGACATAGAAGGGGAG-TTGTGCTATAA-------TTTTCAG-CCTGTGACTTCTCTT-CCCACCACAGAGATTCTGTCAGGGGGCGTTTACAT
Guinea pig Unknown GGCTTCTCCTACTCCT-----------------------GGTTTGGTGGG---------------------TACTGAAG-------CCCTTAA-CCTTTCACTCTCTTC-CCTACCTCAGAGATCCTGTCAGG-GGTGTTTATAT
Rabbit Unknown GGTGCCCCCTGCCCCCCGCCTGCTCCAGAATGGCCTTTTGGAGCCGGGGGATGGTGGTGGAGAGGAGAGGATGCCACAGCAAGTAGCCCCTAACCCTGTCACTTCTCTTCCCTCCCTCAGAGATTCTGTCCGGGGGCGTTTATAT

mmu-mir-6918 (chr11:4791348-4791405 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr11:4791323-4791430 + ------****----------------***-----*********-------------------****-------******------------------------------#########################
GTAGGG----ATTTGGGGCAATGCAG---GATTC---------TTGTGCTGAGGACGGGATT----AGGTTCT------CTGAAGAATGAGCCTGTGCCCTTCTCACAGCCTACAAAGATTTGCAATCTCGGGA
Rat chr14:85553655-85553775 + GTAGGG----ATTTGGGACAATGGGG---GAGGCTCCCACCCTCCGTGCTGAGGGAGGGATCAGGTAGGTTCT------CTTAAGAATGAGCCTGTGCCTTTCTCACAGCCTACAAAGATCTGCAGTCTCGGGA
Guinea pig scaffold_291160:42832-42951 - GGAGGGCAGGCTTGGGGGCAGTGGGAAGAGGGCC---------CTGTGTTGGGA-AGGGATC----AGAGCCTCTGCGCCTGAGGAACAAGCCTCTGTCTCTTCCACAGCCTACAAAGACCTGCAGTCTCGGGA
Rabbit scaffold_201587:107938-108045 - GCAGGG----CAGTGGAGTGA--------GGGCC---------TCGTGTCGGGGAAGGGACG-----CGATCTCTGTGTCTGAGGAGTCAGCCAGGGCCTTTCCCACAGCCTATAAAGACCTGCAGTCTCGGGA

mmu-mir-6919 (chr11:50045747-50045808 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr11:50045722-50045833 + ----------------------**************--------------------**----------------------------------*********-------*----#########################
GCAGAGTGGGTCCTACCTGCCT--------------CTCTGCGGTAGGCCACTGGA--GGTGGAATTGTCTCTGCCTCTGAGGCTCCTCCTC---------CTGGCCC-ACAGGTGGAGGACCAAACAGAACCTCGAT
Rat chr10:35782670-35782794 + GCAGAGTGGGTCCTCCCTGCCT----CAGTGG-GCTCTCTGTGGTAGGCCACTGGA--AGTGGAATTGTCTCT-CCTCTGAGGCTCCTACTCC-----TTCCTGGTCTAACAGGTGGAGGACCAAACAGAACCTCGAT
Guinea pig Unknown ------------------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_207870:48159-48292 - CCTGCGGGGTTTCT--GAGTCTCCACCAGAGGAGCCCTGCATGGCCGGGTGGGGGGAGGGTGGCAATGTCACT-TCTCAGTGGCAGCCACACCCAAGGTCTCTGGCCT-GCAGGTGGAGGACCAAACAGAACCTCGAC

mmu-mir-6920 (chr11:53222699-53222769 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr11:53222674-53222794 + -*---**-------*********************-----------------------------------------**-----------********----*******-----------------------------#########################
T-TGC--TCAAATG---------------------AAGCCAGCCCTATATTCCTACACAATGGAAAGACTGCTTGT--AGATGGCGCCA--------TGTC-------TATATACACTGCCCTTTTCCATTGCCTAGCCTGAGATGCCAGTCATTATTGTAC
Rat chr10:38869779-38869896 + CT------CATATG---------------------AAGCCAGGCCTCTACGCCTATCTAATGGAAAAATTGCCTGT--AGATGTAGCCA--------TGTC-------TAAATACACTGCCCTTTCCCATTGCCTAGCCTGAGATGCCAGTCATTGTTGTAC
Guinea pig scaffold_277048:56402-56557 + TCTGC--TTTGATGTTCAGTCTTACGCTCTTGGAAGAGTCAGTCCTCTACTCTTGCATGTTGCAAAGGTTGTCTGTGCAGTTGTGGCCAGAGTCTGCTGTCCTGG---TAAATATGCTGCC-TTTTCTATTGGCTAGCCTGAGATGCCAGTCTCTGCTGTAC
Rabbit scaffold_204311:42429-42566 - TCTGCTGTCA------------------------AAAGCCAGTGTTGTACTCTTGCAAAATGCAAAGATAGTCTGTGCAGACGTGGCCAGAGTCTGCTGTCCTAGTAATAAGCAAACTGCCCTTTTTCATTTGCCAGCCTGCGATGCCAGTCTTTGCTGTAC

mmu-mir-6921 (chr11:60014040-60014115 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr11:60014015-60014140 - ####-------------------------------------------------------------------------------------------------#########################
GAGGGTGAGTCCCACTGTTCTCACACTGAGGGGCATGAGGTAGGAAGCCGGGAGTGGGGGGACAGTAAATCTGAAACGGGTGACTACTCCTTGCCTCTCAGGTATTCCTACATGAGGCCACAGCTC
Rat chr10:46463162-46463280 - GAGGGTGAGTACCTTTGTTCTCACACTGTGGGGTGTGAGGCAG-------GGAGCGAGGGGACAGTCATCCCGAAACTAGCCATTACTCCTCACCCCTCAGGTCTTCCTACATGAGGCCACAGCTC
Guinea pig scaffold_286175:34998-34997 - ------------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown ------------------------------------------------------------------------------------------------------------------------------

mmu-mir-6922 (chr11:60015764-60015829 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr11:60015739-60015854 - ----------------------------------------------------------------------------------*---------#########################
GGTTGGGGCCCCAGCTTATTAAGGCATTGGTGTGGGAGGGGACTGTAGAGAGGAGGGTGCCTAACCTCTGTTCTGCTCACCC-TTCTCACAGTGGATCCGCTGGCCCAGGTGACCCG
Rat chr10:46464924-46465040 - GGTTGGGGCCCCAGCCTACCAAGGCATCGGTGTGGGAAGGGACTGTAGGGAAGAGGATGCCTAATCTCTGTTCCACCCACCCCTCCTCACAGTGGATCCACTGGCCCAGGTGACCCG
Guinea pig Unknown ---------------------------------------------------------------------------------------------------------------------
Rabbit Unknown ---------------------------------------------------------------------------------------------------------------------

mmu-mir-6923 (chr11:66913306-66913377 +)

mirtron (novel)

Species Coordinate Alignment
Mouse chr11:66913281-66913402 + #########################------------------------------------------------------------------------#########################
GAGGGTCCAGCTGCTGCACACCCAGGTGAGGGCAGGAGGATTGGGGTGTGAGGGTCCACCCCAGACGCACTGTATGACACTCCCTCCTCCTCCCCAGAACACAAGCCTCATCCACACCAAGA
Rat chr10:53798213-53798334 + GAGGGTTCAGCTGCTGCACACCCAGGTGAGGGCAGGAGCATTGGGGTACGAGGGTCCACCTCAGACGCTGTGTATGACACTCCCTCCTCCTCCTCAGAACACCAGCCTCATCCACACCAAGA
Guinea pig Unknown --------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown --------------------------------------------------------------------------------------------------------------------------

mmu-mir-6924 (chr11:69695534-69695596 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr11:69695509-69695621 - -----------------------------*******----------------------******----------****--------------------*-------#########################
TTAAGGAGTGACACAACTCAAGAATTGGA-------CAGAGGATGGGGATTTGGCGAA------GTTCCAGGTC----TTTTACTCCTTAATCCCCAC-CCTTCAGGCTACGATTGGCAAAGATGAGGGAG
Rat chr10:56725972-56726100 - TTAAAGAGTGATGCAACTCAAGAATTGGGAGTTGTTGAGAGGATGGGGAGTTGGAGAA-GAAGAGTATGAGGTCTTATTTTTACTCCTTAATCCCCAC-CCTTCAGGCTACGATTGGCAAAGATGAGGGAG
Guinea pig Unknown -----------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_211229:2206-2308 - --AATGAGACACCCAGCTCAAAGGTTGGG-------G-------------------AAGGGGGAACAAGGGGACCGCCATTCATCCCTTAATTCCCTCTCCTCCAGGCTACGCTTGGCAAAGATGAGGGAG

mmu-mir-6925 (chr11:70519492-70519561 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr11:70519467-70519586 + #------------------------**----------------------------------------------------*-----------################################
GGTGAGCCCTGAGGGTTGGAAGGAG--AAGCCTGAGGAAGAGAAGGCTTGGACTGACTCATCCTGATTACCGTCCCCTT-TTATCCCTCAGCAATCAAAGAAGCGGAAGTCGGATTTCATCCC
Rat chr10:57586048-57586169 + GGTAAGCCCTGAGGGTTGGGAAGAGAAAAGTCTCAGGAAGACAAGGCATGGACTGATTCACCCTGA-TACTGTCCCCTTTTTATCCTTCAGCAATCAAAGAAGCGGAAGTCGGACTTCATCCC
Guinea pig Unknown ---------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown ---------------------------------------------------------------------------------------------------------------------------

mmu-mir-6926 (chr11:74681629-74681696 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr11:74681604-74681721 - ------------------------------------------------*---------------------------------------------#########################
GCTCGGAAACTTTTGAAGGCCTGTGTCGGGTCAGTGGGGTGAGGGATG-GTGATGAAAGAGCCCCAGCTAAATTCACCATCCCTGTCTCCATAGTGGGACCCTGTGCCTTGGAATACAC
Rat chr10:62184378-62184493 - GCTTGAAAAC--TTAAAGGCCTGTATTGGGTTAGTGGGCTGAGGGACGAGTGAGGAAAGAGCCCCAGCTA-ATTACCCATCCCTGTCTCCTTAGTGGGACCCTGTGCCTTGGAATACAC
Guinea pig scaffold_240899:1934-2049 + GCCTGAGAGA--TAAGAGGCGTATGTGGGGCTGAA-AGGTGAGGGGCAAATGGTAAGGGAGGCCACTCTAAGCTAACCATCCCTGTTGCCACAGTGGGACCCTGTGCCTTGGAATACAC
Rabbit scaffold_209496:47577-47690 - GTCTGAGA----TCAGAGGCCTGTGCTTGGCCACTGTGCCGAGGGACAGATGCCAATGGAGCCCCA-CTAAGCTGGCCATTTCTGTCTCCACAGTGGGGCCCTGTGCCTTGGAATACAC

mmu-mir-6927 (chr11:97538374-97538461 +)

mirtron (novel)

Species Coordinate Alignment
Mouse chr11:97538349-97538486 + #########################-------------------------------------------*-------------****************--------------------------------#########################
GGGCCCTATGGACTGCTTCCTCAAGGTGAGGGGATCCAGCCCAGGCTAGGGGGAAGAATCCCTGCCCG-TGGCCTGAGCTGG----------------CTCCCCTGCAGCTCCCGTCTCTTCTCGGTCAGCTGGCAGCAGTGACTCCCTGAGCGT
Rat chr10:86425805-86425942 + GGGCCCTATGGACTGCTTCCTCAAGGTGAGG-GATCCAGTCCAGGGCAGGGTGAAGAAGTCCTGCCTGGCAGCCCGAACCGG----------------CTCCATTGCAGCTCCTGTTTTCCCTCCGTTAGCTGGCAGCAGTGACTCCCTGAGCAT
Guinea pig scaffold_209118:1045-1178 - GGGCCCTATGGCCTGCTTCCCCAAGGTGAGG-GGTCCTGCCCAGCCCAGAAGTGGGAGTCTCTGGC----TGCC---ACAGGGCCCCTTCCAACCCTG-------------GCTGCCCTGCCTCCCACAGCCAGCAGCAGCGACTCCCTGAGCAC
Rabbit Unknown -----------------------------------------------------------------------------------------------------------------------------------------------------------

mmu-mir-6928 (chr11:100891654-100891723 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr11:100891629-100891748 + -------*******----------------------------------------------------------------------------------------#########################
TATCCTG-------TAGTAAGCTAGGATTAGTTTCCAAGGGGATTTGCATGGACTGCACTAAGACACTTCAGTGTTCCTAAAGCTGTTCCTGTACTCTCCAGGTTCCGAGCCTCCCTCTATCCCTGC
Rat Unknown -------------------------------------------------------------------------------------------------------------------------------
Guinea pig Unknown -------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_193456:59325-59436 + CATCTTGGTCCTTCTAGGGTACTGGGATTACTGTCA---------------GACTGTTTGAAGTAGGTTTGCCGTTCCTAAGGCCGGGTCTGTGCATTCCAGGTTTCGAGCCTCGCTCTATCCCTGT

mmu-mir-6929 (chr11:101280501-101280567 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr11:101280476-101280592 - -----------------------------------------------------------------------------**---------------#############**********###########**#
CGGGATTCCAGGAGAGCAGCTGGGGGAGGGAGGGAGGAGCAGCATCTGTGttGGgTGggtTtGtttggtgtGGTGgT--GTgTTgTTgTTggtGGtTGtTTgTGtgA----------GCTAACTAGCT--T
Rat chr10:90016807-90016915 - TGGGATTTTAAGAGAGCAG----GGCAGG------TGAGCAGCATCTGTAAAGGTCGCCATAGAAACCACAGGTGCTTTGTCTTCTCCTTCCAGGATGATTCTGACA----------ACTAACTAGCT--C
Guinea pig Unknown -----------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_206706:34803-34910 - CAGAAAATCACGAAAGGAT-----------------GACCCGAGTCTTCC---CTCCTCGCAGAGCTCATGTGTACTTTGTCT---CCCCCCAGGATGATTCTGACAGTGCCGACGCACCAAGTACCTGAC

mmu-mir-6930 (chr11:102266234-102266301 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr11:102266209-102266326 - #------------------***********************-****-*------------------------------------------------------------------**********------#########################
TGTGAGTACCCTAGTCATG-----------------------G----C-TGGGTAGGGAAGGGGGTGCTTGAGAGGTTTGGGAGCCCTTAAGTGATTTTCCTGGCCTCTCCATAC----------TCCCAGGGTGATGACCGTGCCAGCTACTGCT
Rat chr10:91512756-91512900 - TGTGAGTACCCTAGTCATGGGGCGTTGCCTTCCCTTGACTCCGCTGGC-AGGGTGGGGAATGGGGTGCTTGAAAGGTTTGGGAGCCTTTAAGTGATTTTCCTGGCCTCTTCATTC----------TCCCAGGGTGATGACTGTACCAGCCACTGCC
Guinea pig scaffold_102620:815-928 - TGTGAGTCCCCA--TCCT-----GCTGTCCTTCCTC--ATCAGCTGGTTAGGGT-------------------------GGGACCCCC--------ACTCCAGGTCTCTTTTCACTTTGTTCCCACCACAGAGTGATGACCGTGCCAGCCACTGCA
Rabbit Unknown ------------------------------------------------------------------------------------------------------------------------------------------------------------

mmu-mir-6931 (chr11:102861162-102861235 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr11:102861137-102861260 - ----------------------------*--**********-------------------------------*----------**----------***---------***---------#########################
GAAAGAGCCTTGGAGTCCCCCGTCAGTC-AC----------TGGGGTGGGGAGTGGGGGACTTCTGAATCAC-TAGAGGCTCT--GGAATGACCC---AACCTCTTC---ATACCCCAGTTGTCCAGCCAGGGTATCCTGCCCA
Rat chr10:92171090-92171218 - GAAACAGCATTGGGTCCCCCCATCAGTCTGCCTCTGATCACCAG------GGGCGGGGAGACTCTGGATAGC-GAGAGGCTCT--GGAGTGACCC---AGCCTCTTC---ATACCACAGTTGTCCAGCCAGGGTGTCCTGCCCA
Guinea pig scaffold_194466:3818-3928 - GGCACACCTC-AGGTT--CTTGTCACTTCACCTCTGGACATTAG------GGC--------C------------TGTGGCTCC-AGGACTGACCCCTCCACCTCTTC---CTTCCATAGTCATCCAGCCAGGGTACCCTGCCCA
Rabbit scaffold_173473:48281-48406 + GAAGCACCCC-GGGTT-CCCTGTCATTC-GCCTCTGATCACTTG------------GGATCCTCTGGCTTTCCCAAGGGCTCTGGGGAGTGATGC---AGCCTCTTCCTCCTGCCACAGTTGTCCAGCCAGGATACCCTGCCCA

mmu-mir-6932 (chr11:107499036-107499093 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr11:107499011-107499118 + ------------***-*--------------------------------****----------------*------**********----------------#################*########
ATAAATTAGTGT---T-GGAATTGGATGGAGTCTTTGTAGGTGAAGTAG----ACTTGGCTGACAGATG-CTCTGT----------TCTGCTTCCTCTGCAGCTACACCTCTGAGCTTT-TCTATGAG
Rat chr10:97042048-97042153 + ATAAATTAGTAT---T-AGAATTGGATGGAGCGTTTGTAGGTGAAATAA----ATTTGGCTAACAGATT---CCTT----------TGTTCTTTCTCTGCAGCTATACCTCTGAGCTCT-TCTATGAG
Guinea pig scaffold_290735:7045-7160 + ATAAAACTATATTATT-AGAATTT---GGGG-TTTTGTGGGAGAGGTAGAATTATTTTGTTGACAGATTacactttt------gaattttttttctctgcagtTATACCTCTGAGCTTT-TTTATGAG
Rabbit Unknown ATAAAGCAGTATTATCAAGAAGTGACTGATTTCTTTATGGGTAAAATTC----ATTTTGATGATAGATTATTCTTTTCCCCCCATTTTTTCTTTTTCTGCAGTTACACTTCTGAACATTATCAATGAA

mmu-mir-6933 (chr11:117863584-117863664 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr11:117863559-117863689 + ------------***------------***********************************************---------**----------------------------------------------*--------------------**-------#########################
CAGGTAAAGTGA---GGCTCCTGGGGA-----------------------------------------------TTGGTCTGT--CTGGCGGCAGTCAGGATACCTGTCTTTCCTGGTAGGAATGAGTTAC-AGGTGTTTCCTCTGCCGTCA--CACTCAGGTAGGAAGAACTCTCGCACTATGCT
Rat chr10:107994411-107994542 + CAGGTAAAGTGAGGAGGCTCCCAGGGAC----------------------------------------------TTGGTCTGT--CTG---GCAGTCAGGACACCTGTCTTTCCTGGTAGGAATGAGTTAC-TGGTGTTTGCTCTGCCATCA--CACTCAGGTAGGAAGAACTCTCGCACTATGCT
Guinea pig Unknown ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_94470:13262-13427 + CAGGG-----------TCCCCTGGCGGCGTGGCCGATCCAGGTGGGCAGTGCGGTCTCCGGGTGCCCACTGGGGGTGGTCCCTCCCTGCGGGCAGGCGGG-----CGTCTGGCCC----GGCGTCAGCTGCCCCCCGTTTCCTCTGCTCCCATACATACAGGCAGGAAGAACTCGCGCACGATGCT

mmu-mir-6934 (chr11:119015390-119015451 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr11:119015365-119015476 - -------------------------------------------------------------------*****--------****-----**----****---#########################
TGGAGGGACCCAGCACTGTCACAACAGGCCTTGGTGGAGACAGCAAGGGTGGGATGGTTCAAGCCAC-----CTCTGCTC----CTGCC--CCAC----CAGGAGGATCCTGTTGAACTATGCTGTG
Rat chrUn:51980009-51980123 - AGGAGGGACCCA-CAGTGTCACAACAGGCCTTGGTGGAGATAGGAAGGGTGGGATGGCTCAAGACAC-----CTCTACTCCCCACTGCC--CACC----CAGGAGGATCCTGCTGAATTACGCTGTG
Guinea pig scaffold_257269:36129-36238 - AGGAGAAAGCAA-CCCTG-GACAGCAGGC---AGAGCGGGCAGCCAG-GTGGC------CAAGTCAGCCCTCCTCTG-----CTCTGCGTGCCACCTCGCAGGAGGATCGTGCTGAACTATGCCGTG
Rabbit Unknown -------------------------------------------------------------------------------------------------------------------------------

mmu-mir-6935 (chr11:120208664-120208727 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr11:120208639-120208752 - -------------------------**----------------------------------------------------------------#########################
ATTTGTGGCATGCAGCATGCAGAGT--GTGGGTGTGGGAGGCTCAGGGCCCCTGCTACTCACTCACTCAGGTGTTCTTTGTCTTTCCACAGATAATGTTTGAAACCTTCAATACCC
Rat chr10:109775136-109775249 - ATTTGTGGCATGCAGCATGTAGAGT--GAGGGTGTGGGTGGCTCTGGGTCCTTGCTACTCACTTACTGAGGTGTTCTTTGTCTCTCTGCAGATAATGTTTGAAACCTTCAATACCC
Guinea pig scaffold_199961:1402-1509 - ATTTGTGGCATGCAGCATGTAGTGTGTGAGACCATGGGTGGCGCTGGGTTCCTTCCG----CTGACGGAGA----CCTCATTGTTCTCCAGATCATGTTTGAGACCTTCAACACCC
Rabbit Unknown --------------------------------------------------------------------------------------------------------------------

mmu-mir-6936 (chr11:120486137-120486190 -)

3p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr11:120486112-120486215 - #########################-----**************************-------------------------------------------***************------------------#############
GCAGCAGCGGGAGCGCCTCCGCCAGGTGAG--------------------------CCACTGCCGTGCCCGCGCTCGCGCCGGCGCGCGCGGTCGCTCA---------------CCCGCTGCTCGTCCGTAGGTGTCACGCATCC
Rat chr10:110016152-110016255 - GCAGCAGCGGGAGCGCCTCCGTCAGGTAAG--------------------------CCACTGCCATGCCCGCGCTCGCGCCGGCACGCGCAGTCGCTCA---------------CCTACTGCTCGTCCGTAGGTGTCACGCATCC
Guinea pig scaffold_257933:47059-47177 - ACAGCAGCGGGAGCGCCTTCGCCAGGTAGG--------------------------CCGCCGCCAGCCTCGCGCCCGCGCTCGCCCACACTGTCGCTTATGCCTGCCCACCCATCCGCCCGCCCACCCGCAGGTGTCACGCATCC
Rabbit scaffold_108698:1462-1578 - GCAGCAGCGGGAGCGCCTCCGCCAGGTAGGggGgggGgggGgGggGgGggggGgGTCCGTGTCCGTGGC-------------GCGCGGGCCGCCTCTCA---------------CCGCCCGCCCGCCCGCAGGTGTCCCGCATCC

mmu-mir-6937 (chr12:29364190-29364254 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr12:29364165-29364279 + ------------------------------------------------------------------------------------------#########################
ATACCAAGAATTATTCACTGTAGTCTAGCTGTAAGGGCTGGGTCTGTGTGATCGGTCTCCAGGAAACTCACAGGTTCCCCCTTGCACTAGATCAAGATGTTCTTTGAGGAACATC
Rat chr6:46556640-46556748 + ATAACATGTATCATTCATTGTAGTCCAGCCGTAAGGGCT------GTGTGACAGGTCTCCAGGAAACTCACAGGCTCCCCCTTGCACTAGATCAAGATGTTCTTTGAGGAACATC
Guinea pig scaffold_235499:7237-7285 + TCACCAGGACCCA------------------------------------------------------------------TGTTCCCCCAGATCCGGATATTCTACACGGAGCACC
Rabbit scaffold_164680:5686-5764 + GGGTCAGGG----------------------------CC------GC--GAGGGCTCTCCAGGACGCTCACGCGGTTCCTCCTGCCCCAGCTTAAGATGTTCTACGAGGAGCACC

mmu-mir-6938 (chr12:86586873-86586935 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr12:86586848-86586960 - --------------------*---------------------------**--------------------*---------------------#########################
TCATAGCAGCTTTTGAAAAT-GATGGAGTGTTTGGAGCTAGCTCCAGA--GAGAGTGAAGTCATGCTTGT-CATCTGGGGCTGTCTCCTTAGGTCTTACCACAAACATTTAGAAGAT
Rat chr6:109292993-109293106 - TCCTAGCAGCTTGTGAAAAT-GATGGAGTGTTTGGAGCCAGCACTGGA--GAGAGTGAAGTCATGCTTTTACATCTGGGGCTGTCTCCTTAGGTCTTACCACAAACATTTGGAAGAT
Guinea pig scaffold_179449:115-231 + TTGTGCCAGATTTTGAGCTTCTATCAAGCATTTGGAACTAGTAGTGAAATGTAGGTGAtGTttTtTTTTTtgtTTTGtGGTTATCTCCTCAGGTGTTACCACAAAAATCTGGAAGAT
Rabbit Unknown ---------------------------------------------------------------------------------------------------------------------

mmu-mir-6939 (chr12:113897488-113897562 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr12:113897463-113897587 - ----------------------------------------------------------------------------------------------------#########################
GGTGGCCTGCAGCTTCAGGACCAGGGAGCCAGGCAGCTGGTTGGTGGAAGCCATGCAACAGCGCCCCCAGGTGCCTGAGGCCTCACTTGACCCGCTGCAGGGAAGAATGGGCCACCGCCATTCAG
Rat Unknown GGTTACCTGCAGCGTCAGGACCAGGCAGCCAGACAACTGGAGGGTGAAGGCCATGGCACAGCT----------CCTAAGGCCTCACTTGACCC-CCGCAGGGAAGAGTGGACCACCGCCATTCAG
Guinea pig Unknown -----------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown -----------------------------------------------------------------------------------------------------------------------------

mmu-mir-6940 (chr12:113971533-113971602 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr12:113971508-113971627 + ----------------------------------------------------------------------------------****-------------#########################
CTAGTCTCAGATTTGTTTGTGGAGGAGAGGCAGGGCTGGCTGGAAGGTTTTTCGAGGCTGGCTCAGCACCCCTTACCTTCCG----TGCTTGCCCGCAGCACGAGAAGTACACCAGCCAGCTGC
Rat chr6:137718656-137718779 + CTAGTCTCAGATTTGTTTGTGGAGGAGAGGCAGGGCTGCCTGGAAGGTTTTTCGAGGCTGGCACAGCACCCCTTACCTTGCTTGCTTGCTTGCCCACAGCACGAGAAGTACACCAGCCAGCTGC
Guinea pig Unknown ----------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown ----------------------------------------------------------------------------------------------------------------------------

mmu-mir-6941 (chr12:114158694-114158752 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr12:114158669-114158777 - ------------------------------------------------------------------------------------#########################
GAAGCTGCCTGGTAGGGCCCGCGTGGCACCCCTGGGGGACTGACGGGTAGCTGCTGCCGCCAGCTAACTCGGCTGCTCCCAAAGAGGAGCTGCTGATTGAGCGGGTGTC
Rat chr6:137922010-137922118 - GAGGCTGCCTGGTAGGGTCTGTGTGGCATTCCTGGGGGACTGCCGGGTAGCCGCTGCTGCTGGCTAACTCGGCTGCTCCCAAAGAGGAGCTGCTGATTGAGCGGGTGTC
Guinea pig Unknown -------------------------------------------------------------------------------------------------------------
Rabbit Unknown -------------------------------------------------------------------------------------------------------------

mmu-mir-6942 (chr13:21488447-21488507 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr13:21488422-21488532 - --------------------------------------------------------------------------------------#########################
TCTTTGGCAGTTTCCTTGGAGTCCTGGGCCTAGGAGGAGGGGAACATTTGCAACTATAGTGGCTTATGGTTCTCTCCACCTCTCAGTAGTCTTTTACAGAAATACAACTCA
Rat chr17:50868625-50868732 + TCCCTAGCAGTTTCTTTGGGGTCCTAAGCCTAGGAGGAGGGAAACATTTGTAACTACAGTGGCTTATAGTTATCTCCACCTCTCAGTA---TTTTGCAGAAATACAACTCA
Guinea pig Unknown ---------------------------------------------------------------------------------------------------------------
Rabbit scaffold_200697:26553-26652 + GCGTCCGGGGTGTCCT--GGACCCTTGGCATGACAGCAGGGGGCCACCTGCAGCTCTCCTGGCTAGCGGCGATTG---------AGGACTCCTCTGAAGATACACAGCTCG

mmu-mir-6943 (chr13:55554467-55554532 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr13:55554442-55554557 + ####-------------------------------------**-----*---------------------------------------------#########################
CATGGTGGGTGAGAAGGCCCAAGTGGGAGATGGGGTGAGGT--TGGAA-GCTAGGCCTATCAGTGAACCCACCTGCTTCCATACCCCTACCCAGGCCACATTCGGATCTCGGACCTGGG
Rat chr17:15228951-15229065 - CATGGTGGGTGAGAAGGCCCAAGTGGGAGGTGGGGTGAGAT--GGGAAGGCTTGGCCCATCAGTGGACCCACCTGCTTCA--ATACCCAACTAGGCCACATTCGAATCTCCGACCTGGG
Guinea pig scaffold_276846:57762-57876 + CATGGTGAGTGGGGAGAGACAAG-AGTGGGTAGGGTGAGTT--GGGGAGGCCTGGGCCCT-AATACGCCCACCTGCTTCTCCATTCTCATTTAGGCCATATCCGCATCTCTGACCTGGG
Rabbit scaffold_109473:4627-4742 - CACGGTGGGTGGGGGCCCCTGGG-GGCGGGGAAGGGGAGGTTAGGGGAGGCCTGGCCCATGAATGAG--CGCCTGCCCCGTCCTGCCCACACAGGCCACATCCGCATCTCTGACCTGGG

mmu-mir-6944 (chr13:55579042-55579137 -)

mirtron (known)

Species Coordinate Alignment
Mouse chr13:55579017-55579162 - #########################--------------------------------------*----------------------------------------------------------#########################
GAAGAAGTCGGAGTCAGAGGTGGAGGTGAGAGCGGGGGGAGTGGCAAGTGAGACGGATGGGCG-GGGCTGGCTCAGACTGCTAGCCCCGCCCAGCTCTCTAACTCTTCCCTTGTGCCCTCAGGAGGCGGCTGCCATCATTGCCCAGC
Rat chr17:15204789-15204934 + GAAGAAGTCGGAATCTGAGGTGGAGGTGAGAGCGGG-GGAGTGGCAAGTGAGACAGATGGGCAAGGGCTGGTTCAGACGGCTAGCCCTGCCCAGCTCTCTAACTCTTCCCTTGTGCCCTCAGGAGGCAGCTGCCATCATTGCCCAGC
Guinea pig Unknown ---------------------------------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown ---------------------------------------------------------------------------------------------------------------------------------------------------

mmu-mir-6945 (chr13:55608986-55609053 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr13:55608961-55609078 - ################################################################*################**######################################
TGCTGTCACCAGAACCCGTGCACATCACGTCCTGGGAGGGGCAGCCCCTGGTGCCCACAGAACC-AGAGGTTCTGAGCTCT--GCCCTTCCCATAGACAGTTGCTCAGACAGCCGGTCCCC
Rat chr17:15174659-15174775 + AGCTGTCACCGTAACCCATGCACATCACATCCTGGGAGGGGCAGCCCCTGGTGCCCACAGAACC-AGGGGTTCTGAGCTCT--ACCCT-TCCATAGACAGCTGCTCAGACAGCTGGTCCCT
Guinea pig scaffold_283138:101416-101533 - ACCTGTCACCCTAACCCATGGGTACA--AACCTGGGAGGGGCTGCCCCCACTGCCCATAGTAGCGTGTGGTTCTGAGCTCCCCACC-TTCCCACAGACAGCCGTTCCGACCGCTGGTCCCC
Rabbit Unknown -------------------------------------------------------------------------------------------------------------------------

mmu-mir-6946 (chr14:21509857-21509925 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr14:21509832-21509950 + -----------------------------------------------------------------------*-----------------------#########################
gagagagagagagagaaaagaaaagaaaagaaaagggagagaaagaAATGCAAGGTGGGCAAAGCTATTTG-ACATTTCTTCTCTTCCCTTTCAGACTCTGTTTCAGCCTCAGACAGGTA
Rat chr15:3831730-3831848 - TTTCTGAAGGTTTTGAAAGGCTGAGTTTCCCGTTTTACGTGGACGGTTTTCAAGTTGGGCAAAGCTCTCTG-ACATTTCTTCTCCTCTTCTTCAGACTCTGTTTCAGCCTCAGACAGGTA
Guinea pig scaffold_289854:73241-73308 - ---------------------------------------------------AAAGAGGGCAGAGCTGTTTGAATATTTCTTCTGCTCCCC-CCAGACTCTGTTCCAGCCTCAGACGAGTG
Rabbit Unknown ------------------------------------------------------------------------------------------------------------------------

mmu-mir-6947 (chr14:30802074-30802138 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr14:30802049-30802163 + ----------------------------*------------------------********************-----*************************---------------------------------#########################
GCTGGAGGAGAGCCACCTTCTGTGTGGG-CTCATCCAGTGGAGAGGCTCGTGC--------------------ACGCT-------------------------CCTACTGACAGCAGCCTCTTTCCCTGGCATCAGGATATCTCCGGACTTCAGGACCATG
Rat chr16:5328465-5328595 + GTTGGAGGATAACCACCGTATATGTGGG-CTCGTACAGTGGAGCGGCTCGTGTAGAACT-GACGGGGTTACTCACACT-------------------------CCTACTGACAGCG---TCTTTTCCTGGAATCAGGACATCTCCGGGCTTCAGGACCATG
Guinea pig scaffold_280099:2036-2175 - GTTGTGGGATAGCCTTTTTATGTGTGAGATTTAAATGATGGAGAGGCTTATGCAGAATTTGAGGTG-----------------TTTACATGCATT-TTACTGATTTACTGACAGCA---TGTTTTCCTGGAATCAGGACATCTCTGGGCTTCAGGATCATG
Rabbit scaffold_203207:87002-87124 + GT-GTGGG---GCCTTCCTG-GC----------GGTGACGGAGAGGCTCACGC--------------------GTGTTTTCGGTTCACGTGTGTTGTTGCCGGTCCACTGACGATG---TCTTCTCCTGGAATCAGGACATCTCTGGGCTTCAGGACCACG

mmu-mir-6948 (chr14:55261886-55261947 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr14:55261861-55261972 - ----------*************************-----------------------------------------------------------------------------#########################
ACAGTGACCC-------------------------CAGAAGCACAGCCTGGGATCAGTTCAGACAGGACTGTGACACACTTCTCTGCCTCTGTCCTTCCTGTCTGACCACAGATTGTTCtGttGGtGGgtGtGgttG
Rat chr15:32720723-32720858 - ACAGTGACCCCGAGCTAGGAGTTCAGGGTCTAGGCCAGAAGCACTAGCTGGGGTCAGTTCAAACAGGACTGTAATTCAG-TCTCTGCCTCTGCCCTTCCTGCTTGACCACAGATTGTTCtGttGGtGGgtGtGgttG
Guinea pig Unknown -----------------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_141469:445-494 - ---------------------------------------------------------------------------------------CTCTGCCTTTCCCACCCGGCTGCAGATCGTTCtGttGGtGGgtGtGgGGG

mmu-mir-6949 (chr14:56701238-56701305 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr14:56701213-56701330 - -----------------------------------------------------------******************----------------------------------#########################
ttTttttTttttttttTttttAACAGGGAGAAAGTGGGTCTAGAAAGAGGTGAAAAGAG------------------TATTTACTAAAACTTCCCCTTTTTCTATCCACAGGGTGACTCTGGCGGACCCTTTGTGT
Rat chr15:34601635-34601737 - GA-----------------AGAACATGGAGAAGATGGGTCTGGAAAGAGGTGATAGGAG----------------GCTATTCAATAATACTTCCCCTTTTTCTGTCTACAGGGAGACTCAGGGGGTCCCTTTGTGT
Guinea pig scaffold_256147:71603-71689 + AC-----------------AGA--------------------------GGTTCAAAGACCATCACCAGGAAGAGGCCTATTCCATA---TTTTCC---TTCTTGTCCACAGGGTGATTCTGGGACTCCCCTTGTGT
Rabbit Unknown ----------------------------------------------------------------------------------------------------------------------------------------

mmu-mir-6950 (chr14:70092055-70092127 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr14:70092030-70092152 + ------------------------*----------------------------------------------*---------------------################################
CAGCTTTTCTTAGGGAAGACCCAG-GCTCTGTCCTGGAGTGGAGGACAGTCAGAAAGGCAGTTGTAGCATT-CTCTGTCTTGATCCTCTCCAGGTTGTCATTAACCCCAACTATGAAGTGCCAGA
Rat chr15:50067910-50068021 + ---------TTAGGG-ACACCCAG-CCTCTGCCCTGG-GTGGAGGGCAGCCAGAAAGGCAGTTGCAGCATT-CTCTGTCTTGATCCTCTCCAGGTTGTCATTAACCCCAACTATGAGGTGCCAGA
Guinea pig Unknown ---------A-------------GCCCTGAGCTCCGG-GTACAGGATGACCAAGGAGGGACTCGCAGCTTCCCTCTGACTTGATTCCTCTCAGGTTGTCATTAACCCCAACTACGAGGTCCCAGA
Rabbit Unknown -----------------------------------------------------------------------------------------------------------------------------

mmu-mir-6951 (chr15:38420228-38420302 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr15:38420203-38420327 - ----------------------------------------------------------------------------------------------------#########################
AGGACTGGAAGACTGAAACTACCTGTTTCATTGTATTTGTGTGATTAAAGTATTAGAAGTATTGAAATTCTGAGTTTTGCTTTTTTCTTCACAAATACAGGTATGAGATGCAAGATGCTGGAATT
Rat chr7:74161403-74161486 - GGGACTG-------------ACCTGTTTCATTGCTTTTTTATGAT----------------------------GTTTTGTTTATTTCTTCATAAATACAGGTATGAGATGCAAGATGCTGGAATT
Guinea pig Unknown -----------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown GTTGTGGAAAGACTAGGTATACCTATTTCCTTGTCCATTTGTGATGTGATCGCTGTGGGGGCTGAAATTCAACTTTTTGCTTATTTTT------ATGTAGGTATGAGATGCAAGATTCTGGAATT

mmu-mir-6952 (chr15:75895258-75895318 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr15:75895233-75895343 - ####-----------------*-----------**-------*********------------------------------------*-----------#########################
CTCGGTAGGTTGCTGTTGGCT-GGGCCCTGAAT--GGTGGGC---------GGTGAAACAGAGAGCTTAGCATGGGTCTCTGACTCT-GCCTCCCACAGAAGACGCTGGACAGCAGAGCAGTCC
Rat chr7:114095545-114095657 - CTCGGTAGGTTGCTCTTGGCT-CAGCCTTGAAT--GGTGGGTG--------GGTGAAGTAGAGAGACCAGCATGGGTCTCTGACTCTTGCCTCCCACAGAAGACCCTGGACAGCAGAGCAGTCC
Guinea pig scaffold_265570:5727-5845 - CTCGGTAGGTTCCTGGTGACTGTAGCCTT-AGTAGGGTAGATGTGGCCTCCAGTAATGTGAGGA-AT---CAGGCCTCCCTGATACTCGTCTCCCACAGAGGATTCTGGGCAGCAGGGTAGTCC
Rabbit Unknown ----------------------------------------------------------------------------------------------------------------------------

mmu-mir-6953 (chr15:76078621-76078688 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr15:76078596-76078713 + ############-------------------------------*--------------------------------------------*******------#########################
AGGACCCTGGCTGTAAGTGTAGGGAAGGGTAAGGGGCAGGGGC-AGGGATTCAAGTGCCCTCAGGGGACACTGACCCAGCCTCTATGT-------CCCCAGCACCTCAGCATGGGAACTACCAGGA
Rat chr7:114278593-114278710 + AGGACCCTGGCTGTAAGTGTAGGGAAAGGTA-GGGGCAGGGGCAAGGGATTCAAGTGCCTTCAAGGAACATTGACCCAGCCTCTCTGT-------CCCCAGCACCTCAGCATGGGAACTACCAGGA
Guinea pig scaffold_284055:636-757 + AGGATCCTGACTGTGAG--TAGTGATGGTTGATGGGGTGTGGC-AGGGCTCCACTTCCCTTCCAGCATAACTAATTCCATTTCT-TGCCCCTACCCCTTAGCACCTCAGCATGGGAACTACCAGGA
Rabbit Unknown ------------------------------------------------------------------------------------------------------------------------------

mmu-mir-6954 (chr15:76263644-76263703 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr15:76263619-76263728 + --------------------------*****------****---------------------------********************************-*-----------*****--------------########*#################
CTGAGGCTGGGCTCTGCTCTGTGGCT-----ACTCTG----GGGCAGTTCTGGGGGCAGATATGCAAA--------------------------------C-CTCCTGCAGCC-----AGCTCTTCCCCTAGGACCCGGC-CCTGAAGCTCTGCCTCG
Rat chr7:114479986-114480099 + CCGAGGCTGGGCTCTGCTCTGTGGCT-----ACTCTACATACAGTAGTTCTGGGGGTGGGTGTGCAAA--------------------------------C-CTGCTTCAGCC-----AGCTGTTCCCTCAGGACCCGGC-TCTGAAGCTCTGCCTCG
Guinea pig scaffold_251144:76344-76462 + GCACTGCTA----------------------------------GCAGCCCTGGGGACCCGGAGGTAACCACCCGTTAGACTGTGCAGCAGAGTGCCGGCGGCCTCTTGCATCT-----AGGTGTTTCTCCAGGACCCAGCCCCTGAAACTGAGCCTCG
Rabbit scaffold_110767:4217-4324 + GTGCTGGTGGCCACCGCCCCAGGGCTGAACCACCCTG----GGGCAG------------GTGT--------------------------------TGGCGG-CCCCTGCAGCCCCTGTGGCTGTGCCCTCAGGACCCCAC-CCTGAAGCAGTGCCTGG

mmu-mir-6955 (chr15:78722270-78722343 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr15:78722245-78722368 + ---------------------------------------------------------------------------------------------------#########################
CCTCTCTCAGATGTCACCTGCAGGGAAGGGAGGGCCTCAGGACTCAGGAGGTGACCCTAACACTTTGGAGAGTCTCACACCTGTCTCCTTTGCCCACAGTCATCAGATGGCACTGAATCCTCAG
Rat chr7:116857244-116857366 + GCTGTCTCAGATGTAACCTGCAGGGAAGAGAGGGCCTCAGGACTCAGGTGGTGATGCTAACACTTTGGAGAGTCTCAT-TATGTCTCCTTTGCCCACAGTCATCAGATGGCACTGAACCCTCAG
Guinea pig Unknown ----------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown ----------------------------------------------------------------------------------------------------------------------------

mmu-mir-6956 (chr15:78832653-78832714 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr15:78832628-78832739 + ##########-----------------------------------------------------------------------------#########################
CCACAACCAGGTAGGCGGGGCCCTGGCAGGCAGTGAGTGGGTGGGACTGGCCTGGAGTCAGTCACCCTGACCGGCCTATCCTCTCAGGAGCTGCACTCCCACCTGTCCGAGG
Rat chr7:116967042-116967152 + CCACAACCAGGTAGACTGGCCCCCAGCAGGCTCTGAGTAGGCCAAACGGGCCTGGGGTCT-CCGCCCTGACTGCCCTATCCTCTCAGGAGCTGCACTCCCACCTGTCTGAGG
Guinea pig scaffold_293489:1714-1725 + CCACGACCATGT----------------------------------------------------------------------------------------------------
Rabbit scaffold_182542:3844-3945 - CCACAACCAGGTGGGCCTgggcgcggccgg-------ggggcgggg-cggccTGGAGCCC-CCGCCCTGACCACGCCGCCC-CCCAGGAGCTGCACTCCCGGCTGTCGGAGG

mmu-mir-6957 (chr15:80476503-80476566 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr15:80476478-80476591 + ------------------*************************************-------------------------********----------------------------*****------------------#########################
GCCCTACCACCACCACCA-------------------------------------CACAGTTACTGCCAGAAGAGAGACA--------GGATCTAGGGAAAGGATGAATCTGGATC-----TCTTGTTTTCTCTTCCAGGGTCACCGGGGCAACAGCCTGGACA
Rat chr7:118928602-118928720 + GATCTACCACCACCA----------------------------------------CACAGTGAGTGCCAGAAGAGAGACAGGAATGGGAGAGCTAGGGAAAGGATGAGTCTGGATC-----TCCTGTTTTCTCTCCCAGGGTCACCGGGGCAACAGCCTGGACA
Guinea pig scaffold_292818:81312-81467 + GCTATCCCACCCTCATCGTTTGCAAAGCTCTTGCCTACCAGGGTGGTGAGCAAAATCTAGAAGCTGCCACAAGACTGAGG--------AGATGTGTGGGGAGGACGGATCGGCGTCATAGACTCCATTCTCTCTCCCAGGGTCACCGGGGCAACAGTTTGGACA
Rabbit Unknown --------------------------------------------------------------------------------------------------------------------------------------------------------------------

mmu-mir-6958 (chr15:89015895-89015967 -)

mirtron (known)

Species Coordinate Alignment
Mouse chr15:89015870-89015992 - #########################--------*********-------------------------------------------------------------****----#########################
AGGGTGACTGGCTGGGCCTCTACAGGTGGGAGA---------AGAGGCTGCTGTGGGTGCCCCCAAGTCCGCTAGCTCAGCTCCTCAGCTGCCTCTTGCCATC----ACAGGCGGTTTTTCAAGTCCCCCCATTTT
Rat chr7:127487440-127487571 - AGGGCGACTGGCTGGGCCTCTACAGGTGGGAAAACATGGGGCATAGGCTGCTGTGGGTGCCCCCAAACCCGCTAGGTCAGCTCCTCAGCTGCCTCCCACTATC----ACAGGCGGTTTTTCAAGTCCCCCCATTTT
Guinea pig scaffold_294236:113276-113407 - AGGGTGACTGGCGGGGTCTCTATAGGTGGGT----ACGTGGCACAGGCTGCCCCTGGCCACCATTGGCACACTGGGCCAGCCCCTCAGCTGTCGCCACTTGTCACCCACAGGCGGTTTTTCAAGTCACCCCACTTT
Rabbit Unknown ----------------------------------------------------------------------------------------------------------------------------------------

mmu-mir-6959 (chr15:89136089-89136163 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr15:89136064-89136188 - -------------------------------------***********-----------------*********************************-------------------------*---------------------#########################
GGAGAGGCAAAGGGGGGTGGCAGAGGTGCCTGGGAAA-----------CCTGTGTCGGGCTGTGA---------------------------------GTGTTTTCTGGGACCTGATACTCAC-TGCACCGACCTGCTCTCCCAGGACAAGGAGCTCCGTGCTGTCTTTC
Rat chr7:127601515-127601672 - GGAGAGGCAAAGAGGGT-GGCAGAGGTGCCTGGGAAG-----------CCTGTGTCTGGCTGTGACGGGGAGTGGAGAGGAGTGCCCAGGGCCCTTGGATGCTTCCTGGGACCTGACACTCACCCACTCTGACCTGCTCTCCCAGGACAAGGAGCTCCGCGCTGTCTTTC
Guinea pig scaffold_160297:3034-3160 - GGGGTGGCAGGAGGGGTGGAAAGGGATGCTGAG-GAGCCCACTCCCGACCCGGG------------GTGGGCTAGGCAGTAGT-------------------------GGGCCTGGCGCTCAC-TATGCTGAC-TGCT---CCAGGACAAGGAGCTACGTGCTGTCTTCC
Rabbit scaffold_186138:3217-3249 - GAGGAGGCGGACGGGCAGGGCTGGGCTGGTGGA-----------------------------------------------------------------------------------------------------------------------------------------

mmu-mir-6960 (chr15:98911236-98911296 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr15:98911211-98911321 + --------------------------------------------------------*----*********************--------------------------#########################
GTGATTTCTATCAACAACCCTTGGGCTGGGCAGGATGAGAAGAGTTTGGCTGGAAG-CCCT---------------------GCTCAGCCAACCACCTCTCTCCTCAGAGCACATATTCATCCATGAAACGCT
Rat chr7:137857719-137857834 + GTGATTTGTGTCAACAGCCCTTGGGCTGGGCAGGATAAGAAGTGTTTGGCTGGAAAGCCATGTT-----------------CACTCAGCCAACCACATCTCTCCTCAGACCACATATTCATCCATGAAACGCT
Guinea pig scaffold_177503:6552-6684 + CTGGTTTGTATTGAAAACTTGGGGGGTGAGCAGGAACAGAACAATCTGGCCAGAGAACCCTGTTGGCCTGGGTGTTTTTCCTGCTCAGCCATCCGCCTACCTCCCcagacttcattttcattattGCAGCGTC
Rabbit Unknown -------------------------------------------------------------------------------------------------------------------------------------

mmu-mir-6961 (chr15:100479594-100479660 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr15:100479569-100479685 - ------***-----------------------------------------***------------------------------------****---------##################-------
TGGGCC---AGAGGAGGTTTTGATTGGGAAAGCTGACTGGGAAGGAAATG---GCCAGGGCTCTCTAACTAACCTGTCCTCTTTCTTCC----TGGCTCTAGTTGAACCACAATCTCTACGAAGTGA
Rat chr7:139415423-139415537 - TGGGGT---GGAGGAGGTTTTGACTGGGAAAGCTGCCTGAGAAGGGAATG---GCCAAGGTTCCC--TTTAGCCTCTCCTTTCTCTTCC----TGGCTCTAGCTGAACCACAGTCTCTATGAAGTGA
Guinea pig scaffold_284705:62374-62485 + TGAGCC---A------TTTGTGTTTTGGGAAGCTGTCTTAGGAGAGGATC---ATCTTGGGTTCCCATCTtGTgT--gggTT-TgTTTgTTTgTGGgTgTAGCTGAACCATAGTCTCTACGAGGTGA
Rabbit scaffold_212776:9640-9760 - TGGGAGGCCCGAGGAGGTTTTC-CTGG-GGAACTGTCTGGAGGAGGGGTCGGGGACGGGG--TCCCATCTGA-CTGTCCTTT-TCTTCCTGGCTGGCTCCAGCTGAACCACCAGCTGTACGAGGTGA

mmu-mir-6962 (chr15:101024300-101024362 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr15:101024275-101024387 + -****-------**---------**********-----------------------------------*----------------------************--------------#########################
G----GCATGTG--AAGCATGCC----------TCTGACTCCGGAAAAGGACCTGGTGGGAGATCTCA-CATCACTGTTGATATCTGCCCT------------TCCCTGTCCTATAGCTCTGCTGTGTGCGTGCACCAGCTG
Rat chr7:139938904-139939026 + G----GGATGTG--AAGCATCCCATGGGGTCATTCCGCCTCTGGAAAAGGACCTGGAGGGAGACATCG-CACCACAGTTGATATCTGCCCC------------TCTGTGTCCTTTAGCTCTGCTGTGTGCATGCACCAGCTG
Guinea pig Unknown ----------------------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_203167:39643-39763 - TTCTCACATGTGCTAGG-------------------GACT-TGCAAAAGGAGCTGGAC-GAGACCTCACCGTCACTGTTGCTGTGCCCCCTATCCCCCCCACCCCCGTCTCCCGCAGCCTTGCTGTGTGCGTGCACCAGCTG

mmu-mir-6963 (chr15:103180886-103180956 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr15:103180861-103180981 - ------------------------------****************------------------------------------------------------------------#########################
TGGGGCTGAGTTGAAGGTGAAAGAAGGGAA----------------GGTGGGATGGATGGCAGAACCTGGAGATTCTTGTCAAACTGCTTGCCTCTTGCCTCCATCCCACAGCAAGAACCTGAACAACTCACAAAGC
Rat chr7:142261042-142261162 - TGGGACTGAGTTGTGAGTGAAAGAAGGGAA----------------GGCGGGGCAGGCAGCAGAGCCTGGGGGTTCCCTTCAAACTGCTTCACTCTTACCTCCGTCCCACAGCAAGAACCTGAACAACTCACAAAGC
Guinea pig scaffold_277435:101551-101657 - TGGGACCAAGACG-----GGCAGAAGTGGAGTGGGGTGCCGGAGAGGCTATGGCAGGCAGCA-------------------------CCTCAGTCTGGCTTCCATCCCACAGCAAGAATCTCAACAACTCACAGAGC
Rabbit Unknown -----------------------------------------------------------------------------------------------------------------------------------------

mmu-mir-6964 (chr16:98098840-98098898 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr16:98098815-98098923 - -------------------------------------------------*******-----------------------------------#########################
CACTGTGTAGTGAACCTAACGGAACCCCCCTTGGGGTGTGAGACTGGAA-------ACATCACCATTGTTCTTTCTTGTCTTCCACTCTAGGTCTGTTGGGGATAGCAACCATTCA
Rat chr11:37893193-37893298 - TACTGTGTAGTGAACCTAACAGAACATCCCTC-GGGTGTGA--CCGGAA-------ACATCACCATCGATCCTTCTTGTCTTCCACTCTAGGTCTGATGGGGATAGCAACCGTTCA
Guinea pig scaffold_248744:7970-8077 + GCTCGTGGAGTCCCCTTCTG------CCCCCCAGGGTGTGC--CCTGGAGCCCCTGACATCATCAGCGACACCTGGTCTTCTCATCCTTAGGGTCCCTGGCGGTAGCGGTTGTTCC
Rabbit scaffold_143329:1366-1408 + TCA-------------------------------------------------------------------------CCCCTGTCTCTGCAGGGTTGCTGGCGGTGGCCACGGTCCC

mmu-mir-6965 (chr17:24377829-24377892 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr17:24377804-24377917 - --**-------------------------**--------------*****************------------------------------------------------#########################
TG--TACGACTGCTTGAGGGTCTAGGAGC--GGGAGAGGGAGGCT-----------------ATTGGGCAGGAGATGAGGAAGAACCTTCTGTGCTCGGTCTCGCTCCAGGACGAAGAGAAAAGGAAGCAGGCGC
Rat chr10:13490621-13490734 - TGCCTCTGACTGCCTAGAGGTATAGAAAT--GGAAGAGGGTGGCT-----------------GTTGGGCAGAAGATGAGAAAG--CCACCTGTGCTTGGTCTCACTCCAGGACGAAGAGAAAAGGAAGCAGGCTC
Guinea pig scaffold_287588:34446-34578 - AGAGTTTGATTGCTTAGGAATGTGGGAGGAGGGATGAAGGAGACTGGTAGAATGAATTAAACGTTGAGACAAAGATAAGAAAA--CCAGCTGTGTTTCACCTTGCTCTAGGtTGttGtGtttttGtGGgtGGCCC
Rabbit Unknown ---------------------------------------------------------------------------------------------------------------------------------------

mmu-mir-6966 (chr17:25917753-25917824 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr17:25917728-25917849 + --------------------*****--------------*------------------------------------***---------------------------#########################
CTGTCCCACCACCAGCTGGA-----GTAAGTGTCCCTCG-GGGATGTGGACAGCACAGCCATCTCAGATCAATGAG---AGCATGTGCTGTGTGCTTCCTCTGCAGGAGAAGTCTTCAGGCTGCTGGAGGA
Rat chr10:15048230-15048349 + CCATCCCACCACAAGCTAGA-----GTAAGCGTCCCTCTGCAGATGCAGACAGTGCAGCCATTTCAGATCA-TGAG---AGCATGTGTTGTG--GTTCCTCTGTAGGAGAAGTCTTCAGACTGCTGGAGGA
Guinea pig Unknown T---TCCACCACCAGCTGGGTGGATGCCAGAGACCCTCC-TGGGGCCAGACTGCACAGATACCTGGAAGCC-CAGGCTTAGCCCATACTGTG----TCCATTGCAGGGGAAGTCTTCAGGCTGCTGGAAGA
Rabbit Unknown -----------------------------------------------------------------------------------------------------------------------------------

mmu-mir-6967 (chr17:27057907-27057964 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr17:27057882-27057989 + ------------------**--------------------------------*----*-----------------------------#########################************
ATATGTTTTGAATGCAGA--GAGTAAGAAAGGCAGGGAGGGATAAAGACCAG-TCAC-TATGGAAACTCATCTTTATCTCTCCCCAGAAACGGACACGAGTCATGGGTGCAG------------
Rat Unknown ----------------------------------------------------------------------------------------------------------------------------
Guinea pig scaffold_162950:4358-4398 + CCG-----------------------------------------------------------------------------------GGTGCGGGCGCTGGGCCTGGGCGCTGCCGGAGCAGAGG
Rabbit Unknown ATGTGTGTACACTCCTGCATGAGTGTGT-----------------------GTGCGCGTATGG-GTCTCATCCTGATCTTTC-CCAGAAACGGATACGAGGGCTGGGTCCGT------------

mmu-mir-6968 (chr17:27072417-27072484 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr17:27072392-27072509 + --------------------***---------------------------***---****----------------------------------*---------#########################
GCAGAGCCCGGGAAAATGGG---TGAACAGGGGGCGAGGGGGCCCTGTGG---TTT----CAAGAAGGCTGTCTGAGGGCCACAAGCGCTGTCT-CCCCTCCAGGTGGAACCTGAAAATGCTGCAGTGC
Rat chr20:5172413-5172529 + GTAGAGCCCAGGACAGAGGGGAGCGAAGAGGGTGAGGGGGGGCCCTGTGG---TTT----GAAGAAGG----CTGAGGGCCAT-GGCGCTGTCTTCCCCTTGAGGTGGAACCTGAAAATGCTGCAATGC
Guinea pig Unknown ---------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_166232:3178-3294 + GGAGGACGGGGGATGGGAGG-------TAGGTGCCGAGCAGGGTTTGGGGCAGTTAGGGGGAAGA-GGGTGTCTGAGG-CGACTCGTCCCGTTT-C--CCTCAGGTGGAACCTGAAAATGCTGCAGTGC

mmu-mir-6969 (chr17:28695386-28695446 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr17:28695361-28695471 - -------------------------------------*-----------------------**************--------------------------#########################
CACCCTGGGAAGTACCAGACAGCCAGTTCCCAGCAGA-GTAGGGAGCAAAAGATAACCAAG--------------TGACTCTGTTGTTCCCATCTCTGCAGACCCTCTATGGGATCTACTACCGGT
Rat chr20:6802624-6802748 - CACCCTGGGAAGTACCAGGCAGCCAGTTCCCAGCCGA-GTAGGGAGCAAAAGATAACCAAGTCTCCCACTATTGGTGACTCTGTTGTCCCTGTCTCTACAGACCCTCTATGGGATCTACTACAGGT
Guinea pig scaffold_111345:39-87 - CCCTCTGGAAAGCCATCTGCTACTAGTTCCTGGCTGGGgtGGGGtgtGt-----------------------------------------------------------------------------
Rabbit Unknown ------------------------------------------------------------------------------------------------------------------------------

mmu-mir-6970 (chr17:34982046-34982112 -)

mirtron (novel)

Species Coordinate Alignment
Mouse chr17:34982021-34982137 - ##############################################***###*****###########*******####################*########*#############################
CCCGAGGGGCCTTCCACACCCAGGGGTAAGTTCAGGGCTGGGAGCA---GAG-----ACTGGGCCTGT-------GCGAGGTCTCACGCCACCCA-CCCTGTGC-TCAGGTACTATGCTGCAGTGGAGGCCAAG
Rat chr20:4087652-4087773 + CCCGAGGGGCCTTCCACACCAAGGGGTAAGC--ACGGCTGGGAGTG---CTG-----GCTGGGCCTGTGCGGGCTGCGGGGTCTCACGCCAGCCT-GCCTATGC-TCAGGTACTACGCTGCCGTGGAGGCCAAG
Guinea pig scaffold_279385:44713-44828 - CGCGTGGGGCCTTCCACACCAAGGGGTAAGCCCGCGGCTGTGGGGT---CCA-----GCTGCACC---------GGCCAGGCCTGATGGCTCCCTGCCCTGCGC-CTAGGTACTACGCTGCCGTGGAGGCGAAG
Rabbit scaffold_195381:36683-36807 + CCCGAGGAGCCTTCCACACAAAGGGGTGAGCCCAGAGGTGG--GGCACAGAGTCAGGGCTGGGCCCCC------GACTGGGTGTGATGGCCGCCT-CCCTGTGCCCCAGGTACTATGCGGCTGTGGAGGCCAAG

mmu-mir-6971 (chr17:34978754-34978816 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr17:34978729-34978841 - -----------------------*-------------***----*-----*--------------------**-----------------------#########################
TGGCCAGGTGGGCATGCGGAGGC-AGTGGGGTGGGGG---AGGG-TGTAG-AGGCTGGGCTGGCAGACTCA--TCACAGCCTCTGCTTCTTCTCAGGCCCATGAGCAGGCTCTGGCTGACC
Rat chr20:4090967-4091076 + CA---GGGTAGGCATGCAAAGGCCAGTGGG-TCGGGG---AGGA-TGTAG-AGGCTGGGCTGGCAGACTTG--TCACAACCTCTACTTCTACTCAGGCCCATGAGCAGGCTCTGGCTGACC
Guinea pig scaffold_284636:3270-3305 + -------------------------------------------------------------------------------------CCTCCGCTCAGGCCCACGAGCAGGCTCTGGCTGAAC
Rabbit Unknown AG---AGGTGGGCGACTGGAGGCCAGCTGGGCG-GAGGTGAGGGCTATAGCAGGTTGGGCCTGGAGACTTGTTTCACAGCCTCCCCTTCTGCCCAGGCCCATGAGCAGACTCTGGCTGAAC

mmu-mir-6972 (chr17:34994514-34994577 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr17:34994489-34994602 - ------------------------------------*----------------------------------------------*-------#########################
CTGGGGCTCAGAGATGCTATGAAAGGTTGGGCTGGA-GGCACAGGGCAGAACAGGTTGTCTGTGGCTCCTTACTGTACCTGTC-TCCATAGGCCCATCTGTCTCCCCTGCACGGAG
Rat chr20:4076565-4076676 + CTGGGTCCCAGAGGAACTAGGGAAGGTG-GGCTGGAG--CATAGGACACAACAGGCTGTCTGTGGTCCCTCACTCTACCTGTC-TCCATAGGCCCATCTGTCTCCCCTGCACAGAG
Guinea pig scaffold_263913:294-382 - CGG-GTCCCGAGTG---------------GGCTGGG-GGGACTG-------GAGCCAGGA--TGGGCCGTGACTGTCCCCATC-CCATCAGGCCCGTGTGCCTCCCCTGCACCCTC
Rabbit scaffold_195381:24766-24864 + TGGAGTCC---------TGCGAGAGGCG-GGCTGGGACGAGCA-------GCTGCCTGTCTGGACCTCCTGACTTTGTCCCTCATGAACAGGCCCATCTGCCTGCCCTGCACGGAG

mmu-mir-6973a (chr17:35331917-35331994 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr17:35331892-35332019 + ---------------------------------------------------------------------------------------------**----------#############***############
ACAGCAGGCCCAGGCCTTGGGGCTGGGCTCTACGGTGGGAGGGGTGGAGTTGCCATTAGCCAAATCTGACCTCTGGGCACTCTAACCCTACCT--ACCCATCCAGGTTGAGAAGATCA---TTGGCTCAGGAG
Rat chr20:3667773-3667899 - ACTGCAGGCTCCAGCCTTAGGGCTGGGCTCTACTGTGGGAGGGGTGGAGTTGCCAATAGCCGAATCTGACCTCTGGGCACTATAACCCT------ACCCATCCAGGTTGAGAAGATCGTTATTGGCTCGGGAG
Guinea pig scaffold_261235:101512-101633 - ACCGCCG------AGCCCGGGGCTTAGGTCCGCGCTGGGAGGGGCGGGAGTGGCATCAGCTGAAGCTGAGCTCTGGGAGCAGTGACCCTCTCTCCT-CCCAGCAGGTAACGGAGACCT---CTGG-TCAGGAG
Rabbit scaffold_200762:30951-31071 + ATGGGAAACCCCAGGCCTGGAGCTGGGGTCTG---TCGCAAGGGTGGGGTTGGCATCAGCTGAATCTGAACACTGGGCACTGTGACCCC------ACCCAACCAGGTACCAGAGACGG---CTGATCCTGGGG

mmu-mir-6973b (chr2:130866062-130866134 -)

mirtron (novel)

Species Coordinate Alignment
Mouse chr2:130866037-130866159 - #########################-------------------------------------------------------------------------###***********######################
GACTGCTGGGTGCTGTTTCCCGCGGGTAGGTATGGGGAGAGGACAGGGAGTTGACAGTTTCCGAATCCTTCCCATCTGTGCTCTCTTACCCTTCCTAGGCA-----------AGGCACGAGTGGCCTGAGAAGA
Rat chr3:118712424-118712552 - GAATGCTGGGTGCTGTTTCCTGCGGGTAGGTATGGGGAGAGGATGTGGAGTTGGCAGTTTCT-CATCGTTCCCTTCTGTAT----TTACCCTTCTCAGGCAGGCCAAGGTGGAGGCCTGAGTGGCCTGAGAAGA
Guinea pig Unknown --------------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_203294:16571-16668 - GGACGCCAAGCCCAGCCTCATGCAGGTAG-------GAAGGGCTGGGGAGCTGGCAGCTTC------CTTACC-----------------------AGCTGGGCCTCCATGGAGGCAGGAAGGCCTGGGAGGGA

mmu-mir-6974 (chr17:35341420-35341502 -)

mirtron (novel)

Species Coordinate Alignment
Mouse chr17:35341395-35341527 - ############***#############----------------*------**-------------------------------------*----------------------*--##################*******#######
GCTGGCCCTGCC---TCTAGGGGCCCAGGTGAGGCAGCAAGAGA-TTGGGG--GTGCTGGGGTGGCCTAGCTAACTCAGAGTCCTAGAGT-CCTCTCCACTCTCTTCTGTCCC-AGGGACTCTCTGGTGTCCGC-------TTCTCCG
Rat chr20:3658427-3658558 + GCTGGCCCTGCC---TCTAGGGGCCCAGGTGAGGCAGCAAGAGAGATGGGG--GTGCTGGGGCGGCCTGGCCAACTCAGAGTCCTAGAAC-CCTCTCAACTCT--TCTCTCCT-AGGGACTCTCTGGTGTTCGC-------TTCTCAG
Guinea pig scaffold_261235:93722-93783 + CCTG----------------------------------------------------------------------------------GAGA-CTTCTCAATTCTCTC--CGCCCCA-GGACTACCCGGTGTCAGCCCTAGCACCATCAG
Rabbit scaffold_200762:40939-41080 - GCTGGCCCCGCCGCCGCCTGGGGCCCAGGTGAGGCCGCAGGAGA-ATGGGGAGCTGCCGGGGTG---CGCCCAACCTTGAGCCTCGCAGCTCCCCTCAACTCTGTTCTCCCCT-AGGGGCTCCCTGGGGC-TGAGTTCCCGCCCTCAG

mmu-mir-6975 (chr17:35381020-35381080 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr17:35380995-35381105 + --------------------------------------------------------------******************************----------------*--------#########################
AAAGGTGACAAGGTGACATATGATGAGTCGGCTGGGGAGAAAGGGGTTTGGCACGGTGCAAA------------------------------AATGTCTCTCCTTTCT-CCTCCTAGTCCAGCATGAGTGCATCCCGCAGGC
Rat chr20:3621172-3621276 - A----------GGTAAAATGTGACACATTGGCTGGGAAGGAGGGGACTTGGCATGGTGT-------------------------AAAATAAAAATCTCTCTCCTTTCC-CC-TCTAGTCCAGCATGAATGCATCCCCCAGGC
Guinea pig scaffold_264807:49768-49903 + AAAGTTTGCAAGA-GGCACTTGGAGAACTGAGTGGGAAAACACGGCT-----GTGGTACAAAAGGTGGTGAAGTTGTTTGGAGACAagtcttgatttctttcttttctttcttgtagtCCAGCATGAGTGCATCCCTCAGGC
Rabbit Unknown ----------------------------------------------------------------------------------------------------------------------------------------------

mmu-mir-6976 (chr17:46690776-46690838 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr17:46690751-46690863 - ------------*************-------------*********************---------------------------------------------------------------#########################
CACCCTAGGAGT-------------CACCATATAATTT---------------------TTCCCCAGGGAAGTTGAGAGGAAAATTGTCGCTGACCTGCCCATCTCCCTCCCAACTCCCCAGGCCTATGAGCTGTCCACGCTGACAG
Rat chr9:9790658-9790780 + CATCCTAGGAGTCAGCACTAGAGATCACCGTACAGTT----------------------TTCCCCAGGGAAGTAGAGAGGAAAAGCGTCGCTGACTTGCCCATCTCCT--CCAACTCCCCAGGCTTATGAGCTGTCCACGCTGACAG
Guinea pig scaffold_263902:16705-16816 - CATTATGGGAGTG-GGGCTGGAGATCACCATGTAGGTGTACCTCTTCCTACTTTCCTACTTCCTGAGGAAGACAGAGGTGGAAAGTTGTACTGACCTGCCCATCTCCTCCCCA----------------------------------
Rabbit Unknown ---------------------------------------------------------------------------------------------------------------------------------------------------

mmu-mir-6977 (chr17:56558269-56558332 -)

3p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr17:56558244-56558357 - #########################----------------------------------*******--------------------***--------------*--*****----**-----##########
GACGCGACTGGAGGAGAAATCACGGGTGAGGCGCTGTGGGCACGGCTTGGCCCCGAGGC-------TTCCAAGGCGTTGCCTGACC---CTGACCTCATCTCC-CT-----GTCT--GGCAGATCAAATGTG
Rat Unknown GACACGGCTGGAGGAGAAATCACGGGTGAGGC--TATGGGCAAGGCTTGGCCCTGAGGC-------TTCCAAGGTGCTGCCTGACCTTCCTGAGCTCATGTCC-CTCT--CATCC--CACAGGTCAAATGTG
Guinea pig scaffold_236054:12860-12969 - TATGCGAGTCCCGGAGAAGCCAGGGGTGAGGCTGGGAC-------CTCAGCCGTCAGGCCCCAGCCA-----------GCCTGGCCGT----GGCTGATGCCCTCTCTTGTAGCCGGTGCAGATCAAGGATG
Rabbit Unknown ------------------------------------------------------------------------------------------------------------------------------------

mmu-mir-6978 (chr17:57356595-57356651 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr17:57356570-57356676 - ------******************------------------------*---------------------------------*************************************************-----**--------------#########################
GAGAGG------------------GCAAGGTGGGGTAGGGTACAAAGG-AAGGGGTGAGAGAGAAGCTGGTGCCATCCACGG-------------------------------------------------CTTCA--CTCTCACCCTGCAGGGGGAGTGCAGAAGGTGGATGTGCC
Rat chrUn:64526941-64527046 - AAGAGG------------------GCAAGGTGGGGTGG-GTACCAGGG-AAGGGCT-GCAG-GCAGCTGGTGCCATCCAAGT-------------------------------------------------CTTCACTCTCTCACCCTTCAGGGGGAGTGCAGAGGGAGGATGTACC
Guinea pig Unknown ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_181597:14591-14761 - GAGAGGGGGTGAGGCCGGCCCTGGGCATGGTGGGGCGA-G-A-GGAGGGTGGGGCA-GGAGGAGAGCAGGTGGCATGCACGTCTCTCTCCTTGTGGGGGAAGCCTGGGCATGGTGGCCAGCCACCTTCAGGCCTCT--CACTTGCCCGGTAGGGGGCGTCCAGAAAGAGGAAATCCC

mmu-mir-6979 (chr18:38014259-38014314 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr18:38014234-38014339 - -------------------*********---------------------****-------------------------*****----------------#########################
GGAGGAGCGTAAGCAGGGC---------GGCTGGGGGGAGGCGCAGAGA----CTGAGCTGCTCAGTGCGCGCTTGTG-----TCTGTCTGGCTCCCAGTCTCTGCTGAGAACCTGCAGAAGAG
Rat chr18:30767131-30767234 - GGAGCAACCTAAGCATGGCTGAGAGAG-----------AGGCTAAGAAAGCATTTGAGCTGCTCAGCGAGCGCT---------TCTGTTCGCCTCCCAGTTTCTGCTGAGAACTTGCAGAAGAA
Guinea pig scaffold_285325:9373-9487 + AGAAT-ATATATCCAAAATGAAGAGTGAAGCTGGGGGG----TCTG---ATGCCAGAGTTGCT-ATTACGCTCTTGTGCTATTTTTGTGTTTCCTGTAGTTTCTGCTGAAAACTTGCAAAAGAA
Rabbit Unknown AGAGA-GTGTGTTCAGATCGCAGCGAGGGGAGAGGGGA----GCGG---GGACAGGAAGGACTGAGTAAA-G-----------CTCGTGTGTCCTGCAGTTTCTGCTGAGAACTTGCAAAAGAA

mmu-mir-698 (chr4:124421057-124421117 +)

5p_tailed_mirtron (reclassify)

Species Coordinate Alignment
Mouse chr4:124421032-124421142 + #############################****###******###################################################**############################
TGCCCTCACTGTAAGGGAGGGTGGTGGCT----ATG------TGGGTGGGACAGGGATGTTCAGTTGCTAAAGACATTCTCGTTTCCTTCCCT--CAGTGTCCCCAGATGGTGAACTCTACAT
Rat chr5:144074768-144074887 + TGCCCTTACTATA-GGGAGGGTGGTGGCAATGGAGGACGATGTGGGTGGGACAGGACTGTTTAGTTGCTAAAGACATTCTCATTTCCCTCCTT--CAGTGTCCCCAGACGGTGAACTCTACAT
Guinea pig scaffold_258169:775-882 - TGCCCT----GT----GAGGGCGGTGGGAG-GAAGGAGGATGC---T-GAGCCGGGGTGCTCAGTTA-TAAAGATGTTCT-GCCTCCTTCCCCAACAGTGTCCTCAGACGACGAAGTCTACAT
Rabbit Unknown ---------------------------------------------------------------------------------------------------------------------------

mmu-mir-6980 (chr18:38150541-38150599 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr18:38150516-38150624 - ###---------------------------------------------------------------------------------#########################
AGGGTGAGGGTCAGAGCCCACTGGGTTAGGGTGGGGGGGGAGGCTAGGTTAGCATCCACCCAGCTGACTTGCCTTCCACCCCAGCTCAGCGTGACCTATGGTGCTCCAC
Rat chr18:30911086-30911194 - AGGGTGAGGGTCAGGGCCCACTGGGTTAGGGTAAGAGGGGAGGTTAGGTTAGCATGCACTCGGCTGACCTCTCCTCCACACCAGCTCAGCGTGACATATGGTGCTCTAC
Guinea pig Unknown -------------------------------------------------------------------------------------------------------------
Rabbit Unknown -------------------------------------------------------------------------------------------------------------

mmu-mir-6981 (chr18:38134157-38134271 -)

mirtron (novel)

Species Coordinate Alignment
Mouse chr18:38134132-38134296 - #####################################################################################################################################################################
GACCACAAGCATCCTTAAAGCCCAGGTGAGGAGAAGGAAGAGGCTGAAGGCTGGGCTTCTGGTGCTTCTGGGGTTCAGCCACACACCCACCCCCAGTGCCACCCAGGCCGACCAGTGCCAACAGCCTACTGTCTCCTCAGCATGATGACCAACAGTCCGTGGTTT
Rat chr18:30895545-30895704 - GACCACAAGCATCCTTAAAGCCCAGGTGAGGAGAAGGAAGAGGCTGAAGGCTGGGCTTCTGGTGCCTCTGGGGTCCAGCCACAG-----CCCCCAGTGCCACCCAGGTCCACTAGTGCCAACAGCTCACTATCTCCCCAGCATGATGACCAGCAGTCAGTGGTTT
Guinea pig scaffold_143484:860-1018 - GACTACCAGCATCCTTAAAGCTCAGGTGAGG-GAAGGACAAGGCTGAGGCTTGGGTCTTGGATCTCTCTGGGGCCCAGCTGTAC-----CCCTCACTACCTCCCAAGCCCACTGGTGCCAACCTCTCAATCTCTTACTAGCATGATGACCACCAGCCAGTGGTTT
Rabbit scaffold_211963:4071-4215 - GGCCACCAGCATCCTTAAAGCGCAGGTGAGGGAAAGGAAAAGACTGGGGGCTGGGTCTGTGGTCTCCCTGGGACCCGTTTATAC-----CCCTCCGTGCCT---------------TCCAACTGCTCGTCCTCTCGCCAGCACGATGACCAGCAGCCAGTGGTCT

mmu-mir-6982 (chr18:61117731-61117794 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr18:61117706-61117819 + -----------------------------------------------------------------------------------------#########################
CTGCCTGCCCCCCTGCCAGTCAGGGGCTGGAGGATCGCAGGGGTGGCCTGGGGCAGGCTAGGCAAACCTGGCCCCTCTGCCCCTTCCAGTTCCCATCACCAGAATGGGACACCG
Rat chr18:56919238-56919351 + CTGCCTGCTCCCCTGCCAGTCAGGGGATGGAGAATCGCAGGGGTGGCCTGGGGCAGGCTAGGCAAAACTGGCCCCTCTGCCCCTTCCAGTTCCCATCACCAGAATGGGACACCG
Guinea pig scaffold_180343:2999-3112 - CTGCCTGCTCCCCTGCCAGTCAGGGGATGGGGGATCGCAGGGGTGGCCTGGGGCAGTCTGGGCAAATCTGGCCCCTCTGCCCCTTCCAGTTCCCATCACCGGAATGGGACACTG
Rabbit scaffold_201183:3873-3986 - CTGCCTGCTCCCCTGCCAGTCAGGGGCTGGGGGATCGCAGGGGTGGCCTGGGGCAGGCTAGGCAAACCTGGCCCCTCTGCCCCTTCCAGTTCCCCTCACCAGAATGGGACACTG

mmu-mir-6983 (chr18:61277122-61277185 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr18:61277097-61277210 + ----------------------------------------------------------------*-------------------------#########################
GAGTCTAAGTCTGGGTTGCGTACCCATGACTTGGAAGGGCATACTGATTCGGGAGACCCTAAAG-CCTGAATCAAAGTCTGTTGTTCCAGGTGTGATGAAGCCCAGGCTTTGCAG
Rat chr18:57093162-57093272 + GAGCCTC----TGGGTGGGGCACCCATGACTGGGAGGGACATGTTGATATGGAAGACTCTGAAGCCCTGAATCAAAGTCTGTTGTTCCAGGTGTGATGAGGCCCAGGCCTCGCAG
Guinea pig Unknown GGGCTGA----GGGGCTGGACACCCATAAGTGGGAGGGG-ATCCCAGGCTGGG-GATTCGGAAACCCTGAGTCATGTTCTGCTCTTCCAGATGTGATAAGGCCCAGGTGCTACGT
Rabbit Unknown -------------------------------------------------------------------------------------------------------------------

mmu-mir-6984 (chr19:3288920-3288983 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr19:3288895-3289008 + -----------------------------------------------------------------------------------------#########################
TCTGGGGAGCTTCCGCAAGTTGTGCGTGAAACTGAAAGGCAATGAAGGAGGAGCACTGTCACAGTGTACTTTCTTTCCTGTCTTTCTAGAAAGGAGCTTGTACGAGTTGAAGCC
Rat chr1:205821623-205821736 + TTTGTAGAGCTTCCAAAGTTTGTGGGTGAAGCTGGAAGGCAATCAAGGAGGTGCACTGTCATGGTGTTGTTTCTCTTCTGTCTTTCTAGAAAGGATCTCGTACGAGTTGAAGCC
Guinea pig Unknown ------------------------------------------------------------------------------------------------------------------
Rabbit Unknown ------------------------------------------------------------------------------------------------------------------

mmu-mir-6985 (chr19:4263818-4263878 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr19:4263793-4263903 - --------------------------------------------------------------------------------------#########################
AAGGGGAGGGGACAAGGGCGGTGTTGTGTATACTGAGGGGTGGCTGCTATGTCACTCAAAGCTGACTCACAGCCACCTCCTCACAGCCGGCAGAGCCACGTCTGGGAGCAG
Rat chr1:206850089-206850198 - G-GGGGAGGGGACAAGGGAGGGGTTGTGTATACTGAAGGTTGGCTGCTGTGTCACTCAAAGCTGACTCAGAGCCACCTCCTCACAGCCGGCAGAGCCACGTCTGGGAGCAG
Guinea pig Unknown ---------------------------------------------------------------------------------------------------------------
Rabbit scaffold_193969:3824-3930 - G--GAGTGGGGTCGTGGGGAGTGCTTTGTGTGCTG--GGGTGGCTGCTGGGTCCCTCAGAGCTGACTCAGAGCCCCCTCCTCGCAGCCGGCAGAGCCACATCTGGGAGCAG

mmu-mir-6986 (chr19:4623898-4623955 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr19:4623873-4623980 - -----------------------------------***--------------------------***----------------------#########################
GCATGAGGGCTAAAAATGGGGCTTTGGGTGAGGGG---AGCTAGGTAGAAAGCCAGAGGCATAT---GTGGTTTTCACCTTCCTCCCAGCCCATTTTCACCACATTATTGAGCA
Rat chr1:207215014-207215127 - GCATGAAGGCTAAAAATGGGGCTTTGGGTGAGGGGGACAGCTAGGTAGAAAGCCAGAGGAATATGATGTGGTTTTCACCTTCCTCCCAGCCCATTTTCACCACATTATTGAGCA
Guinea pig scaffold_272116:33937-34041 - ---------CTGAGAATGAGGCTTTGGATGAAAGATGAGCCTAGAGTGAAGGCCAGAGGCATATGGCATGGTTCTCACCTTCTTTCTAGCCCATTTCCACCACATTATTGAGCA
Rabbit scaffold_109818:4351-4376 + ----------------------------------------------------------------------------------------GCCCATTTCCACCACATCATTGAGCA

mmu-mir-6987 (chr19:5679004-5679076 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr19:5678979-5679101 - ---------***--------------------------------------------********----------------------------------------*-----#########################
ATGGGAGGT---CTTGTGGGAATGGAGGAACAGTGGGACAGGGTGACAGGGTGAGA--------CCCATAGATCAGAGCTGGGCTTCACCCATTTCTCCCTGCT-TCCAGCTGCCACCAGCCCACTCACTGCGGT
Rat chr1:208302299-208302429 - ATAGGAAGT---CTCCTGGGAATTGAGGCGCAGTAGAACAGGGTGAGACAGTGAGAGGTTGGTATCTGGAGGTCAGAGCTGGACTTTACCCATTTCTTCCTGCT-TACAGCTGCCACCAGCCCGCTCACTGCGGT
Guinea pig scaffold_289525:44883-44997 + CCAGGAAGTCATCTTCTGGAAGATGGGGGGCAGG---------------AGTGAGGGAT-----GCCGCAGGTGAGAGCTGGCCTTTACCTACTCCTCCCTGCCACACAGCTGCCACCAGCCCACTTACTGCAGT
Rabbit Unknown ---------------------------------------------------------------------------------------------------------------------------------------

mmu-mir-6988 (chr19:6051335-6051392 +)

5p_tailed_mirtron (known)

Species Coordinate Alignment
Mouse chr19:6051310-6051417 + #----------------------------------------------------------------------------------#########################
GGTAAGTTGGCCACTCTCTGGGATATCTGGGGTGGAGAGCTGAGGCCCAGGTAGCTCAGCCTGACCTCTGTATCTCCTGCCAGCCTTCCCCCCAATGCCTGTGCCCCC
Rat chr1:208688771-208688878 + GGTAAGTTGGCCGCTCTGTGGGATCTTCAGGTTAAAGAGGTGAGGCCCAGGTAGCTCAGACTGACCTCTGTGTCTCCTGCCAGCCTTCCCCCCGATGCCTGTGCCTCC
Guinea pig Unknown ------------------------------------------------------------------------------------------------------------
Rabbit Unknown ------------------------------------------------------------------------------------------------------------

mmu-mir-6989 (chr19:6346480-6346544 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr19:6346455-6346569 + #############-----------------***-------*****------------*--------------------***------*---------------#########################
CACAATGGAGAAGGTGAGGCTTGTTGGCTG---TTGGGGA-----CAGAGGCACAGG-ATGCTGGCTGCTGACCACCT---GTCCAC-TGTCTCTGGTCCCAGCTCATCTCCCAGCGCTGCTCCTGGC
Rat chr1:209126449-209126564 + TACGCTGGAGAAGGTGAGACTTAGTGGCGT---TTGGGGG-----CAGAGGCACAGGAATGTTGGGTGCTGACCACCT---GTCTAC-TGGCTTTGGTCTTAGCTCATCTCCCATCGCTGCATCTGGC
Guinea pig scaffold_278909:6280-6402 + CACACTGGAGAAGGTGAGGCCAGCTGCCACGGGGTGGGGGCAGGTCACAGGCCCAGG--TGCCAACCGTTGTCCCCCTTCTCTCCATGTGATTC---CTCCAGCTCATTTCCCACCGCTGTTCCTGGC
Rabbit Unknown --------------------------------------------------------------------------------------------------------------------------------

mmu-mir-6990 (chr19:6988686-6988776 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr19:6988661-6988801 - --------------------------------*--------------------****-----------------------------------------------**-----------------#########################
TTCCTCCCAATACCCCCAGACTGGTGCTTGCC-CAGGGTGAGTCAGGGCTCTC----CTGTCATCTGGGCCCCCTCCGGGCTCTGGGAGGCCGCCACTGGAGCC--CTGCCTCTTCCTGGCAGGGAGCATCGAGTACAGCTGTCCGGC
Rat chr1:209590822-209590962 - TTCCTCCCAATACCCCCAGACTGGTGCTTGCC-CGGGGTGAGTCAGGGCTCTC----CTGTCATCTGGGCCCCCTCCGGGCTCTGGGAGGCCGCCACTGGAGCC--CTGCCTCTTCCTGGCAGGGAGCATCGAGTACAGCTGTCCGGC
Guinea pig scaffold_216847:1842-1981 + TTggTTggTGTtCCCCTAGACCTGTGCTTGCC-CGGGGCGAGTCAGGGCTTTC----CTGTCCACTGGGCCC-CTCCAGGCCCTGGGAGACCGCCACTGGAGCC--CTGACTCTTCTTGGCAGGGAGCATCGAGTATAGCTGTCCAGC
Rabbit scaffold_186533:157-291 - A------------CCCCAGACCTCTGCTGGCCCCGGGGCGAGTCAGGGCTGTCCCGCCTGCCAGGCGGGCCC-CCGTGGGCCCCGGGAGGCGGCCACTGGAGCCCGCTGCCTTTTCCTGGCAGGAAGCATCGAGTACAGCTGTCCGGC

mmu-mir-6991 (chr19:7497063-7497132 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr19:7497038-7497157 + ----------------------------------------******-------------------------------------------------------#########################
AGAGACGGGAGGATGGGACCTGAAGAGCAGTGGAGAACAG------GGACTGGGCCTGATTGATGGCACTCGCTCCAAGGCAGCCCTTTGTTCTTCTCCAGGCGACGCGCCGCTGTCCCCTGGAGC
Rat chr1:210106188-210106313 + AGAGCTGGGAGGATGGGTCAGGAGGAGCAATGGAGAACAGGGACAGGGACTGGGCTTGATTCTTGCCACTCGCTCCAAGGCAGCCCTTTGTTCTTCTCTAGGCGACGCGCCGCTGTCCCCTGGAGC
Guinea pig Unknown ------------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown ------------------------------------------------------------------------------------------------------------------------------

mmu-mir-6992 (chr19:8817461-8817569 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr19:8817436-8817594 + --------------*-------***-----------------------------*****----------------------*-------**-------------------------------------------------------#########################
GGTGGGGTGATACA-GTGTCTT---AAGTATATCTGCCTGTGATGGTTTGGCTG-----AGTGGAATTGGTTGTGTTGGAG-GTTATGG--TAACAGCCTCTTTCCTGCCCTTTACCACAACCTTCTCACTGATGATCATTTGCAGGCGCATTGGGAAAGATCTCAGCAAT
Rat chr1:211410304-211410420 + GGTGGGGTGACACA-GTGTTTTAAGAAGTAGATCTGCCTGGGA----TTGGCTG-----AATGGAATTGG--------------------------------------------TCCACAACTTTCTCACTGATGATCATTTGCAGGCGCATTGGGAAAGATCTCAGCAAT
Guinea pig scaffold_243742:9084-9239 + GATGGCCTAACTCA-G---------AAGTGGGCTT-CCTGTGGTGGCTTCGTTGTAAGGACTGTAATGGTTTCAACTGGAG-CTAATGGGAGAATAGTCTGTCTCCTACC---TTCCACAGTATTGTTACTAATGATCTTTTGCAGGCGCATTGGGAAAGACCTCAGCAAC
Rabbit scaffold_133394:4862-5030 + GGCAGGGTGATACACGTGTCT--GGAAGGAAGCTTGCTTTTGGTGACTTGGCTGTAAGGGCTGGGATTGGCTGTGCTAAGAGCTAGTGTGAGAATAAGCCCTCTCCCTCCCCCTTCCATGGTGTTCTCACTGTTGGTCATTTGCAGGCGCATCGGGAAAGACCTCAGCAAC

mmu-mir-6993 (chr19:10265865-10265929 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr19:10265840-10265954 + ------*-----------*-------------------------------------------------------------------------#########################
TAGAGT-CAGGACAGGGA-AAGTTGGTGGCTCAGTGGGAGAAACGGGTGTCTGTCTGGTCTCTGCTGCTGACTTGCGTTTGTTTCCTCACAGCTCGGGAGGGAAAAGAAGAAGCACA
Rat chr1:212679966-212680064 + -------------AGGGA-AAGCCAGCGACCCGGTGGGACAAATGG----CTGTCTGGTCTCCGCTGCTGACTTGCATTTGTTTCTTCACAGCTTGGGAAAGAAAAGAAGAAGCACA
Guinea pig scaffold_209128:275-329 - --------------------------------------------------CTGTGAGGTCACCACTGCT------------TTTCTTTACAGCTTGGGAGGCAGAAGAAAAAGTACA
Rabbit Unknown TAAACTTCTGGGCAGGGAGAAGCCAAGGTCGTAAGGGGGAAGA-------------GGCAGCTAATGCTGACTTGC-TTGCTCTTTTCACAGCTTGGGAAACAGAAGAAAAAGTACA

mmu-mir-6994 (chr19:11998218-11998290 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr19:11998193-11998315 + ---------------************-----------------------------------------------------------------------------------#########################
gggagttcccaaaca------------taaagagaccctgtcacaaaGGTGGGTGAAGCCGGTGACGATTGCTAGTTCTTCTGTGTCAACGATCTTCTCCGTCTTTGCAGCTACAGCCTGGACGAATGTCTCCCA
Rat Unknown ggca-ttcccaagcagtctgaaatacctaatgagtcccggtc-caaaGGTGGGTGGGGCCAGTGACGATTGCTAAGT---CTACATCAAAGATCCCGTCCCTCTTTGCAGCTACAGCCTGGACGAATGTCTCCCA
Guinea pig Unknown ---------------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_182323:15953-15997 + AA------------------------------------------------------------------------------------------TATTGTCCCTCCTTGTAGCTACAGCCTGGACGCATGTCTCCCA

mmu-mir-6995 (chr19:47348009-47348079 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr19:47347984-47348104 - --------------------------**---------------------------------------------------------*-------------#########################
TCGGCTAGGCGGGCTCAGATGGAGAC--AGACCTGGGAGTAGAAGGGGGAAACCAGAAATGAGGGCTTTAATGATGGTGTGTCCC-CTTCCTCTCACAGGTACCTCGGCAAAGAGGGTTGGGCA
Rat chr1:252608061-252608181 - ACCGTTGGACAAGCTCAGATGGAGACTGAGGCCCGGGAGTAGAAG-GGAAAACCAGAAATGAGGGCTTTAACGATGGCACAC-TC-CTTCCTCTCACAGATACCTAGGCAAAGAGGGCTGGGCA
Guinea pig scaffold_285884:54530-54650 + TTCTCTGGATGAGGCCAGATGGAGACCAGGGCCTAGGAGTAGA---GAATAGTCAAGCATCAGACTTCTAATGTTGGTGTGACCCACCCCTCCCCACAGATACCTGGGCAAAGAGGGCTGGGCG
Rabbit Unknown ----------------------------------------------------------------------------------------------------------------------------

mmu-mir-6996 (chr2:26325579-26325639 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr2:26325554-26325664 - ----------------------------------------------------*----------------------------------#########################
CCCAGGTCCTAACTGATTTCTGGACTGGGCTGCACAGGACAGAGCACAGTCA-GCATCATCCGACGGTGTCTCTGGTCACTCTGCAGGTGTACACTGTGAGATCAATGTTGA
Rat Unknown CCCAGTTCCTGATTGGTTGCTGGACTGGGCCACACAGGAC--AGTACAGCCA-GTATCTT----TGGTGTCTGTTGTCACTCTGCAGGTGTACACTGTGAGATCAACGTCGA
Guinea pig Unknown CG-----GCCAAC-GGCTGTGGGACTG-----CAGGGGT--GGGCACAGCCACACGTCCT----C------GAGGGTCAC-CTGTAGGTGTGCACTGCGAGATCAATGTGGA
Rabbit Unknown ----------------------------------------------------------------------------------------------------------------

mmu-mir-6997 (chr2:29851470-29851540 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr2:29851445-29851565 + -------*----------------*-------**---***---------------------------------***********------------------**------------#########################
CTTTGTG-TTTGAGGAATCCTCAT-CCCCAAG--TAA---CAGGCTGGAGAGGTGCAGAACAGAGTCTCTGGA-----------GTCTCTCAAACCTTACCC--TCCTGTTTCCAGGATCGAATTGATGGCATCACAATTC
Rat chr3:8987723-8987854 + TTT-GTGTTCTGATGAATCCTCATTCCCCAAG--TAC---TAGGCTGGACAGGTGCAGAACAGTCTCTCTGGAAGTTGGTTGCAGTCT-TCAAACCTTATCC--TCCTGTTTCCAGGATCGAATTGACGGCATCACAATTC
Guinea pig Unknown ---------------------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_198964:89006-89142 + TTG-GAGATACCATAACCCCTTAC-CCAAAAGATCAACGTTAGCCTGAAAACGTCCAGAACATAGTGGCTCAACACCAG-TCCAAACT-CACGACTTTGTCCTGTGCTGTTGGCAGGATCGAATTGACGGCATCACCATCC

mmu-mir-6998 (chr2:31467941-31468004 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr2:31467916-31468029 + -*-------*-*****---------------------------------------------*-**-------*----------*-----------------#########################
T-GCCTCCC-A-----TAGTGGCTTCCCTGGGTGGGCCTGGGCAGAGGGCAAAGTGACTCG-G--TGACACG-GGTGAGAGCT-GCTCTGTGCCCACACAGGGTGCCAGCCTCGGAGCCCCTGCAG
Rat chr3:10722592-10722705 + T-GCCTCCC-A-----TAGTGGCTTCCCTGGGTGGGCCTGGGCAGAGGGCAAAGTGACTTG-G--TGACACG-GGTGAGAGCT-CCTCTGTGCCCACACAGGGTGCCAGCCTCGGAGCCCCTACAG
Guinea pig Unknown ------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_153115:1747-1872 + TCATCTCCCCGGAAGCTGGAGTCTGCCTGGGGCGGGGCCGGGCAGATGGCATATGTGCGTGCGTCCGGCAGGAAGTGAGGGCCCTCTCTGTGCCCGTGCAGGGTACCAGTCTCGGAGCACCAGGAG

mmu-mir-6999 (chr2:91785027-91785087 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr2:91785002-91785112 - --------------------**--------------------**********---------------------**-------------------------#########################
GAGGCAGTTTTGCTGGGTAG--TAGGGAAGGAAGGAGAGTCA----------GCAAGCACCTGGCTGGCCCAG--GCTTCAGCTGTCCTCCTTTCTGTAGGAAAGCCATCACCAAGTCGGGCCTC
Rat chr3:76324096-76324208 - GAGGCAGTTTTTCTGGGTAG--TAGGACAGGAAGTAGAGTTA----------GCAAGCACCCAGCTGGCTCTGGGGCTTCAGCTGTCCCCCTTTCTGTAGGAAAGCCATCACCAAGTCGGGCCTC
Guinea pig scaffold_262121:5321-5419 - GTGGCGGC---TCCAGGTGG--TGGGA-AGGA---AAAGTCAGCTGTGCTCAGCAGG-----------------AACCTCAGCTGTCCCCTTCCCTGTAGGAAAGCCATCACCAAGTCGGGCCTC
Rabbit scaffold_145902:4342-4435 + G--GCAGAGACCCCAGGTGGGGCGGGA-AGGAAGTGAGGTT-----CGT---------------------CTG--GCCTCAGCTGTCGTCTCCTCTGTAGGAAAGCCATCACCAAGTCCGGCCTC

mmu-mir-7000 (chr2:92227541-92227603 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr2:92227516-92227628 - ---*********--------------------------------------------------------------------------****-----------#####################*####
GGC---------TGGCTGCAGAGGACAGTTGGGAAGAGGAGGGGACAGGTATCTGGACAGAGGTTCTGCCCTCAGCACCCACCTGC----CTGTCCTCCAGGAGAACAGACGCCTCCACATG-AACA
Rat chr3:76785126-76785248 - TGCAGATCCTGCTG---GCGGAGGACAATTGGGAAGAGGAGGGGACAGGTATCTGGACTGGGGTTCTGCCCTCAGCACCAACCTGCCTGTCTGTCTTCTAGGGGAGCAGACGCCTCCACATG-AACA
Guinea pig scaffold_278870:83057-83103 - tgg---------TG-----------------------------------------------------------------------ggTGggTGCCCTCCAGGGGAGCAGACGCCACCCCATGTAACA
Rabbit Unknown -------------------------------------------------------------------------------------------------------------------------------

mmu-mir-7001 (chr2:93262086-93262164 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr2:93262061-93262189 - --------------------------****--------*****------****----------------------------------------------------------------#########################
GAGCGTGTCCTGGGATTGCTGTGGTG----GAGGAGGC-----AGGGTG----TGAGCGTGAGCATCCCAGAGGCCCAGGTTCAAGTCCAGCCCTGACGCTCACACTCCCTCTGCAGCTGAAGAAGGAGATGGGGAACACAG
Rat chr3:77834555-77834685 - GAGTGTAGCCTCGGAGTGCTGGGGTG----GAGGAGGC-----AGGGTGTG--TGAGCATGAGCAGCCGTGAGGCCCAGGTTCAAGTCCAGCCCCGACCCTCACACTCTCTCTACAGCTGAAGCAGGAGATGGGGAACACAG
Guinea pig Unknown ----------------------------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown GAGCCTGCCCCCAGGGTTGTGTGCGGGGAAGAGGGGGCAGGACAGGGTGCGGCACAGTGTGGGAAGGCGTGAG--CCGAGCGGCACCCTGACCCCGGCCCTGGCCGCCCCGCTGCAGCTGAAGCAGGAGATGGGTGGCATCG

mmu-mir-7002 (chr2:113976252-113976306 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr2:113976227-113976331 - ---------------------------------------------------------------*-------------*----#########################
GAGGGCATTTTGTGATGTCGATTTATCTTTGGCTTCGGGGAGTACGTGGAAAATGAGCGCTTT-GTGCTTCCCCTTG-CCAGGCTCTACTCCCCACGAGGCGCTGGT
Rat Unknown GAGGGTGTTTGGTAGTGTCCA-----CTCTAGCTGCAGGGAATACCTGAAACATGGACGTGTT-GTGCTTGCATTT---CAGGCTCTGCTCCCCACAAGGCGCTGGT
Guinea pig Unknown GAGGGTGCTTCGCGATGTTCA-----CTCTACCTGGAGAGAATGCATGCAGAATTACTGCTCTGGTGTTTGTTTTTCTCTAGGCTTTGCTCCCCACAAGACGTTGGT
Rabbit Unknown -----------------------------------------------------------------------------------------------------------

mmu-mir-7003 (chr2:162893826-162893891 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr2:162893801-162893916 + -*--------*--------*******------------------------------------------------------------------***-*-------#########################
G-ATGCCTGT-GTCCAGCC-------CTTCACGTTCAGGTGTGGGGAGAAGCTGCGGCAGCCGAGAGCTGCGTGTCAGAGGCCCCGGGTTTT---C-CCCACAGGACGGACAATGCTGTGAAGAATCAC
Rat chr3:153938789-153938908 + T-CACCTTGG-TTGCAACA-------CTTCACTTACAGATGTGTGGATAAGCTGCAGCCGCTGAGAGCTGCATGTCAGAGGCCCTGGATTTTTTTCTTCCTCAGGACAGACAATGCTGTGAAGAATCAC
Guinea pig Unknown gaCACCTTAGAGTTCATCAGGTTGGGCCTTGCATGCAGATGTGGGA------TGCATGCACTAAAAGCTCAGCTTCAAAGATCCTGGT--TT------TCAGAAAATATACAATGCTGTGAAGAAGCCC
Rabbit scaffold_97123:4614-4673 + G----------------------------------------------------------------AGCTGGGAGGCTGAGGTCCCGTT--TT---CCCCTGCAGGACAGACAATGCTGTGAAGAATCAC

mmu-mir-7004 (chr2:168466196-168466259 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr2:168466171-168466284 - ----------------*--***********-------************************--------------***--------------------------------------------------#########################
CACAGGAATCCCTGTA-AT-----------AGACACA------------------------TGACCTTCCGTGGA---TGAGGCCTGTGCCGTGACTCTCAGTGACACCCACTCCCTCCTTCACGCAGGCTGTCTTCTCGTCTGTGTTCTACT
Rat Unknown ---------------------------------------------------------------------------------------------------------------------------------------------------------
Guinea pig scaffold_239678:1328-1476 + CCCACGAGCTCCTGTACCTCGAGTGCTTACAGTCACGTGGAGAGGCACCGGCACCGCCTCCGGTCTGC--ACACGTCGTCGGGGCTCTGGCGGGACTCAGGGTGACATCCTCCTCTCTC--CCCGAAGGCTGTCTACTCTTCCGTGTTTTATT
Rabbit scaffold_86194:5205-5357 + CCCAGGGAGCACTGGTCACAGCATGCTGGCAGCGGGGTGCGGGGCAGGGGGTGCCGGCCGCTGTCTCCCCGCGGGCTGCCGGGGCTCCGGCCGGGCTCCTGCTGACGCCCTCCTCTCTCCCGGCACAGGCCGTCTTCTCCTCCGTGTTCTACT

mmu-mir-7005 (chr2:179914460-179914528 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr2:179914435-179914553 - #############-----------------------------------------------------------*----------------------#########################
AGCCAGCAAGGCGGTAAGGCAAGGAAGGGGCCTGGGGATGGGAGGACCAGCAGAGAAATTTGGCTTTCCTGT-GCCTGCTACCCATCCCTTGCAGATCCAAGTGTTTCTATTGGCTGGCA
Rat chr3:169237236-169237351 - AGCCAGCAAGGCGGTGAGGCAAG----GGACCTGGGGACAGGAGGACCAGCCGAGAAATTTGGCTTTCCTGAGGCCCATTACCTATCCCTTGCAGATCCAAGTGTTTCTATTGGCTGGCG
Guinea pig Unknown ------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown ------------------------------------------------------------------------------------------------------------------------

mmu-mir-7006 (chr2:181322605-181322673 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr2:181322580-181322698 - #############---------------------------------------------------------------------------------#########################
CTGCCCCCAAGAGGTCAGTGTTGGCCCATGTGGGGGTGTTCAAGACTTGGGAACCTGGCTGATTTCTTACCTGGTTTCTGACCTGGATCCCCAGGGCTGTGGGGCTGCCTTCTCCAGCC
Rat chr3:170726662-170726780 - CTGCCCCCAAGAGGTCAGTGTTGGGCCTTGTGGGGCTGTTCAGAACTTGGGAACCTGGCTGATTTCTTACCTGGTTTCTGACCTGGATCCCCAGGGTTGCGGGGCTGCCTTCTCCAGCC
Guinea pig Unknown -----------------------------------------------------------------------------------------------------------------------
Rabbit Unknown -----------------------------------------------------------------------------------------------------------------------

mmu-mir-7007 (chr3:20122189-20122258 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr3:20122164-20122283 - ---*------------------------------------------------------*-------------------------*-------------#########################
CTG-GTGTTTTAAGCATCAAGTGAACCCACATCAGAAGAGGCAGTGGAGGAGATGGTA-CACAGCACATTCTGATCCCATCCAC-GTTTCTTCTGTAGCTTCTCCAAACACCAACAAACCATG
Rat chr2:105382998-105383117 - CTG-ATGTTTTAAGCATCAAGTGAACCCACGTCAGAAGAGGCAGAAGAGGAGCTAGTA-GACAGCACATTCTGATGCCATCCAC-ATTTCTTCTGTAGCTTCCCCAAACACCGACAACCCATG
Guinea pig scaffold_282157:141318-141437 - CAGAATGTTTAAGACGTTTTGGGGATTCACATCAGAAGAGGCAGGGACTGTACTGATGGCGAGGCAGATGGTGATCTCACTCA---TGTCTTCCGCAGCTTCTCTAAACAATGATAATCCGTG
Rabbit scaffold_178532:50934-51051 + CAG--TGTTTAGAATGATTATGGAATCCACGTTAGAAGAGGCAGAGCCTATACTA-TA-TGGAGCAGACTGTGATCTCATCCACCATATCTTCTGCAGCTTTCCCTGACACCAGTAA-CCGTG

mmu-mir-7008 (chr3:30937888-30937950 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr3:30937863-30937975 + -------*----------------------*******------------*-----------***----------**--------------------*------#########################
TGAGTCA-TCTCAAGAGCCTTCATGCTGCT-------CTGTGGGAGATG-CCAGGAGCCGT---ACGACTAACT--GACGTGTGCTTCTTGCCTCT-TCTCAGGTTGTTTTTTGTCATAGAATATGTA
Rat chr2:116753225-116753336 - G----------------CCTTTATGCTGTTGCTGTTGCTGTGGGAAATGGCCAAAACCTGTGCGACGACTCACTGTGACATGTGACTCTTGCGACTGTTGCAGGCTGTTTTTTGTCATAGAATATGTG
Guinea pig scaffold_291182:50285-50335 - G-------TTTCATGGGTTCTT-----------------------------------------------------------------TTT---G-TG-TTTAGGTTGTTCTTTGTTATTGAGTATGTA
Rabbit scaffold_81009:5156-5215 + GATATTGGTTTCATGAGTCCTC-----------------------------------------------------------------T--CCCG-TGTTGTAGGTTGTTCTTTGTCATAGAGTATGTA

mmu-mir-7009 (chr3:36374383-36374446 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr3:36374358-36374471 - -----------------------------------------------------------------------------------------#########################
CGACTCCTCCACCAAGGGCTCAGGGCCCTTTTGGGGTCAGGGGACCAGAGCTCCAGTGACCCTGTCTCTCTTTTCCCCTCTCCCTGCAGCTCCAGTCCACTCCTGACCGACAGC
Rat chr2:122979584-122979697 - CGACTCCTCCACCAAGGGCGCAGGACCCTTTTGGGGGCGGGAGACCAGAGCTCCAGTGACCATCTCTCTCTTTTCCCCTCTTCCAGCAGCTCCAGCCTACTCCTGACCGACAGC
Guinea pig Unknown ------------------------------------------------------------------------------------------------------------------
Rabbit Unknown ------------------------------------------------------------------------------------------------------------------

mmu-mir-7010 (chr3:81910170-81910231 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr3:81910145-81910256 - --------------****-------------------------------------------------------------------------#########################
TACCCCAGTAGCCA----TTTCCTCTCTGGTTTCGGAAAGGATTGGGAAACTTGACTAATGCATGGTAACAGGTTCTCCTTTCCTTTGCAGGTTATGGATCTCAAAGGTCAAATGA
Rat chr2:173769135-173769244 - CATCCCAGTTTCCA----CTCCCTCTGCAGTTTCAGGAAGGATTGGGGAACTTGACTAACCCAT--TAATGGGTTCTCCTTTCCTTTGCAGGTTATGGACCTCAAAGGTCAAATGA
Guinea pig Unknown --------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_104628:4744-4859 - GATCGCTGTTATCAACGTCCTCTCCTTTTGTCTCAGAAAGGTGTTGGAAACTTGAATAAACCACAACAATTGGTTCACCTTTGCTTCACAGATTATGGACCTCAAAGGCCAAATGA

mmu-mir-7011 (chr3:88244801-88244873 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr3:88244776-88244898 - -----*-----------------------------------******----------------------------------------------------------#########################
GTGTT-CTCACCATCTGAGGAAAGAGGGCAGAGGAGGATGG------GAGAGGGAGGTGTGCACCCACTCAGGAGCTGACACACTCTGCTTCCCTCCTCCTCTAGTGCTCCATGGGCCCCTCCTCTGACA
Rat chr2:180556007-180556136 - GTTTTACCCACCACCTGAGGAAAGAGGACAAAGGGGGGTGGTAGAGGGAGAGGGAAGGGTACACCCACTCAGGAGCTGACACACTCTGCTTCCCTCCTCCGCCAGTGCTCCATGGGCCCCTCCTCTGACA
Guinea pig Unknown ----------------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown ----------------------------------------------------------------------------------------------------------------------------------

mmu-mir-7012 (chr3:90074071-90074134 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr3:90074046-90074159 + ----------------------***-------------------------------------------------------------*****------#########################
GAGAGGTGAGCCTAGGGCTGGG---CTGGACGGAAGGAGAGGAGTTGGCAGGGACTAGCTATGAGCATCCTGACCTGTGGCTCCTC-----TCCCAGATGTCTCCCTATGACAACCTGCTCC
Rat chr2:182513083-182513196 + GAGAGGTGAGCCTAGGGCTGGG---CTGGATGAAAGGAGAGGAGTTGGCAGGGGCTGGCTATGAGCATCCTGACCTGTGGCTCCTC-----TCCCAGATGTCTCCCTATGACAACCTGCTCC
Guinea pig scaffold_281346:49781-49894 - tggggctgga----tgggtgggtgggtgggtgggtcgAG-GGAGCT-GCAGG-GCTGTC-ATCGGCATCCTGACCCATGGTTCCTCTACCCTCCCAGATGTCTCCCTATGACAACCTGCTCC
Rabbit Unknown -------------------------------------------------------------------------------------------------ATGTCTCCCTACGACAACCTGCTCC

mmu-mir-7013 (chr3:94808090-94808161 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr3:94808065-94808186 + -----------------*----***--------------------------------------------------------------------****************--------#########################
GGAAACATGGCTGGGGC-CTCC---CCTGTTCGGTATGAAGAGGCCAGTGTTGTAGCTTGAGATCCAGCCTAAGCCACACTTACTGTTGCCTC----------------TTCCTCAGGCACAACGGGAACATCCTTCTGGAC
Rat chr2:189904417-189904538 + GGAAACATGGCTGAGGC-CTCC---CCTGACCAGTATAGTGAGGCCAGTGTTGCAGCTTGAGATCCAGCCTAAGCCAAACTTACTGTTGCCTC----------------TTCCTCAGGCACAATGGGAACATCCTTCTGGAC
Guinea pig scaffold_264841:31398-31525 + GGAAGCATG--TAGGGCACTCCCACCCAACCTGGTGTCATGTGGCCAGTGGTTTTACTG------------CAGTCAGACTCACCGCTgcccctttctctcctctcttcttcctcagaCACAATGGGAACATTCTTTTGGAC
Rabbit scaffold_195040:72201-72310 + GCAGACATGGCAGGGGT-CTCC---CCTGCCTGGTGTC-------------------------TGTGGCCTCGGTGAGACTTACCGTCACCTCCTCCTCTCCTCCC---CTCCTCAGACACAATGGGAACATCCTTCTGGAC

mmu-mir-7014 (chr3:95538834-95538896 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr3:95538809-95538921 - ----------------***-----------------------------------------------------------------****-------#########################
tgtGGgtTttGggtgg---GtggggtGgtGGgTTTGGGTGgTGTGGttGGGtgtGtGtgggTGtGgTCTTCCTCTTTCATACCA----ACCACAGTAAACAGATTCCGGGGCTGATCCAG
Rat chr2:190525853-190525967 - tgtGGgtTtttggtGTggTGtggggttgtGGgTTTGGGTGgTGTGGtt----gtttGtgggTGtGgTCTTCCTTTCTCTTGCCAATCAC-CACAGTAAACAGATCCCTGGCCTGATCCAG
Guinea pig scaffold_285979:30631-30717 - AA---GCATTTGATACCAGG------------------------AGAT-ATTCAAAGACCCTCACCCCTTCCTTTTTTATAAC----AA-CATAGTCAACACATTCCCGGACTGATCCGG
Rabbit Unknown ------------------------------------------------------------------------------------------------------------------------

mmu-mir-7015 (chr4:120645864-120645927 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr4:120645839-120645952 - ---*--------------------------------------------------------------------------------***------#########################
GTT-CCATGCTGACTGGTTCTCCTGTTGCCCTCTGTGCAGTAGGCTGTGGGTTCCATGCTGACTGACTTTCTCACTGTCCTCTG---CACTAGGCTGTAGGTTCCATGCCAACTGCAG
Rat chr5:141549893-141549923 - ---------------------------------------------------------------------------------------CACTAGGCTGTAGGTTCCATGCCAACTGCCG
Guinea pig scaffold_281355:94575-94639 + GGGACTATTCCAAC----TCTGCCTC-------------------------------------------------TGCCCTCTGTGCCCCCAGGTGGTAGGTTCCATGCCAACCGCAG
Rabbit scaffold_202969:16188-16230 - ---------------------------------------------------------------------------TGCCCTCTTCACCCTAAGGTTGTCGGTTCCATGCCAACTGCAG

mmu-mir-7016 (chr4:129361744-129361815 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr4:129361719-129361840 - -------------**-------********---------------------------*-------------------*-------------------------------#########################
CACAGTGCTATTC--TAGCTTC--------TAGGTCGACTCAGGGAGGGGAGCGAGA-GTAGGCCACTATGGACATG-CTGAGCCTGACCTGCCTCCTGCTCTCCCCAGAATACACATTACTATGACAAGCGCT
Rat Unknown --------------------------------------------------------------------------------------------------------------------------------------
Guinea pig Unknown --------------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_179902:7219-7349 - CCCAGGATTATCCATTAGGTTACTCCAAGGCAGGTAGAAGCAGGGAAGGGAGAGGGATGGAGACCATTCTAG---TACCCAGGCCTCACTCACCTCCTGCTGTCCCCAGAACACACATTACTACGACAAGCGTT

mmu-mir-7017 (chr4:132751570-132751631 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr4:132751545-132751656 + -----------***********---------------------------------------------***--------------**-----------------#########################
TATAATCCTGT-----------CCTGATGATACTCAGTCCCAGAGGGTTGTGAGACTAGGGCTGTGC---TTCCTGCCTAACCC--TGCTCCTCTCCCTCCAGGCTTTCAGCTGCGAAGGGTTGAAGA
Rat Unknown --------------------------------------------------------------------------------------------------------------------------------
Guinea pig scaffold_239623:3471-3598 - CCCAGTCCCCTCAAAGTGGCCACCTGCCCATGCTCAGTGTTAGATGGATTCTTGCTTAGTGTCGAGGACATGTCTTCTCAACTTTCTCCCTCTCTGCTGTCAGGCTTTCAGCTGCGCAGGGTTGAAGA
Rabbit scaffold_204050:40832-40938 - TTCCGTACCcc----------------ccagccccagccccag--ccTGGACAGAACCGGGC--AGGACACGCCTCCTTCACTC-CTCTCTCTCTGCCGCCAGGCTTCCAGCTGCGCAGGGTTGAGGA

mmu-mir-7018 (chr4:137094201-137094285 +)

mirtron (novel)

Species Coordinate Alignment
Mouse chr4:137094176-137094310 + #########################----------------**--------*******************************-----------*--------------------------------------------------#########################
TTTCATCTGTACGGCCAAGAGCAAAGTGAGCAGACAGGGAG--TGGTGGGG-------------------------------GAAGTCTTCTC-CTGGGCTCCCTGAGCCCACACGTAACCCTCACCCTGCTGCCGGCTTGCAGTCCCCAGCCTACACCCTGGTATGGA
Rat chr5:156295152-156295285 + CTTCATCTGCACGGCCAAGAGCAAAGTGAGCCGACAGGGAG--AGGTGGGG-------------------------------GAAGTCTTCTC-CTGGGCTCCCTGAGCCCACGCATG-TCCTCACCCTACTGCTGGCTTGCAGTCCCCAGCCTACACCCTGGTGTGGA
Guinea pig Unknown -------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown CTTCATCTGCACTGCCAAAAGCAAGGTGGGCAGGCAGTGAGGCAGGCGGGGCAGGGGTGGAGCCAGGCAGCATCCCTGTCCGGGAGCCTCCCCGGTGAGCTCCT----------------CCCCAT--TCCCTCTGCCCTGCAGTCCCCAGCCTACACGCTGGTGTGGA

mmu-mir-7019 (chr4:137872047-137872115 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr4:137872022-137872140 - ----------------------------------------------------------------------------------------------#########################
TCCTTACCTTGGTGGTAGCGTCTGGAGGGGATCTGGGAGGGGCTGTCAGGAGTACAGGCCGACTGCACCGCTCACCTTGGCCGCCTCTCTGCAGATGGCTGTCCCTGGCTAGTGATCTC
Rat Unknown TCCATATCTTGG-GGTGGCATCTGGAGAG-GTCCGGGAGGGACTGGCAGGAGTACGGGCAAACCGTGCTGCTCT-----GCTACCTCTCTGCAGATGGCTGCCCCTGGCTGGTGATCTC
Guinea pig Unknown -----------------------------------------------------------------------------------------------------------------------
Rabbit Unknown -----------------------------------------------------------------------------------------------------------------------

mmu-mir-702 (chr5:137467312-137467413 +)

mirtron (known)

Species Coordinate Alignment
Mouse chr5:137467287-137467438 + #######################################################***##################*********#################*********###################################--#########################
TTTCTGCAAGAGCGTCCGGGACAAGGTGAGTGGGGTGGTTGGCATGGGTTGCCCA---TGGGGACTCGACGCTGTG---------CCCACAGCCTCCTGATG---------TCCTCCTCACGCATGCCCACCCTTTACCCCGCTCCAGGGCATCTTCCTCCACCTCAGCAACC
Rat chr12:20861532-20861685 + TTTCTGCAGGAGTGTCCGGGACAAGGTGAGTGGGGTGGTTGGCATGGGTTGCCCAGTCTGGGGACTCGACGCTGTGTC----------ACAGCCTCCTGATG---------TCCTCCTCACGCATGCCCACCCTTTACCCCACTCCAGGGCATCTTCCTGCACCTCAGCAATC
Guinea pig scaffold_223279:12341-12493 - CTTCTGCATGAATCTGCGGGACAGGGTGAGTGGGCAGA-C--------------AGCCTGCGGCCCTGGTGCTTAGACACCTAAGCTAGCAGCCACCTGGTGCCACCCCCATCCTTCTCACGCACACT-----GCCATCCCACGCCAGGGCATCTTTCTCCACCTCAGCAATC
Rabbit Unknown -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------

mmu-mir-7020 (chr4:139199957-139200026 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr4:139199932-139200051 + ---*-------------------*-----------------------------------**********************-------------------*******-------------------#########################
GCT-GTCTGGGCTGTTGTGTGGG-CTGAGGTCTGGGATGGTGGAGAGGGTGACCAGATG----------------------GAGACATCGTAGGCACTAA-------CCCCTCTCTTCTCTCCCAGGAGATCTTCGGTCCTGTGTTGACAG
Rat chr5:158447981-158448075 + GCT---CAGGGCTGTTGTGTGGG--------CCGGGATGGTGGAGAAGGTGAC---------------------------------------------AACTCCTCTCCCCTTCCCCCTCTCCCAGGAGATCTTCGGCCCTGTGCTGACAG
Guinea pig scaffold_166759:8715-8822 + G---------ACTGAGGCGTGGA-CAGAGGCCCGGGGCCAGGGAGAGGCAGGTGGAGTG----------------------GGGAC-TAGGGGATGCTGA-------CC--AT-TGCTTCTCTTAGGAGATCTTCGGGCCTGTGCTCACCG
Rabbit Unknown TCGTGCGAGGGCTGAGGTGGGGGACTGAGCACTGGGGAGAGGGA-----AGACAGAGTGAGGAGACTGGGAGGGCTCTGGC--CAG-GAGGAGAGACTGA-------CCCCAtctctctctcCCAGGAGATCTTTGGGCCAGTGCTGACTG

mmu-mir-7021 (chr4:142726003-142726063 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr4:142725978-142726088 - --------------------****--**---------------------------------**---------------------------**********----#########################
TATCTTAGCAGCTTCTAGCA----AT--CGAGTCATAGGAGTTGATTACAGAGCAAGCGCT--GTGTCTTCATCTCTGTGCTTCTGCTCC----------TTAGGTCCAAAAGAAGAGGATGAGAGGCC
Rat chr5:161991681-161991799 - TATCTTAGCAGCTTTCAGCA----GT--AGAGTCCTAGGAGGCCATC--ACAGCAGCTACT--GGGTCTTTATCTTTGTGCTTCTGCTCCTCTGTGCTCCTTAGGTCCAAAAGAAGAGGATGAGAGGCC
Guinea pig scaffold_292968:11102-11225 - T--GTTAGCTATACTTATCACATAATAGGCAGACTCAGGAATTGATTAAAGAGCAGCTGGTT-TTGCGCTCAggTgTGTGTTTTTgTTgTTGTTT-TTT-gTtGGTggTtttGttGtGGttGtGtGtgg
Rabbit scaffold_196747:36728-36828 - T---------------------------TGAACCATAGGAGTGGGTGCCAGAGTGGCTGGTTTCTGCCCTCACGTCCACACCTCTGCTTGTGTGCACTT-CTAGGGCCTAAAGAAGAGGAAGAGAAGCC

mmu-mir-7022 (chr4:147521045-147521105 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr4:147521020-147521130 - -------------**------------*----------------**------------------------------*---*------------#########################
GTCACCTGGGTCC--CTTGAGCCACCT-ACCTGGCAAGGAAGGG--CTCTGTTTAGCATGCTGGCAATACAAGCCT-GAC-CTCTGCCCCCAGGATGTGCCTCAAATCCCAGATGGTG
Rat chr5:165223794-165223906 - GTCACCTGGGTGC--CTTGAGCCATCT-GCCTGGCAAGGAAGGGTTCTCTGTTTAGCATGCTGGCAACACGAGCCT-GTC-CTCTGCCCCCAGGATGTGCCTCAAGTCCCAGATGGTG
Guinea pig scaffold_213067:1797-1901 - GACCATTGGGGGCTGATAGAGCCA----------CAAAGGAGGG--CCTTGCACAGCACCCCTGAAACACAGTCCT-GCCTCCCATCCCCCAGCCTGTGCCTCAAGTCTCAGCTGGTG
Rabbit scaffold_212414:14582-14694 - CACTCCCGGGCTC--CGGGAGCTGCCGGGCCTGGCGAGGAGGGG--CCGTGCAGTCCCAGCTCGGAACACAAGCCTTGCC-CTCTGACCCCAGCATGTGCCTCAAGTCCCAGCTGGTG

mmu-mir-7023 (chr4:149029613-149029676 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr4:149029588-149029701 - ############-----------------------------------------------********------------------------------#########################
ACGGAGGAGGAGGTGAGCTCCGGTCTTGGAATGGGGGAGCTGGGATTGGGCGTGGAGCT--------TGGAGGCCTCACCCTGTCTGCGCCCCTCAGCAGCTGCAGCTGCGGGAGATCCTGG
Rat chr5:166741869-166741981 - ACAGAGGAGGAGGTGAGCTCAGGTCTTGGGATGGGGGAGCTGGAATCGGGCACGGAGC---------TGGAGGCCCCACCCTGCCTGTGCCCCTCAGCAGCTGCAGCTGCGGGAGATCCTGG
Guinea pig scaffold_270160:3912-4018 + ACTGAGGAGGAGGTGAGCTGGGGCCC-------------GGGGCA--GGGCGTGGAGCTGGCAGAACCAGAGCCCTCATGCTGCCCACGCCCCTCAGCAGCTGCAGCTGCGGGAGATCCTGG
Rabbit scaffold_156203:10825-10939 - TCGGAGGAGGAGGTGAGCGTAGCGGGTGTGCGGGGGGTGGGGGCATGGG--GGGGGCCTGGCCGCCCGAG----CTCACCC-CCATGGGCACCTCAGCAGCTGCAGCTGCGGGAGATCCTGG

mmu-mir-7024 (chr5:34241559-34241620 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr5:34241534-34241645 - ----------------------****************-----------------------------------------------------------------#########################
ATGCTAAGCTTGGGAGGTGCCC----------------CTCATGGGTTGGGGGATGGGTTGCTTGGCCCTAGGCACCTGCCCAGCAGTCCCTGCTCCCTACAGAGAACCCATGCCCGGAGCAGGGGGA
Rat chr14:82526092-82526216 + C--CTAGGCTTGGGAGGTGTCCCCACCCCGCCCCCCGCCCCATGGATTGGGGAATGGGTTCCTTGGCCCTAGACACCTGCCCAGCAGTCCCT-CTCCCTACAGAAAACCCATGCCCGGAGCAAGGGGA
Guinea pig scaffold_170106:1432-1528 + G--GGGGGgtGGGT---------------------------gTGGGGgGGGGGgtGGG-GgCTTGGCCCCATGCCTGGGCCCAACTTTCCCT-GTCCCTGCAGAGAACCCGTGCCTGGAGCAGGGAGA
Rabbit scaffold_79608:646-685 - C---------------------------------------------------------------------------------------CTCT-CTCTCCCGAGAGAGCCCGCGCCAGGAGCAGGGAGA

mmu-mir-7025 (chr5:75572860-75572929 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr5:75572835-75572954 + ###################################################---------------------------------------------------------------------
CAAAGAACAACCTCAGCGTTGTGGCCCGTGAGCTGAAGCTGGTGGCTCCCAGTGAGTTTCTCAGTAGGCAGCACAACTCCAGCTCACCAGCCACGCCCTGTGTTCCTCAGGTGGGACGTG
Rat chr14:35392131-35392250 - CAAAGAACGACCTTGGCATTGGGAACAGAGAGCTGAAGCTGGTGGCTCCCAGTGAGTTTCTCAGTAGGCAGGACAACTCCAGGTCACCAGCCAAGCCCTGTCTTCCTCAGGTGGGATGTG
Guinea pig scaffold_281579:12811-12929 - CCAAGAATCTCCTTGGGTCCAGCAGCCGGGAGCTGAAGCTGGTGGTTCCCAGTAGGTTTCTTAGTAGTCAGGACAGCAGTAGGTCATCAGCTGAGCCCTGTTATCCTTG-GTGGGGTGTG
Rabbit scaffold_190372:11011-11129 - CCAGGAATCCTCTGGGCACGGAGAACCGCGAGCTGAAGCTGGTGGCTCCCAGTGAGTGACTCCAGAGTGAGGCCGACTCCAAGTCGTCCGCTGGGCTCTGGGTCCCTCGGG-GGAGCTCG

mmu-mir-7026 (chr5:111095094-111095160 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr5:111095069-111095185 - -------*-----------------------------------------------------********************************************--------------------**------------#########################
AGTTACA-CTGGCCCAAATCCTTCGCTGCGTTTCTGAGACCATGGGGTATATGCAGTGGTT--------------------------------------------CTGGTAACATGTGCTTTCTG--GTCTTGGCTTAGGCTTCTCCACAGACGGTGACGCTCA
Rat chr12:46141658-46141817 + TGTTACA-CTGACCAAAATCCTTTGCTGTTTTTCTGAGGCCATGGGGTGTATGCAGTAGTTCTTTTGCTGGGGGGATGGGGGGGTAGGTTTGCCAGGACTGTTCTCTGGTGACATGTGCCTTCTG--A-TTTGGCTTAGGCTTCTCCGCAGACGGTGACGCTCA
Guinea pig Unknown --------------------------------------------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_211032:48324-48389 + GGTTCTGGTTGACTCAAGTGCTC--------------------------------------------------------------------------------------------------TCTGCTGTCTTGGCTCAGGCTTCTCCACAGACAGTGACGCTGA

mmu-mir-7027 (chr5:114854477-114854548 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr5:114854452-114854573 + -----****************-*--------------------------------------------------------------------------------**-----------#########################
CGGGC----------------T-GGTTTAAGTGGTGTGCTTTTCCCCTGGAAAGGAAGAAACAGCAGAGCAGCTGGGGTCCCTACATGAAGCTCGGGTTTCTC--TCCTCTTCCAGGTCTTACGTACCTGGATGACCTGCT
Rat Unknown ---------------------------------------------------------------------------------------------------------------------------------------------
Guinea pig scaffold_276006:3716-3855 - CACGCATTAAATGATCAATAATGGAtttaagtgttttattttcccaatgaaaagg-agaaataacAGATGAGATGGAGTTCCCATTTGAAGCTTGAGTTTCTCTGTCCTTTTCCAGGTCTCACTTACCTTGATGACCTGCT
Rabbit Unknown ---------------------------------------------------------------------------------------------------------------------------------------------

mmu-mir-7028 (chr5:115169524-115169587 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr5:115169499-115169612 + ---------------------------------------------******************--------------------------------------------#########################
GGGTTGGTAAGGATGCGGCTGTAGCTGGGCTGAGGCTTGGGTCAG------------------GAGGTTTAGACTGAAATGCAAACCTTCTCTTCCCCCTCGGCCAGGTTCTGACCGGGAGGCAGCAGCAGA
Rat chr12:43168924-43169037 - GGGCTGGTGTGGATGTGGCTGTATCCAGGATGAGACTTGGAACAG------------------ATGCTTTAGACGGAAATGCAAACCTTCCTTTCCCCCTTGGCCAGGTTCTGACCGGCAGGCAGCAGCAGA
Guinea pig Unknown ------------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_212548:44567-44685 + GGCTTTAGAC-------------CCGAGGCTGAGGGTTAGGTCGCCTGCGGAGCTGCCTGGCCAAGGCTTGTTCTCAAGTCTGCTGCTTCCTTCCTGCCGAGGCCAGGTCCTGGCGGGAAGACAACAGCAAA

mmu-mir-7029 (chr5:116030958-116031018 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr5:116030933-116031043 + ---------------------****------------------------------*-*---------------------------################################
AGAGCCGGGACCCCTGGGAAG----AGAGGTAAGTCTGGACGCTCGGCTGCCAGC-G-CCCTGAGCTGTGGCTCTGTGTGTCCAGATCAGCTGAAGTCCAACAGCCCCCGCCTGATG
Rat chr12:42298122-42298233 - GGAGCCAGGGGCACTGGGAGG----AGAATAATGTCTGGGCCATCGGCTGCTACT-GCCCCTGAGCTGTGGCTCTGTGTATCCAGATCAGCTGAAGTCCAACAGCCCCCGCCTGATG
Guinea pig scaffold_282248:207035-207149 - AGAGCAGGTTGTGTGGGAAAGA--CAGACTAAAGTCTGGTTGCTCAGCTGCTGGAAGCCCTTAAACAGTGGCTCTGTTTGTCCAGATGAACTGAAGTCCAACAGCTCGCGCCTCATG
Rabbit scaffold_204309:77784-77900 + AGAGTTGGGAGCCTGGAAAAGATACAGATGAATGTCTGGACACTTAGTTGTGGGCAGTCTCTGAGCAACGACTCTGTGTGTTCAGGTCAGCTGAAATCCAACAGTCCCCGCCTGATG

mmu-mir-7030 (chr5:116095582-116095641 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr5:116095557-116095666 + -----------*---------------------*************---------------------------------------*--------------#########################
CATGCAGTTCA-CAGAGAAATAGAAATATCCTG-------------GGGAGGTGGCTGTGCTAGTCCACGGGGTCAGCCTTGCTC-TGTTATCTCTCCAGATGTTCAACTGTATCACAGAGCTGG
Rat chr12:42230121-42230228 - CTCGCAGTTCA-CAGAGAAATAGAA-TGGCCTG--------------GGAGGTGTCTGTGCTAGCCCGCGGGGTCAGCCTTACCC-TGTCGTCTCTCCAGATGTTCAACTGCATCACAGAGCTGG
Guinea pig Unknown CACACAAAGCAGCTTGGAAGTGGAAACGG-CTGGGCCCCCAGCAGGAGGAGGTGGACATGCTGGACCACAGAGGCAGCTCTGCCCATGTCATCTTTCCAGATGTTCAACTGCATCACAGAGCTGG
Rabbit scaffold_157076:1299-1372 - ----------------------------------------------GGGAGGCGTCCTCGCCAGGCCTGAGGCCCTGCCT----C-TGTCTCCCGCACAGATGTTCAACTGCATCACAGAGCTGG

mmu-mir-7031 (chr5:122269218-122269282 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr5:122269193-122269307 - --------------------------------------------------------------------------*----------------#########################
GCCTCCTTCCTCTGGAGAAACTACAGACAACCTGAGAGGCCTGAAGGGTGGGAGCAGCCTTGAATGACCAACCC-TCTTGCCCTCTCCTAGAGCTCAAAGCCCAAGCTCCAAGAGG
Rat Unknown GCCTCCTTCCTCTAGAGAGACTA-------CCTGAGAGGCCTGAGGGGGGGGGGAAGCCTTGAATGAT----CC-TCTTGC--TCTCCTAGAGCTCAAAGCCCAAGCTCCAAGAGG
Guinea pig Unknown --------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_206816:90286-90346 - GG-------------------------------------------------GACCCGTCTTGAGTGCC----CCTTCTTGG--TCTCCTAGAGCTCAAAGCCCAAACTGCAAGCAG

mmu-mir-7032 (chr5:124446861-124446939 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr5:124446836-124446964 + #################----------------------*******************-------------------------------****-**-****--------------*****------------------#########################
AGAAGATTAAGATGGAGGTGAGGGGCGTGGCCCAGGGTG-------------------GTCCCCGAGAGGGTGGTCCCCACATGGGCAA----A--C----CAGGGGTCCATCCT-----CTCGGTACCGCCCTGCAGGCACAGCGGTACATCTCCCAGCTGA
Rat chr12:33720709-33720839 - AGAAGATTAAGATGGAGGTGAGGGGTGTGGCCACGGGGG-------------------GCCCC--AGGCGGCGGTCCCCACGCAGCCAGCGGGG--C----CGGGGACCCACGCT-----CCCTTCCCTGCCCTGCAGGCCCAGCGGTACATCTCGCAGCTGA
Guinea pig scaffold_263799:844-984 + AGAAGATCAAGCTGGAGGTGAGGCGG-CCGCCTCGggtgggcaggggctgggggcAGGACCCC--AAGGGG---------------CAC----AGACCCCGCACCGTCCCATCCTGCCGTCTTGCTGCCCGCCCGCAGGCTCAGCGGTACGTGGCACAGCTGA
Rabbit Unknown -------------------------------------------------------------------------------------------------------------------------------------------------------------------

mmu-mir-7033 (chr5:135859600-135859680 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr5:135859575-135859705 - -*----------------------*******--******-----------------------------------*----------------------------------------------#########################
T-GTCTTGTCTATCCTTCTCGGCT-------CT------TTTAGTCTCCAGGAGTCTGAGGGGCAGGGTCGTCT-CCAGCATCTTGGGCTTGGCCTAACCTGCCTCCATTCTCTTGGGCAGCCTCCACCCCCAGAGCTTGGCTATT
Rat chr12:22440921-22441046 + T-GTCTTATCGATCCCTCTCAGCT-------CT------TTTAGTCTTAGGGAGTCTGG--GGCAGG-TT-TCC-ACAGC-TTCTGGGGTTGGTCTAACCTGTCTCTGTTTGCTTGGGCAGCCTCCACCCCCTGAGCTTGGCTATT
Guinea pig scaffold_231443:3745-3872 - C-ATCATGCCTGTTGCCCTCCGCA-------CG------TGTTCTTGGGGGGAAGCTAAA-TGCAGG-TT-TCTCACA-CTTGCCTGCGTTGGCCTGACCTGTCCCTGTTCTTGCTGGCAGCCTCCCCCGCCTGAACTCGGCTATT
Rabbit scaffold_192088:9299-9440 - TAGTCTCGTCCGTGTCTCCTGCCCGCCCTCGCGTCCCGCTGCTGTCTCCAGCAGGCTGAG-TGCGTG-TCCCTT-CCGGCGTGCCCTGCCAGGCCTGACTTCTCCCTCTT-GTCCGCGCAGCCGCCCCCGCCCCAGCTCGGCTATG

mmu-mir-7034 (chr5:136211676-136211759 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr5:136211651-136211784 - ##################-------------------------------------------------------------------------------------*------#########################
GAGTGCAAGGAGTGGCAGGTGAGCCAGGGGTCCGGGAGGGATGGATGTGCTGGAGGTCCCATCTAGACCTTGACTGTCCTGACCTTGGCCTTCCTTCCCTACC-CTACAGGTGCTCATGTGCGGCTTCCCCTTCC
Rat chr12:22078054-22078179 + GAGTGCAAGGAGTGGCAGGTGAGCCCAGGGTCTGGAAGGGATGCATG----GGAGGTCCCAGCTCGGCCTGGACCGACCTGACCTTG-----CCTTCCCTACCCCTGCAGGTGCTCATGTGCGGCCTCCCCTTCC
Guinea pig Unknown ---------------------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown ---------------------------------------------------------------------------------------------------------------------------------------

mmu-mir-7035 (chr5:136581392-136581473 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr5:136581367-136581498 + -----------------------------------------------------------------------------------------------------------#########################
ttctttgtaccaagtggaGAGTCTGTGAGGGGCTGGGAGAGTGGCTCAGAAGAGAGTACCTGGCTCTGGGGAGGAAGGGGCAGACTTCTGAGCCGCTGTCCCTGCAGTGTGTGAACGAGTTGAACCAGTGGC
Rat chr12:21674038-21674168 - ttatgtGTACCAAGGAGAGAGTCTGTGAGGGGCTGGGAGAGTGGCTCAGAGGAGAATGCCTGCCTATGG-GAGGAAGAGGTGGACTTCTGAGCCTCTATCCTTGCAGTGTGTGAACGAGTTGAACCAGTGGC
Guinea pig Unknown ------------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_113317:7852-7878 + ---------------------------------------------------------------------------------------------------------AGTGTGTGTATGAGCTGAGCCAGTGGC

mmu-mir-7036 (chr5:137737852-137737916 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr5:137737827-137737941 - -------------------------------------------------------------**-----*------------*****------------#########################
CTAAAAGCCTGGAGGAAGCTGTTACCTTCCAGCGGGGTTCGGTGGGGAAGAGACTGCAGCA--TGCTG-TCCGTCCTCATC-----CGCTCCTCCCAGGGCCCGGAGTTTGTGCGCAAGCATA
Rat Unknown ---------------------------------------------------------------------------------------------------------------------------
Guinea pig Unknown CTAAAGGCCTGG-------TGTCCCCCTCCAGATTGGGTCGGATTGGGGGAGCCCACATTACTTGCTGCTCCGTCTTGATCATTTCCTCTCTACTCAGGGTCCTGAATTTGTGCGCAAACATA
Rabbit Unknown ---------------------------------------------------------------------------------------------------------------------------

mmu-mir-7037 (chr5:140243833-140243897 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr5:140243808-140243922 - ----------------------------------******************-------------------------------------*-------------------#########################
CACTAGACTAAGGAAGATTATACCCTCGGGAAGG------------------TGGCCACAGGAGATCATGGTGGCTCCTTACCACCTGT-CTCCTAATGTCACCTGCAGTTTCTTCCTGCGCCTCTGTTCAGAG
Rat chr12:15346584-15346717 + CACCAGAGTAAGGAAGATTATACCCGTAGAAAGGCAGATTGGATCTGGCCGCTGGCCACAGGAGATCCTGGAGGTTCCTCACCACCCCTCCTCCCAATGTCCCCTGCAGTTTCTTCCTGCGCCTCTGTTCAGAG
Guinea pig Unknown --------------------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown --------------------------------------------------------------------------------------------------------------------------------------

mmu-mir-7038 (chr5:140903293-140903363 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr5:140903268-140903388 + --*---------------------***-------------**------------------------------------------------------------#########################
GG-ACTGGTTCTGGGAGATGAGAA---GATGCGGTGTAGA--AGGAAGGGCTGCTGTGCTTGACAAGTCTGTCATTTTCACACTGCTCCTGCCTTCTTACAGAGATGGACAGAGACGTACGTGCGCT
Rat chr12:14683297-14683415 - GCGATGGGTTCTGAGAA--GAGAA---GATGCAGTGTAGA--AGGAAGGGCCGCTGTGCTTGATG-CTTTGTCGTTTTCACACTGCTGCTGCCTTCTTACAGAGATGGACAGAGACATATGTGCGCT
Guinea pig scaffold_281190:3889-4015 + GAAATAAGTTCTGAGAAGTGAAAAGTAGATTCACGGTAGAAGAGGAAGGGTCTCTGTATCTGACTTTTTTGTTGTGGTAATGCTGACCTTCCTTTTCCACAGAGGTGGACAGAGACATATGTGCGTT
Rabbit scaffold_191890:5734-5760 + ---------------------------------------------------------------------------------------------------CAGTGATGGA-AGAGACGTACTTGGGTT

mmu-mir-7039 (chr5:145657601-145657685 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr5:145657576-145657710 - ---------------------------------**----------******---------------*****------------------------------------*****-------*******---------#########################
AGCTTTGCATTGAGAACACAGTCACTCGTTAGA--GGGATGGAGA------GCATCGCGTGTTTGA-----GTCTTGTGACACTTCCATAATGTTTCCACGCCTGTT-----CTGCCCT-------CCCTTCCAGAACAGTGTATGAAGACTCAGGCCCT
Rat chr12:10022773-10022855 + G-----------------------------------------------------------------------TCTTGTGACACT-CCATAATGTTTCCACGCCTGCT-----CTGCCCTACCCTACCCCTTCCAGAACGGTATATGAAGACTCAGGCCCT
Guinea pig Unknown AACCAAGCACC-TGAACACTTTTGGTCATTACACTAGAATGGACACAGGTGGCA--GCTAGTTTCAAGTGTGTC-----------CCACGGC--TCCCATACCTGCTGTCTTCACCCCT-----G-CTCCTGCAGATCCGTGTATGAAGACCTGGGGCCT
Rabbit scaffold_209761:49133-49195 + -------------------------------------------------------------------------------------CCATGGCGCTCCATCGGCTCTG-----TGCCTCT-------GCCTTGCAGAACCGTGTACGAAGACTCGGGGCCT

mmu-mir-704 (chr6:47753589-47753657 -)

5p_tailed_mirtron (reclassify)

Species Coordinate Alignment
Mouse chr6:47753564-47753682 - --****---------------****************--------------############****########################*####################################################
TA----GTGTGTGGAAAGGGA----------------CTGTCCCTTGCACAGCTGGGAGCTAG----AGGATGTGGTCAGCTGCAAGGATC-TTCCTCAGACATGTGCTCTGCTCCTAGGGATTGTTGACTACATGATTGAGCA
Rat chr4:75937791-75937909 - CA----GTGTGTGGAAAGGGA----------------ATGTCCTTTGTACAGCTGGGAGCTGG----AGGATGTGGTCAGCTTCAAGGACC-TCCCTCAGACATGTGCTCTGCTCCTAGGAATTGTTGACTACATGGTTGAGCA
Guinea pig scaffold_281234:156775-156881 - CC---ACCATACAGAATGGTG----------------GTGCCTGCGGGGTAGGTGGCAG-----------------GTTGGCCCCAGGCCC-CTTCTCAGGCCTGCATTGTGCTCCCAGGCATCGTGGACTACATGATCGAGCA
Rabbit scaffold_207482:80474-80617 + CTGCCACCGTGGGGAAGGGCGGCTCCCTGCCAGGCCACTGCCCCTGGAAGGGCTGGGGGCAGGGGGCAGGGGGCAGGCAGTTCTGAGGTCCCCTTCTCAGAGGCGTGCTTTGTTCCCAGGGATCGTTGACTACATGATCGAGCA

mmu-mir-7040 (chr6:82999705-82999767 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr6:82999680-82999792 + ----------------------------------------------------------------------------------------#########################
TGTGATCTGCCTCGAGAGAAGCCAGTCTCCCATACGGAGGGAGATGGAGGCGCCCTCAGTGGTAACCGCCACCCTCTCTCTCACGTAGCTGCTTCAGATCTGCTGCTGCACTC
Rat chr4:117260653-117260742 + TGTGACCCA------------CCAGTCTCCCA-------GGAGCTGGAAGCACCCTCCATGGTAACCATCAC----TCTCTCACATAGCTGCTTCGGATCTGCTGCTGCACTC
Guinea pig Unknown -----------------------------------------------------------------------------------------------------------------
Rabbit Unknown -----------------------------------------------------------------------------------------------------------------

mmu-mir-7041 (chr6:94556358-94556409 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr6:94556333-94556434 - -----------------------------------------------------------------------------#########################
AGCTGGACTCATCTTCCAATAGTGCCTCTGAGAGGGAATGGAGACTCAGTTGACCTCTGGTTCTCTTCTTCCCTCAGCACACAGTGGCTCTGCTGTATGTAG
Rat chr4:128920256-128920349 - AACAGGACTCGTCTTCCGGT--------TGGAAAGGAGTGGAAACTTAGTTGACCTCTGCTTCTCTTCTTCACTCAGCACACAGTGGCTCTGCAGTGTGCAG
Guinea pig scaffold_292798:207276-207308 + ---------------------------------------------------------------------TCCTTCAGAACACAGTGGCCCTGTTGTATGTAG
Rabbit scaffold_211852:107625-107667 + -----------------------------------------------------------GCTCTCTGGCTCTTTCAGAACACAGCGGCGCGGTCGTGTGCAC

mmu-mir-7042 (chr6:113657202-113657259 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr6:113657177-113657284 + ----------------------****-------------------**************************------------------------------------------#########################
ATTCTATTGTACAGTTTAGAAG----CAAAGAATTAGAGACAGCA--------------------------GAAGGGCCACTAATTAGCTGTTGTCCCTTTGTTTTCTCTCAGGTGTTTGAGAGGCAGCTGAAGCTGG
Rat chr4:149613836-149613966 + TTTCTATTGTACAGTTTAGAAG----CAAAGAATTAGAGACAGCAGAAGTACCTGGACATAACAGAC---AGAAGAGTCACTAATCAGCTGCTGTCACTTTGTTTTCTCTCAGGTGTTTGAGAGGCAGTTGCAGCTGG
Guinea pig scaffold_217872:424-539 - GTTCCACTGTGTCATTTTTGGGTGTACAGAGAATTGGACACAGTG-AGGTTCC--AGTATGACAGGCTTTTGAAGTGTCCCCAACCAGATGGTGTCCCTTTGTCTTCTTCCAGGTGTTT-------------------
Rabbit Unknown ------------------------------------------------------------------------------------------------------------------------------------------

mmu-mir-7043 (chr6:116595996-116596065 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr6:116595971-116596090 - ------------------***----------------------**---------------******************----*------------------------------------#########################
AGCCCTTGGGCTCCTCAC---TTGTGTCCTGCCTGTGAAAGCA--GAGAGGCATTTTTCT------------------CTGT-CGCAGCTACTTGAGTACTGTGCCTCTCTGTTTTCAGAAAGGAAGCTTCACCCCAGGACAGC
Rat chr4:152996361-152996483 - TGCCTCTGGGATCCTCACCCATGGTGTCCTGCCTGGTAAAGCA--GAGCGGCTTTTTTCT------------------CTGT-CCCAGCCACTTGAGCATTGTGCTTCTCTGTTTTCAGAAAGGACGCTTCACCCCAGGACAGC
Guinea pig scaffold_275173:6282-6414 - CACCCTGTG----GTCAC---CTGTGTCCTGCCC---CAGGCATGGGGGGGTACTCCTCCTTCAGCTGAGTTGCCTGTTTGTGCCTGGTCACCTGAACATTGCAATGGTCC-CTTTCAGGAAGGAGTCCTCTGCTCAGGACTGC
Rabbit Unknown ------------------------------------------------------------------------------------------------------------------------------------------------

mmu-mir-7044 (chr6:118035210-118035281 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr6:118035185-118035306 + ----------------------------------------------------------------------############****########################################
AAATAGACCTAGACGTGAGATGGGGCTCTTGTGTGGTGGTGGTGGCGGCCTCACTGTCAATCCACTGCAGTACCTGATGCAG----CCCCGACCCTCACAGGAGAATGGCACAGTGAAGAAAGCCA
Rat chr4:154383958-154384080 + GTATAGCTCTGGACTTGAGATGGGGCTCTTGTGTGGTGGCGGTGGTGGCCT---TGTCAATCTTCTCCAGCACCTGATGCAGCCAGCCCTGACCCTCACAGGAGAACGGCACAGTGAAGAAAGCCA
Guinea pig Unknown ------------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown ------------------------------------------------------------------------------------------------------------------------------

mmu-mir-7045 (chr6:125047042-125047104 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr6:125047017-125047129 + -----------------------------------------------------------------------------**************************************************-----------#########################
GCTAGGGTGGTAGGGCAGGGGGGCGGAAAGAGCGGGTGGGGGAGGGGGACTGCGCGTCACTCACTGTTCTCCCCCCT--------------------------------------------------CCCCCGCACAGTGACTCGGGCCAGTGCAGAGGGCCC
Rat chr4:161218770-161218898 + GCTAGGGTGGTGGGGCAGGGGGGCGGAAAGAGCGGGTGGGGGA----------------------------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCGCACAGTGACTCGGGCCAGTGTAGAGGGCCC
Guinea pig Unknown -------------------------------------------------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown -------------------------------------------------------------------------------------------------------------------------------------------------------------------

mmu-mir-7046 (chr7:25755029-25755094 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr7:25755004-25755119 - ##############---------------------**----------*-------------------------------------********---------#########################
CTTCTGGGTCCTGGGTGAGTACAGGGTCTGTGTAG--GGTGAGGCTG-GGAGCCAGGCGAAAGAGCACAGCCTGAACCACCCATC--------CCCCTACAGGAGCCACGCTGGTACTCATAGGCTC
Rat chr1:80272204-80272326 - CTTCTGGGTCCTGGGTGAGTACAGGGTCTGTGTAG--GGAGAGGCTG-GGAGCCAGGTGAGCGAGCCTGTCCTGAACCACCTGTCCTCCTACTTCCT-ACAGGAGCCACCCTGGTACTTATAGGCTC
Guinea pig Unknown -------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_62882:191-308 - CTTCTGGGTGCTGGGTGAGTGCCAGGCTGGGGTGGCGGGGGTGGCGGCGGGGCCGGGCCAGGGGACCCGCCCTGAGCCGCCTGTT--------TCCC-TCAGGGGCCACCCTGGTGGTCATCGGTTC

mmu-mir-7047 (chr7:25772623-25772686 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr7:25772598-25772711 - -----------------------------------------------------------------------------------------#########################
GGgtGGttGgTTtGGggTGGtTCCCTGGTCTGAGGGAGGAGGGCTGGGTCTGAAGAGTTGGTTCTCACCCTCACCCTTCCTCCTTCCAGGGAGCAATTGTGGCTGTGACTGGCG
Rat Unknown GGGAGGAAACCTGGGCCTGGATGCCTGGTCTGAGGGAGGAGGGC--------------------TCACCCTCACCCTTCCTGCTTCCAGGGAGCAATTGTGGCTGTGACTGGCG
Guinea pig Unknown ------------------------------------------------------------------------------------------------------------------
Rabbit Unknown ------------------------------------------------------------------------------------------------------------------

mmu-mir-7048 (chr7:26002687-26002744 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr7:26002662-26002769 - ---------------------------------------------------------------------*-***-------------#########################
ATCCCGTGGCTGGGCACTCTTCCTAGGATGCGGGGCTGAGAGGTGAGGAAGCCGAGATAGCTTCTTCCA-T---TCTCTTTCCCCAGTGTCCCCTGAGCGATACAGCTATGG
Rat Unknown ----------------------------------------------------------------------------------------------------------------
Guinea pig Unknown ----------------------------------------------------------------------------------------------------------------
Rabbit scaffold_201459:69704-69799 + ----------TGGGCAC------TGGGGGCCGGGCCTGGGAGGGCGGGAGGCTGCGAATGCTTCTTCCCATTCCTCTTTTCCTCCAGTGTCTCCGGAGCGCTACAGCTACGG

mmu-mir-7049 (chr7:29345944-29346003 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr7:29345919-29346028 - --------*******-----------------------------****---------------*-----------*-************---*---------*---------#########################
TCAGCCCT-------GCTGCTCAGCGGAGCCCGTGTGTCTGAAG----GCAGTCAGGTAGGCG-GCACCTCTGAC-C------------TGC-AGCCCCTGT-CTGCCTCAGGTGAAGCTGTCCGACTTCGGGTTTT
Rat chr1:83672835-83672943 - --AGCCCT-------GCGGCTCAGTGGAGCCCGCGTGTCTGAAG----GCAGTCAGGTAGGTGGGCTCCTCTGAC-C------------TGC-AGCCCCTGT-CTGCCTCAGGTGAAGCTGTCCGACTTCGGGTTTT
Guinea pig scaffold_272718:1216-1277 + CC--------------------------------------------------------------ACACCTCTGACAC------------TGC-CCGCTCTGCCCTGTCCCAGGTAAAGCTGTCGGACTTCGGTTTCT
Rabbit scaffold_206500:136463-136596 + --AGCGCTGACCGGGGCTGCTCGATGGGGCCTGCACGTGTGAGGTCCAGGAATCGGGTGGGTGGACAGCTCTGCC-CACGGCACCCCCATGCCGGCCTCTGCCCCGCCGCAGGTGAAGCTGTCGGACTTCGGGTTCT

mmu-mir-7050 (chr7:31825277-31825336 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr7:31825252-31825361 - ------------------------------*---------*------------****----------------------------------#########################
TTCAGTGGGTCTGGCGAGGTGGGACAGAAG-ACAGGAGAA-GGGGGTGAGAGA----CTCCCTCCTGAACTCTCAGCCTTTATCTCCCCAGGGCAGACACCAAAAAAGCCCACATC
Rat chr1:86083741-86083854 - TTCAGAGTGTCAGGCATGGTAGGACAGAAG-ACATGAGAA-GCAGGTGAGAGACTCACTCCTTCCTGACCACTCAGCCTTGTTTTCTCCAGGGCAGACACCAGAAAAACCCAGATC
Guinea pig Unknown --------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_165995:6265-6369 - TTCAGAAGGAAGGACTGGAT-----GGGAGTAC-TGGGGAGAGGGGGCCGACA----CGCCCTCCTGACCTCTCCCTCTT-CACTCTCCAGGTCAGAAGTTGGAGGAGACCACATA

mmu-mir-7051 (chr7:50712867-50712939 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr7:50712842-50712964 + --------------------------------------------------------------------------------------------------#########################
GCAACAGATATGGCTTTAAACATGCACTACTCACCAGGAGGAAGTTGGGTCAGGTAAGGGCTTCGCAGCCCCCCTGAGCCACTGATTCCTGTGTGCAGAAAGCCAAGAAGAAGAAGATTGAAG
Rat chr1:93833978-93834099 + GCAACAGGCATGGCTTCAAACACGAACCACTCACCAGGAGGAGGTTGGGTCAGGCAAGGGCTTTGCAGCTC-CCTGAGCCACTGATTGCTGTGTGCAGAAAGCCAAGAAGAAGAAGATTGAAG
Guinea pig Unknown ---------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown ---------------------------------------------------------------------------------------------------------------------------

mmu-mir-7052 (chr7:51725717-51725781 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr7:51725692-51725806 + ------------------------------------------------------------------------------------------#########################
CAAAGGCCAGGCTCTGGGCCTCTCCTATCATGTGGGAAGGTGGAGGCCTTTCCAGGATTTCAAACCTTGGCTCTGCCCCCTCCTTCCCAGGCTAGCCCCAGATTCCCGGCTGAAC
Rat chr1:94947763-94947877 + CAAAGGCTAGGCTATGGGCCTCTCCTATTATGTGGGAAGGTGGAGGCCTTTCCAGGATTTCAAACCTTGGCTCTGCCCCCTCACCCCCAGGCTAGCCCCAGATTCCCGGCTGAAC
Guinea pig Unknown -------------------------------------------------------------------------------------------------------------------
Rabbit Unknown -------------------------------------------------------------------------------------------------------------------

mmu-mir-7053 (chr7:51793476-51793548 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr7:51793451-51793573 - -----***************----------------------****-**************************-------------------******---------------------------------------***------------#########################
TGGGG---------------AGGCTGCAGCAGGTCCTGGGGG----A--------------------------GCTGGGGAAAGGCAGGCTA------CTGGGGAGCTGGGTAGTTCGGAAGCCCAGCCTCCTGTGT---CTCCTTCCCCAGCCTTAAACCAGATGAGTTCATCAAG
Rat Unknown TGGAGAGGCCGGCCTAGGGGAGGCTGAAGCAGGTCCTGGGGGAGGTTTGCAGAGAGAGGTAGGCCTGGGGGAAGCTGGGGAAAGACAGGCCA------TGGGGGATCTAGGTAGTTCAGAAGC---GCCTCCTGTGTTTCCTCCTTCCCCAGCCTTAAACCAGATGAGTTCATCAAG
Guinea pig Unknown GGGGT-----------------ACTGCGCCGGGCTTTGGGGC----T--------------------------GGCAGGGAA---CAGGGTGGAGAGGCTG-GGGCCCAGGAGGGCGGGTAACGCAG--TGCTGTA----CTGTCTCCCCAGCCTGGACGCAGACCAGTTCATCAGG
Rabbit Unknown ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

mmu-mir-7054 (chr7:52267796-52267857 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr7:52267771-52267882 - -------------*--------------------------------------------------------------------------#########################
GCAGATTGGTGGG-TCCTGAGAGGCTGGAACTAGGAAGGTGGTTGGGCTGAGTACTCACAGAACAGAGTCCAACTTGGCCCCTTCCAGGTATTGGACACAGCTGCAGATAGCT
Rat chr1:95484970-95485081 - GCAGATGGGTGGGTTCCTGAGAGACTGGAACTCGGAAGGTTGTCAGTGTGAGTGCTCACAGAACAGAGCCC-ACTTGGCCCCTTCCAGGTACTGGACACAGCTGCAGATAGTT
Guinea pig scaffold_103870:85-122 + ---------------------------------------------------------------------------TGGTCTATTGCAGGTGCTGGACCTGGCTGCTGACAGCT
Rabbit scaffold_189804:7460-7538 + GG--CCTGGTGCG-TCCTGAC------------------------------GTGTGCAGTGCAGTGAGGGG-TCCCGGCCTGTTGCAGGTGCTGGACGTGGCCGCGGACAGCC

mmu-mir-7055 (chr7:52428673-52428731 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr7:52428648-52428756 + ------------------------------------------------------------------------------------#########################
CAGGGGATGGGGTGGGTGTAGCACTTCAGTGGGTTATCTGAGTTGGGACTTGCTATGATGTTTGCTACTTTGATACCCCACCAGGGTTTAACGTGAACCACTTGGACAT
Rat Unknown CAGGGGTTGGGGTG-GTGTAGCAATTCAATGGGTTATCTGAGTTGGGATTTGGTATGACATCTGCTACCTTGATACCTCACCAGGGTTTAACGTGAACCACTTGGACAT
Guinea pig Unknown -------------------------------------------------------------------------------------------------------------
Rabbit Unknown -------------------------------------------------------------------------------------------------------------

mmu-mir-7056 (chr7:54338536-54338594 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr7:54338511-54338619 - -----------------------------------*------------**************-----------------------------*******--------#########################
GTGATCTCAGAGGAAATGTGGGTGCTGTGGAGGAG-GACAGAGAGGTT--------------GGGCCCAACTCACAGCCTCACCTGTCTCC-------CACCACAGATCCTCACAGCAGGGTACGTCTGAC
Rat chr1:97634889-97634981 - ----------AAGAAATGTGGGTGCTGTGGAGGAGG-------AGGTT--------------GGGCCCAGCTCACACCCTCACCTGTCTCC-------CACCACAGATCCTCACAGCAGGGTACGTCTGAC
Guinea pig Unknown G--ATCTCA--AGAAATGTAGGTACTCTAGAG---TGACATAGAAGTGGGGACTGCATGAGAGGGCCTAGCTCCCAGCCTCACCTGTCTCC-------CCCAAC-CATCCCCATGGCAGAGTGTGCCTGAT
Rabbit scaffold_176634:1060-1162 - G--GTCCCAGAAGAGGGGTGGG-GCCCTGGAG---T-------GGGCC--------------GTGCCCAGGTC-CTGCCTCACCTGGCTCCCTCCCCCCACCCCAGACCCTCACAGCAGAGTGTGTCTGAG

mmu-mir-7057 (chr7:73526553-73526610 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr7:73526528-73526635 - --------------------------------------------------------*---------------------------#########**################
ATGACAATGGAGAATATCTTAAAGGGCCTGCAGGAGAGGACTCAAGTTGGAAAACG-TTCTAATTTGATGTCTTTCTCCACCAGGATGAGCGT--GTGTCTGCAGCGACAT
Rat chr1:120836418-120836525 - ATGACAGTGGGGAACACCTACAAGGGCTTGCAAGAGAGGAC--GAGTCTGAAAGCC-TTCTAACTCGATGTCTTTCTCCACCAGGACGAGCGTGTGTGTCTGCGGCACCAT
Guinea pig scaffold_87478:667-754 - t----------------------GGGATTGCAAGAAAGGACCCAAGTGAAAAAGTTTTTCTGATGTTATGTTTTTCACCACAGGAATGAAAGA-AGTTTCTGGTCAGACAT
Rabbit Unknown ---------------------------------------------------------------------------------------------------------------

mmu-mir-7058 (chr7:133511485-133511559 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr7:133511460-133511584 - #################************########-------------------------**-----------********--------------------------------*-------#########################
AAGACGACTATCCCAAC------------GGCTACCTGTGAGTGGGTAGAGGGGAGGTGACC--GTGGAAGTTGT--------GTGCCCTTTATCAACTTCTCGTTCCTTCCTTT-CTTCCAGAGTGGTGCTGCCTGACAGTAGTCCT
Rat chr1:185453631-185453748 - AAGATGACTATCCTGAG------------GGCTACCTGTGAGTGGGGAGGTGGGAGGTGGCC--GTGGAAGTTGG--------GTACCCTTTATCAAC-------TCATTCCTTC-CTTCCAGAGTGGTGCTGCCTGACAGTAGTCCT
Guinea pig scaffold_293674:37025-37156 + AGGAAGACTACCCCAACGAGGGCTACGGCGGCTATGTGTGAGTGGCCAGGTGGGAGGC---------------AGGGACTGGGCCCAGCATTCTCGCTCACCCTCTTGCTCCTTC-CCTCCAGGGAGGTGCTTCCCGACAGCACCCCA
Rabbit scaffold_166039:3448-3586 + AGGAGGACTCTCACAATGAG---------GGCTACCTGTGAGTGGCAAGGGGGCAGGTGGGCAGGTGGGTGCTGGGGCCCCGGGCGAGCTTCCTCACCCCCTCCCCCATTGGTTCACTCTCAGGGAGGTGCTTCCCGATGACAGCCCG

mmu-mir-7059 (chr7:133722988-133723046 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr7:133722963-133723071 - ---------------------------------*---**------------------------**********-*---------------***--------#########################
AGCTGATGGAGTTGAGGCTGTAAACAAACCACC-GGG--GACTGCGGCTTTCAGTTAAAGGTC----------A-CTGTTTGCTGTTTGT---CCTCCCAGGAGTGGTTTTGGCCAGCATCTCCTC
Rat chr1:185720638-185720746 - AGAGGATGGAGATGAGGCTGTGAACAAACCACT-AGG--GACTGCGGCTTTCAGTTAAAGGTC----------A-CTGTATGCTGTTTGT---CCTCCCAGGAGTGGTTTTGGCCAGCATCTCATC
Guinea pig scaffold_265138:936-1046 - GGCCAATGCAGATAAGACCATGGTCAAAGC-CTGGAGGAGATGGGGACTATTGGAGAAAGGCC----------A-CTCCGTGCCTGTCCT---CCTCCCAGGTGTGGTCCTGGCCAGCATCTCATC
Rabbit scaffold_153322:8769-8889 + AACACACACAGAGCAGGCCATGGTCCATCATCTCAGGG-AAC-CGGGCTGTCCAGGAAAGGCTCGGCTCGGCCACCT---CCCTGTTTGTCCTCCTCCCAGGTGTGGTCTTGGCCAGCATCTCTTC

mmu-mir-7060 (chr7:134632765-134632901 +)

mirtron (novel)

Species Coordinate Alignment
Mouse chr7:134632740-134632926 + #########################-------------------------------------------------------------------------****************-------------------------*******-------------------------*--------------#########################
GGAGGCCTGGGCAGCCCCACATTCAGTGAGTGCTGGGTAGAATGGGAAATGAGGGATGGAAGCTGCAACCGAGGGGCTATAGGCTCAAGCTGGGCTTG----------------TGATGCTCTCTGTAGAGCATCCTCC-------TCTCGGCCCCTGTCACTTTCTACTC-TACCTTCTACTCAGACTCCAGCGCCGTCTTTGCCCAGAA
Rat chr1:186775031-186775224 + GGAGGCCTGGGCAGCCCCACATTCAGTGAGTGCTGGGTAGAATGGGAAATGAGGAGTGGGAGCTGTGACAGTGGGGCTATGGGCTCAAGCTGGGCCTG----------------TGATGCTCTCTGTAGAGTGCCCCCCCCATCCGCCCCAGCCCCTGTCACTTTCTACTT-TACCTTCTACTCAGACTCCAGCGCCGTCTTTGCCCAGAA
Guinea pig scaffold_280757:23353-23534 + GGAGGCCTAGGCAGCCCCACATTCAGTGAGTG-TGGAAAGAT---------TGAGGTGGGGGCTGCAGCACTGGGGTCCTATGCTTAGGCACGGCCTGGGAGGAAGCCTGCACATGGGGCCCTCTGT----------------T--CCTTGGCCCCTATCATTCTCTGCTC-TTCCCTCTGCCCAGACTCCAGCGCTGTCTTTGCCCAAAA
Rabbit scaffold_201386:39933-40095 - GGAGGCCTGGGCAGCCCCACATTCAGTGAGTGCTGGGGAGGGCGG---TCGGGGGGTGGGGGCTGGGGCAGGGGG-TGCTGCGGACCGGCAGGCCCCGG--GGAGG------------------------------------------CCGGGCCCTGGCACTCTCTCCTTTTGCCCTCTGCCCAGACTCCGGCGCCGTGTTTGCCCAGAA

mmu-mir-7061 (chr7:138051782-138051849 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr7:138051757-138051874 + ---------------------------------------------------------------------------------------------#########################
GGTAACATTATATTGCCAAGGTACAGAATTTATGGAAATAGGAGGTGATTTTGAGAGAAAGTTGACTGAAATATCCCTTTTATTTCCTTTTAGGCTGATAGCCCTGAAGAGATGCACA
Rat chr1:190233195-190233311 + GGTGACATTATATTGCCAAGGTAGAGACTTTATGGAAATAGAAGATGATTTTGAGAGAAAGTTGACTGTAATATCTCTTTTATTTCCC-TTAGGCTGATAGCCCTGAGGAGATGCACA
Guinea pig Unknown ----------------------------------------------------------------------------------------------------------------------
Rabbit Unknown ----------------------------------------------------------------------------------------------------------------------

mmu-mir-7062 (chr7:147172708-147172773 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr7:147172683-147172798 - #######-------------------------------------------------------------*--------*---------------#########################
GGGCCAGGTGAGGCAGACATGAGCATAGGATGGAGGCCAGCTTGTGGAGTGTCTATGACCTAAACCAG-ACTAACTT-CTCCTGGCCCCACAGGTGCTCGGGTAGCAGCCGACTCCTG
Rat chr1:199787259-199787369 - GGGCCAGGTGAGGCAGACATAGGAGGGGG-----GGGCAGCTTGTGGAATGTCTGTGACCTAAAGCAG-ACTAACTT-CTCCTGGTCCCATAGGTGCCCGGGCAGCATCCGACTCCTG
Guinea pig scaffold_273181:10080-10192 + GGGTCAGGTGAGGCAGACATAAGCATGGGACATA---TGGCCAGTTGTTGGCCATGGGCCTCAGCTTG-GCTAATAC-CTTCTGGCCCAATAGGTGCATGGCCTGCCACAGATGCCTG
Rabbit scaffold_118343:967-1072 + GGGCCAGGTGAGGTGGGCACGAACGTTGG-------CCGGCCTGCTGG-----TGTAGCCTCGGCCGGGGCTGACCTGCTCCCGGCCCTGCAGGTGCACGGGCAGCCCTGGACACCTG

mmu-mir-7063 (chr7:148806600-148806690 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr7:148806575-148806715 + ----------------------**************---*--------------------------------------------**------------------*******-----------------------******************------#########################
CATTGTGTCCTCCTCAAGGAGG--------------TGG-TCCCCATGAGAGGTGCAGGCTGAGCACAAGGCAGCACATGGGAC--AGATGAGATAGTGTGACT-------CCCCATTTGTGCTCTCTGCCCCT------------------CTTAAGCCCTCTGATCCAGTTCAACCTGCTC
Rat chr1:201803142-201803293 + CAGTGTGTCC---TCAAGGAGGCACTGCTTTACATACGG-TCCCCGTGAGAGGTGCAGGCTGAGCGCAAGGCAGCACATGGGAC--AGATGAGATAGTGTGACT-------CCCCATCTGTGCTCTCTGCCCCT------------------CTTAAGCCCTCTGATCCAGTTCAACCTGCTC
Guinea pig scaffold_251760:39738-39863 + GGAAGTGTG---------GAGA--------------TGTGGCCCAATGAG--------------------------CCTGGAACCAGGAT--------ATGACTTTGTGGAGCCAGCCTGTGCTCTGGGGCTCTGAGTGCCATCCTTCCTGCCTGCAGCCCGCTGATCCAGTTCAACCTGCTG
Rabbit Unknown ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

mmu-mir-7064 (chr7:150756576-150756664 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr7:150756551-150756689 - -------------------***---------**-----*-----------------------*-----------------------*--*------------*---------------------#########################
TCTGAAGATTTTGAGCTGG---TGCAGTGAG--GTTCA-GAGGCATAAAGGTCATTTGCTTC-AGTAGTAAAGGCCTGGGCAGGTT-TG-GAATGGTCAGCA-GGGCCCTTTATGTCTCTCTAGGGTCGTCCCGGATGGCACATAGAGT
Rat chr1:203949253-203949396 - TGTGAAGATTTTGAGCTGATGCTGCAGTGAGAGGTTCG-GAGGCATAAAGGTCATTTGCTTC-AGTAATAAAGGCCTCGGCAGGCT-TG-GAATGGTCAGCA-GGGTCCTTTATGTGTCTCTAGGGTCGTCCAGGATGGCACATAGAGT
Guinea pig scaffold_249846:63250-63396 + ATGGGTGGATTTGAGTTCCTATTGCCATGAC--ATTCAGGAGGCTTAGGGCCTATTAACTTGGAGCAGTGAAGGTCTAAGTGGGTAGTGTGGTTGGTCAGCAAGAGCCCTTCATCCTTCCCCAGGGCCGCCCAGGATGGCACATCGAGT
Rabbit Unknown -----------------------------------------------------------------------------------------------------------------------------------------------------

mmu-mir-7065 (chr8:13136072-13136132 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr8:13136047-13136157 + -------------------------**---------------------**------------------------------**----------#########################
AGTAGTACTCAAGGAGATTTTTGTC--CATGGAGTGTAGCAGGTAAAC--CAGGAATCTCTCTCAGGTCTTGGTTTTCCT--GTTTGCACAGGTAAAGATGTCTTTGAAGCGTTTTA
Rat chr16:81253572-81253676 - AATAGTAC-CGAGGAGCCCTTTGAC--CATGGAGTATAGCATGCAAAC--CAGGCAT----CTCAGGTCTTG-TTTTCCT--GTTTGCACAGGTAAAGATGTCTTTGAAGCATTTTA
Guinea pig Unknown --------------------TTGTTCACATGT--------ATGCAGCTCACCGGCAT----CTAATGCCTTG-TTCCCCTTGGCTCTGCCAGGTAAAGATGTGTTTGAAGCGTTTTA
Rabbit Unknown ---------------------------------------------------------------------------------------------------------------------

mmu-mir-7066 (chr8:72626423-72626485 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr8:72626398-72626510 - -*********-------------------------**********--------*------------------------------------------------------#########################
C---------AGGGGATGGTGAGAAAGACCTTGAC----------CCTGTGGG-TTGGGAAATGAGTAGAGGCTGACCTCTGACCTCTACCCATTGCCTGCCTCCCAGACATTGATGACTGCTTATGCAGCCC
Rat chr16:19803995-19804126 + CGTCCAGGGGACGGGATGGTTAGAAGAACCTTGACCCATCTTCTACCTGTGGG-TTGGGATCTGAGTAGAGACTGACCTCTGACCTCTGCCCATTGCCTGCTCCCCAGACATTGATGACTGCTTGTGCAGCCC
Guinea pig scaffold_290575:42618-42704 + C--------------------------------------------CCTGTGGGGGCTGGAGCCAAGGGGAGGCTGCCCTTTCACTTGTCCCCTCTATC--CCCACCAGACATCGATGACTGCGTCTGCAGCCC
Rabbit scaffold_165697:7677-7733 + C----------------------------------------------------------------------------TTCTGACTCGGCCCCTCCTTCTCCACGCCAGACATTGACGACTGCATGTGCAGCCC

mmu-mir-7067 (chr8:73419407-73419469 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr8:73419382-73419494 - ----------------------------------------------------------***********************---------------------****---------#########################
GTGACCCCGAGTGTGGGGCTGACGCAGGGCTGCAGGGGGTGGTTGCACACGGACAGTC-----------------------TCTGGACACTGATTGCTTCCC----TCCCCACAGGACTCCAAGATCAAATTCCCACTGC
Rat chr16:19043853-19043965 + GTGAACCTGAGTGTGGGGCTGACGCAGGGCTGCAGGGGGTGGTTGCGCATGGACAGTC-----------------------CCTGGACATGCATCTCCTCCC----TCCCCACAGGACTCCAAGATCAAGTTCCCATTGC
Guinea pig scaffold_204852:1423-1547 - GTGCCAC------------TGACGCAGGGTGGAGGGAG---GGGGGACATGGGCAGCCATGCCTGGGTGAGCCCCAGAGCACTTGGCAAGGGCCCTCACCTCTGTACCCCCACAGGACTCCAAGATCAAGTTCCCGCTGC
Rabbit Unknown --------------------------------------------------------------------------------------------------------------------------------------------

mmu-mir-7068 (chr8:74993915-74993988 -)

mirtron (novel)

Species Coordinate Alignment
Mouse chr8:74993890-74994013 - #########################--------------------------------------------------------------------------#########################
CACCTGCACAAAGGATGCCATCTCGGTGAGGCTCAGTATGGGGTGGGGGTGTCGTCGCCTGCCCGACTGACCACCCACTCACCCTGGACTGACTCTCAGGCTGGGAAGAACTGGATGTTCAGCA
Rat chr16:17790397-17790520 + CACCTGCACAAAGGATGCCATCTCGGTGAGGCTCAGTGTGGGGTGGGGGTGTTGTCACCTGCCTGACTGACCACCCACTCACCCTGGCGTGACTCTCAGGCTGGGAAGAACTGGATGTTCAGCA
Guinea pig Unknown ----------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown ----------------------------------------------------------------------------------------------------------------------------

mmu-mir-7069 (chr8:87391846-87391907 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr8:87391821-87391932 + --------------*------------------------**-----------------------------------********--------------#########################
AGCAGTCGAGCCAG-CACAAGCAGGCAGTGTTTGGGGGC--CTGGGAGGGTGACACTGAGGTCATCAGCCTGCCCT--------GCCAACCCCTACAGGAATCACGCAGTTGCGCTTCAAACC
Rat chr19:24948816-24948928 - AGCAGTCAAGCCAA-TACAGGCAGGCAGTGTTTGGGGGG--CTGGGAGAGTGACTCTGAGGTCATCAGCCTGTCTTGG-------CCAACCCCTACAGGAATCACACAGCTGCGCTTCAAGCC
Guinea pig scaffold_286081:113313-113415 - AGTGGCCTGCTCCGTTATG-------TCTGTTTGGCGGCCGTTGGGAGGGCAGGGCTCGGCT-------------CGGTCACCTCCTGGGTCCCACAGGAATCACCCAGCTGCGTTTCAAGCC
Rabbit Unknown ---------------------------------------------------------------------------------------------------------------------------

mmu-mir-7070 (chr8:87585985-87586070 +)

mirtron (known)

Species Coordinate Alignment
Mouse chr8:87585960-87586095 + #########################--------------------------------------------------------------------------------------#########################
CATTGATGCGGTGTTGCTGCTCCAGGTGAGGGGAGCTGAGGCAGGAGGCCAAGCAGGCTAGGAGGTGAGGAACCTCAAGGATAACTAACTCCAGGCTCTCCTTCCCTCCAGGGTGGGGCACTGTGTCTGTCAGGCT
Rat chr19:24751422-24751549 - CATTGATGCAGTGTTGCTACTCCAGGTGAGGGGAGCTGAGGTGGGAGGTCAAGAAGGGCAAGAGGTGAGAAACCTCAACGATA----ACTCCAGGCTCTCCT----TCCAGGGTGGGACACTGTGTTTGTCAGGCT
Guinea pig Unknown ----------------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_33132:423-453 + C---------------------------------------------------------------------------------------------------------CCCAGGGCGGGACTTTTTCCCTGTAGGGCT

mmu-mir-7071 (chr8:90662109-90662173 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr8:90662084-90662198 + -------**************------------------------------------------------------------*---------------*****--------#########################
gcggcgg--------------gcggccgggggcccgggggcccgggAGCGAGGTGCTGCAGCGCGCGTGCTCACTACGCGA-CTCTGACGTCTCGGT-----TCCCGCAGCTCCAGCACCCGAGCGCCGAGGTCC
Rat chr19:20241949-20242076 - GTGGCTTgcggcgggcggcgggcggccggcggccgggTAG-CGACGAGAGAGGTGCTGCAACGCGCGTGCTCACTACGCGA-CTCTGACGTCTTGGT-----TCCCACAGCTCCAGCACCCGAGCGCCGAGGTCC
Guinea pig Unknown ---------------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_136509:21464-21571 - ggggcgggcg-cgggc-----------ggccccccgcggccccgggg---------------gcgcgTGCGCACTGGGCCACCTCTAACCTCCTCGTCCGCGTCCCACAGCTCCAGCACCCGAGCGCCGAGGTCC

mmu-mir-7072 (chr8:97028946-97029005 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr8:97028921-97029030 + ----------*****---------------------****-----------**********------***********-------------------------------------#########################
TGGAGAATAG-----GTTCTTGGACATTGAAATGGG----AGGGGAGACAA----------GAGGCA-----------AGGCACCCTACTGAGCCTAGCTTCTCTTCTTCCCCAGCCTCAGTCACAACAATATCTCTCAG
Rat Unknown --------------------------------------------------------------------------------------------------------------------------------------------
Guinea pig scaffold_281271:34369-34503 - TGCAGAATGGAGTCAGTGCTTAGACACAGAGGCCTCGCTCTGGGGAGATGACAGCTGGAAGGAAGTAATGGGTCTCAGGAGCATCATCCTGGGCCT-----CCTCTCTCTCCTAGTCTAAGTCACAACAGCATCTCTCAG
Rabbit Unknown --------------------------------------------------------------------------------------------------------------------------------------------

mmu-mir-7073 (chr8:98277051-98277114 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr8:98277026-98277139 - --------------------------------********-------------------------------------------**--------------#########################
GTTAAAACCATATTAGTCTTTCTAGCTTTCTG--------GGGGAATTGAAAGACTATGACTTAACAATTAACTGATAGCCTT--TTCCTCCCCAACAGCCGACTTGTCTCAGGTGTGGCCAGA
Rat chr19:9764050-9764159 + GTTAGAACCATGTTAGTCTCTCTGGCTTTCTG--------GGGGAATTGAAAGAT----TTAAATATGTATACTGATAGCCTT--TTCCTCCCCAATAGCCGACTTGTCTCAGGTGTGGCCAGA
Guinea pig scaffold_268799:14872-14987 - GCTAGAACTTTAAAGGTCTCTTTGGCTATGTG----TTACGGGGCTGTTGAAGA--AGTGCTTTCATGCCTACTGATTGCTGT--TTTGTCTCTAATAGCGGACTTGTCTCAGGTGTGGCCAGA
Rabbit scaffold_169365:717-827 - GTTA-----------GTCTTTCTGGTCTTCTGTACTTTATGGGGAAGTGGAGGA--AGGGCATAAAAGCCTACTGATTGCATTTCTTTTTTTCCAACAGCGGACTTGTCTCAGGTATGGCCTGA

mmu-mir-7074 (chr8:108475537-108475599 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr8:108475512-108475624 - --*---*****-------------*------------------------*----------------------------------------------#########################
TG-GTG-----TTCTGTGTCCCTC-TGATTGCTTGGGTGGGAAGAGGCT-AGGGCTCCAGTCCAGCAGGTAACTAGGCCTTCTCCTCTCCCTGCAGGGTGTGTATGCTGGGCAATAGGACC
Rat chr19:35793891-35794002 - TG-ATG-----CTCCGTATCCCTC-AGATTGCTTGGGTGGGAATAGGCT-AGGGCTCCAGTCAAGCTGGCG-CTAGTCCTTCATCTCTCCCTACAGGGTGTGCATGCTGGGCAATAGGACT
Guinea pig scaffold_264209:12531-12645 + TG-ATGCAGAGCCTTGGGTCCCCCAAGACTGC-AGGGTGGGAACAGAAGGAGGCCTCCAGCTGAGCAGGTA-CTGATG---CTCCTGTCCCTACAGGGTATGCATGCTAGGCAACAGGACC
Rabbit scaffold_204307:21169-21278 + TGGATG-----TCGTGGGTCCTGG-GGACTGA-AAGTTGGGAACAGGCTGAGGCCTGCAGCTGAGCTGTGA-GGACTC---TTCCATCCCCCACAGGGTTTGCATGCTGGGCAACAGAACG

mmu-mir-7075 (chr8:109619925-109620006 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr8:109619900-109620031 - ##########---------------------------------******------*---------*****-------------------------------------------------#########################
ATCATGCAGGGTGAGAGCCGGCTCGGGCCGCGGGGAGGAGGAC------ATGGTT-TTGGGGGGC-----ATGACTTGGGGTCCGGGGCTCGCGGAGCCAACCATGTCTTCTTTCCCAGCGTTGCTTGTCAGGCCCTTGGGGAA
Rat chr19:36958181-36958309 - ATCATGCAGGGTGAGGGCTGGCTCGGGCCGCGGGG--AG-GAC------AGGGTCTGTGGG-GGC-----ATGACTTGGGGTCCGGGGCTCGCAGAGCCAACCATGTCTTCTTTCCCAGCGTTGCTTGTCAGGCCCTTGGGGAA
Guinea pig scaffold_295337:133277-133404 - ATCATGCAGGGTGAGGGCCGGACCGTGCCGGGggt--tGGGttGGtGGtGGGTCT-GTGGGGAGC-----GGGAGTTGGGG--------TAGCCGAGCCAACGAAATCTTTTTTCCCAGCTTTGCTTGTCAGGCCCTTGGGGAA
Rabbit scaffold_124918:3518-3645 - ATTATGCAGGGTGAGGGCCGGGCC----CGGGAAG--GAGGCCGGGGAGGGGGTC-GTGGGGA-CGGGGTCGGGGCTG--------GGGTCGCCGAGCCAACGCTGTCTTCTTTCCCAGCTCTGCTTGTCAGGCCCCTGGGGAA

mmu-mir-7076 (chr8:114213501-114213572 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr8:114213476-114213597 - ------------************************--------------------------------------***--****----******----*----------*******-------------------------****************************************************--#########################
TCTGTGTGTGGG------------------------GGGACCCAATGTTTCCAGGGGAGGTGGTATGGTCTCAG---CG----GGGT------CCGG-GTTGGCTGTG-------ACAACATGACTACCACTGTCTCCCC----------------------------------------------------AGGCTGTGGGGTCCCTGCCATCCAACC
Rat chr19:41613783-41613936 - TCCGTGTGAGAGACCCCTGAGCCAAGAGGTTTAAGGGGAGCCAGATGTTTCCAGGGGAGGTGGTGTGGTCTCAG---TG----GGGT------CCGGAGTCGGCTGAAGCGTTCTACAACATGGCTACTATTCCCTTCCC----------------------------------------------------AGGCTGTGGAGTCCCTACCATCCAACC
Guinea pig scaffold_242845:4365-4567 + TGCAGGTGAGGGAGCCTTGAGCCCAGAGGTTAG-----AAGCCAGTGGACCTTGCAGAGGTAAAGTTGGCTGTG---GAGTGGGGATCCTGAGCCAG-GCTGGGTGGG-------CTGAGGTGGGAACCAGTAGCTCTGCAATGCTGGGGGTCAGGCCCAGACTGGATCCAGCCCTCCCTCACGTTGCTCTCAGACAGCGGGGTgggtGggtGggtGgg
Rabbit scaffold_83080:4676-4781 + ----------------------------------------------------AGGTGAGGAGGCAGGGCCCTGGGACCT----GGGT------CCAGGGTCAACCTTG-------CCAT--------------------------------------------ATCATCCACCCTCACCCTTCCCTGCCCGCAGGCTGCGGGGTCCCCGCCATCCAACC

mmu-mir-7077 (chr8:119976923-119976979 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr8:119976898-119977004 + ----------------------------------------------------------------------------------#########################
AAAACGCCAAATTTCGGAAACGGCATAGGCCAAGGTCCCATGGCAGGCTATTCCCTGACACACCTTCCATGGCTCCTGGCAGATCCTGTGTTTGATGCTGGAATACA
Rat chr19:47565631-47565733 + AAAATGACAGACTTTGGAAACAGCATGTGCCAAGGTCCTGCGG----CCGTTTCCTGACACACCCTCCATGACTCCCGGCAGATACTGTGTTTGATGCTGGAGTACA
Guinea pig scaffold_233269:1115-1158 + ------------------------------------------------------------CACCCTGTGTGTCCCC---CAGATCCTGTGCCTGATGCTGGAGTACA
Rabbit scaffold_183900:12858-12904 + TGTA---------------------------------------------------------ACCGTGTGGTT---GTGGCAGATCCTGTGCTTGATGCTGGAGTACA

mmu-mir-7078 (chr8:119983165-119983228 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr8:119983140-119983253 + -----------------------------------*****---------******----------------------------------*-----------#########################
TGAGATCCCACAGCCTCATAGTGGACAGGGTGTGG-----GTGGTAGGA------GACGCTGGCTGGTATTTGACCAGGTACTTTTTTT-ATCATCCACAGGCCAAGCTTCCTAACCTAAAGGAGG
Rat chr19:47571772-47571891 + TGAGAGCCCACAACTTTACAGTAGAGAGAGTATGGGTTGGGTGGTCAGA------GACATTGGCTGGTATTTGACCTGGTACCTTTTTTAATCCCCTGCAGGCCAAGCTTCCTAATCTAAAGGAGG
Guinea pig scaffold_233269:5793-5900 + AGCTCCCCCA---------------GAGGGTGGCGCTGGGCCCGCCAGATTCCCAAACAGAGGCTGGTGGGTGACCGGGACCCCCT--T-GCTGCCCGCAGGCCAAGCTTCCTAACTTGAAGGAGG
Rabbit Unknown ------------------------------------------------------------------------------------------------------------------------------

mmu-mir-7079 (chr8:125628875-125628943 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr8:125628850-125628968 + ----***---------------------****--------------------**--------------------------*-----------------------#########################
ACTT---ATCCCAGGGGGTGGTTCTGCG----CCCGGAGGGCTGAGGCAGTG--AGTCCTGTGCACAGGTCCTGTAGGCT-CCTGACTTCTGTTCTCTTTCCAGGTGTACAAAAAGGAAAAGGCCAGAG
Rat Unknown ACTTTTAATCCTAGAGGGCGGTTCTGCGTGTGC-CCAAGGGCTGGGGCAGCGTTGGTCTTGTGGACAGGTTGTGTGGGTGGTCTGACTTGTGTTCTCTTTCCAGGTGTACAAAAAGGAGAAGGCCAGAG
Guinea pig Unknown ---------------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown ---------------------------------------------------------------------------------------------------------------------------------

mmu-mir-7080 (chr8:125654006-125654072 +)

mirtron (known)

Species Coordinate Alignment
Mouse chr8:125653981-125654097 + #####################################################################################################################
AACCCTGAGGACGATGAGTGTGAAGGTAGGAGCTGGAGGTGGGTTTGGCATAGCGCTGCATCGGGCCAGGCTCACCCCTCCGTTCCCTACAGGAATCCAGGGCGTGGTGGAGGCCTA
Rat Unknown AACCCCGAGGACGATGAGTGTGAAGGTAGGAGCTGGAAGTGGGTTTGGCAACGTGCGACATCGGCC---GCTCACCCCTCCGTTCCCTACAGGGATCCAGGGTGTGGTAGAGGCCTA
Guinea pig Unknown ---------------------------------------------------------------------------------------------------------------------
Rabbit Unknown ---------------------------------------------------------------------------------------------------------------------

mmu-mir-7081 (chr9:20718534-20718608 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr9:20718509-20718633 - ----------------------------------------------------------------------------------------------------#########################
TCGGCTCTCAGTTGCTGGTCCAGGCATTTCAGAGGAGGGTGCTCGGCCGGGGATTATAAATCTGTGGTAAAGTAGTATTCCCCTGGTATCCTCCTCACAGGCCTGAGAATACCCACAGGTCCTAC
Rat Unknown -----------------------------------------------------------------------------------------------------------------------------
Guinea pig Unknown -----------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_205971:468-504 - T----------------------------------------------------------------------------------------CCCGCCCGCAGGCCCGAGAACACCCACAGGTCCACG

mmu-mir-7082 (chr9:20879941-20880028 -)

mirtron (novel)

Species Coordinate Alignment
Mouse chr9:20879916-20880053 - ########################******#---------------------------------------*******************-------------------------------------------------#########################
CAATGGTCACAGTCACCTGCTGAA------GGTACGGGCAGGAGGAGGGGAGGCACAGGGCTGGGCAACC-------------------CTGGCTCTGGGAGGCCACTGACCTGGCCCCCCTTGCTGTCTGTCTCCAGACCCCACTGGGTGGCCAGAAACGCA
Rat chr8:20098288-20098418 - CAATGGTCACAGTCACCTGCTGAA------GGTACGGGCAAGAGGTGGGG-------GTGCTGGGCAGCC-------------------CTGGCCCTGGGAAGCCACTGACTCGGCCTTCCCTGCTGTCTGTCTCCAGACCCCACTGGGTGGCCAGAAACGCA
Guinea pig scaffold_259757:13413-13555 - CAACGGCCACAGCCACCTGCTGAAGGTGAAGGTACAGGCAGAGGGTGTGGGCGCAGGTGGCTGGGTGggggGGgggTGGGGgtgggggTgtgTgtGTgggggTGgg--------------------gTgTGTgTGgtGtggggggTGGGTGGCCAGAAACGCA
Rabbit Unknown -------------------------------------------------------------------------------------------------------------------------------------------------------------------

mmu-mir-7083 (chr9:21614385-21614444 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr9:21614360-21614469 - -------------------------------------------------------------------------------------#########################
TGACTGAAGGTAAATGGGTGCAGGGGAGGGTCGGGGCTGGACAAGCAGAGACATGTGCTCATCCCTCTGCTCTCCTGGACCCCAGAATTGCTCGGGGATACCAAGGCTCT
Rat chr8:20924453-20924555 - -------AGGTAAATGGGTGCAGGGGAGGGTCGAGGCTGGACAAGCAGAGACAGGTGCTCACCCCCCTGCTGTCCTGGACCCCAGAATTGCCCGGGGCTACCAAGGCTCT
Guinea pig Unknown --------------------------------------------------------------------------------------------------------------
Rabbit Unknown --------------------------------------------------------------------------------------------------------------

mmu-mir-7084 (chr9:21918388-21918457 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr9:21918363-21918482 - ######################################**##################################################################################
GACCACTGCTGGTTGCCTCTGGCCTGCTTCTAGAGGAT--AGAGGTAGAGAGTGGCCAGCTGCTGCCAGCCTCTGACCCCTGTCCTCTGCACCACAGGTTTTATTCCCTCTGCAGTTATGGG
Rat chr8:21226473-21226593 - GAGCACTGCTGGTTGCCTGTGGCCTGTTTCTAGGGGATGCAGAGGAAGAGAGTAGTTAGCTGCTACCAGCTTCTGACCCC-GTTCCCTGTACCACAGGTTTCATCCCCTCTGCAGTTATGGG
Guinea pig Unknown --------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown --------------------------------------------------------------------------------------------------------------------------

mmu-mir-7085 (chr9:44208506-44208571 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr9:44208481-44208596 + --------------------------------*----------------------*-------------------------------------#########################
CTGGCAGCTGGCTAATGAACGGTGGTGGTGCA-GTGGGGGCAGGCCAGCAGGAGC-AGAGCCCAAGTCCTAGCTGGCCTCTCCCCACCTTCAGGCTCATCAAAGGAGGAGAGCACCCT
Rat chr8:47367430-47367544 + CTGGCAGCGGGTTAATG-ATGGTGGTGGTGCA-GTGGGGGGAGGCCAGCAGGAGC-AGAGCCCAATTCCTAGCCGACCTCTTCCCACCTCCAGGCTCGTCAAAGGAGGAGAGCACCCT
Guinea pig Unknown ----------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_201925:55519-55624 - CCCCTGGCAGGTTAATGAATGGTGG-GGTGCAGGTAGGGGCAGGGCAGCAGGAGCCTGAGCCCA-----------GCCCCTTCCCGCCTCCAGGCTCCTCGAAGGAGGAGAGCACCCT

mmu-mir-7086 (chr9:45074726-45074790 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr9:45074701-45074815 - -----**-------------------------------------------------------------------------------------#########################
ACGTT--CTGCCTGGCCTTTCCCTCCCCTCTTAAGAGGAGAAAGGTTTGGGCACAAGCTGTTCCCTCAGTGTCCGTTCTGATATCTCCTCAGGTACGGAAACTCAACCTGGAATGAC
Rat chr8:48221899-48222013 - GCATT--CTGCCTGGCCTTTTCCTTCCCTCTTTAAAGGAGAAAGGTTGGTGCACAAGCCGCTTCCCCAATGCCTGTTCTGGTATCTCCTCAGGTACGGAACCTCGGTCTGGAAAGAC
Guinea pig Unknown ---------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_173882:2022-2137 - GCTCTCTCTCCCTGGTGCCTTGATCCCGTCTTCA-AGGAGGTAGGCCTGCGCACAAGTTTCTCTCCCAGTGCTTACCCTGGTGTCTCCCCAGGTATGGACAGGGGCCCTGGAAGTCC

mmu-mir-7087 (chr9:45747604-45747673 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr9:45747579-45747698 - ---------*---*******-----------------------------------------------------------------------------------#########################
GGGACCAGG-GGG-------TGCCATGGAGTGGGTTGGAGGCAGGTGTGGAGCTGGTCTCTGCAGAGCAGACTCAGTAGGCTGCTGGCTCTCTCCCCTGCCAGAAAACCCCCGCAGAGTCCAGGGAGC
Rat chr8:48911259-48911374 - CGGG----A-TGG-------TGCCGGGGACCGGGTTATTGGTGGGTGTGGAGCTGGTCCCTGCAGAGCAGACTCAGTAGGCTGCTGACTCTGTTCCCTGCCAGAAAACCCCCGCAGAGTCCAGGGAGC
Guinea pig Unknown --------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_214625:67884-67994 + GGGAAGAATTGTGTAACAAAGGCCGGGA----------------GCGGGGTGCTGGCCCGGCCAGTGCCGGAGCAGTGTGCAG-TGGCCCGACTTCTCCCCAGAAAACCCCGGCAGAGTCGAGGGAGC

mmu-mir-7088 (chr9:107983829-107983914 +)

mirtron (novel)

Species Coordinate Alignment
Mouse chr9:107983804-107983939 + #########################-----------------------------------**------------------------------------*---------*------#########################
CTGTGCCATCTCTTCCAGAAGAAAGGCAAGTGGTGGTGAGGAGGGGAAACAGGCTGAGTA--ACAGGGGCCACGAGGCCTCAGGCCCTGTTGACCTTC-CTCCATTGC-TTCCAGATTATGTGCGGACCTGCATTATGGA
Rat chr8:113349209-113349336 + CTGTGCGATCTCTTCCAGAAGAAAGGCAAGT---------GAAGAGAAATGGGGTGAGCA--ACAGAGGCCACAGAGCCTCAGTCCCCGTTGACCTTC-TTCCATTGCCCCCCAGACTATGTACGGACCTGCATTATGGA
Guinea pig scaffold_290317:72689-72820 - AGCTGTGATCTCTTCCAGAAGAAAGGCAAGTGGC-A---CAAGGAGGAGCAGGGTGGG-G--ATAGGGAGCCCAGGACCGCTGGTCCTGTTGACCTTTCCTCCCTTGC-TTCTAGACTATGTGCGAACATGCATTATGGA
Rabbit scaffold_88950:4149-4276 + CGCTGTGACCTCTTCCAGAAGAAAGGTT-------G---TGGGGAGGGGCAGGGGCAGTGGGAT-GGGGCTCTAGGGTCTCAGTCAACGTTGACCTTCGATCTCTTTC-TGCCAGACTATGTACGGACCTGCATCATGGA

mmu-mir-7089 (chr9:109792147-109792214 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr9:109792122-109792239 + ------------------------------------------------------------------------------------****************************************---------#########################
AACAGGCAGGTGGTCTACTGCGCTGCTGGGCCGTGGGACCTACAGACTCCTGGGTGTGGCTTAGCAGGTGCTCAGTGTCTGCTG----------------------------------------TCTCCACAGGGTGCCGTGAATCTGCACATGGAAG
Rat chr8:114251617-114251662 + CA------------------------------------------------------------------------GTGTCTGCTG----------------------------------------TCTTCACAGGGTGCCGTGAACTTGCACATGGAAG
Guinea pig scaffold_161570:5739-5824 - CA------------------------------------------------------------------------CAGTGCCCTGCGTGCAGCCTGCCGGCCACGGGGCACTCAGAGACTCGGCCTTCCTGCAGGGTGCTGTGAACCTGCAcatggagg
Rabbit Unknown --------------------------------------------------------------------------------------------------------------------------------------------------------------

mmu-mir-7090 (chr9:120864204-120864265 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr9:120864179-120864290 + ------------------------------------**--******************-------------------------------****************************------------------#########################
CATTCTAAAAAACTGAAGGAAATAAAGTTCTCAGAG--TT------------------GGGACACCATGAGGGCTAACAGGCCTGCCTT----------------------------TGATGTCTGACTTTGCAGGTGGGATGCAGGCACTGGGGCTTCA
Rat chr8:125983298-125983445 + AGTTCTAGAAAACTGGAGGAAATCAAATCCTCAAGGGGAGGGGAGGCTTCACAAATCAGGGACAC--TGAGGGATGACAG---------GCATGCTTAGC-TAAGAGCCCATGCCCTTGATGTCTCACTTTGCAGGTGGGATGCAGGCACTGGGGCTTCA
Guinea pig scaffold_287431:39086-39113 + ------------------------------------------------------------------------------------------------------------------------------------CAGGTGGGATGCAGGCACTAGGACTCCA
Rabbit Unknown T-----AGAAAGGGACCGGATATA-AACACTCAGGG--AG------------------GGACTAC--AGAGGGTGTTTAGGACTGATGGGGATGTTGAGCCTACCAGCCACTGCC----------------GCAGGAGGAATGCAAGCCTTAGGACTTCA

mmu-mir-7091 (chrX:71519366-71519444 -)

mirtron (novel)

Species Coordinate Alignment
Mouse chrX:71519341-71519469 - #########################-----------------------------------*****--------------------------------------------#########################
TGTCTACCAGCGCTGGCAGAATGAGGTAGGGGTGATAGATTCCATGGCAGAGGGGATGGT-----GCAAATGCCTTTTAGCAAGACGCAGTGGCTTCTGTCGTCTCTAGAATGTGATTCTGCTTGGAGACTTCA
Rat chrX:160335546-160335674 + TGTCTCCCAGCGCTGGCAGAATGAGGTAGGGGTAATAGCTTTCATGGGAGAGGGGATGGT-----GGGACTGCCCTTTGGCAAGACTTAACAGCTTGTCTCATCTTTAGAATGTGATTCTGCTTGGAGACTTCA
Guinea pig Unknown TGTTGCCCGCCGCTGGCAGAGCAAGGTTGGGTTCACAGCTGGCATAGGGGTGGGGGAGTGGGGAGCCATGAGCCAGGAGGCCAGG----CCAACACCTCTATGTCCTAGGACATCATTCTGCTGGGGGATTTCA
Rabbit Unknown CGTCTCGCAGCACTGGCAGAACCAGGTAAGGTGGGGCGTTGGTGCGGAAGG-----CATGGGGAGCGGGTGGCCCAGCGGCCAGGCCCG-TCACTGCTGCCGTCTCCAGGACGTGATCCTGCTCGGAGACTTCA

mmu-mir-7092 (chrX:71562702-71562768 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chrX:71562677-71562793 + --------------------------------------------------------------------------------------------#########################
tccagggctacataaacgtgattatgtctaaaggcaaaCTCACAGAATCATTTTCTGAAAAAATAAAATGTTCTTTGTTTTGTTTGCCTTAGAGATCACCACAAAGAAAAAGAAATT
Rat chrX:160293926-160294041 - gccagggctacataaatgtgattatgtctaaaaacaaaCCCAAAGAATTATTTTCTGAAA-ATTAAGATGTTCTTTGTCTTGTTTGCTTCAGAGATCACCACAAAGAAAAAGAAATT
Guinea pig scaffold_228367:1435-1476 - GTTTGGTT---------------------------------------------------------------------------GTACCCTAGAGGTTACCACAAAGAAAAGGAAGTT
Rabbit Unknown ---------------------------------------------------------------------------------------------------------------------

mmu-mir-7093 (chrX:131292170-131292270 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chrX:131292145-131292295 + -------*---***-----------------------------------------------------------------------------------------*---------------------------#########################
GAATGTG-CTC---TTGGGGGTGGGGGCGGTGGGCAGGATGACAGAAGGAAAACCTATCAGATAGTTTGTTCATAATCCTTCTCTCTCAACAGCACTTAGTGT-CCATGTTTTCCATCTGTCATCCTGCAGGTCTGCTGTAGCAGGTGGCACTGCT
Rat chrX:122218547-122218697 + GAGTGTG-CTC---CTGGGGGTGGGGGCGGGGGGCAGGGTGACAGAAGGAAAACCTATCAGATAGTTTCTTCATAATCCTTCTCTCTCAACAGCACTTAGTGC-CCTTGTTTTCCATCTGTCACCCTGCAGGTCTGCTGTAGCAGGTGGCACTGCT
Guinea pig scaffold_230000:9413-9563 - gtgtgtgtctcaCGCTCAGG---AGGGAAGAGGGGGAAATGACAGCAGGGAAGCCTATCAGATAGTTTGTTCGTTATCCGTT--CCTCAGCAGCACTTAGTCCCCCATGTTTTCTATCTGTCATCCTGCAGGTCTTCTGTGGCAGGTGGCACTGTC
Rabbit Unknown ------------------------------------------------------------------------------------------------------------------------------------------------------------

mmu-mir-7094a (chr12:115707618-115707677 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr12:115707593-115707702 - AGGTAAGGAGCTCACCAGTTCTGAATCTGAAGAGGATAC--AGGGTCTGAAGTGACAATGACATCTACTCTGCTGT-TCTCTCCACAGGTGTCTACTCACAGGTTCAGCTCCA
Rat Unknown -----------------------------------------------------------------------------------------------------------------
Guinea pig Unknown -----------------------------------------------------------------------------------------------------------------
Rabbit scaffold_168456:1964-2037 + ----------------------------------GACACAGAGAGTGTG-AGTGACAGTG-TATTGACCAGGATGTCTGTGTTTGCAGGTGTCCAGTGTCAG---CAGCTGGA

mmu-mir-7094b (chr12:115751846-115751905 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr12:115751821-115751930 - --------------------------------------------------------------------------*--------############################
AGGTAAGGGGCTCACCAGTTCCAAATCTGGAGAGGATACAGGGTCTGAAGTGACAATGACATCTACTCTGCTGT-TCTCTCCACAGGGGTCTACTCAGAGGTTCAGCTCCA
Rat Unknown ---------------------------------------------------------------------------------------------------------------
Guinea pig Unknown ---------------------------------------------------------------------------------------------------------------
Rabbit scaffold_74083:33-106 + GA--------------------------------CACAGAGAGTGTG-AGTGAAAGTG-TACTGACCATGTCGTCTGTGTTTGCAGGTGTCCACTGTCAG---CAGCTGGA

mmu-mir-7115 (chr11:70251757-70251820 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr11:70251732-70251845 + ------------*-****-------------------------------*-----------**----------------------------------#########################
GCCCCCATGGGG-T----TTCCACCATGTGGTCGGGGGTTGTGGTGCCG-AATTGTCTGTG--TCACCCAAAGCCACTTGGTCCCCTGCCCCCACAGTGAGACAGTACGCCGACATTTGCCT
Rat chr10:57281844-57281960 + GCCCCCAGGGGGAT----TTCCAGCATGTGGTCGGGAATTGTGGTACAGTAACTGTCTATACTTCACCCAAAGCCACTTGGTCCCCTACC-CCACAGTGAGACAGTATGCCGACATTTGCCT
Guinea pig scaffold_179090:1306-1419 + GAGCCAAGAGGGATGGGCTTGTA--CT---GTGGTGGAGTGTGGCGAGGTGATAGTCTGCACTCCATCCAGCGCTGCTCGGC--CCTGCC-CCACAGTGAGACAATATGCAGACATCTGCCT
Rabbit Unknown --------------------------------------------------------------------------------------------------------------------------

mmu-mir-7116 (chr11:100339725-100339794 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr11:100339700-100339819 - -----------------------------------------------------------------------------------------------#########################
tTtAACCACCACAGTAATAGTGACTAACAGTGAAGACATCAGGAAAAAAAAAATAAGAAATGATAAACCTTTTTTTTTTTCCTTTGCCTTCTCAGAAGCCAAATCTTATCCTGAATGTGG
Rat chr10:89422860-89422976 - tgtAACCTCTATAGTAATTGTAGGTAACAGTGAAG-CATCAGGAAAAAAGAAAAGAGAAATGATAAAACTTCTTTTTATT--TTTGCCCTTTCAGAAGCCAAATCTTATCCTGAACGTGG
Guinea pig Unknown ------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown ------------------------------------------------------------------------------------------------------------------------

mmu-mir-7117 (chr15:27501249-27501313 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr15:27501224-27501338 + ################*****##################**********########################*****#########################################################
ACGTCAAATAAAACAA-----GGTGTTCTTTGTGATCTG----------GGGGCTCAGCTGAGGATAAGCCCG-----CCTTGTCACCGCTGTCCTTCTCTTTCCCCCAGAATAACCCCAGCAATAAACTGGCGA
Rat chr2:79395694-79395807 + ACGTCAGATAAAACAA-----GGTGCTCTTTGTGATCTG----------GGGGCTCAGCCGAGGTTAAGCCCG-----CCTTGTCATCTCTGCCATTCTCTTTT-CCCAGAATAACCCCAGCAATAAACTGGCCA
Guinea pig Unknown ---------------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_182984:49998-50130 + GCAGCAGAGGAAACGAGACTAGACGCTCTTTGCCGTCGGCGACAGGGCAGGGGTTCGGCCCAGGTCAAGCCAGAGCCCAGTCCTCATCACCGCTCTTCTCTTC--CCCAGAACAACCCGAGCAATAAACTCGCCA

mmu-mir-7118 (chr15:88993278-88993338 -)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr15:88993253-88993363 - ###########-----*******-----------------------********---------------------*********-------**-------------------#########################
CAAGCTACAAGGTAGG-------GGGTGGGTGGGGTCTGGGGAAGG--------CGGGAGAGGGAACAGAACAAC---------AGCTAAC--TCTACGTCCTCCTCCACAGTGACTCTCTACAACTGCTCCTTTGG
Rat chr7:127464907-127465020 - CAAGCTACAAGGTACG--------------TGGGGTTTGGGGAAGGCGGGGTGCCTGGGGGTGGGGCAGAGCAAC---------GGCTAACAAGCTATACCCTCCTCCACAGTGACTCTCTACAACTGCTCCTTTGG
Guinea pig scaffold_287326:84-203 - CAGGCTCCAAGGTGGGTAGGGTGGGATGGGTAGGACATGAGGGTGG--------CGG--------GCAGGGCAGCGCTGGGCACTGCTGACC-TCTGTGCTCTTCTTCACAGTGACCCTCTACAACTGCTCCTTTGG
Rabbit Unknown -----------------------------------------------------------------------------------------------------------------------------------------

mmu-mir-7119 (chr4:126237104-126237162 +)

5p_tailed_mirtron (novel)

Species Coordinate Alignment
Mouse chr4:126237079-126237187 + ---*******------------------------------------------------*****---------------------------------#########################
TTT-------TAAGTAGCTTTGAAGAAGGACAAAGGACTGGGGGATTGGGTGCCTTCT-----TTTTAAAAAAAGAAAAAACACCGTTTCCTCCAGATTCTGATGAAGAGATTTTTGTGAG
Rat chr5:145933644-145933743 + TTT-------TAAGTAGCTAGGAAGAAGGACAAAGGGTTGGGCGACTGGGTACCTTCT-----TTTCAAA---------GACACCGTTTCCACCAGATTCTGACGAAGAGATATTTGTGAG
Guinea pig Unknown -------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_96897:1272-1368 - TTTCCAGGAGTATGAAGCTAGGAGGAAAGCCAAATGAT--------TGTAAACCTTTGAAAAATTTT----------------ATGTTTCCTCCAGATTCAGATGAAGAGATGTTTGTGAG

mmu-mir-877 (chr17:36097675-36097759 -)

mirtron (known)

Species Coordinate Alignment
Mouse chr17:36097650-36097784 - #######################################################################################################################################
CACTGCTGCTGAGAAACTAGAAAAGGTAGAGGAGATGGCGCAGGGGACACAAGGTAGGCCTTGCGGGTCTGTGGACCCTTGGACATGTGTCCTCTTCTCCCTCCTCCCAGGTGTATGAGGAACTGCGAGCTACCG
Rat chr20:2958159-2958293 + TACTGCCGCTGAGAAACTAGAAAAGGTAGAGGAGATGGCGCAGGGGACACAAGGTAGGCCTTGCGGGTCTGTGGGCCCTTGGACATGTGTCCTCTTCTCCCTCCTCCCAGGTATATGAGGAACTGCGAGCTACTG
Guinea pig Unknown ---------------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_204107:39525-39659 + CACAGCCGCCGAGATGCTGGAGAAGGTAGAGGCAGTGGCACAGGGCGCCTGGGCTGAGATTCGGGGGTGCCGGGGCCCTGTGGCATGCGTCCTCTCCTCTGCCATCCCAGGTGTACGAGGAATTGCGGGCCACCG

uc007atr.12 (chr1:40056662-40056732 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr1:40056637-40056757 + ----*************------------------****--------------------------------------------------------------------------#########################
TTGC-------------TGCCGAGCTTCTGGAGTG----CCGGTTACCCACACAGGGGACTCAGTCGCGTCCCTCCTGGATGTACTGACTGCTGGGTCATTTCTGTGTGACAGGAGTACATCAGGCGGCAGCTAGAGG
Rat chr9:39185651-39185775 + TTGC-------------TGTCCAGCTTCTGGAGTGGTGCTTGGTTACCCCCACAGGTGACTCAGATGCTTCCCTTCCGGGTGTATTGACTGCTGGGTAATTTCTGTGTGACAGGAGTACATCAGGCGGCAGCTAGAGG
Guinea pig Unknown ------------------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_203349:87218-87347 - TGTCACAAAAGATGATTGGAGCAGCTGC--------TTCTCGGTGCCCCAGTCCTGTGGTTCCGATGCCGTCTTTGGGGATAAATTGACTGCTGGGTACTTTCTGTGTGGCAGGAGTATATCAGGCGGCAGCTGGAAG

uc007dqc.8 (chr1:174210218-174210279 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr1:174210193-174210304 - ---------------*******-------------------------------*-----------------*****------------------------#########################
AGAGGAACTAAGGCA-------CACAGCGGGTGGGCGGGGAAGGGCAGCAAGA-CCGGCATGAGCATAGAT-----GCTGTCTCTGCTCCTACCCTCCAGAGAAGCCAAGGCGTGTGTAGTGCAC
Rat chr13:88266303-88266415 - AGAGAAACTCAGGCA-------CACAGC----GGGCAGGGAGGGGCAACAGGA-CTGGCCTGAGCGTAGATGGTCAGATGTCTCTGCCCCTACCCTCCAGAGAAGCCAAGGCATGTGTAGTGCAC
Guinea pig scaffold_280952:54215-54314 + AGTGGGGGTGAGGGAACAAGGAAGCAGCGG----------------------A-CGGGTCCAGGCCGAGGCAGTCAGCCATGCC--ACCCCACCTTCCAGGGAAGCCAAGGCATGTGTGGTACAT
Rabbit scaffold_191613:6952-7062 + AGGCAGACTGAGGTC-------TAGA------GGGCTGGGAGAGGCAGCAGGGGCCGGCAC-AACACAGGGAGTCAGCTGTCTCTGCCCCCGCTCCCCAGAGAAGCCAAGGCATGTGTGGTGCAC

uc007ffx.11 (chr10:60809886-60809952 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr10:60809861-60809977 - -----------------*---------------------------------------------------------------------------#########################
TTCAGAAGTGATTTGAT-GCCTCCCAGTGGCTGATGGGTGGCAACGGGCTGTGTTGCGGTCTCTGATTACACTCCCGATTCTCACTTTATCAGGGCAGCCTCCCCGTTGGCCAAACCC
Rat chr20:28709375-28709492 - TTCAGGAGTTATCCCGTGGCCTCCTAGTGGCTGATGGGTGACCGGGGGCTGCGTGGTGGTCCCTGATTACATTCCGGATTCTCACCTTGTCAGGGCAGCCTCCCTGCTGAGCAAACCC
Guinea pig Unknown ----------------------------------------------------------------------------------------------------------------------
Rabbit Unknown ----------------------------------------------------------------------------------------------------------------------

uc007fwo.7 (chr10:77454187-77454252 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr10:77454162-77454277 - ------------------------------------------------------------------------*-------------------#########################
TGAGCCACACATTTTTCTGAGATGAGAGGCACTCTGGTTTTGTGAGTTGTATGTATGCCTCCTAGCCAGGCT-GATGTCTCTCTAACCACAGGACACTGCCCAAGCCCCACCTGGAG
Rat chr20:11028730-11028792 + ------------------------------------------------------GTGCCTCCTATCTAGGCTTGATGTGTCTCTAACCACAGGACCCTGCCCAAGCCCCACCTGGAG
Guinea pig Unknown ---------------------------------------------------------------------------------------------------------------------
Rabbit Unknown ---------------------------------------------------------------------------------------------------------------------

uc007gba.3 (chr10:79461130-79461195 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr10:79461105-79461220 + -------------------------------------------------------------------------------------------#########################
GAGACCTGGGGCTGTAAATCGGGCAGGGGGTTGGGGAGGAGGCTGAGCTGCAGGCTGAGCTTGGCTGCCTGTTGGCATCCCCTCCCCTCAGCACGACCACAGGAGAGTGACCAGCC
Rat chr7:11222153-11222231 - G---------------------------------GGAGGAGGC---ACTGCAAGCCGATCTTTGCCTACCATTAGCATCCCCTT-CCTCAGCCTGGCCACAGGAGAGTAACCAACC
Guinea pig Unknown --------------------------------------------------------------------------------------------------------------------
Rabbit Unknown --------------------------------------------------------------------------------------------------------------------

uc007gdg.11 (chr10:79881561-79881624 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr10:79881536-79881649 - --------------------------------------------------------------------------------------############################
GAACCTGACTACAGCATGGTAGGGGGCCACATGAGGGCATGTGGAGATGGCAGTGGCCAGACCTTCCTCTCTGCTCTTGCTCCCAGCAGATACTCAGCCGAAGAAGGTCCGGAA
Rat chr7:10802631-10802743 + AGACCTGACCCCAGCGTGGTAGG-AGCCACGTGAGGGCATGTGGAGAGGGCAGTGGCCAGACCTTCCTCTCCTCTCTTGCTCCCAGCAGATACTCAGCCCAAGAAGGTCCGGAA
Guinea pig scaffold_195246:3623-3711 + GG-----------------T--------ATGAGAGTTCCCGAGGGTAGCGCAGGGACCGCAGTGACCTTACCTCTTCTTCCTTCCACAGACTCGCAGCCCAAGAAGGGCCGCAA
Rabbit Unknown ------------------------------------------------------------------------------------------------------------------

uc007gee.6 (chr10:80132148-80132212 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr10:80132123-80132237 - --------------------------------------------------------------------------**----------*********------#########################
AGGAAGCCCTGGGGCATCCCTGATGGACTGAGGCAGGGCTAGGAGCTGGCTGGTCTGTGGAGGTGACCTAGCTC--TCCCTGGCCT---------GCACAGGATCCATCCTAAGCCACATCCATAG
Rat chr7:10556780-10556894 + AGGAAGCCCTAGGACATCCCTGATGGAGTGAGGCAGTGCCCAGAGCT-GCTGGTCTGTGGAGGTGACCTAGCTCTCTCCCTGGCCT----------CACAGGATCCATCCTGAGCCACATCCACAG
Guinea pig scaffold_274601:589-685 - CGAAGGCC--------------------------AGGGTAGGGGGGTTGGCGACC-TCGGAGATGACCTGTGTC--CTCCTTGGTTGTGGCTTCATCCCAGGCTCCATCCTGAGCCACATCCACAA
Rabbit Unknown ------------------------------------------------------------------------------------------------------------------------------

uc007gge.5 (chr10:80642197-80642273 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr10:80642172-80642298 + #########################-------------------------------***********************************************************************************************---------------************************************----------------------------------------------##########
GCTCATCCTGGACCCCATCTTCAAGGTGGGTAAGCTGTGGTCCTGGCCTGTGTTCC-----------------------------------------------------------------------------------------------CAGCCTTGGGAAGTC------------------------------------GCTCCCATGACCTGGCCTTGCTCATCTGCTTCCCTTGTGCAAACAGGTGTTCGACG
Rat chr7:10019566-10019600 - GCTCATCTTGGACCCCATCTTCAAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTGATG
Guinea pig Unknown GCTCATCCTGGACCCCATCTTCAAGGTGGGACAGGGTT-------GCCTGGGGGCCCTGGGTCGGGAGTGTCAGCCCCTTTCGCAGCAGGGCtttgcgccccccccccccatgtgaCAAGGACACGGGCGAGAGGGGGCCCAGGTGTCCTTTAGTCTTTTGAGGTCCCAGGAGCCACCCAGGGCCCATGCGGGTTTCTCTCTGCTTCGATGACCACTCCC------------T-CCCTGTCCATACAGGTGTTCGATG
Rabbit scaffold_151005:2402-2408 + ATTGATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

uc007gtg.2 (chr10:90460083-90460147 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr10:90460058-90460172 - ---------------------------*---------------------******------------------------------------------#########################
GATTGACTTTTTGGCTGTGTAGCACCA-GGGCAGGCCTTAGAGATGTTT------AGAGTGTATTGACATTCCTAAACAAACCTAATTGCCTTCCAGATCTGGAGTTTTGACCTCCTTTCCC
Rat chr7:27939921-27940034 - GATGAACATCTTGGCTGTGTAGCACCG-GGGCAGGTCTTATAGATGTTT------AGAGTAT-TTACCATTCCTAAACAATCCTACTTGCTTTCCAGATCTGGAGTTTTGAACTCCCTTCCC
Guinea pig Unknown --------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_204800:84543-84663 - GATTGATTCCATGGCTAAGTAGCACTGAAGGCAGGGTTTGCAGATGCTTATTTTGAGGGTGT-TTTCCATTCCTAAACAATCATAATTGCTTTCCAGATTTGGACTTTTGAACTCCTTTCCC

uc007gzo.3 (chr10:110200911-110200982 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr10:110200886-110201007 + -------------------------------------------------------------------------------------------------#########################
TAACTTGGATGTCAGACCTGTTCGCAGACCTCTTGGGGAGTTGATGCTCAGAAGCGCTCATTTGCCTGACGTCTCTTGGCTTCTTCTCCGCAAACAGGCGTGGAAAGGAGACGCATCTATGA
Rat Unknown TAACTTGGACGTCAGACACGTGC-CAGGCC-CTTCAGGAGTTGGTACTC-GAAATGCTCATTTGCGTGATGTCT-TTGGCTTCTTCTGTGCAAACAGGTGTGGAAAGGAGACGCATCTATGA
Guinea pig Unknown --------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown --------------------------------------------------------------------------------------------------------------------------

uc007hib.3 (chr10:126604483-126604557 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr10:126604458-126604582 + ---------------------------------------*-------------------------------------------------------------#########################
GACATAAAGTTCTGTATGGCACGTGGTGGCAGGGGGAGA-GAAAATGAGGAAGAATTCAAGACTGTCTGTGAAATTCTGGCTTCCTCATTCTACCTCCCAGGGCTAAGTCTGCAGGAAGCTTCTGT
Rat chr7:67122769-67122892 + GCCATAAAGCTCTATATGGCACGTGGTGGAACGGGGAAA-GAAAATGAGGAAGAGTTCAGGACTGTCTGTGTAATTCTGGC-TCCCCGTTCTTCCTCTCAGGGCTAAGTCTGCAGGAAGCTTCTGT
Guinea pig scaffold_219281:658-772 + GGTG--AAAGTTAGGGTTGTATGTGTTGAA-----G-GAGAAAATTAAGGAATAGTTTAGGACTGCTTAT--AATTTTGAT-CCCTCATTTTTCCTGCCAGGACTGAGCCTGCAGGCAGTGTCTGC
Rabbit Unknown ------------------------------------------------------------------------------------------------------------------------------

uc007hiu.6 (chr10:126714246-126714310 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr10:126714221-126714335 + ---------------****--------*--**************----*------------------------*******************************************-------------------------------------#########################
TAGGGATGTGGTCCA----AGAAGGGA-GC--------------CCTT-GCAGGGGTTGGAGGGTGACAAAGA-------------------------------------------ATCGCCTCCTCCTCTTGCCCCTCCTCCTCCCCCATAGGTTGCAGAACTCGAGAAGCGTCTGA
Rat chr7:67234922-67235066 + TCGGGATGGATTCCA----AGAAAGGA-AC--------------CCTTGGCAGAGGTTGGAAGGTGGCAAACGT-TAcctccttctcctcttcctcctctccctcctccttcccctcct-----------ct--ccttcctcctcccccATAGGTTGCAGAACTCGAGAAGCGCCTGA
Guinea pig scaffold_274216:6148-6297 - TAGGGATGTGTTACAGGGAAAAAGAG-TAC--------------CCTAGGGAAGGGATGGGGAGTGATAAGCACACAAGGCATGATCTTATTTCTTCTGTAGAGGCATGATGGCAGATC-----------TT--ACTTCCTGTCTACCCCTAGGTTGCAGAACTTGAGAAGCGCCTAA
Rabbit scaffold_138337:19026-19132 + AAGCAG----------AGAAGAGCAG-CATCCGGGTGCTTCCGCCCT-GGCGGCGG--GGAAGCTGGCGGCGA-------------------------------------------ATC-----------TT--CCCTC-TCTCCTCCACCAGATTGCAGAACTCGAGAAGCGCCTGA

uc007hjx.61 (chr10:127011160-127011222 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr10:127011135-127011247 - --******************************----*---------------------------------------------------------**-------------*******------------#########################
GT------------------------------GTGA-GGAGGGGATGAGACCTGGGTGAGAAGGGCCAGGGAGGGATCAACACATCCCAGGATG--CTCTTGCTTCCTC-------TCTCTGGGCCAGCTCCAAACCCATGTGAGGCCAATGG
Rat chr7:67555595-67555718 - GGGGGTGGG--------------------CGGATGAGAGTTGGGGTGAGAGCCAGGTGGGAAGGGACAGGGAAGGATCAACACGTCACAGGATG--CTCTCGCTTCTTC-------TCCCCGGACCAGCTCCAAACCCATGTGAGGCCAATGG
Guinea pig scaffold_259248:5747-5892 - GGtGGtGGGtGGtGgtGGGtGGtTAAAAGCGGATGA-AGAAGGGGTA-G-GCCAGGAGAGAAAGGCCGGGTAGGGACC-ACAGCTCACAGGATGTGTTGTTGCTTCCACACCCCTCCCCC---TCCAGCTCCTAATCCATGTGAAGCCAATGG
Rabbit Unknown ---------------------------------------------------------------------------------------------------------------------------------------------------------

uc007hyc.5 (chr11:6164037-6164099 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr11:6164012-6164124 - ----------------------------------------------------------------------------------------#########################
AGGAGGATGGGGCGTGGGGTGAGCTGGGGCGTGCGGAAGGACAGATCCTGTGGGCTAGTGGTACACGCTTGATCTTCTCCCTCTGCAGGACAGCTCGAGCCAACAACCCAGGC
Rat chr14:86990718-86990830 - AGGAGGATGGGGTGTGGGGCAAGCTGGGGAGTGCAGAAGGACAGACCCTGCAGGCTAGCGATACATGCCTGGCCTTCTCCCACTACAGGACAGCTCGAGCCAACAACCCAGGC
Guinea pig Unknown AAGAGGCCAGGCAGGTGGGCAAGGAGGGCTGGGTGGAG-------CCC--TGGGGCAGAGATGCA-GTCTGATCCTCTCCCGTCACAGGACAGCACGTGCCAACAACCCCGGC
Rabbit Unknown -----------------------------------------------------------------------------------------------------------------

uc007ihp.3 (chr11:29647534-29647596 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr11:29647509-29647621 - ------------*******--------------------***-**-------------------***-------********-----------------------------############****************************************************************************************************#############
ACTGGGGCAGAG-------TTAGTGTTGGGAAAGACAGC---C--AAGAGAGTCTGTGGAACTG---AGGAAGC--------AGATGGACTCAGTTCCTCTCCTCTTGCAGGTGTCAACAGGA----------------------------------------------------------------------------------------------------GCCTATAAGCGCC
Rat chr14:110777399-110777499 - ACTGGGG-----------TTTAGTGTCAGGGAAGACAGCA---------GAGTCTG--GGACTG---AGGAAGC--------AGATGGACTCAGTTCC--TCCTCTTGCAGGTGTCAACAGGA----------------------------------------------------------------------------------------------------GCCTATAAGCGCC
Guinea pig scaffold_252540:9428-9534 - GGGA-TCCGGAGGCAAGGCCTAGGGTC-TGGCAAACAGCACCC--AA-------AA--GGACTG---AGTTGCT--------ACATGGACTC-----CCTTCTACTTGCAGGTGTCAACAGGA----------------------------------------------------------------------------------------------------ACCTACAAACGCC
Rabbit scaffold_180993:45965-46188 + GGGGCTGCAGAGATAGGGCCC-GTGTTCTGGACAGCAGCACACTGACTGAAGTCTGTTGAACTGCAAAAGAAACACGTGGTGACG-----TGGGTTCCCTTCCACCTGCAGGTGTCA-----ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTATA-GCGCC

uc007ikx.26 (chr11:34364951-34365013 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr11:34364926-34365038 - ---*-----------------******--------------------------------------------**----------------#################################
tGT-GTGTGTGTTTtTGTGTG------TGTtTtAAACAAAGGAAGCTAGACAGTAACCATACATACCTGGC--ACTGTTTTGCTTCCAGAATGCCGGGACATTCTGCTTCCTGTCATCACCA
Rat chr10:19475742-19475855 - GgtTGgGTGTgTGTGTGTgTg------TGTtTTTAACAAAGGAAACTAGACAGTAACCCTACGTGCCTGGC--ACTCCTTCGCTTTCAGAATGCCGGGACATTCTGCTTCCTGTCATCACCA
Guinea pig scaffold_289535:167513-167629 - GTtTGTtTtTtTtTtTGTtTGtttGtttgttttGtt-----tgggtGTGAGAGGAAGTTCACGTGCCTGTGAAACTGCTATCCTTTCAGAATGCCGGGACATTCTGCTCCCTGTTATCACCA
Rabbit scaffold_209168:47010-47106 - TGT-ATATATAC------AAG------TATAT--A------AAAACT---GTGGAAGCCCGCATGCCTGAGA-ACTGCCTTCATTGCAGAATGCCGGGATATCCTGCTTCCCGTCATCACCA

uc007ili.13 (chr11:35690121-35690185 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr11:35690096-35690210 - -------**********--********-------------------------*************-----------------------------------------------------*---#########################
TGGGCTG----------GC--------GAGTGCACCTATTAGGCCGTTTTTG-------------GGAGCTGGAGCACTGCAGCCCTTTGGAGTGTTACTGTCTTGCCTCCTCTCCCT-CAGGCTGAAGTTAAATAGCAAGAGGAAC
Rat chr10:20788591-20788725 - TGGCCTG----------GTGCCTTTAAGGGCCTGGGCCTTATTCTCTTTTCCGGAGATCGCAGGAGGAGCTGGAGCATTGCATCCCTTTGGAGC-TGATTGTCTTACCTCCTCTCCCT-CAGGTTGAAGTTAAACAGCAAGAGGAAC
Guinea pig scaffold_284057:86877-87008 + TGTTCTGTGTCCC-------TCTGTCAGAGCAGAGGCTTGTGCCTCCTTTTGGGGGAATGGGACACGAGGAGAAGGGCTGAATCCTTTT------TCACTGTGCT--TTTCTCTCCCTTCAGGTTAAAGTTAAACAGTAAGAGGAAC
Rabbit scaffold_200675:20341-20474 + GGGTCTGTGTGTCCTATGTGTCTGTAAGAACACACATCTTTGCTTGCTTTTGG-----------AGGAGGTGGAGGGCTGGATGCCCT-GAGGC-AGCTCCTCATGTCTTCTCTCCCTGCAGGTTGAAGTTAAATAGTAAAAGAAAC

uc007jhm.3 (chr11:61300516-61300580 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr11:61300491-61300605 + ##################----------------******--------------------------------------*------------*******------#########################
ACGGGGAGTACTGGCTGGGTAAGGTGGGGCCATG------GGGTGGGGGCTGCCCCTCAGCCAAGTCTCTGCTGACCG-GCTGCCACCCGT-------CCCTAGGGCTGCAGAACCTGCACCTCCTGAC
Rat chr10:47647507-47647621 + ACGGGGAGTACTGGCTGGGTAAGGTGGGGTCATG------GGGTGGGGGCTGCCCCTTAGCCAACTCTTGGCTGACCA-GCTGCCACCCCT-------ACCTAGGGCTGCAGAACCTGCACCTCCTGAC
Guinea pig Unknown ---------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_136184:5587-5714 + ACGGGGAGTACTGGCTGGGTAAGGTGGGGCCGGGTGGCCTGGGTGGGGGCTGCC-TGAAGCCAGGTCCTTGCTGAGCAGGCTGCCTCCTCCTCCTCCCCCCCAGGGCTGCAGAACCTGCACCTCCTGAC

uc007jto.12 (chr11:69826804-69826869 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr11:69826779-69826894 - --------------------------------**----*----***----------------***-----------------------------------#########################
CTGCTCACGGTGTTACAAGGAACTGCCTGGGG--ATGA-GGGG---GTGCAACTCTGGTGGT---CAGGATCCCCAGTGAGCCCGTTCTCTCCCCCACAGGGCAGGCTTTGGCTGCTTTCTGCCT
Rat chr10:56859310-56859427 - CTGCTCATGGTGTTACAAGGAACCACCTGGGGGCATGACAGGG---GGGCGACTTTAATGGT---CACGATCCCCAGTGAAGCAGTTCTCTCC-CCACAGGGCAGGCTTTGGCGGCTTTCTGCCT
Guinea pig Unknown -----------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_188687:6560-6680 - TGGCCAGAGGCG-TGCAGGGGACCAGTCCCCGGCAGGAGAGGGCTGAGGGGACTTGGATGGCTGGCGGGACTTAGGGTGAAGGCATTCTCT---CCACAGGGGAGACTTTGGCAGCTTTCTGTCT

uc007jto.7 (chr11:69825101-69825185 -)

mirtron_candidate

Species Coordinate Alignment
Mouse chr11:69825076-69825210 - #########################%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%*%%%%%%%%%%%%%%%%%%%%%%%%%%%%%*%%#########################
CGCCATCAGCAAAATCTTTTGCTCGGTGAGGACCCAGGTGTGATGGGAGGGCGGAGTCCAGATTAGGACCTCAGCTCAA-AAATCCAACTCATCTGGTTCTCTGTCCTC-AGGAGGCGGCCTGGAAAGTGGCAGATG
Rat chr10:56857577-56857709 - TGCCATCAGCAAAATCTTTGGCTCGGTGAGGACCCAGGCATTATGG-AGGGCAGAGTCCAGTTTAGGACCTCAGCTCCAAAAAATAAACTTCTCTGCTTCT--GTCCTC-AGGAGGCGGCCTGGAAAGTGACAGATG
Guinea pig Unknown -----------------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_188687:4738-4865 - CGCCATCAGCAAGATCTTTGGCTCGGTGAGGTCCCAGGCGTGCTGG-GAGGGAAAGTCCAATGTGAGGACGCAGCTCTAAG------TCATCTCTGGCTCT--CTTCTCTAGGAGGCAGCCTGGACGGTGACGGACG

uc007jup.6 (chr11:70210437-70210505 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr11:70210412-70210530 - ##############------------------------------------**---------------------**-----------------------#########################
GCCCTGATCCTTGCGTAAGTAAACTTGGTCATGGTGTGGAGAAGGGAACG--AACATACTGGAAATGAAGGCC--ACCGTTCCGTCCTCTGCCCCTAGGTGTGGAAGTCGACTTTTGCGTTTT
Rat chr10:57223794-57223910 - GCACTGATCCTTGCGTAAGTGAGCTTGGTCATGGTGTGA---AGGGAATT--AGCATACTGGAAATGAAGGCCACACTGTTCCATCC-CTGCCCCTAGGTGTGGAGGCCGACTCTTGCGTTTT
Guinea pig scaffold_236947:5407-5524 - GCTCTCATCCTCGCGTGAGTGGACTCGGGCAGGGTCTGAAGAAG-GATCTGGGGCATGCCG-ATGTGAGGGTC--ACCATCCCATCT-CTGCCCCCAGGTGTGGAGGCCGGCTTTTACGCTTT
Rabbit Unknown ---------------------------------------------------------------------------------------------------------------------------

uc007jwk.8 (chr11:70519330-70519401 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr11:70519305-70519426 + ------------------------------------------------------------------------------------*-------------#########################
GTTGATCGTCCCCTAGCACCCTTGCCGGCAAAGCAGAGGGCACGTGGATCTGATTGATAGGGGAAGGTCTCAATTCCACATTCC-TGTCCTTTGCCAGGAAGGCGCCAACATCAATAAGTCCC
Rat chr10:57585885-57586007 + GCTGATCATCCCCTAGGACCCTTGCTGGCAAAGCAGAGGGCACGTGGATCTGATTGGTAGGGGAAGGTCTCAATTCCACATTCCTTGTCCTTTCTCAGGAAGGTGCAAACATCAATAAGTCCC
Guinea pig Unknown ---------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown ---------------------------------------------------------------------------------------------------------------------------

uc007kck.16 (chr11:74681247-74681312 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr11:74681222-74681337 - ---******************------------------------------------***---------*--------************----------------------------------##########################
GAA------------------GCTAGAGAGGGCCAGCATAGGAGCTGGAAGGTTACA---TCCTAAGGC-AGCTTCCC------------AGGGCGGGGGCCTGAGCTGTGACTCTCCTGGCAGATCCGGAAGCGCCACTCTAGTGGGAG
Rat chr10:62183976-62184110 - AAAGA------------GTCAGCTAGAGAGGGCCAGCATGGGAGCGGGAAGGTTAGG---TCCTAAGGCCAGCTCCCCCCCCCCCGGGGTTGGGGGGAGGCTTGAGCTGTGACTTTCCTGGCAGATCCGGAAGCGCCACTCTAGTGGGAG
Guinea pig scaffold_240899:2337-2452 + AAAGGGACGGG-----GGTCAGAGATTGAGAGTCAGCACGGAAGCCTGAGCATTgTg---tt--------------------------GTggtGggTGGttgTGAGCCATAGCTTTCCTGGCAGATCCGGAAGCGGCATTCTAGTGGCAG
Rabbit scaffold_209496:47103-47238 - GCAGACCCTGGTGTTGGGTCAGCCAGAGATGCTCAACAGAGAAGCCTGAGGGTTCTCCAGCCCCAAGTG-GGATTTCC------------CAGGCTAGCGGCTGAGCCATGGCTCTCAT-ACAGATCCGGAAGCGGCACTCAAGCGGCAG

uc007keo.15 (chr11:75479242-75479338 +)

mirtron_candidate

Species Coordinate Alignment
Mouse chr11:75479217-75479363 + #########################---------------------------------------------------------------*-----*----------------------*-------#########################
CCTCCTCTTCCGGAACCTGAAGGAGGTGAGGGAGACAGGCGAACTGGGGTGGGGTGGGTACCCACAGCTCTGTGTGCATCTCTGACTT-TATGC-TCAACCCTGACCTGTCTTCTGC-CTCACAGACCATGTGCAGCTCAATGAACCCCA
Rat chr10:62999783-62999929 + CCTCCTCTTCCGGAACCTGAAGGAGGTGAGGGAGACAGGTGGACTGGGGCGGGGTGGGTACCCACAGCTCTGTGTGCACCTCTGACTT-CATGC-TCAACCCTGACTCCTCTTCTGC-CTCGCAGACCATGTGCAGCTCCACGAACCCCA
Guinea pig Unknown ------------------------------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_174741:41223-41360 + CCTTCTCTTCCGGAACTTGAAGGAGGTAAG-GACACAGCGGGGCTCAGGTGT---GGG--------GCTCCGTCCGCACCTCTGCCCAGGAAGCGGCCACCCTGACCCCTGCTCTGCCCTCACAGACCATGTGCAGCTCGAAGAATCCCA

uc007kip.22 (chr11:78039600-78039681 -)

mirtron_candidate

Species Coordinate Alignment
Mouse chr11:78039575-78039706 - #########################----------------------------------------------------------------------------------#########################
AGCTGGCCAAAGATTACGTGTGCAGGTGGGCATGCAGTAGTGGACCAGCAGGAGGGGTGACCCGGATGAGACACCCTCATCCTGCAGCTCCACTGTTGTCCCCACAGCCAGTTCCCTACACCAGAAGCTGTG
Rat Unknown AGCTGGCCAAGGATTACGTTTGCAGGTGGGCATGCAGCAGTAGACCA------------------------------------GCAGGAACACTGTTGTCCCCACAGCCAGTTCCCTACACCAGAAGCTGTG
Guinea pig Unknown AGCTGGCCAAGGATTATGTTTGCAGGTAGGCGTGTAGAAGAA---------------------------------CATAGCTGGCAGGAACACCATTTTCTCGACAGCCAGTTCCCTACTCCAGAAGCTGTG
Rabbit Unknown AGCTGGCCAAGGATTACGTGTGCAGGTAGGCATGCAGCTGGTGGCTG------------------------------------GTGGCAGCACCATTTTCCCCACAGCCAGTTCCCTACTCCAGAAGCTGTG

uc007kkf.10 (chr11:78846886-78846948 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr11:78846861-78846973 - ---****------------------------***-------------------------------------------------------------####################***#####
AGG----GGGTGGAAGGAGGGCGGGCGCCCC---AGGTGGCAGAGGCTGAGTTGAGCTTGCAGCCTTGCTCATCTCCGCATCTCTGGCCTTGCAGGAGCACCCTCCAGCCATGAA---CCTGG
Rat chr10:65205181-65205289 - GGGTGGGAGGTGGAAGGAGG------ACTCCAGCAGATGGCAGCCGCTG-----AGCTTGTAGCCTTGCTCATCCCAGCATCTCTGGTCCTGCAGGAGCACCCTCCAGCCATGAA---CCTGG
Guinea pig scaffold_102499:757-859 + GCG----GG----A---AGG------GCCCC---ATGTGGAGGCAGCTGGCCGCACTGCCCCGCCCTGCCTACTTTCACATCTCTGGTCTTGCAGGAGCACCCTCCAGCTGTGAACCACCTGG
Rabbit Unknown ---------------------------------------------------------------------------------------------------------------------------

uc007kpj.2 (chr11:83389949-83390016 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr11:83389924-83390041 - -------*-------------**--------------------------------------------------***-*****----**-----------****-------#########################
AGAGCCT-TCTCAGCCTTGGC--AAGAATCGGGGTGGGGATGGTGAGTAGAGATGCTAAGACAATGATGCTAA---C-----CTCT--GCCCTCTGTCT----CTTCCAGCAACAGAGACAAAAGAAGTCCAGAG
Rat Unknown GGAGTCTGTCTCAGCCTTGGC--AAGAATGGGGGCTAGGATAGTGAGTGGAGATGCTGAGACGCTGATGCTGA---C-----CTCT--GCCCCCTGTTT----CTTCCAGCGACAGAGACAAGAGAAGTCC----
Guinea pig Unknown ---------------------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown AGAGCCT--------CTTGGCCTCAGGATGGGGGTGAGGGGGGTGAGTACAGACCCTGAGACACTGCTGCCTCCAGCCATTTCTCTCCCCACCCTGTCTCTCCCTTCCAGATACAGACACAAAACAGCTCG----

uc007ksx.3 (chr11:86478292-86478356 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr11:86478267-86478381 - ------------------------------------------------------------------------------------------#########################
CAGCAAGGTGGGTCGATTTTTTTTTTTCTTTGAAAACGGTAGCACAGATGTTAGGAATTCTCCTTTAACTTCCATGCTGTTGTTTTTCAGACCCCTCTTCAGTTCATGAGAAGAA
Rat chr10:74946591-74946663 - C------------------------------------------ACAGACCTTAGGAATTTCCCTTTAACTTCCATGCTGCTGTTTTTCAGACCCCTCTTCAGTAAATGAGAAGAA
Guinea pig scaffold_279214:170813-170924 - -AGGAGGATGGGTGtgTTTTTttttTttTTgtGttGGGTGAAGCTAAATGTTAAGAATTCTGTTTTAACTTCTGTGCTGTT--TTTTCAGACCCCTCTTCAATttGTGttttGtt
Rabbit scaffold_172477:38955-39069 + TGGGAAGGTAGGTGAATTTTTAAAGTGATTGGAAAGAGTGAGTATAAGTACTAGGAATTCTGTTTTAATTCCTGCATTATTGTTTTTCAGACCCCTCTTCAGTGAATGAAAAGAA

uc007kyq.19 (chr11:94295447-94295523 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr11:94295422-94295548 - --------------------------------*----------*------------------------------------------------------------#########################
CCAGTGTCGATTCCAGGGAGGCTCACAGAATA-GGGGCACACA-GGAGAAGTGAAGGCCCTTGCAGCCTCTGCTGAGATCATTTCTCCTCTGCTTACCCTGCAGCCAAGTGCCCGAAGCTCCCCGCACA
Rat chr10:83068723-83068836 - CAG-------------GGAGGTTCACGGGATA-GAGGTACCCA-TGAGAAATGAAAACCCTTGCAGCCTCCCCTGAGATCATTTCTCTTCTGCTCACCCTGCAGCCAAGTGCCCGCAGCTCCCCGCACA
Guinea pig scaffold_288250:70268-70378 - CTAGGGT-CATGCCAGGGA-GCACACA--TCA-TGGATGCGTG-GGAGGGGTGT-----------GCCCCTGCTGAGGCTCCC-CCTCTCTGCTCACCCCACAGCCCAGCACCCGCAGCTCCCCTCACA
Rabbit scaffold_213401:111993-112119 + CCAGTAT-GACGCCCCGGAGGCTCACAGGAGACGGGGTGCACCTGGAGGGGCTCAGGGCCCCAAGGCCCTGGCTGAGACCATC-CCCTTCCTCTCACCCTGCAGCCGAGTGCCCGCAGCTCCCCGCACA

uc007ldu.20 (chr11:97048762-97048828 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr11:97048737-97048853 - -----------------*----------------------------------------------*-----------------------------########*#################
CTCGGGGCCGGGGGGTC-GGGCCGAGGTGACCGGGGTGGGGGAGGGGGTGGCCCCTCTGACCCC-GCTGCCTCTCCCCCCATCTCTCCCGGCAGATCGGCTG-GAGCTGGAAGCGGCGCA
Rat chr10:85910546-85910660 - CTCGGGGCCGG-GGGTC-GGGCTGAGGTGACTGGGGTGGGGGAGGGGGTGGCCCCTCTGACCCC-GCTGCCTCTC-CCCCATTTCTCCTGGCAGATCGGCTG-GAGCTGGAAGCGGCGCA
Guinea pig scaffold_272686:11302-11419 - CGCGGAGGTTTCGGGACGGGGCCGAGGTGACCGTGGTGGGGCAGGGGGCCGGCT-CCTGACCCAGGCAGCCGGCCCAACTATCTTCCCCTGGAAAACGGCAGGGAGCTTTAAGCTGC-CA
Rabbit Unknown ------------------------------------------------------------------------------------------------------------------------

uc007lea.3 (chr11:97239190-97239249 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr11:97239165-97239274 + ----------------*---------****---------*---------------------------------------------------#########################
GTTAGCATCTTTTTGG-GGAAGGGAA----GTCTGTCTA-GGGTTGGAGCAGTGTGGATAAACAAGTGGTCTCCATTCTCTTGCCCTGCAGATGCGTTTCCCCGAATTGCTCCCAT
Rat chr10:86103506-86103617 + GTTAGCATCTTTTTTGGGGAAGGGAA----GTCTGTCTATGGGTTGGAGCAGTGCAGATAAACAAGTGGTCTCCATTCTCTTGCCCTGTAGATGCATTTCCCCGAATTGCTCCCAT
Guinea pig scaffold_274759:8094-8200 + GTTAGCATCTCTTTTT-GGG-GGCAG----GTGTGCCTg-ggg-gggAACAGTGGGAGCCAGTAAGTGACC-CTGCCATCTCGCCCTACAGATGCGTTTCCCCGGGTTGTGCCCAC
Rabbit scaffold_203861:122741-122852 + GTTAGCATTTTTTTGG-GGG-GGTGGGAGGGTCTGT-TGTGGTTGGGTGTCGCACAGGTAAACA-GTGACCACCACTCTGTTGCTCTGCAGATGCATTTCCCCGGGTTGCTCCCAT

uc007lec.12 (chr11:97336562-97336637 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr11:97336537-97336662 + -----------------------------------------------------------------------------------------------------#########################
GCTCCGTACAGTTGGATGATGGGAGTCCCTTTAGGGGATGTGGAGCCGGGATTGGAGAGATTGTCACAACCTGATCCCGTTTCCTTCCTCCTGTCCCCTAGATCCGGGATCTCCCAGGACACTACT
Rat chr10:86218245-86218369 + GCTCCCTGCAGTAGGACAGTGGGAATCTCTTTAGCATATGTGGAGGCT-TATTGGAGAGATTACCATAACCTGATCCCTTTTCCTTCCTCTTGTCCCTTAGATCCGGGATCTCCCAGGACACTACT
Guinea pig Unknown ------------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown ------------------------------------------------------------------------------------------------------------------------------

uc007lei.4 (chr11:97528321-97528388 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr11:97528296-97528413 + ---------------------------------------------------------------------------------------------#########################
ACGCCATGCTTAGGTCTTGGGTCCAGGAGGAAGGAGGTGGGGGGCTGCTGTGGTTTGTTTGTGGCTGCACCCTTCTGACCCACTTCTCCTCAGTGCCCAGATGGCTGGCCTGCTGTGT
Rat chr10:86416390-86416501 + GTGCCATGCTCAGATCTTGGGTCTAGGAGGAAGGAGGCGG-GGGCTGCTGTGCTTTGT-----GCTACACCCTTCTGACCTCCCTCTCCTCAGTGCCCAGATGGCAGGCCTGCTGTGT
Guinea pig Unknown ----------------------------------------------------------------------------------------------------------------------
Rabbit Unknown ----------------------------------------------------------------------------------------------------------------------

uc007lkz.10 (chr11:100244553-100244617 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr11:100244528-100244642 - ##************#################################################################################################################
GG------------ATGCCACGGCCTTTGCCTTCCTTCCCTCTGTGGAGGAGGAGCCTGAGGCTATCTGCTCAAGGTCTCACACACTTCCTCCAGGTAGTGGTGACCAAGGCGGCTATGATCGTGAA
Rat Unknown GCTCTGTGGAGGAAAT--------CTTTGACTTCCTTCCCTCTGT--------------------------------------CACTTCCTCCAGGTAGTGGTCACCAAGGCGGCTATGATCGTGAA
Guinea pig Unknown -------------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown G------------------------TCTGACATGCGTCCCTCTGAG-----------------------------------------CCCTCCAGGTGGTGGTGACCAAGGCGGCCATGATTGTGAA

uc007ltw.0 (chr11:103046858-103046934 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr11:103046833-103046959 + ------------------------------------------------------------------------------------------------------#########################
CGATCCCCCTCACTCCAAAAGGCATCTTACTGGTATGAGGAGCAGGAAGCTGGGGGTTGTGGGGAGGGTGTCTGACCCTGCTGCCTCTTCCTCATCCACCAGGCTGACCCCTGCCCACAGCAGGAAG
Rat chr10:92371017-92371137 + CTATCCCCCTCACTCCAAAAGGCATCTTATTGGTATGGAGAACAAGAAGCTGGGGATT------AGGGGGTCTGACCCTGCTGCCTCTTCCACATCCACCAGGCTGACCCCCGCCCACAGCAGGAAG
Guinea pig Unknown -------------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown -------------------------------------------------------------------------------------------------------------------------------

uc007lxq.3 (chr11:105774605-105774670 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr11:105774580-105774695 + -----------------------------------*-------------------****************************-------------------------------*------#########################
AGAGAGAGAGATACTGGTTCAGACAAGCAGTTTGA-AAGGGGCAAGCTGTATCCA----------------------------TTGTACCTGTTAAGTGTTCTGCTTGTTCCTT-TCCTAGGTCCAGTTCCTGGTAGATCATGGGG
Rat chr10:95308729-95308844 + tgtgtATTATAGCCTGGTTTAGACAAGCAGTTTGA-AAGGGGCAAGCTATATCCA----------------------------TTGTACATGTTAACAGTTGTGCTTGTTCCTT-TCCTAGGTCCAGTTCCTGGTGGATCATGGGG
Guinea pig scaffold_295434:37913-38058 + AGAGCTATGCAGCCTACCTAAGACCAGCAGCTACATAAAGGGCAGGCATCAACCAGCTCCCTCAATGAAGCAATGCTGAGCAGTTGCACCTCTTAACTGTTCTGCTTGATCCATGTTGTAGGTCCAGTTCCTGGTGGATCATGGGG
Rabbit Unknown --------------------------------------------------------------------------------------------------------------------------------------------------

uc007mct.3 (chr11:109522533-109522601 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr11:109522508-109522626 + -------------------------------------******--------------***----***************************------***---------------------------------#########################
TTGTAGGCATTTAGCTGTTCACCACCTGATAGGACTG------AGAACCTGAGAGCG---ACTA---------------------------AGGCTT---GGAGTCTAACCCCAGGTCTCTTCTGTCCTGCAGTGACATTTTTGATGCTATGTTTCCA
Rat Unknown --------------------------------------------------------------------------------------------------------------------------------------------------------------
Guinea pig scaffold_291153:36392-36547 + TTTTAAGCCTGTTATTGTTCATCAAGTGACAG--TTGAGCTAAAAAATCTGGGAGTTTTAATTCTAGGTTAGTATTGGAATTTCATAGAAGAGACTTGTGAAATTGTAACACTAGGCTTTCTGTCTTTTGCAGTGATATTTTTGATGCCATGTTTCCA
Rabbit scaffold_198829:53978-54035 - ----------------------------------------------------------------------------------------------------GAAATGTGACATGAGGCCTTCTCTGTCTTGCAGTGATATTTTTGACGCCATGTTTCCA

uc007mim.2 (chr11:115647061-115647128 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr11:115647036-115647153 + ------------------------------------------------------------------------------------*******---------#########################
GCCGGAGGTGGCCATAAGAAATAGGCAGGCCTGGGGCATGAGAGGTAGATGGGAGCTGGCTGGGATACTCACTGCCTGCCTGCC-------CTACTCTAGGAGGCATGGAGAAGCAGCTTCCTGC
Rat chr10:105887923-105888047 + GCTGGAGGTGGCCATAAGATCTGGGGAGGCCCAAGGCATAAGAGGTAGATTGGAGCTGGCCGGGATCCTCACTGCCGGCTCGTCTGTCATGCCGTTCTAGGAGGCATGGAGAAGCAGCTTCCTGC
Guinea pig Unknown -----------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown -----------------------------------------------------------------------------------------------------------------------------

uc007mlm.2 (chr11:116401450-116401509 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr11:116401425-116401534 - -*******------------------------------------------------------------------------------------#########################
C-------TCGGATCTGCGGATCTCGGCAGTGCTCTGGGAGGATGTCAGAGCAGACCACAGACATGAGGCCTCCTCCTGTGACTCCTTCTAGGACCTCTTCTCTGCACTGATCAAGG
Rat chr10:106649432-106649535 - TGCCTTCCTCGGATCTGTG----------CTGTTCTGGGAGGAAGTGAGAGCGGACTCCAGATGCCAGCCC---TCCTGTGATCCCTTCCAGGATCTCTTCTCGGCACTGATCAAGG
Guinea pig scaffold_215898:5468-5502 - C----------------------------------------------------------------------------------TGCTCATAGGACCTCTTCTCAGCTCTAATCAAGG
Rabbit Unknown ---------------------------------------------------------------------------------------------------------------------

uc007mtj.0 (chr11:120440745-120440804 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr11:120440720-120440829 - --------------*-------------------------***----------------------------------------------#########################
GTGAGTGGGCGGGC-CATAGAGTGGGGAGCCATTGGGCCT---GGGAGGGGCGTGCAGCACCAGTAATCCTGCCTCTCCTGTCCCTCAGTTGACAAGACTGACTACATGGTCGG
Rat Unknown GTGAGTGGGCGGGCCCATAGAGCGGGAAGCCAGTGGGCCT---TGGAGGGACTTGTA---TCCGTAACTGTGCCTTTCCTGTCTCACAGTTGACAAGACTGACTACATGGTCGG
Guinea pig Unknown GTGAGTGGGCA----CCTGGGGAGGGAAGGCAGAGGGCCTCCCAGGAGGAGCAGGCG---ATGGCTATTGTCTTCCTTCTGCCCCACAGTTGACAAGACCGACTACATGGTGGG
Rabbit Unknown ------------------------------------------------------------------------------------------------------------------

uc007mxa.1 (chr12:3849573-3849634 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr12:3849548-3849659 + ---------------------------------------------------------------------------------------#########################
AGGAGGAGGCTCATGCCAATCCAGGTAGTCTGGAACACAGTCCCTCTCGGGTCAGCTCTGGCTTACAGGGTGTGTCTGTGTCCACAGGAAGGAGAGGAACAGGAGGAGAACC
Rat chr6:26816396-26816503 + AG---GAGGCCAGTGCCAGTCCGGATAGCCT-GAACACAGTGAGTCTTGGGTCAGCTCTGCCTTACAGGGTGTGTCTGTGTCCACAGGAAGGAGAGGAACAGGAGGAGAACC
Guinea pig scaffold_283000:50100-50209 - AGAGGGAGGCCAAGGCCAGCCGGCCAGGCCTGGAACAAGGTGCCTTCTGGGTCAGCTCTGGCTCACAGGCT--GTCTGTGCCCAcaggaaggagaggagcaggaggagcctc
Rabbit Unknown ----------------------------------------------------------------------------------------------------------------

uc007nux.24 (chr12:73090608-73090665 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr12:73090583-73090690 + ----------**-----------------------------------------------*--------------------------#########################
ATTCCCTGCC--GTGGCCCAGAATCCTTCCCTCTGTGCAGAAAACAAAGTATACTCTAA-CCTAAGAGGACTCTTTCTCTGCACAGCTCAAAGAGCAGCGGGAGAGGGAGC
Rat chr6:94181425-94181533 + ATTCGCTCCCGCGTGCCCCAGAATCCTTTCCTCTATGCTGAAAACAG--TGCACCTTAACCCTAAGAGGGCTCTTTCTATGCACAGCTCAAAGAGCAGCGGGAGAGGGAGC
Guinea pig scaffold_283010:1030-1078 - -------------------------------------------------------------CCAAGACGGCACTTTCTGTTT-CAGCTCAAAGAACAGCGGGAAAGAGAGC
Rabbit Unknown -----------------CCAGAATCCAGCTGCAGTGAC--AAAACAC--AAGGTCTTCACACTAAGAGGCGTCCTTCTATTTCCAGCTCAAAGAACAACGTGAAAGAGAAC

uc007ofw.29 (chr12:86170368-86170432 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr12:86170343-86170457 - -------------------------------*--------**---------------------------------------------------#########################
TGCCTGCCTGACGGTGGTGGGCACTCTTCAC-AGGGCAGA--AGTGAGGTTAGGAGCCTGTTTCTCGGCTCTGATCCCAACCCTTCTGCCCAGCCTCTGTGAACCCCTCGCTGGTGAA
Rat chr6:108879478-108879595 - TGCCTAACTTACGGTGGTGGGCACTCTTCCTAAGGGCAGAAAAGTGAGGTTAGGAGTCTGTTTCTCAGCTCTGATCCCAACCCTTCTGCCCAGCCTCTGTGAACCCCTCGCTGGTGAA
Guinea pig Unknown ----------------------------------------------------------------------------------------------------------------------
Rabbit Unknown ----------------------------------------------------------------------------------------------------------------------

uc007oue.8 (chr12:103641713-103641783 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr12:103641688-103641808 - ---------------------------------------------------------------*-----------**----****-**-----------------#########################
CTTTTTGATGAAGGCATTTCTTCAGAGATGTGGACAGGGGAACAGGAGTGGGAAGCTGTGGCT-CCCTGGCTCAC--CCGC----T--CTGTGCTCTCTTGACAGTGGCCCCCGAGATCATGTCTTCATT
Rat chr6:126678690-126678809 - CTTTTTGATGAAGGCATTTCTTCAGAGACGTGGGCAGGGAAACTGCGGTGGGAAGCGAGGGCTTCTCGGGCTCAC--C------GT--CTGTCCTCTCTTGACAGTGGGCCCCGGGATCATGTATTTGTT
Guinea pig scaffold_167558:82-181 - CTTTTTGATGAGGGCAGCTTTTCAGAGA------AAGGGAAATAGAAGTAGG------------------------TTCTCACTGCCACACTTCTCTCTTGGCAGCGGCCCCCGGGATCATGTGTTCGTT
Rabbit scaffold_186925:38812-38885 - ------------------------------------GGGAAACAGC----------------A-CCCCGGCCCATGTCCTCACTGTG---GCCCTCTCTCGGCAGCGGCCCCCGGGACCACGTGTTCGTG

uc007pex.1 (chr12:113893441-113893501 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr12:113893416-113893526 - -----------**---------------------------------------------------------------------------#########################
AGTGCCCACCC--GATAAGGTCAGTATTGCCCAGAGAGGATGGAGGGATTGGAACCCAGTAGTAACCAGGCCTTCTGTTGCTCCTCAGCTGAGCCCACCTTTCAAGCCCCAGG
Rat chr6:137641207-137641311 - AAT-CCCACCCCTCAGGAGGTCAGGGATGCCTGGAGAGAA-------GCTGGAACACAGTAATAACCACTCCTTCTGTCACTCCTCAGCTGAGCCCACCTTTCAAGCCCCAGG
Guinea pig Unknown -----------------------------------------------------------------------------------------------------------------
Rabbit Unknown -----------------------------------------------------------------------------------------------------------------

uc007pkt.1 (chr13:9494014-9494079 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr13:9493989-9494104 + -------------------------------------------------------------------------------------------#########################
CTGCATGGGGTCGGCAGCTCTGCTCAGCGCTGTAACAAATTTAAAAAAAACTAAAGTCTGAATTAATTAGTTTTTTTTCAACTTGTTACAGCAGCGAATGGAGCTGCCGTGGTTCG
Rat chr17:71610040-71610155 - CTGCATGGGGTCGGCAGCTCTGCTCAGCGCTGTAACAAATTTAAAAAAAACTAAAGTCTGAATTAATTAGTTTTTTTTCAACTTGTTACAGCAGCGAATGGAGCTGCCGTGGTTCG
Guinea pig scaffold_280280:83366-83481 - CTGCATGGGGTCGGCAGCTCTGCTCAGCGCtgtaacaaatttaaaaaaaactaaagtctGAATTAATTAGttttttttCAACTTGTTACAGCAGCGAATGGAGCTGCCGTGGTTCG
Rabbit scaffold_202347:55045-55160 + CTGCATGGGGTCGGCAGCTCTGCTCAGCGCTGTAACAAATTTAAAAAAAACTAAAGTCTGAATTAATTAGTTTTTTTTCAACTTGTTACAGCAGCGAATGGAGCTGCCGTGGTTCG

uc007qhn.31 (chr13:46922150-46922221 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr13:46922125-46922246 - --------------------------------------------------------------------------------------*****-----------#########################
TTTTGAGTTTGTAATCTGAATGTCTAAGTGCTTGGGAGAAAGGAGAATCCCCCAAGTGTGGTAAGATTCACCCACTTGATTCTTCT-----TCCTCCCCTAGGAGCAGGCAGTCTCTGAAAGTCCGA
Rat chr17:23931365-23931489 + TTTTGAGTTTGTAATCTAAATTTCTAAGTGTCTAAGGGAAAGGAGAAGCTTCCAAGGGTGGTAAGAGTCATTCATTTGATTCTTCTTCC--TCCTCCTATAGGAGCAGGCAGTCTCTTAAAGTCCGA
Guinea pig scaffold_235808:134-256 + TTTTGtttTTTTttTgTTtGgTTtTGtGTtTTTTttttGGttGtttttGTTggAACTTTGGTgTGtTTgtTTgtTTg-gTTTTTT---TgTgTgTggTtttGGAGTAGACAGTCTCTTAAAGTTCGA
Rabbit scaffold_172324:3182-3302 + TTTTtTttTTCTAGTCTTAATTTCTGGGTACTTAAGAAGAAAGAAAAGCTTCCAAATTTGGTCTGATTCATTTATTC-CTTTTCT---T--CCCTCCCACAGAAGTAGACAATCTCTTAAAGTTCGA

uc007qrr.3 (chr13:55698133-55698201 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr13:55698108-55698226 + ---------------------*-------------------------------------------------------------------------#########################
GCAGAGTGGGTGGCCCTGGGG-ATCTTTGCAAGCTGGGAACACAGCGGTTCCAGCAGTCTTAGACTACTAAGCCTTGCCGCTTATTTCCCAACAGTGGCGAGAAGAGCGCTTCAGACAAA
Rat chr17:15071499-15071618 - GCAGAGTGGGTGGCCCTGGGGCATCTTTGCAAGCTGGGAACACAGTGGTTCCAGCAGTCTTGAACTACTAAGCCTTGCCATTTATTTCCCAACAGTGGCGAGAGGAGCGCTTCAGACAAA
Guinea pig Unknown ------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_85954:2745-2804 - CCAG-----------------------------CCGGGCAC-------------------------------CTTCTCTGCTCTTCCCTCCGCAGTGGCGAGAGGAGCGCTTCCGGCAGA

uc007qru.3 (chr13:55710001-55710058 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr13:55709976-55710083 + -------------*******---------------------------********************-------------------****------------------------#########################
AGCCTCTGCCTAT-------GGCGGCCAGTAGGACCCGAGAGGAGTG--------------------ACAAGAGAGGCAGCCTGAC----ACCTGCATCCTTTGTTCTCCTCAGCTTTTCCGCCCCTCGGGAATCACAA
Rat chr17:15061115-15061245 - AGCCTCTGCCTAC-------AGCAGCTAGGAGGATCCCAGAGGAGTTAGTGGTAAGGG-CCAAGACTACAAGAGAGGCAGCCTGACTGACGCCTGCATTCTTTGTTCTCCTTAGCTTTTCCGCCCCTTGGGGATCACAA
Guinea pig scaffold_77879:451-585 - GTCCCCTACCTAGGGTTCCTGGTAGGTGGTGGGACCCCAGAGAAGCTAGTGGTGACAGCCCAGGGCTCCAGGAGGTGTGGCCTGAC----CTCTGTTTTCCTCCGTCTCCTTAGCTTTTCCGCCCCTCGGGAATCACCA
Rabbit scaffold_175369:38800-38912 + CTC---------C-------AGCGGACACTGGGACAT--GAGGAGCTCATGGTA-GGG-CCAGGACTCCAGTAG-GGTGGCCTGAC----GAC-GCTGTCTATGGCCTCATTAGCTTATCCGCCATTCGGGGATCACAA

uc007qvf.7 (chr13:59890887-59890947 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr13:59890862-59890972 - -------------------*---------------------------------------*---*************-------------------------#########################
TTTCATATTAGTTCCTCAA-GAAGTGGTGGTAATGGGGTGACTGCAAGCTGAGTAGAAA-CAC-------------CCTTCAGAGTGCTCTCTCCCTCTAGATGTGTGACATCGGTGACGCGTCCA
Rat Unknown TTTCAAGTTAGTTCCTCGATGAAGTGGTGGTGATGGGGTGACTGCAGGCTGAGTAGAAA-TGC-------------TC------GTGCTCTCTCCCTCTAGATGTGTGACATCGGTGACGCGTCCA
Guinea pig Unknown TTCTTAATGAGTTCCTCAAATAAGTAGTGAGAATAGGTTGGCCACAAGTTCAGCAGGAAGCACTGGTGATCTTTCC--------ATCTTCCTTTCCTCTAGATGTGTGACATTGGTGATGCGTCTA
Rabbit Unknown CTCAGCATAAGCACCTTAGC--TTTAGTGGTAACAGAATGGCTGCACATTCAGCAGAAAGCACTGATGGTGTTCGCTG------GTTTTCCTGCCCTCTAGATGTGTGACATTGGTGACGCGTCCA

uc007rrc.5 (chr13:101397801-101397858 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr13:101397776-101397883 - -----------------------------------------------*--*********--*--------------------------------#########################
ATTAATATAACTAAAGTATTGAAAATGAGCATATGAAAGCGCTGTGA-TT---------AT-AAAGATTAGTAATCGCAGATATTCTTTCATAGGAGCGCCTTTAACAGAGTTAGACTC
Rat chr2:31433665-31433757 - ATTACTATACCTGAAGTATTGAAAG--------------CGCTGTAA-GT---------AT-AGTGACTGGTGA-CGCAGGTACTGTCTTACAGGAGCACCTTTAACAGAGCTCGCCTC
Guinea pig Unknown ATTA-TGTGTCTGAAGTtTTGtttt--------------TGTTgtttTGttttTtTttTTtgttGGATTAGTttTTgTAGAAAT-TTTTTATAGGAGCACCTTTAACAGAATTGGACTC
Rabbit scaffold_81097:6910-6933 + A-----------------------------------------------------------------------------------------------GCACCTTCAACAGAATCAGTCTC

uc007sru.9 (chr14:26698513-26698569 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr14:26698488-26698594 + ------***-******-----*********------------------------------****------*----------------------------------#########################
TGGGCT---C------AGATG---------CTGCCTAGGTGCTCTGAGCCTGGGACCTGG----AGGATG-CTTGCTGGACACATGCATCTTCCTTCTCCTCCAGGAGCTGTATGCAGCTGGGGAGAACC
Rat chr16:1489031-1489146 + GGGGCTTTACAGAGCTAGATG---------CTGCCTGGGTGATCTGAGCCTGGGACCTGG----ATGATG-CTTTCTGGACACAATCGTCTTCTTCCTCATCTAGGAGCTGTACGCAGCTGGGGAGAACC
Guinea pig scaffold_241851:4377-4491 + GGGGCC--ACACATGCATACC---------TCTCCTGGCTGACCTAGGCCCGGGGCCTGG----GACATGACTGGCTCTGTATATACATCTTCCTCCTCATGCAGGAGCTGTATGCTGCCGGGGAGAACC
Rabbit scaffold_195816:1145-1271 - AGACCT--GCAGAGCCAGCCTCTACCCAGCTTTTCTAGGTGACCTGGGCTCGGTGTCTGGGCCAAGGAGG-CCTGCGTTGCATGTGTGTCTTGCTATCTGTCCAGGAGCTGTATGCAGCCGGGGAGAACC

uc007ubs.0 (chr14:56824356-56824429 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr14:56824331-56824454 - ------------*---------------------------------------------------------------------------------------#########################
GTCCTGATCTAA-AGTTAGCCTTGCCAGGAGGAGGTGGGGAGAGCAGAGCCTGATGGACCCAGACTCACCAGGCTAAGTTCTTCCTTTCTCCACCCACAGGGTGACTCCGGGGGACCCCTCGTGT
Rat chr15:34696473-34696587 - GCCCTGATCTAAGAGTTAGCATTGCCAG-AGGAGGAGGGGGAAACAGAGACAGAGGGAGGCAGCCTCAC---------TTCGTCCTTTCTCTGTCCACAGGGTGACTCTGGGGGACCCCTTGTGT
Guinea pig Unknown -----------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown -----------------------------------------------------------------------------------------------------------------------------

uc007uqm.13 (chr14:75626708-75626779 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr14:75626683-75626804 + -----------------------***--------------------------------------------------*------------------###############################
TAGGTAAGAAGAAAGGCCTACCC---ACTTCCCTTGAGGCAGACAGAAGGAACTCTAGAATAGATTGATAAACCTT-CCCTTTGTCTCTACTTAGGACCCAAAGATCAGTACCAGCCTCCCGGTTC
Rat chr15:56086824-56086891 + A---------------------------------------------------------GATATGTTGGTAAACCCT-CCCTTTTTCTCCATGTAGGACCCAAAGATCAGCACCAGCCTCCCGGTTC
Guinea pig Unknown ------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_207856:70628-70752 + TCCATAAAGGAAAAGAACTGAGCACTGCTTCCTTTGAGTTTTG-GGAAGTAACTTTGGGATGTGCTGGTAATTCTTGCCCTTTCCCTCTGTGTAGGACCCAAAGATTAGCACATGTCTCCCTGTTC

uc007vpm.2 (chr15:43326645-43326709 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr15:43326620-43326734 + ------------------------------------------------------------------------------------------#########################
AAACTCATTAGACCATTTTTAATGGATTATTTTGAAGATGTAATGGTGGTTGCTCAAGTCGTTATTTTGTTTAACCCATTATGTTTTCAGTTTTGTCTTCAGGAATTAAGAAGAC
Rat chr7:79275079-79275193 + AAACTGGTTAGACCATTTTTAATGGATTACTTATGAGATAGAACTGCAGTTGCTCAAGTCATTGTTTCGTTTAACTTGTTATGTTTTCAGTTTTGTCTTCAGGAGTTAAGAAGAC
Guinea pig Unknown -------------------------------------------------------------------------------------------------------------------
Rabbit Unknown -------------------------------------------------------------------------------------------------------------------

uc007vtx.9 (chr15:58800469-58800524 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr15:58800444-58800549 - -------------****-------------------------***************************-------------------------------------------#########################
TGTTGGCAGGGTG----AGAGTATGCTTTCTAGGATAAAGAT---------------------------TGAGCAGGGTGGTAAAATTATTTACTATTCTGCTTTCTCTTAGAATATAAGAAAGCTCGACAAGAGAT
Rat chr7:95919522-95919631 + TGTTTGAACAGTGTCTGAGAGTGTGCTTTCTAGGATAAAGAT---------------------------TGGGCCGAGTGGTAAAATTACTTAATATTCTGCTTTCTCTTAGAATATAAGAAAGCTCGCCAAGAGAT
Guinea pig scaffold_293157:36766-36901 + TATTTACTGCCTGTCAGAGTTTGTGCCTTTTCTGACAAAAGTAGTGGCTATTCCTG-AGTATTTTCTGTTCAGCTTAATTGTAAAGTCACTgttTtTTgTGgTTTtTTTTtGtATATAAGAAAGCTCGCCAAGAGAT
Rabbit scaffold_199318:34778-34908 - TGTTTACTGCATGTCCTACTTGATGCTTCCTGTGATAATGGT------TGCCCCTAAAATACTTTCCGTTGAACACACTGGTAAAATTATTCAATATTCTGCTTTCTCTTAGAATATAAGAAAGCTCGCCAAGAGAT

uc007wif.1 (chr15:75878103-75878164 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr15:75878078-75878189 - ---------*---------*****--*-----------------------*---------------------------------------*-----############*#######*######
TGTGAGCCT-AGCCCCAGA-----CA-GCCACGCCTGCATGGGTAAGTTC-AGGCAGGTCTGGGACCTGCCCTGACCAGCCTGTCTCCCC-ATCAGTCACCAGATTTC-GTGGAGG-AGCTGA
Rat chr7:114078228-114078339 - TGTGGGCCT-AGCCCCAGA-----CA-GCCACGCCTGCATGGGTAAGTTC-AGGCAGGTCTGGGACTTGCCCTGACCAGCCTGTCTCCCC-ATCAGTCACCAGATTTC-GTGGAGG-AGCTGA
Guinea pig scaffold_261233:3214-3336 - TGTGAGCTTCAGAGCCAGGGGGGCCAGGTCAAGTCCATGTGGGTGGTTTTGAGGCAGGTCTGGGATTGGCCCTGACCAATCCTTCTCCCCTTTCAGTTTCCAAATTTTGGTGGAGGAAGTTGA
Rabbit Unknown ---------------------------------------------------------------------------------------------------------------------------

uc007wir.18 (chr15:76019611-76019677 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr15:76019586-76019702 - ################----------------------------------------------------*******************************------------------------#########################
AACAGATGTACCGGAGGTATGTACCTTACCTGGGAAGGCTGGGTTAGGAGGTCTGAGACCCGCCTGAC-------------------------------CTCCCAACTCCTGTGCTTCCTCAGGGTGTATCGTCTGCATGAGCGCCTG
Rat chr7:114220726-114220873 - AACAGATGTACCGGAGGTAGGTACCTTACCTGGGAACGCTGGGTTAGGAGGCTCGAGACCCACCTGACTCACCTTCTCTCGAGACCCACCTGACTCACCTTCTCAACTCCTCTGCCTCCTTAGGGTGTATCGTCTGCATGAGCGCCTG
Guinea pig Unknown ----------------------------------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown ----------------------------------------------------------------------------------------------------------------------------------------------------

uc007wjl.2 (chr15:76078816-76078878 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr15:76078791-76078903 + ########----------------------------------------------------------------------*-*---------#########################
TCAGAAAGGTTGGGCCTGGCATATGTGTGGTGTGGGAGGAGCCACAAGGAGGCCGCCAAGGCGGGGCTCTGATTGGCT-C-CTTCCCCAGGTGTTCCTGGTGCTGACCCTGCAGC
Rat chr7:114278788-114278901 + TCCGAAAGGTTGGGCCTGGCAAATGTGGGGGCTGGGAAGAGTCGTGGGGAGGCAGCCGAGGCGGGGCTCTGATTGGCT-CCTCCCCCCAGGTGTTCCTGGTGCTGACCCTGCAGC
Guinea pig scaffold_284055:838-942 + TCCGCAAGGTGGGACCTGAC---TGT--GGGCTCGGGGG----CTGGGTGAGTGACTGGGGCA-GGCCCTGACTCCCCTGCTCTCCCCAGGTGTTCCTGGTGCTGACTGTGCAGC
Rabbit scaffold_138473:25-73 + ----------------------------------------------------------------GGCTCTGAGGCGCT-C-GCTCCCCAGGTGTTCCTGGTGCTGACCCTGCAGC

uc007wxe.2 (chr15:81599340-81599413 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr15:81599315-81599438 + -------------------*-----------------------***---------------------------------------*------------------#########################
GGTGGATGCGGTGAGGGCT-GCTGTGCTCAGGGCAGAGGGCTG---GGACTGAGCCAGGCTGGATGGAGACCCGCTTAGTCCCCT-CGGACCTGCCTTGCGCAGGCTTTCCTGCTCAAGCTTGTGCAGA
Rat chr7:120118190-120118291 + TGTGGCTGCGGTGAGGGCC-----------------------G---TAACTGAGCCAGGCTGGATGGAGGCCTGCTTAGCCCCTT-CCTTCCTTCTTTGCACAGGCTTTCCTGCTCAAGCTTGTGCAGA
Guinea pig Unknown ---------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_194022:98179-98303 + GAGGGTGGAGGTGCAGGGCGGA-GTCTCCAGAGCAGAGGGATGTGGAGGCTGGGCCT-GCTGGA--GAAACCCCCTGAGCCCCCCGTGCGCCCTCCCCCAACAGGCCTTCCTGCTCAAGCTGGTGCAGA

uc007wxs.1 (chr15:81778944-81779003 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr15:81778919-81779028 + ---------------------------------------------------------------------------*****----------#########################
TTGTTATCTATCCAATGGCAGTATTGTTGGGGGCCTGGGAATGGCTTTGGAGGCCCCAGCTCCAATCCGTCCTCC-----CTATCCCCAGGACAGCTCGAGCCTCGGCCGGCCCC
Rat chr7:120321258-120321334 + ttgttatctatccaat---------------------------------gaggCCGTAGCTCCAATCCCTCTACC-----CTATCCCCAGGACAGCTCGAGCCTCGGCTGGCCCT
Guinea pig Unknown -------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_102261:135-224 + TGGGCATCTGGGGAG-------------------------GAGGCTCCCCAGGCTCTGGTCCCAACCGCCCCACCCCCACCTGTCTCCAGGACAGCTCGAGCCTCGGCTGGCCCC

uc007xdb.9 (chr15:85069656-85069723 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr15:85069631-85069748 + ----------*------------------------*****--------------*******----------------*---------------*******--------------#########################
TTAGGGGTAG-AGGACCATGAACTGCTGCCATTGG-----CAGAAGGGTGGGAC-------CGCTCCAGTGAACACG-CTCTGAGCTGACTGC-------CCCTCTGTTTTCAGATATCAACGAGTGCCAGCGCTATCC
Rat chr7:123240230-123240353 + CTGGGGATGA-AGGGCTATGAACTGCTGCCATTGG-----CAGGAGGGTGGGACGTGGCGTCACTCCAGGGGACATG-CTCTGAGCTGACTGC-------CCCTCTG-TTTCAGATATCAACGAGTGCCAGCGCTATCC
Guinea pig scaffold_106624:134-234 - GTGACGGAGGTGGGAT---ACAGCCCCGCCGTG--TGTGGCAGG-------------------------------GG-CTCTGAGCTGCGTCCCTCGTGTCTCTGTG-TTCCAGACATCAACGAGTGCCAGCGCTATGC
Rabbit scaffold_49608:1220-1316 - GTGGGGGGAGAAAGACC--GAACAGCTGCCGTTGCTATGGA------------------------------AACGTGTCCCTGAGCCGCCCGT-------CCC--CA-TTGCAGACATCAACGAGTGCCAGCGCTACCC

uc007xfc.1 (chr15:88911725-88911782 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr15:88911700-88911807 + ---------*-------------------*------------------------------------------**********************************************************-------------#########################
TACAACAGG-CTGGAGTGTGCCTGACCTG-TGGGGTGAGGCCGCAGGCGAGTGCTTGAACACTTACTTGAGC----------------------------------------------------------TCTCCCTCTGCAGGCTGACGTGGAACCTGTGGTAACAG
Rat chr7:127385040-127385199 + TACAACAGGTCTGGAGTGTGTTTA---TGTTGGAGTGAGGCC-----CAAGTGTTTGAACACTTACTTGAACTAACTAACTATGtctgtctctctctctctctctctctctctctctctctctctctctctctctctctGCAGGCTGACGTGGAACCCATGGTAACAT
Guinea pig Unknown ------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown ------------------------------------------------------------------------------------------------------------------------------------------------------------------------

uc007xfq.2 (chr15:88987530-88987615 -)

3p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr15:88987505-88987640 - #########################-------------*********************-----------**********-----------------*------------*********-----------------------------------------------*-----------
CTACCTACAAGAAGATGGTGGAGGAGTGAGTGATGTGG---------------------AGGAGGGGCTG----------GGGAATCCCTAAGAGAC-CCCAGGGTCCAG---------CAACCCCCTCTTTCCCATGCACTCACCTCCTCCTGTCTCCATCCACA-CCCCTCTCCCT
Rat Unknown CTACCTACAAGAAGATGGTGGAGGAGTGAGTGATGTGG---------------------AGGAGG-GTTGGGGAACAACTGGGAATCCTTAAGAGAC-CCCAGGGTCCAG---------CA-CCCCCT-TTTCCTATACATTCACCTC---CCATCTCCATCCACAACCCTTCTTCCT
Guinea pig Unknown CCACCTATAAGAAGATGGTGGAGGAGTGAGTGAGCTGGCTGCCAGCAACCCTGGCAGTCAGGAGA-GGCGTGGGTGGTTTGGGAAGC--TAAGGGGTCCCCCCGGCCCAGAGCGCCTCTCAGCCCCTTTTGTC-----------------CCTGTCCCCATCC---------------
Rabbit scaffold_179224:32565-32586 + --ACCTACAAGAAGATGGTGGAGG----------------------------------------------------------------------------------------------------------------------------------------------------------

uc007xvh.3 (chr15:102159074-102159142 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr15:102159049-102159167 + -----------------*-----------------------------------------------**-----------****-------------------#########*################
GAAGTTCTGAGGAGGTG-AGCGACGGGAGCTTAAGGGGAGAGGTGTGGTGTAGGACAGGGTCTCT--CTAGTCTTTCA----TTCACCTCTGCTCTTGCAGACAGCTGAG-GACGCCAAGGACTTCT
Rat chr7:141077855-141077978 + TGTCCTCGGAGAAGGTG-A-CAATGGGAGCTTAAGGGAAGAGGTGTGGCGTAGGGCAGGGTCTCTCTTTAGCCTTTCATTCATTCACCTCTGCTCTTGCAGACAGCTGAG-GATGCCAAGGACTTCT
Guinea pig Unknown -------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_206268:7184-7280 + CGAGGTTGGGGAAGATGCA-GAA--------------------TGTGGTCT-----AGGGTCTCCGGTTAGCCCCTCG----TTCCCCTCTGGTCTTGCAGACCGCTCAGCGGCGCCAAAGACTTCT

uc007xwc.10 (chr15:102334738-102334804 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr15:102334713-102334829 - -----------------------------------------*-----------***-----------********-----******-----***-------------------#########################
TCTCAAAGGAGACCCAGAAATGGCATGGGTAGAAATGTAGG-TCCCAGGTACA---CAAGGCAGATA--------ATTAA------GCTTT---ACCCCTGTCTGGCCCTCAGGGGTGTTTGCACACAGGCCCCCTGC
Rat chr7:141259589-141259701 - CCTCAAAGGAGAACTTGAAATGGCG-GGGTGGGAATGTCGG-TCCCATATGCA---CAAGTCAGATG--------C-TAA------GCTTT---AC--TTGTCTGGCCCTCAGGGGTGTTTGCACACAGGCCCCGTGC
Guinea pig scaffold_90041:2525-2648 + CCCCAGAGGGGACCTCC-CCTAGCATGGATGGGAACTAAGG-TTCCAGGTGCAAATCAAGTCA-ATG--------G-TGAGCTGAGGGTTTCATACCATTATCTG--CCCCAGGGGCGTGTGTACCCAAGCACCATGC
Rabbit scaffold_160311:16884-17014 + TCCCTGAGGACACTTCCAAATGGCATGGGTGGGAAAGGGGGCTTCCAAGTGTG-----AGCCAGGTGGGAGCCAGG-TG-GCCGAAGCCTTCACACCACTGTTTGGCCCCCAGGGGTGTGTGCACCCAGGCCCCCTGC

uc007ypu.14 (chr16:20508968-20509033 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr16:20508943-20509058 + -----------*-------------------------------*****------------*-------------------------------------#########################
GGACTCTGTGG-CCAGAACTGTTTATCTGCTAACAGGAACAGT-----GGGAATGCGTGG-TTCTCTCCTAGCAGCTGTCCCCTCTGCTTCCTTGCAGCTGCAGAGGTTCATCCAGTGGCTGA
Rat chr11:82634968-82635057 - GGACTCTG------------------------------ACAGAACAGTG-GCCTGCATGTTCGT-TCCCTAGCGGCTGTC-CCTCTGCTTCCTTGCAGCTGCAGAGGTTCATCCAGTGGCTGA
Guinea pig scaffold_282382:6542-6643 + GGGCTCTGGtgctgggagct-------------gagggaaaga-----aGAGGTACGTAC-CAC-GCCCTAGCAGCTCTGCCGTGTGCTTCCTT-CAGCTGCAGAGGTTCATCCAGTGGCTga
Rabbit scaffold_174838:47950-48062 + GGAGTCTA--G-TCAGAGCCGTTTACGTGCCATGGGGAATAGG-----AGGGTAACGTGC-CCC-TCCCCAGTAGCTGAGCCCTGCATCTCCTTACAGCTACAGAGGTTCATCCAGTGGCTAA

uc008als.1 (chr17:13162426-13162489 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr17:13162401-13162514 - ------------***------------------------------*-----------------------------------------------#########################
ACGTGTTGATGC---TCCAGTTATTAAATTGTGAGCAAAGGCTAG-AGAGAGCTTTGTCTTCATCTTGTGATGATAGGCTCTTTCCTTTGCAGCCAAACAGGCAAAAAGCTAATGGCG
Rat chr1:41914162-41914273 + ACGTGTTACATC---TCCTGTAAT--AATTGTGAACAAAGGCTGT-AAAGAGCTTTGTCTTCATTTTGTGATGATTGGCTCTTTCCTTTGCAGCCAAACAGGCAAAAAATTAATGGCG
Guinea pig scaffold_285773:4994-5109 + TCATGTTATATTTGTTGCTGTAAT--AATTGTAAGCAAAGAAGGTTATAGGGTTTTGTCTACATTTTGTGATGGTTGGCTCTTTCCTTTGCAGCCAAACAGGCAAAAAGTTAATGGCG
Rabbit scaffold_202741:55370-55483 - ACCTGGTACATCTATCACTGTTGC--GATTGTAAGCGAAGAAGATC--ATAGTTTTGTCTTCATTTTGTGATGGATGGCTCTTTCCTTTGCAGCCAAACAGGCAAAAAGTTAATGGCG

uc008awg.4 (chr17:24614451-24614518 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr17:24614426-24614543 - ---------------------------------------------------------------------------------------------#########################
TAGAAGCAACTCCTTTGAGCAGAGAATGGGGGCTTTTGGTAGAGGCATGGATCAAATCCATTAGAAGCCATGTGTAACCTTAACTCCCCACAGGTCCCGGAACTTGCAGTGTCAGCGT
Rat chr10:13729429-13729546 - TAGAAGCAGCTCCTATGAGAAGAGAATGGGGGCTTCTGGTGGGAGCACAGAGAGCATACATTAGAAGCCATGTGTAACCTTCATTCCCCACAGGTCCCGGAACCTGCAGTGTCAGCGT
Guinea pig scaffold_251938:1017-1107 + AGGAA----------------------GAGGACATTTGGTGGGACACCAACATGCATTCCCTAGAGATAGTGTGTGATA-----CCCTCACAGGTCCCGAAATCTGCAGTGTCAGCGG
Rabbit Unknown ----------------------------------------------------------------------------------------------------------------------

uc008awv.13 (chr17:24709491-24709562 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr17:24709466-24709587 + ----------*--***-----------------****************--------------------------------------------------------------------#########################
CCGTATATGC-CT---GGGTGTGAACACTGTGT----------------CCATGGAGTAACAGGTGCTTGGTGGGGGTTCTGTGAGTAGGAAGTCCCACTTGGGCCTGTCTCCACAGGTGAGTACAACTTGACCGTCCTTGT
Rat Unknown CCGTACATGGCTT---GGGTGTGAACACTGTCT----------------CCATGCAGTAACAGGTGCTTGGTAGAGGTTCTGTGAGT-GA--ATCTCACTGG-GGCTGTCTCCACAGGTGAGTACAACCTGACCGTCACTGT
Guinea pig Unknown CTATACACATGTCCAAGGGGATAGCTATTTATGCTTTGAGGAAGCTGCCTCATGAAACATGAAGTGCTAGGTGGAAATTTAGCCATCAGG--ACCCCACTCAGGCCTCTCCCTGCAGGTGAGTACAACCTGACTGTCCTCGT
Rabbit scaffold_104247:4530-4627 - CCACGCGTGCACT---GCGGACGGGCACCCTCT----------------GC--TCGGCACCGGGCGCCAGGCAGGGGCTCTGG-----------------------TGTCCCCACAGGCGAGTACAACCTGACCGTGCTGGT

uc008azq.6 (chr17:25241617-25241677 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr17:25241592-25241702 - ---------------------------*----------**********---------------------------------**---------################################
GGTGGCCCCATTCTGGGCCCCGATTAG-CCCTTGGGTA----------GTCTTGGAGCTTTAGCACAGTGGCTTCTCCTTT--TCTACCCAGGTAGCCAAGTATCTGACCTCACAGTTCTATGG
Rat chr10:14353247-14353358 - GGTGGCCCCATTCTAGGCCCCGATCGGGCCCTTGGGTA----------GTCTGTGA-CTTTAGCACAGTGGCTTCTCCTTTG-TCTACCCAGGTAGCCAAGTATCTGACCTCACAGTTCTATGG
Guinea pig scaffold_208644:48673-48795 - GATGTCCTACTTTTGTGCCTGGGTTGG-CTGTGTGGTACCTGGAGGACATCTGGGGTCCAGGTCCAAGTAGCCTCTCCTTTGCTGTGCTCAGGTGGCGGAGTATTTGACCTCACAGTTCTATGC
Rabbit Unknown ----------------------------------------------------------------------------------------------------------------------------

uc008bco.5 (chr17:26056495-26056557 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr17:26056470-26056582 - ---------------------------------------------------------------------------------############************####################
AGCGGGGCGGGTGCACTGGGGGCGGTGGCCAGCGGGCGGGAGCATCAGCGTCCTGACCGCACGGCCGCTCACCAGCCTTCGCCCGCAGGTCTG------------GCGGCGGTGCCGTGGGCCGC
Rat chr10:15181672-15181784 - AGCGGGGTGGGTGCACTGGGGGCGGTGGCCAGTGGGCGGGAGCATCAGCGTTTGGACCGCACGGCCGCTCACCAGCCTTCGCCCGCAGGTCTG------------GCGGCGGTGCCGTGGGCCGC
Guinea pig scaffold_153925:4143-4260 + GGCCAGGTGAGAGCGCCGTGGGCGGCGGGCGGT---CACGCGCCTTCGTGTCCTGCTGGGC--GCCGCTTACTTGCCTCCGCCCGCAGGTGgGGgGGgGGgGGTGGgGGgGgggTgGtGg--gGg
Rabbit Unknown -----------------------------------------------------------------------------------------------------------------------------

uc008bdv.8 (chr17:26355264-26355335 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr17:26355239-26355360 - -----*---------*************----------------------------------------------------------------------*-------------#########################
ACGGG-CTGTCATGT-------------GCCTGAGACACAGAATAAGGAAGACAGGAGGTGGCATGCGATAGTTTGAGACTGACCAAGTGGCTGCCAC-CTCTACCTTCCAGGCTTTTCCACTCCTTGTGCCTTTGT
Rat chr10:15484904-15485018 - ATGGG-CTGTCATGT-------------GGCTGAAGCACAGGAGGCGGAAGACAGGAGGCGGCAGAACACAGTCTCAGACTGACCAAATGA--------CTCTACCCTCCAGGCTTTTCCACTCCCTGCACCTTTAT
Guinea pig scaffold_276576:634-719 + ATGGG-CC-----------TGGGTACAGGGCTGGGGCA------------GA-----------------TGGTCTGA-------CAGGTGGCTATGGGTCT---CTTTCTAGGATTCTCTTCTCCCTGTGTCTTTAT
Rabbit scaffold_150008:3381-3483 + GAGTGAGCGCCCCGCAGTCTGAGTTGGGGGAAGGGGCG------------GGGGGGCTGCGG-----------------CTGCACG-CTGAGTGCCCC-GTCTCCCTTCCAGGATCGT---CTGCCTGTGCTTTTGT

uc008bfm.0 (chr17:27327736-27327793 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr17:27327711-27327818 - ----------------------------------------****-------------------------------------------#########################
TGGTAGAGCTTAGGAATGCCCGCCCCTCTGTGGGAATGGA----GTGGTTCAGCCTGACCCAGCTGAGCGCTACCTTCTCCTTTCAGGCGGCGCATGAAGCGAGTATGGGAC
Rat Unknown CAGTAGAGCTGA--------CTCACCCCTGTGGGAAGGGCAGCCGAGGTACCATCTGCCCCTGCTGAGCTCTACCTTCCCCGTGCAGGCGGCGCATGAAGCGAGTATGGGAC
Guinea pig scaffold_202636:3506-3541 - TCTT----------------------------------------------------------------------------GTTGCAGGAGGCGCATGAATCGGGTGTGGCAC
Rabbit Unknown ----------------------------------------------------------------------------------------------------------------

uc008bwp.6 (chr17:32499909-32499971 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr17:32499884-32499996 - ----------------------------------------------------------------------------------*------#########################
AAGAAGTACCTACCGTTCTCTCAGTCTCCTTCTTGGGGTGGACAGCCTGACTCATGAGTGGGCTGAGCCTGTCTCCTCCACC-CCACAGGCCTGTGTTCTGAGGAAAACACAAT
Rat chr7:12933059-12933167 - AAGAAGTAC----CATTCTTTGAGTCTCCTTCTTGGGGTGGACAGCCTGACTCATGATTGGGCTGAGCCTGTCTCCTCCACC-CCACAGGCCTGTGTTCTGAGGAAAATACAAT
Guinea pig scaffold_272774:687-785 + GGGAAGCAC----CGTCTTG------TTCTCCTGGGAGCAGACAGCCTGACTC-----TGGCCTGAGTCTGTCTCTTCCATCTCCACAGGCCTAGGCCCTGAGGAAAACACCAT
Rabbit Unknown ------------------------------------------------------------------------------------------------------------------

uc008bwu.15 (chr17:32536375-32536427 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr17:32536350-32536452 - ----------*-------------------------------------*-------------****------------------#########################
TGTGCACCTT-CATGTATGAAGAAGGGGGTTAGAGGGAGAAGAGGAGA-CTCTGAAATCAGC----ATCTCCTCTTCTTCCCAGAGCCAGAGCTGGAGTTGGTAGCAGA
Rat chr7:12964937-12965038 - TGTGCACCTTTGCTGCATGAAGA-GGGGGTCCAAGGGCGACGGGGAGA-CTCTGAAATCCCC----AT-CCCCCCTCTTCCCAGAGCCAGAGCTGGAGTTGGAGGGAGC
Guinea pig scaffold_249483:399-490 + GGGGCACCTCAGAAGCCTT------CCGATCAGAGATGGGAGGGAAGAGCCCGGAGGTCCCCCAGTAACCCCTCCTCTTCCCAGAGCCAGAGCTGGAG-----------
Rabbit Unknown -------------------------------------------------------------------------------------------------------------

uc008cae.0 (chr17:34056742-34056815 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr17:34056717-34056840 + ----------------------------****-----------------------------------------------------------------*------#########################
GGAGAGGGAGGAGGTCCCATGGCGGGTC----TGAAGGGGCGGGCCGGTCGCCGGTCGCCGGACATCCTATGGCCCTCTGGTCACCGGAGCCCCTCT-CCCCAGGCCTAGCGACCGTCGTCTCCGTCGT
Rat chr20:5117542-5117651 - GGAGAGGGAGGTGATCCCATCGCGGGTC----TGAAGGG-CGGGCCGGTC--------CCGGACACCTTGTGGCAGCCTGGTCACCGGAGCCCCTCTTCCCCAGGCCTGGCGACCGTGG------TGGT
Guinea pig Unknown ---------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_172711:9912-10018 + ATGGAGGGAGGCGGTTGCATCCCGCTCCAGGGTGAAGGG-TGGGT-----------CACCCGACGTCCCG-GCCGCCCCTCTCACTCGCGCCGCTCTCCCCCAGGCCTGGTGACCCGC---------GT

uc008cds.0 (chr17:34976569-34976638 -)

3p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr17:34976544-34976663 - ############################------------*-----********--------------------*------------------------------------------------#######
GGTTGTGTATGAGTGGGCTAGGGGTATGGTAAGTGCCGGG-TTTGG--------CAGTTGGCTGGTTGGGAGAA-GCCATGCAAGACCTGGCACATTTAGTCTTCACTCTGCTCTTCCCATAGCCCTTCT
Rat chr20:4093189-4093302 + AGTTGTTTATGAGTGGGCTCGGGGTATGGTAAGTGCCTGG-GTTGG--------CAGGGGGCTGGCTGGGAG---GTCA-CCCGGCCCAGGCACATTT-GTCTTCACTGTGCT--CCCCACAGCCCTTCT
Guinea pig scaffold_279385:39506-39624 - GGTTGTGTATGAGTGGGCCCGGGGCATGGTGAGTACCCAG-CTGTG--------GGGTGGGCTGCTGGGGAGGG-GCGG-CACAGGCCAGGCACCTCGGGTCCTTACTCTGCCTTCCCTGCAGCCCTTCT
Rabbit scaffold_195381:44680-44808 + GGTTGTGTATGAGTAGGCCCGGAGTATGGTGAGTACCTGGGCTGTGGGATTTTGCAGATGGCTGGACGAGGAAAGGCTG-CCCAGGCCTGACACATCCAGTCTCCATCATGCTCTCCCCACAGCCCTTCT

uc008cie.3 (chr17:35794264-35794335 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr17:35794239-35794360 - -------------------------------------------------------------------------------------------------#########################
GTGTGCACACTGCTGAGGAGATGATGGAGGTGGAGAGAGGGTAGAGCCAGGAGCATCAATGCCCAGTTTCTCTGCTGACTCTGCGTTTCTTCATCAGGAGTTCTGGCGCCAGCCAGAGCTGG
Rat chr20:3237464-3237571 + GTGTGCATGCTGTTGA---GACCAGGGAGG-GGAGAGAG------GCCAGGAGAATCAATGCGGAGTTTCTCTACTGACTC----TTTCTTCGTCAGGAGTCCTGGCGCCAGCCAGAGTTGG
Guinea pig Unknown --------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown --------------------------------------------------------------------------------------------------------------------------

uc008cjj.17 (chr17:36068024-36068093 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr17:36067999-36068118 + ------*-----------------------------------------------------------------------------------------#########################
ATCTCT-GAACACTTGGCCCCATTGCTCTGGATTGGGGTACGATGGTGATGGTGATCTCTTAGGTGTTTGTAACCATTCTGCCATTGTTCCCACAGACATGTCAAACCGCCCTGTCTGCCG
Rat chr20:2971581-2971684 - ATGTCT-GAGGAC---------------GGGGTGGGAGGGTGGTGGTGATGGTGACCCCTTAGCAGTTTCTGACCTTTGTGCCATT-GTCCCACAGACATGTCAAACCGCCCTGTCTGCCG
Guinea pig scaffold_230780:19497-19578 + CGGGTGGGGGTCCCTGGGGCTGCTGCTTTG--------------------------------------ACTGACTGCCATGTCCTG-TCCCCACAGACATGTCCAATCGCCCCGTCTGCCG
Rabbit scaffold_138864:3036-3070 + G--------------------------------------------------------------------------------------TTCCCACAGACATGTCAAACCGTCGAGTGTGCGC

uc008cua.4 (chr17:46822379-46822448 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr17:46822354-46822473 - ######-------*---------*******************--------------------------------------****************-----------**-----*-------------------#########################
TTCCAGGTAAGAG-CAGACTCAC-------------------TGGTTCCTAGGTTTGGTAGAGCAGGTGTTGAGAATTGC----------------AGTGAGTGCCC--ACTCA-ACTCCACTCTCCTCGCCAGGTGGCGGAGCGCGCCCTCTACTACT
Rat chr9:10056382-10056501 - TTCCAGGTAAGTC-CAGACTCAC-------------------TGACTCCCAGATGTGGCAGAGCAGGTCTTGAGGAGTGC----------------GGGGAGTGCCC--ACTGA-CCTCAACTGTCCCTGCCAGGTGGCAGAGCGTGCCCTGTACTACT
Guinea pig scaffold_232450:6134-6275 - TTCCAGGTGAGGA-CAGACCTACCCTAGCCTGGCAAGGCCTCTGCCTCCGAGAAA--------------CCCAGCAG--CGGGTCCTATACAAGGCACACAGGGCCCCAGAGTTGTCCCACCTCTCCCCACCAGGTGGCAGAGCGTGCCCTCTATTACT
Rabbit scaffold_173098:4277-4410 + TTCCAGGTGAGCCTCCGACCCAG-----CCTGTCCCAGCCCCTGCCTCCCAGAAG--------------CTGAGAAGGGCGGGA------GCAGGCAAGCAGCACCCCCACCAAGTCCCGCCTCTCCCCACCAGGTGGCAGAGCGCGCTCTCTATTACT

uc008cze.3 (chr17:51914744-51914810 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr17:51914719-51914835 - --------------------------------**-------------------------****************************-------****---------*-------------------#########################
AGACTCAAAGCCTCTGACTGCTCACTTTCTAA--AGGGTGAGGCGAAGGCAGGGGCTAT----------------------------GCAGAAC----CTCACCCCA-TGTCTTTCTTCCCCTACAGGGATTGCTTTCTGAAATCCTCCGAA
Rat chr9:3355506-3355647 + AGACTCA--GCCTCTGACTGCTCACTTTCCAA--AGGCTGAGGAAAAGGCAGGGGACATCTACAAACACCTCCAACCCCCAT-CAGGGAGCAAC----CTCACCCTGGTATCTTTCTTC-CCTGCAGGGATTGCTTTCTGAAATCCTCCGCA
Guinea pig scaffold_260844:61879-62017 + AGAACTAATACTTCTGACTGTTAATTCTCCAAGCAGAGTAGAAGAGGGGAAGAGATCACCTGGG-------GCTGGCCAGAGCCCAGGAGCAAA----CTCACCATG-TGCCTTTCCTT-CCTGCAGGGCTTGCTTTCGGAAATCCTCCGGA
Rabbit scaffold_215236:44220-44353 - AGAATGAATGCCTCTGACGGTTCATTTTCTGC--AGAGTGGGGA------AG-GATCTCCACTG-------GCCAGCCAGAG-CATGGTGCAAGCTCACTCACCCTG-TGCCTCTCCTCCCCTGCAGGGCTTGCTTTCAGAAATCCTCCGGA

uc008dap.4 (chr17:56151208-56151288 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr17:56151183-56151313 + --------------------*****************----------------**---------------------****------------**-------------------------------------#########################
GCAAAGGCAGGGCCTGGAGT-----------------CCTTGGCTGCTGAGAG--TACTCAGGACGGGTGGAGGTG----GGAAAGAGCCTG--AGTTCCTAAAGCCCTGGGACCCTCCTGACTACTCCAGGAACCCCCACACTCTGGTAGAAGTA
Rat Unknown ------------------------------------------------------------------------------------------------------------------------------------------------------------
Guinea pig scaffold_67546:1443-1567 + GCGAGGGCGGGGT----GATCCCTGAGCCTCAGAACCCCACAGCTGCAAGGAGGGGGCAGGGAGCTGGTGGAGGGGGTGAGGGAAGAATCTGGGGGTTCCTGAGGC--TGTGACCCTCCTGCC------------CCCCAC-------------CG
Rabbit Unknown ------------------------------------------------------------------------------------------------------------------------------------------------------------

uc008dbx.14 (chr17:56561710-56561807 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr17:56561685-56561832 - -------******----------*---------------------------------------------------------------------------------------------------*-------#########################
CCAGGAG------AGAAGCCTGG-GAGCGGCCCCGGCAGCGGGCATAGACAGCTAGAGGGCGTTAGGCCAGTTGGGGGTCCGGATGTGGCCAGCACTGATGACAGCCCCTCCGCTGCCTCTGT-CCTGCAGACATTTGCAGCCAGTCCCTTCTCAG
Rat chrUn:25351947-25352083 + GCAGAGGAGATGGAGAAGCCTAGTGGGCGGCAGCAGCAGAGGGCA-GGACGGGTGCAG-----------------GTGTCTGGGTGTGGCCAGCATTAATGACGGCCCCTCTCTTGCCACTCT-CCTGCAGACATTTGCAGCCAGTCCCTTCTCAG
Guinea pig scaffold_236054:13650-13689 - C--------------------------------------------------------------------------------------------------------------------CTCTGCACCTGCAGACATCCGCGGTCAGCCTCCTTTCAG
Rabbit Unknown ------------------------------------------------------------------------------------------------------------------------------------------------------------

uc008dcn.0 (chr17:56752944-56753008 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr17:56752919-56753033 + ------------------------------------------------------------------------------------------#########################
CCCCATGGGGAGTCCCTGCGGGCCGGCATGCGGGCGGGCGCGGGCCGAGGTACCGTGTCTCAGCCGCTGTCTTGTCCCCGCTGCCCACAGCCATGGCTCTGCGCTACCCCATGGC
Rat chrUn:25164370-25164480 - CCTcgcggggcgccccggcgg----gcaggcgggcgggcgcgggccgAGGTACGGTATCTCAGTCGCTGTCTTATTCCCGCTGCCCGCAGCCATGGCCCTGCGCTACCCCATGGC
Guinea pig Unknown -------------------------------------------------------------------------------------------------------------------
Rabbit Unknown -------------------------------------------------------------------------------------------------------------------

uc008ddp.2 (chr17:57143477-57143544 -)

mirtron_candidate

Species Coordinate Alignment
Mouse chr17:57143452-57143569 - #########################----------------------------***----------------------------------------#########################
GACCTCCTCTGCACTCTTCATGGCGGTAAGTCAGAGCTGGGGGCTTGAGTAGG---GCCAGTCTGAGCCTTCACACTCATACCCTAATCTCTGCAGAAGAAGAAGACACCCCCAAAGAGGG
Rat chrUn:24760925-24761045 + GACCTCCTCTGCGCTCTTCATGGCGGTAAGTCAGAGCTGGGGACTTGAGTGGGATTGACAGTCCAAGCCTTCAGACTCACCCCCCAATCTCTGCAGAAGAAGAAGACACCCCCCAAGAGGG
Guinea pig Unknown -------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown -------------------------------------------------------------------------------------------------------------------------

uc008duj.7 (chr17:87223675-87223746 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr17:87223650-87223771 + ---------------------------------*----------***************------------------------------------------------------#########################
GGTTTATCTACCAGGCTTCTGACATGTCTGGGG-CGGGAGAGCC---------------AAAGGCTTTTGCTAAAAGATGCAGATACTCTGAGCCGCTCTCTCTTCCCATCAGTGAGATCGAGAAGAACGACGTGGTG
Rat chr6:10290302-10290419 + GGCTTAGCTGTCAGGCTTCTGACATGCCTGGGG----GTGAGCC---------------A-AGACTCTTGTTAAAAGACGCAGATGCCCTGAACAGCTCTCTCCTCCCATCAGTGAGATAGAGAAGAATGACGTGGTG
Guinea pig scaffold_223436:9771-9891 + GACTTGGCCCTCAGTTTTCC--CTTCCCTGAGTCCGAGGGAGCC---------------AAAGAATTTTGCTAGAAAATATGGAAAGTCTGAATGGCTCTCTTGTCCCATTAGTGAGATTGAGAAGAATGATGTGGTG
Rabbit scaffold_172732:16978-17084 - ---------------------------CTAGGG-CGGAA---CAAAGAACAGCTAAGGAAAAGGGTTTTGCTGGAAAAGCTGGGCGATCTGACTGGCGCTCTTGTCCCGCCAGCGAGATCGAGAAGAACGACGTGGTG

uc008edx.10 (chr18:16802584-16802648 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr18:16802559-16802673 - --------------------------******************-------------------------------*****************--------*-------------------------#########################
CTGTCCTCAGGATGCTCTGGCTACTG------------------TGGACGCGTGGTAACCACAGGTGACAGATCT-----------------TCAAGTGC-CTCTGCCCTCTGGTTGCTTTTGCAGTTGAGAGCACATGCAGTGGACATCA
Rat chr18:8102876-8102998 - CTGTCTTCAGAATGCTCTTGCGACTGTGACACACATGTACA-----------TGGTGACCACATGTAACAGATCC-----------------TTAAATGCCCTCTGCCCTCTGGTTGCATTTGCAGCTGAGGGCACATGCAGTTGACATCA
Guinea pig Unknown -------------------------------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_180080:65248-65379 - CAGTTCTCAGTCTATTGTTACTCTTTCAATAC-------CACTATGATTGTAT-----------ATTTTATCCTCCTAAAGATGTAAGTCTGTTAAGTAG-TTTTGTTTTCTACCTATTCTTGCAGTTGAGGGCACATGCAGTAGACATTA

uc008fxq.7 (chr19:3921808-3921869 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr19:3921783-3921894 - -----------------------------------------------------------------------------------****----#########################
tTGttTGttAGGATAAAGAGATGCAGGACCTACAGGAAGGAAGTGATACCGGCCCAATTCGGCCCTGACTCTCATTCCTTTCT----GTAGTCAGCCTTCGAGGCCGAGGTGTCTG
Rat chr1:206446986-206447101 - tTGttTGttAAAATAAAGAGATGCAGGACCTACAGGAAGGAAGCAATACCTGCCCCATTCAGTCCTGACCCTCATTCCTTTCTGTATGTAGTCAGCCTTTGAGTCGGAGGTGTCCG
Guinea pig scaffold_98345:943-1001 + CCAG------------------------------------------------CCACTTGCTGACCTGGTCCT-----CTCCCC----ACAGTCAGCTTTTGAGTCTGAGATATCTG
Rabbit Unknown --------------------------------------------------------------------------------------------------------------------

uc008fzu.10 (chr19:4290526-4290590 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr19:4290501-4290615 - ############--------******---------------------------------------------------------*-------------#########################
ACCTCATGAACGGTGAGCTC------GGCCCTAGGGGGTGGACCTAGGGCTGGACCTGGGCAGGAAGCTGAGTCTTACCTGGG-GGCTACCCCTCAGGTGGGGACCTGCACTACCACCTGTC
Rat chr1:206876767-206876888 - ATCTCATGAACGGTGAGCTCAGGACCAGCCCTAGGGGGTGGACCTAGGGCTGGACCTGGGCAGGAAGCTGAGTCTCACCTGGGGGGCTGCCCCTCAGGTGGGGACCTGCACTACCACTTGTC
Guinea pig scaffold_269142:21250-21249 - --------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown --------------------------------------------------------------------------------------------------------------------------

uc008gdl.7 (chr19:5480150-5480233 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr19:5480125-5480258 + #########################------*-------------*****-----**--*----------------------------------------------------------#########################
CTGCTGGCTACAAGGCTCTGCCAAGGTACAG-GTGCTTGGGTGGG-----CAGGA--GT-TGAGCGGCTGGGAGCTTACTGTGAGTCCTAGAGTCCAACTCCACCTCCCTTGGCACAGATATTGACGAGTGTGAAACAGGTGC
Rat chr1:208123806-208123939 + CTGCTGGCCACAAGGCTCTGCCAAGGTACAG-GTGCTTGGGTGGG-----CAGGA--GT-TGAGAGGCTGGCAGCTTACTGTCAGTCCTAGAGTCCAATTCCACCTCCCTTGGCACAGACATTGACGAGTGCGAAACAGGTGC
Guinea pig scaffold_289724:2842-2979 + CTGCTGGCCACACGTCTCTGCCAAGGTACTAGTTGCCTGGATGGGACAGGCCGGGTAATATCAGGGGCTGTTGGCCTGACA----CCCCAGATTCCAGCCCCT-CTCCCCTGGCACAGACATTGATGAATGTGAGTCGGGTGC
Rabbit scaffold_84679:5239-5362 - CTGATGGCCTCACGCCTCTGCCAAGGTACGGCCTGCCCAGGTGGGGCAGGCAGGG--GCGTGGGGGGCTGGCGGCCTGACG----C-------------TTCTGCCCCCTCCCCGCAGACATCGATGAGTGTGAGTCCGGTGC

uc008gdr.1 (chr19:5496218-5496275 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr19:5496193-5496300 - ---*--------------------------------------------------------------------------------###****######################
GGA-AGGCTGAGCGATGAAAGCCATGTGGAGGGCCATCAGCAACATCCATGACAATAGCCATCTTGCGCTGCTGATGGCCTTAGGAC----CTGTTGTACCGGCGGCTTCGGG
Rat chr1:208139400-208139504 - AGATACTTTCAGGGATGAAGGCCATGTGGAGGGCTGGCAGCAA-ATCCATGACAACCGTCATCTTG---TGCTGATGGCCTTAGGAC----CTGTTGTACCGGCGGCTTCGGG
Guinea pig scaffold_274448:351-435 - GGGAAGGCCT--------------GGAGGTGGGTGGGGAGGAT-AGACAGG-CCACGGCCAACTCT-GAACCTGAAGGCC-TAGAAC----CTGCTGTATCTGTGGC------
Rabbit scaffold_171178:5970-6023 - AGGCAGCCTA-----------------------------------------------------------AGCAGAGGCCCCTGGGATAGGACAGCAGTACCTGCGGTCACGGG

uc008ger.9 (chr19:5679471-5679569 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr19:5679446-5679594 - #########################-----------------*****----------------------------------------------------------------------------------#########################
TTTTGTGCCCGAGATGTGGCCACTGGTAAGACAGGGCAAGAT-----TGACCCAAGGGAGTGAGTCTGAAGGGTGGGCCCAGGAGAGGCTGGCAGGCTAACTGGTCCTTCACTTCCTACTCCTGGACAGTGTTCACCTTATGCTTTCCGTTCGT
Rat chr1:208302759-208302907 - TTCTGCGCCCGAGATGTGGCCACTGGTAAGGCAGGGCAAGAT-----TGACCCAAGGGAGTGAGTCTGGAGGGTGGGCCAAGGAGAGGCTGGCAGGCTAATTGGTCCTTCACTCCCTCCTTCTGCACAGTGTTCACCTTATGCTTCCCCTTCGT
Guinea pig scaffold_289525:44459-44593 + TTgTGTGgCCGAGATGTGGCCACTGGTAAGACTGGGCAGGGTGGGGGTGGCCCGTGGGT----------------GGTCAAGGCGGGGCCAGT-GGCTGATGGGGCCTTT--TTTCTCCTCCTGGCCAGTGTTCACCTTGTGCTTCCCATTTGT
Rabbit Unknown ----------------------------------------------------------------------------------------------------------------------------------------------------------

uc008gev.4 (chr19:5710698-5710792 -)

mirtron_candidate

Species Coordinate Alignment
Mouse chr19:5710673-5710817 - #########################-------***------------****-----------***---------------------------*--------*-------------------***-----------#########################
CAGCCTGGGGGAAGAGACAGGCCTGGTAAGGA---GAGTTAGGTGGG----CAGAGTTGGTG---TGGTACTTTCTGAGCTGGCCTGGGGTG-AGCTCACC-TGTCCTCTGCCTCCTTCCT---TCCCCTTCTAGCAACGGTTCCAGGACACAAGTCAGT
Rat chr1:208336410-208336560 - TAACCCCGGGGAAGAGGCTGGCCAAGTAAGGAGGAGAGCTAGGTGGGCAGGCAGAACTGTTG---TGGTACTTTGTGAGAGGGCCTGGGATG-AGCTCAGC-TGTCCTCT-CCT---TCCTCTTGACCCTTTCAGCAACGGTTCCAGGACACAAGTCAGT
Guinea pig Unknown ----------------------------------------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_97847:4746-4888 - AAGCCCAGGGGAGGAGGCCGGGCTGGTAAGCA---GGGCT-GGTGGG------GAGTTGATGGATGGGCACTTCCTGGGCGGGGCTCGGGTGGAGCCCGCCCCGGCCTGC-CCC---TCCT---CTCCCTCCCAGCAAAGGTTCCAGGACACCAGTCAGT

uc008ggm.9 (chr19:6050442-6050521 +)

mirtron_candidate

Species Coordinate Alignment
Mouse chr19:6050417-6050546 + #########################--------------------------------------------------------------------------------#########################
CTTGCAACCACATCTTTCACACGAGGTGGGAGAAGGTCTGGGAGACCTGCATCGTGGGCACAGGCTCATGGGGACCTGCTGACCGCTGCCTGATCTTACTCCCAGCTGCCTGCGCTCCTGGTTCCAGAGA
Rat chr1:208687897-208688026 + CTTGCAACCACATCTTTCATACGAGGTGGGAGAAGGTCTGGGGGACCTGCATCTTGGGCACAGGCTCATGGGGACCTGCTGACCACTGCCTGATCTTATTCCCAGCTGCCTGCGCTCCTGGTTCCAGAGA
Guinea pig Unknown ----------------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown ----------------------------------------------------------------------------------------------------------------------------------

uc008ghu.12 (chr19:6250339-6250412 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr19:6250314-6250437 + --------------------------------**********---*-------------------------------------************************---------------**------------#########################
CCCTTTTTATCCCAGGGACACGGATGTGACTC----------TGG-GGGAGCAATGGTGAGGAACAGGGAAGAGGCAGCTATG------------------------AGGCCCTGTCCTTTC--TGTCCCCTCCAGGAATCTACGAAGATGGAGAGAAGCC
Rat chr1:209025306-209025427 + AGCCTTTTATCCCCGGGACACTGATAGGACTC----------TGG-GTGGGCAATGGTAAGGAAAA--GAAGAGGTAGCAGCA------------------------AGGCTCTGTCCTTTC--TGTCCCCTCCAGGAATCTACGAAGATGGAGAGAAGCC
Guinea pig Unknown GGCCTTCTTTCCCAGCCCTATGGACGCTGCTATTGAGTGTCCTGGCCTGGGCAGCA----GGTAGA--GTGGGGTGAGCTGCTGCACCCCATGAGTGTCTGATCTGATGACTCTCACCGTTCCACACCCCTTCTAGTCACCTATGAAGATGGAGAGAAGCC
Rabbit Unknown -----------------------------------------------------------------------------------------------------------------------------------------------------------------

uc008gik.10 (chr19:6374652-6374718 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr19:6374627-6374743 + --------------------------------------**------------------------------------------***------------#########################
TTGGGATCTCTGTCTAGGACTGGGAGCAAATGGGGCTT--CTAGCCCAGGACCCTGCTCTCTAAAGCCCAGGACCCTGGTCT---TACTGCCTGCAGGTATGATGCCGCCGCCGCCTATGGG
Rat chr1:209157017-209157138 + TGGGAATCTCTGTCTAGGGCTGGGAGCAAATAGGGTTTCTCTAGCCTAGGACCCTGGGCTGTAAAGCTCAGGAGCCTGGTCTTTTTATTGCCTGCAGGTATGATGCCGCCGCCGCCTATGGG
Guinea pig scaffold_207956:14019-14121 + T----GTCCACACCTTGGCCTGGGGGTGAGTGG-----------CCAGGTTCCCTGTTCCCTGGAGGCCT-CACCTTGCTCT---CCCTCACTGCAGGTATGATGCCGCCGCCGCCTATGGG
Rabbit Unknown --------------------------------------------------------------------------------------------------------------------------

uc008gja.16 (chr19:6914896-6914960 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr19:6914871-6914985 - ###---------------------------------------------------------------------------------------#########################
AAGGTGGGTGCCGGATCCCGAGGCGGCTCTCCCGGACGGGTGGCAAGAGTCAGCGACCCTCTGGGCTCACTCGCCCCCCTGTGTCCGCAGCCAACCTCACCGGGCATGAGGAGAA
Rat chr1:209515857-209515971 - AAGGTGGGTGCCAGATCCCGAGGCGGCTGCCCGGGACGGATGGCAAGAGTCAGCGACCCGCTGGGCTCATTCGCCCCCCTGTGCCCGCAGCCAACCTGACCGGGCATGAGGAGAA
Guinea pig scaffold_265604:4480-4593 + AAGGTGAGCCAGGGGCCTGGCCATGGCTGCCCAGG-CAGCAGGGAGGAGTCAGGGACTGGCTGGGCTCATTCCCCACCCAGTGTGTGCAGCCAATCTGACTGGGCATGAGGAGAA
Rabbit Unknown -------------------------------------------------------------------------------------------------------------------

uc008gjq.15 (chr19:7034708-7034781 -)

3p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr19:7034683-7034806 - #########################----------------------------------------------------------***----------------#########################
TTCAAGTCCTTCGAGGCTGCTCGAAGTGAGTGGGGATGGGTGACTGGGAGCTGGCCCTGCCAGGCCTTGGCTGCTCTTACATC---CCTCCTCCTCCCCCAGAAAGGAACAAGTGCTTCGAGATGTC
Rat chr1:209634661-209634786 - TTCAAGTCCTTTGAGGCTGCTCGAAGTGAGTGTGGATGGGTGCCTGGGAG-TAGCCCTGCCAGGCCTTGGCCCCTCTTACATCTCCCCTCCACCACCTCCAGAAAGGAACAAGTGCTTTGAGATGTC
Guinea pig Unknown -------------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown -------------------------------------------------------------------------------------------------------------------------------

uc008gpb.1 (chr19:10139302-10139368 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr19:10139277-10139393 - --------------------------------------------------------------------------------------------#########################
AGGACCTCAGCCCTGCCTGCCTCCCTGGGTTGGAGAGGAGGTGGAGAACATGGGTCTTGGGTTGCACTCACTCTGCCCACCTGCTCCCCCAGCCTCTTCCCCACTATGCCACGTCAC
Rat chr1:212513319-212513435 - AGGACCTCAGACCTGCCTGCCTCCCTGGGTTGTAGAAGAAGTGGAGAGCTTGGGTCTTGGGTTGCACTCACTCTGCCCACCTGCTCTCCCAGCCTCTTCCCCACTATGCCAAGACAC
Guinea pig scaffold_278626:13734-13775 - ---------------------------------------------------------------------------CCCCTCTTTTTCCTTAGTCTTTTCCCCACAATGCCACGCCAT
Rabbit Unknown ---------------------------------------------------------------------------------------------------------------------

uc008gpk.5 (chr19:10288801-10288861 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr19:10288776-10288886 - -------------------------------------------------------------**--------**-----------------#########################
AACCAGAAAACACATGAAGGCTCACAGAAGTCCGGGACGGGAGGCAGTTGGCTTCCTTTTT--CTTAGCTA--TCTGCTTCTGTCCGTAGGCCCTGGCCAGATGGCCCCACTGCC
Rat chr1:212702916-212703016 - AACCAGAAAACACATGAAGGCTCACAGAAGCCTGGACCAGGAGGC--------TTTCTGTG--CTT----ATCCTTGTTTCTGTCCATAGGCCCTGGCCAGATGGCCCCTCTGCC
Guinea pig Unknown CTCCACCAAGCTT-TAGGCTATGACTAAGGCTTTAGGCTTTAGGCTATGAGCTTCCCTGTC--CTCAACTG-CCCCAGTTCTGTCCACAGGCCCCAGCCAGGTGGCCCTGCTGCC
Rabbit scaffold_182354:5450-5550 - GTCCAGGGGACCC-CGGGGACTGC---------CAGACAGGAGGCAGCAACCCCCCTTTACAGCCT----GTCCCTGCTTCTATCCACAGGCCCTAGCCAGGTGGCCCTGCTGCC

uc008hbc.17 (chr19:25201901-25201965 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr19:25201876-25201990 + --------------------------***************************----------------------------------------------------------------#########################
AGAGCACTGGCTAAGGGATTGCACCA---------------------------AGCTCCTGGGTGGATGGTGAAAGAATAACACCTCCTGAGAGTCTTCCACCCTCTGCCCTCCCAGGATAACCACCTGGAGAAGTTCTTCA
Rat chr1:228560671-228560785 + AAGTCACTGGCTAAGGGATTGCACCA---------------------------AGCTCCTGGGTGAGTGTTGAAAGAATAACACCTCTTGAGAGTCTTCTGCCTTCTGCCTTCCCAGGATAACCACCTGGAGAAGTTCTTCA
Guinea pig scaffold_153221:11694-11835 + GACCCCCAGGCTAAGAAGTCACACCCATACACAGTTGTTTGATTGTCTTTGTGAATCCTTGGTTGAACATTGGTGAGATAAGATTCCATGAGGGTGTCTTGGCTTTTGCCTTCCCAGGACATCCACCTGGAAAAGTTCTTCA
Rabbit scaffold_174877:91726-91861 - GAAATACTGCGTAAGAAGCTCCCCCCACCGAGAGCTGTTAGATTAT--GTGTGGGTCCAGAGGTGAACATCAGTGGGGTCAGAGCCCATGG----CTCCCTCCTTCTCCCTTCCCAGGATAACCACCTGGAGAAGTTCTTCA

uc008hsa.6 (chr19:46110490-46110550 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr19:46110465-46110575 - ---------------------------------------------------------------------**---*****************************************--------------#########################
AGGAAGCTTTTCCTCTGCATGCGTCTGAGCAGAGAGGGGTGGAACAGCACGGCTCAGCCACTGACCTCA--GTT-----------------------------------------CCTTCCCTCCCCAGGAGGCACACACCATATGGTAACCAA
Rat chr1:251256751-251256873 - AGGAAGCCTTTCCTTTGCATGCGTGTGTGCAGAAAGGGGGTGAATAGGATGGCTCTGCCACTGAggTgg--gTTggTgggTTTgTgggTTg-----------------------------gTTggACAGGAGGCACACGCCATATGGTAACCAG
Guinea pig scaffold_272580:67105-67242 - GGGAACGCTGT----------------AGTGGAGTCCACATGGAAGGGAACGCTCTGTGTCTGTGAAAGCCGAAGGTGTGGTTGGGGTTTGGCCCCAACCCTACTGTCCATTCTGCTCCTCTTCCCCAGGAGACACACACCTTATGGCAACCAA
Rabbit scaffold_200178:114498-114521 + A----------------------------------------------------------------------------------------------------------------------------------GGCATACACCATATGGCAACCAA

uc008hsm.0 (chr19:46237943-46238009 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr19:46237918-46238034 + -----------------------------------------------------------------------------------**---------#########################
aaaTGAaaccaatcaaccaatcaaccaaccaaccaaACAGCTGTGAAAAGGAAAAATATTAACCAATCTTTTCTCTTCAACTG--TTCTGGTAGGTTTGTCAGGATGGTGGATAAGAAT
Rat chr1:251384166-251384266 + aaatgaaaccaa----------------aCAGCCAAACAAATCTGAAAGGGAAAAATATTAACCAATCTTTTCTCTTCAACTG--TTCTGGTAGGTTTGTCAGGATGGTGGATAAGAAT
Guinea pig scaffold_291229:22674-22731 - AA-----------------------------------------------------AGATTAACCAGACTTTTATC------TG--TCTTGATAGGTTTGTCAGGATGGTGGATAAGAAT
Rabbit scaffold_8420:900-962 + A-------------------------------------------------------TATTTACCAGACTTCTCTC-TCAACTGTTTCTTGCTAGGTTTGCCAGGATGGTAGATAAGAAT

uc008ijw.5 (chr2:13146053-13146124 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr2:13146028-13146149 - ---********-----***************-----------------------------------------------------***********------------------------------------#########################
CAG--------CACTG---------------GGGTTTGACCTTACTTGCGTTCAATAGGGAAGTGTGTGGCTAGCATCCTTTGC-----------CCCTTGAATTCACATGCTGCATCTCCATCCCTATAGCTGTGCCACCAAATGTAGCGGAACT
Rat chr17:87486407-87486528 - CAG--------CGCTG---------------GAGTTTGATCTCGCTTGCGTCGGATAGGGAAGCGTGTGGCCTTTGCCCTTTGC-----------CCTTTGAATTCACGTGCAGCATCTCCGTCCCTATAGCTGTGCCACCGAACGTAGCAGAGCT
Guinea pig scaffold_252989:4876-5015 + TTCTAGGGTCACATTGGAATAACTGCTTCATgGGtttGtttttgtttt---------------TGTGTTGCTGGTGTTCCTGGCTGGGAGAGAGGCTCCTTGATTCACATCCTGCATT-TTGTCTCTATAGCTGTGCCGCCAAATGTAGCAGAGCT
Rabbit scaffold_208824:31-125 + AAG------------------------------------------------------------TGGGTTGCTGGCATTCCTTGGTA-GAGTGAGGTTCCTGGATTTACATTCAGTATTTTTGTTCCCATAGCTGTGCCACCAAACATAGCAGAACT

uc008irh.13 (chr2:25160733-25160807 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr2:25160708-25160832 - ############################------------------------------------------------------------------------#########################
GGGAATGCCCTGCGCTACGCTCCTGACGGTGAGTGCTGGGCTGTGGGGTCGCCTGGGACTGTAGGCCAGTCCAGTCTCTAAGCTCCAGGGTCCCGCGCAGGCATCATCGGACTTCAGCTAATCAA
Rat chr3:3466760-3466884 - GGGAACGCCCTGCGCTACGCTCCTGATGGTGAGTGCTGGGCTGTGGGGTTGCCTGGGACTGTAGGCCTGTCCAGTCTCTAAGCTGCAGGGTCCCCTACAGGCATCATCGGACTTCAGCTCATCAA
Guinea pig scaffold_278502:47328-47442 - GGAAACGCGCTACGCTACGCCCCGGAC-GTGAGTGCTGGGggGGGGGgGGGGgGGgggGG------GGGgGCACGCGCTGAAGGCGACCCTCC--TGCA-GCATCATCGGGCTGCAGCTCATCAA
Rabbit Unknown -----------------------------------------------------------------------------------------------------------------------------

uc008isc.32 (chr2:25299508-25299589 +)

mirtron_candidate

Species Coordinate Alignment
Mouse chr2:25299483-25299614 + #########################----------------------------------------------------------------------------------#########################
GTGCTAGCCTCTCCCTGGATTACCTGTGAGTGAGGCAGACCAAGTTGAGGAGGGGCAGGACCACCTCGTCCTGACACCTCCTGGAACTGAGTGCTGTCCCCTTCTAGACTGCAGGGCACAGATGTGGTCATC
Rat chr3:3610888-3611016 + GTGCTAGCCTCTCCCTGGATTACCTGTGAGTGAGGCAGACCGAGTGGAGG-GGGGCAGGACTGCCGGGTCCTGACAGCTCCTGGAGCTGAGTGCTGT--CCTCCTAGACTGCAGGGCACAGACGTGGTCATC
Guinea pig scaffold_115475:555-678 + GCGCCAGCCTCTCCCTGGACTACCTGTAGGTGGGGCAGGC-------ATG-GGGGTGGATCTGCTCACTCTGGGTGCCGTGCCTGGCTGACCACCGCCTCCCCCTAGGCTGCAGGGCACAGACGTGGTCATT
Rabbit Unknown ------------------------------------------------------------------------------------------------------------------------------------

uc008jeh.32 (chr2:31906461-31906528 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr2:31906436-31906553 + ----**----**-------------------------------------*------------*---------------*---------------------#########################
TGTG--GTAC--ATCCAAGACAGGTGACAGTGAGTGAGGTGTGGGCAGC-ATGAGGACTAGG-GCCATGACAACCCTG-TCCCATTCTCACCGCACCCAGGTTCGGGAGCAGCGGCAATACTGCA
Rat chr3:11163709-11163798 + GCCAAGGTAA--------------------------------AGGCTTACTCTGG-GCTGGAAGCCACACTAAC-CTG-TCCCTTTCTTGCTGTACCCAGGTTCGGGAGTAGCAGCAACACTGCA
Guinea pig Unknown -----------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown GTTG--GCAGGGGCCTGAGGCTTGGGCTGATGGGCGGCTTGTGGGGGGC-AGTGA-GCAAGAGGCCACGCCAACCAGGGTCTGTTTGTCCCTGAACCCAGGTTTGGGAGCAGCAGCAACACGACA

uc008jev.23 (chr2:32161417-32161496 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr2:32161392-32161521 + ####-----****------------------------------------------------------------------------------------------------#########################
ATTGGTGAG----GTGGAGCCCAGCCCAAGGCAGTGGGGGCTGTGCAGGGGGGTAGACTGGGGGAGCCACAGTGTCTGAGCCTTGTCCACCTGCCTGCCGTCTCCACAGGAGAGTACATTGCCCTTTACCAAAA
Rat Unknown ATTGGTGAG----GCAAGGCCCAGCCGAATGCA---------------TGGGGCAGAT--GGGGAGCCATAGTGTCTGAGCCTTGCCCACCTGCCTGCCGTCCCCACAGGAGAGTACATTGCCCTCTACCAAAA
Guinea pig Unknown GTTAGTGAGCTGGGCCAGGGTCAGCTAGA-GGA---------------TGGGGC----TCTGGGAGCC-TGGTGAGTGAGCCCTGACCACTGACCT---CTCTCCACAG-AGAGGATATTACTCTGTGCCCAAA
Rabbit scaffold_209544:37501-37500 - --------------------------------------------------------------------------------------------------------------------------------------

uc008kfn.299 (chr2:76793146-76793217 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr2:76793121-76793242 - -----*****------------------------------*--------------------------------------------------------------#########################
AAGTA-----AAGGAGCTATCCCAGGAGGCTGTCCCTGGG-AGGAGGTGTCCAAGTGTAACTTTGACATTATCAACTACTCACTTGGAAAACCTTGTCTCCAGGTGGGCGTTGGGAAGAAGGCAGAAG
Rat chr3:59645477-59645578 - GAGTA-----GAGGGGCTATTCCAGGAG---------------------TCCAAGTGTAGCGTTGACATGATCATCTACTGACTTGGGAAACCTTGTCTCCAGGTGGGCGTTGGGAAAAAGGCAGAAG
Guinea pig scaffold_285122:92119-92246 + GAATGTCCAGGAGGAGATGGTCCAGGAGGATGTCCCTGGGGAGGAGATGACCCAGCCTGACTTTGACACTACTATGTACTAATTCTGGAAACTTTGTCTCCAGGTGGGCGTTGGGAAAAAAGCTGAAG
Rabbit scaffold_200606:15296-15415 - GACTG----GGAGGAGATTTTCCAGGAGGCTATGCCTGGG----GGATTTCTCAGCCTGACTGTGACATTGCTGTGAATTAATTCTGAAAACCTTGCCTCCAGGTGGGCGTTGGGAAAAAGGCTGAAG

uc008kju.9 (chr2:84882772-84882849 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr2:84882747-84882874 + ----------------***************----------------------------------------------------****-----------------------------------#########################
CTCGCTCACGGTCTCC---------------TGATTTCACAGGCGTGGGGAAGTGCTTTGAGTGTGCAGAAGTGCTGGTTTGA----ACACGGTGGCTGACACTCATGTCTTCCCTCGCTAGGGCATTAACCCAGGCTATGACGATT
Rat chr3:68277676-68277814 + CT----CACGCTCTCCTGGGAGCTGCTGTTCTGATTTCACAGGCGTGGGGAAGTGCTTTGAGTGCTCAGAAGTGCTGGCTTGA----ACATGGTGGCTGACACTCACTTCTTCCCTCGCTAGGGCATTAACCCAGGTTATGATGATT
Guinea pig scaffold_293200:2423-2447 + --------------------------------------------------------------------------------------------------------------------------ggcaaaaatCCAAAATACCGCAAAT
Rabbit scaffold_192901:12847-12986 + CC---CCAGGGCCTCCTGGGAGCTGCT--TCTGATTTTACAGGCATGGGGGAGTGCTGTGAGTGTGCAGA-GT-CTGATTCAAGGGCAGATTGGGCCTCACTTGCATCTCTTCCCTGGACAGGGCATGAACCCCAGCTACGACGAAT

uc008kuo.13 (chr2:91002790-91002852 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr2:91002765-91002877 - -------------*-******----*-------------------------------------*-----------------*----------------#########################
GTCTGGGCAAGGG-A------TTGG-GATCAGCTGGGCAGAAGAGTGTGGATGTTAGAGAGAG-GTTGCTAGCTCTAGGTC-CTGGCTCTTGTTGCAGGAGATCAGCCGGAAGGTGTACAAGG
Rat chr3:75522552-75522665 - GTTTGGGCAAGGGAG------TCAG-GATCAACTGGGCAGAAGGATGTGGATGTCAAAGAAAA-GCTGCTAGCTCTAGGTC-CTGGCTCTTGTTGCAGGAGATCAGTCGGAAGGTGTACAAGG
Guinea pig scaffold_282015:30851-30970 - GgTGGGGgTGGGG-gTGGGGgTGGGGgtTgTCCCAGGCAGAAGGACGTGGCCCCCAAAGGCAG-TTTGCCCATGCCGG-CCCTGGCTTATGGTTGCAGGAGATCAGCCGGAAGGTGTACAAGG
Rabbit scaffold_195123:8975-9088 - ATCCGAGCTGAGGCA------GCGG-GATCCACCGGGC-GAGGGGTGTGCACTCCACAAGCAGTGTTACCAACTCTGTCGC-TGGGTTCCCCATGGAGGAGATCAGTCGCAAGGTGTATAAGG

uc008kvn.5 (chr2:91102864-91102924 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr2:91102839-91102949 + -------------------------------*-------------------------------------------------------#########################
TAGCCTATGGCTATGCTCAGAGAATGCTGGT-GCGGGCCTGAGTGGAAGGCAGTCTGTCCTCACTGCCTCCCTTCTCTCTCACCCAGATGAAAACCCAGTATGAGCAGACCC
Rat chr3:75617609-75617720 + TAGCCTGTGGCTATGCTCAGTGAATACTGGTTGCAGGCCTAAGTGGAAGGCAGTCTGTCCTCACTGCCTCCCCTCTCTCTCACTCAGATGAAAACCCAGTATGAGCAGACCC
Guinea pig scaffold_282015:97544-97628 + TGGC-------TTTGCCTGCTAAATGCAGAT-GT-------------------ACAGTGCTAACTGGCCCCTACCTCTTCCACCTAGATGAAAAGCCAGTACGAGCAGGCGC
Rabbit Unknown ----------------------------------------------------------------------------------------------------------------

uc008loo.5 (chr2:112083341-112083415 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr2:112083316-112083440 + --------------------------------------------------------------------------*------********--------------------#########################
CATCTGGGGTGAAGCATGAGGTGAGGTTGGGGTCTGCTGAAGGAGACTGGCTGGTTTCCAGGAAGAGAACTAAC-CTCTGC--------CCCTTCTGCTTTTCCCACAGGACACCACCAGCTGGGCATGGAGGG
Rat chr3:98086989-98087117 + CATCTGGGGTGAAGGGTGAGGTGAGGTTGGAGTCTGCTAAAGGAGATTGGCCGGTTTCCAGAAAGAGGAGTAACATTCCGCCC-----CTCCTTCTGCTTTTCCCATAGGACACCACCAGCTGGGTCAGGGGGG
Guinea pig Unknown --------------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_206059:92184-92267 - ---------------------------------------------ACTGGCCGGTTCCA-----GAGAGGTAATGCTCTTCACGATTAACACCTCTGCTTCTCCCCTAGGACACCACCAGCTGGGCTTGGAGGG

uc008lue.0 (chr2:119517776-119517851 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr2:119517751-119517876 + -----------------------------------------------------------------------------------------------------#########################
TGAAAGCACAGGCGTGTAGAAAAAAAGATCCTGGGGAGAATGGCCATTTCATTACACTTTTCTGGTGAGCAAAACTGACGTGACCATTTCTGCCCAATTAGGAGCTCTTGTCCCTGGCGAAACGGA
Rat chr3:106208348-106208472 + TGAAAGCACAGGCAC-TGGAAGAAAAGATCATGGACAGAATGGGCATTCCATTATACTTTTCTGTTGAGCAAAACTGATGCAACTATTTCTGCCCAATTAGGAGCTCTTGTCCCTGGCAAAACGGA
Guinea pig scaffold_276349:13573-13690 - TGAAAGTACGAAGATGGA---GAAAAGATCCGGG--AAGGTGGACATTGTATTAT---TCTTTGCTGAACAAAGCTGATACTACCATTTTTGCCCCATCAGGAGCTGCTGTCCCTGGCAAAACGGA
Rabbit scaffold_132774:2088-2156 - T---------------------------------------------------------TCTCTGTTGAACAAAACTGATGTGACTATTTCTGCCCTCTTAGGAGCTGTTGTCCCTGGCCAAGCGGA

uc008luk.14 (chr2:119599695-119599764 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr2:119599670-119599789 - -----------****************************************-------------------*****************************************---------------*--------------------------------------------------#########################
TTTTCCTCCTT----------------------------------------ACTGTGGGTCAGACTAGGA-----------------------------------------ATGGGGCAAATGTGC-AGTAACGGGTCAGCAAAGGTTCTATCCAAGTTCTGCATCTTGTACCCAAGGCCCAGGCTGGTGAGTTTGGGGACC
Rat Unknown TTTTCCTCCTT----------------------------------------ACTGTGGGTCAGACTAGGA-----------------------------------------ATGGGGCAAAAACAG-GGTGATGGGTCAGCAACAGTTCTATCCAAGTTCTGCATCTTGTACCCAAGGCCCAGGCTGGTGAGTTTGGGGACC
Guinea pig Unknown TTCCCTCCCTTCTGTCCTTTCT--GCCTGGCATGAGCCCATACATCAGTT------------GTCTGGGA-----------------------------------------ATGGGGCAAGCACAGCAGTCATGGACTGGCAAAGATT---------TTCTGTAACTTGC-CCCAAGGCCCAGGCTGGCGAGTTTGGGGACA
Rabbit Unknown TTCCCCACCTCCTGCCCCTTTTCACTCTGGC-------------TCAGCTGACTGTGCCTCAGACTGGGATAAACTCCAGGTCATCCATGATCAGTGGGCAGGTGGAGGGGTTGGGGCAAAGACC-------------------------GTGAAGCTTCAGCGTCTTGCCACCAAGGCCCAGGCCGGTGAGTTTGGGGACC

uc008mja.10 (chr2:130265898-130265966 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr2:130265873-130265991 + ---****************************************************------------------------------------------*------------------***-------------------------------#########################
AAG----------------------------------------------------ACCTCTCCATTTGAACTATGTAGTCCCATGAGGCTGGGGACC-AGAGTGAGACTGTCTGTG---TAATGTTCCATCTCTGGGCCTCTCCCCACAGAAAGAGAGCCAGAAAGCAGATGAGT
Rat chr3:118055280-118055397 + AAG----------------------------------------------------ACCTTTCCATTTGAACTATGTAGTCCAC-GAGGCTAGGGATC-AGAGTGAGACGGTCTGTG---TGATGTTCCGTCTCTGGGCCTCTCCCCACAGAAAGAGAGCCAAAAAGCAGATGAAT
Guinea pig scaffold_213934:7969-8136 + AAGTACATTGAGTGGGCCAAAGGGATTAGGGCACCAGCCTGTGCAGCCCCTCCAAACCATTTCATTGGAACCAC--AGTGCAGAGTAGCTTAGGGCCAAAAGTGATACGTCCTC-----TCATAATCCATCCCTTGGCCTTTCTCTGCAGAAAGAGAGCCAGAAGGCAGATGAGT
Rabbit scaffold_192983:8835-8944 + --------------------------------------------------------------CGTCTGAACCAC--AGTCCTGAAGGGCAGGGGGCCACGTGTGGGGATGTCTCTGTTCTCACGCTACATCCCTGGCCC-TTCCCCCTAGAAAGAAAGCCAGAAGGCGGATGAAT

uc008mja.5 (chr2:130264421-130264473 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr2:130264396-130264498 + #########################-------*-----------------------------------------------------------------------
GGATCATGCTACCTGCTCTGCAGTGGTGAGAA-CCTAAGTGGGAATGAAATGGAAGGGCTGGTCAACAAGTAGGAAGGCATTGAGAAGTCAGTTTATCTGGTTT
Rat Unknown GGATCATGCTACCTGCTCTGCAGTGGTGAGAA-CCTAAGTGGGAAAGAAATGGAAGGG--------------------------------------TCTGT-TT
Guinea pig Unknown GGATCACGCAACCTGTTCTGCAGTGGTGAGGC-CCAGAGCAAGAATGAAGTGA-GGGG--------------------------------------TCTGTGTT
Rabbit Unknown GGACCATGCAACCTGCTCCATGGTGGTAAGGACCCTGAGTGGGAATGAAATGGAAGGG--------------------------------------TGTGATGT

uc008mks.1 (chr2:130973020-130973083 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr2:130972995-130973108 - -------------************************************************----*--------------*----------------------------------------------------------#########################
AGGGACCATCTGG------------------------------------------------GGAC-TGTGCATGCTGGGG-ACAGTATGGAGGAGCTGTAGGAGATACTGATTGCCTATCCATCCCTGTCCTCCAACAGGTTACAGCATCAAGTGTGAGTACTC
Rat chr3:118852355-118852507 - AGGAACCATCTGGGCTTCTTTCTGGAA-------GAGACTCAGCAAGAGCTACTGGGTGGGGGAC-T--GAGTGCTGGGG-ACAACATAGAGTAGCTATGGAAGGTACTGATTGCCTATCCATCCCTGTCCTCCATCAGGTTACAGCATCAAGTGTGAGTACTC
Guinea pig scaffold_277137:43143-43267 + C-----CACTT----TCCTTTCTTTAGGAGGGGAG--------------------------GGACACATAAGTGCTCG-G-TCAGGGTTGGGAAGCTGTGGGGGTTGCTGATCACCTGC-GGTCCCTGTCC-CTGGCAGGTTACAGTGTGAAGTGCGAGTACTC
Rabbit scaffold_203294:92334-92420 - G-----CAGT---------------------------------------------------------------GCCTGGGAGCAG-GCCGGGA-----GGTCAGGTGCTGATCGCCTGCC---CCGTGCCCCCGGGCAGGTTACAGCGTCAAGTGTGAGTACTC

uc008nht.3 (chr2:153243616-153243695 -)

mirtron_candidate

Species Coordinate Alignment
Mouse chr2:153243591-153243720 - #########################------------------**-----------------------------------------------------------*---#########################
CCCCGAGCGGCTCAAGGCCTTCAACGTGAGCACCAGGCAGGGC--TGGTGGGACACCGATGGGTCTAAGGCAGGGCCAGTCCTCTCCCATAGCCTGTGTCTCCC-CAGATGTTCGTGCGGCTCTTCGTGGATG
Rat Unknown -------------------------------------------------------------------------------------------------------------------------------------
Guinea pig Unknown -------------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_163678:805-927 + CCCCGAGCGGCTCAAGGCCTTCAACGTGAGCA--GGGCG-GGCTGTGGTGGGGCG-----GGGTCCTGGCCGGGGACGG--CGTGCCCACGGCCCGTGTCGCCCACAGATGTTCGTGCGTCTCTTTGTGGACG

uc008nkx.6 (chr2:155398912-155398967 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr2:155398887-155398992 - ---*--------%%%%%%*%%%%%%%************%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%#########################
TGT-GTTCTCACCTCTCT-CTGAAGG------------AGCAGCAGGAAGGGCGAGGTCTGCGGCGACCCTGGCTCACTTGTGCTCTTTCTGCAGTGCGGTGGTGCTACTGATTGCTCAA
Rat chr3:146067571-146067667 - TGC-GTTCTCACCTC-------------TCTG-AAGGGAGCGGCA-------C-AGCTCAGCAGCAGGCCTGGCTCACCTGTGCTCTTCCCGCAGTGCCGTGGTGCTACTGATTGCTCAG
Guinea pig scaffold_287256:83605-83714 - TGCTGTTCTCTTATTTgTtttGtGGgTGtttgtGtG----------GAAGGACAAGCTCTTTAGCAATCTCAGGCCACCTGTGCTTTTTCTCCAGTGCTCTGGTGgTtgTGtTTGgTgtt
Rabbit Unknown CGT-GGGCTC----T-------------TCTG-GAG----------GAAGGACAGG--CCGCAGCCGCCTCTGGCCACCTGTGCTCTTT-TCCAGTGCCGTGGTGCTGCTGATTGCTCAA

uc008nlc.0 (chr2:155460877-155460963 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr2:155460852-155460988 - #################------------*----------*-----------------------********************************-------*---------------------------*-------*---------#########################
GCACCTGCCTGGAGAATGTGAGTGCCCCA-CCCTGAGTGA-CAGTGGGAGGACACTGGCGTGTG--------------------------------TGAGCCC-CGTCCTCTACTAAGCACAGCCCAACCC-TCTCGCT-TTCACTCAGAGCTCCTGTATCAGCTTCTCGTACT
Rat chr3:146140318-146140451 - GCACCTGCCTGGAGAATGTGAGTGCCCCAGCCCCGAGTGA-CAGTGGGAGGAGAGTAGCATGT----------------------------------GAACCCAAGCCCTCCA-----CACTTCCCAACCCTTCTCGCTCTTTACTCAGAGCTCCTGCATCAGCTTCTCATACT
Guinea pig Unknown GgtggTGggTGGtGtACGTGAGTGCCCCAGTCCCGAGTGGGTGGCAGGCGGGCAGTGGCATGGGGCAGGATACTCTTTGTCCCTAGGGTTCTGGCTTG-GCCTCAGTCCTCCA---GGCGCCCTCCAGCCCCTCTC--TCTTTACTCAGAGCTCCTGTATCAGCTTCTCATACT
Rabbit Unknown ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

uc008nme.9 (chr2:155904158-155904223 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr2:155904133-155904248 - --------------**-------------------------**--*---------------------------------**********-----------------#########################
GTTTGGGAACCGAG--AGAAAAAGCCTGTTGGTGGGTAGAG--CG-GTGGGAGCTCTTCATGGGCCAGACCAGAGGTCT----------CTACTCTCCACCCCCAGGTAGTCAAGAACAACCTGAACCCTA
Rat chr3:146487351-146487466 - GTTTGGGAACTAAG--AGAGAAAGACTGTTGGTGGGTAGGAAACA-GTGAGAACTCTTCATGGGCCCAACCAGAGCTCT----------CTACTCTC--CCCCTAGGTAGTCAAGAACAACCTGAACCCTA
Guinea pig scaffold_208739:4372-4498 + GGTTTGAAACACAT--A-AAAGAGATTACAAGTGGCTATGGAGGT-ATGACAGTGCCTCATGTACCAGGTCAGAGTTCTGTGAGAGGTCTTGCTTTCTACCTTCAGGTAATCAAGAACAACTTGAACCCTA
Rabbit scaffold_206166:28123-28252 - GGTTTGGAATGCAGGTAGAAAAATACTGCAGGTGGGTAGGGAAGGGCTGGCAGATCCTCATACACCTGGCCAGAGCTC-ACAGGAAGCCTTGACCCTCACCCTCAGGTAATCAAGAACAACCTGAATCCTA

uc008nnw.0 (chr2:156604193-156604254 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr2:156604168-156604279 + ---------------------------------------------------------*-------------**-----------------#########################
TGAAGAGCAAGCTGAGACCTAACTTTAGACCTCAGGGGAAGGCAGGGATGATCCCTG-TCCATCATCATCC--CCCGCCCCTCCCTGTAGGGAAACCCCCAACACCCAAAGGCAA
Rat chr3:147190158-147190265 + TGAATAGCAAGCTTAGCCCTAAA---AGCCCTCAGGGGGAGGCAGGAAGGTTCCCTG-TCCATCATGATCC--CATGCTCTTCCCTGTAGGGAACCCCCA-ACACCCAAAGCCAA
Guinea pig scaffold_105893:360-472 - TGAATGCCAGGCCTAGAGTGAGAGCC--ACCCCCGGGGGAGACAGGAAGATCCCCTGGCTCAGAGTCATCCCCCAACCCCATTCTTGCAGGGCAGCCCCACCCACCTGAAGCCAA
Rabbit scaffold_215277:49819-49891 - -----------------------------ACTCTGTGCGAGGCAGGAAGGTTCCCTA-T------------CCTGGCCCTCTTCTTGCAGGGAAGCCCCACCCACCTGAAGCCAA

uc008nrc.1 (chr2:160579116-160579177 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr2:160579091-160579202 + -----------**----------***************************************************-------------------*------------*-----------------------------****------#########################
TGTGACATCGT--TGCCAGGAGA---------------------------------------------------AACCTTGAATTAGGAGATG-GGCTAGGTGTGG-AATGGTTTTTGCCATGACCTGGTCTGCTT----CCACAGCACAAGAAGCTGGCTGAGGGCAGTG
Rat chr3:151544175-151544276 + TTGGA------------AGTAGA---------------------------------------------------AACCTTGCGTCAGGAGATGGGGCTAGGTGTGG-AATGGT-TTTGCCATGACCTGGTCTGCTT----CCACAGCATAAGAAGCTGGCTGAGGGCAGTG
Guinea pig Unknown TGTGGAAT-GTGGTGTG---AGGAACCC---ACTTCCAGCACCCTTCCTAGGTCAGGACTT---CTCTAGGTCCACCCCTGAGTGTTAAGGTGGGGCTAGGACTGT-CATGAACACTGCCCCAGTCTGGTGTGCTACTTGTCACAGCACAAGAAGCTGGCTGAGGGCAGTG
Rabbit Unknown TGTGGTGG-GCTATGGG---TGGAGCCCTTTACTCCCAGCACCTCTCCTAGACCAAGGTTCCAGCTCGTGGTCTAGTCTTGGGTGAAGAGGTG--GCTGAGACTGGGAATGGC-ATTGCCTTGACCTTGTGTGCACC---CCACAGCACAAGAAGCTGGCTGAGGGCAGTG

uc008oip.21 (chr2:179917174-179917233 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr2:179917149-179917258 - ---------------------------------------*----------------------------------------------#########################
CCTATCTTTGTCCTCACTCCATTTGTGGGCCAGGAGGGT-TGGGTGGAACTTCTTGCCACTGAGGCTGCCTCCCCTCCCTCCACAGCTCAGGGCCGTCTGCAGGCTGCGGG
Rat chr3:169239983-169240089 - TCTGTCTTTGTTCTCACTCCATCTATGGGCCAGGAGGGTTTGGGTGGAACTCCTTGCCACTGAGGCTGCCTCCTC----TCTGCAGCTCATGGCCGCCTGCAGGCCGCGGG
Guinea pig Unknown ---------------------------------------------------------------------------------------------------------------
Rabbit Unknown ---------------------------------------------------------------------------------------------------------------

uc008pvo.1 (chr3:88354708-88354776 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr3:88354683-88354801 - ----------****---------------------*---------------------------------------------------------------#########################
GAGACAATGT----CACTAGGACCAGAGGAACCCT-GGGGAAGGCAGGAACTAAGGATGTCAAGCAGAATGCCCCAAAGTATCATGTCCTTCCCACCAGGAGGGCCGTGTAGCCATTACGAGGG
Rat chr2:180666300-180666422 - GAGACAATATCTATCTCTAGGACCAGAGGAACCCT-GGGGAAGGCAGGAACCAAGGATGTCAAGCAGAGTGCCCCAGTGTATTATGTCATTCCCACCAGGAGGGCCGTGTAGCCATTACCAGGG
Guinea pig Unknown ----------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_212035:43639-43734 - --------------------------AGGAACCCTCGGGGAAGGCGGGGCCTGTGAGTGTCAAACAGAACATCCCATCCCTTCATGTCC--CCTACCAGGAGGGCCGTGTAGCCATCACCCGCG

uc008pvu.3 (chr3:88436132-88436197 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr3:88436107-88436222 + -------------------------------------------------------------------------------------------#########################
GATGCCAGGATCTGGCTTGTTCTGGGTGTGTGGCAGGGCAGTCTTTGGGTGACAGCTGTTTGTGGTGTCTCTCTTCTGCTCTGTGTCACAGCAACAGAAAGCTGCACTGCTGAGGA
Rat chr2:180759300-180759393 + GCCGCCAGATCCTGGTTTGTCCT---------------TGGTCTTTGGGTGATGGCTCTC-------TCTCTCTCTTGCTCTGTCTCACAGCAACAGAAAGCTGCACTGCTGAGGA
Guinea pig Unknown --------------------------------------------------------------------------------------------------------------------
Rabbit Unknown --------------------------------------------------------------------------------------------------------------------

uc008qad.3 (chr3:89583273-89583358 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr3:89583248-89583383 + --------------------------------------------*------------***-----------------------------------------------#################################
ACCATGGGGGGAGGGGGGGTGGCTTGGGGCTCTGGGACAAGTGG-ACTGAGGAAAAG---TCTATCCACTACTTTTGTGGTAACATTCCTTTGCACTCCTGCCTCAGGATACAGAAGACCTAGATCACTATGAAATGAAA
Rat Unknown GCG---------------GGGGCTCGGGGCTCTGGGACAAGCGGCACTGAGAAAAGGTCGTCTGTCTGCCAGCTCTGTGGTGTCTTTGCTCTGCTCTCCTACCTCAGGATACAGAAGACCTAGATCACTATGAGATGAAA
Guinea pig Unknown --------------------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_129858:4949-5001 + ---------------------------------------------------------------------------------------CTTTCTCGATCCCACTGCAGGACACAGAAGACCTAGATCACTATGAAATGAAA

uc008qig.11 (chr3:94974178-94974239 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr3:94974153-94974264 + ------------------*****---**---***-----------------------*----------------------------------------#########################
AGGATGGGAGGCAGGGCA-----TCT--CGG---TGCTCCTGGGAGTGCTCAAGCTT-CATTAGACAAGCTGTCCTCACCTGAAGCCTGTCGCTCCAGGGCCCTGCTGACCCAGGTAGCTGTG
Rat chr2:190075480-190075588 + AGAATGGGAAGCAAGGCA-----TCT--GGG---TGCTGCTGGAAGTGCTCAAGCTT-TACTAGACA---TGTCCTCACCTGAAGCCTACCGCTCTAGGGCTCTACTGACCCAGGTAGCTGTG
Guinea pig scaffold_253287:9673-9787 - GGGTTGGG--GA-AGACACAGGACCCGCAGG---CACCCCTTGAA-TGCTCAAGCTTCCACTAGACAGGGTGCCTTGACCTGAGGTCTAT-GTTCTAGGGCTCTTCTGACACAGGTAGCTGTG
Rabbit scaffold_182830:1151-1270 - GGGTCCCGGGGACGGGCACAGGA---GCGGGCTCTCCTCCCAGAAGGGCGCCGGCTCCCACTAGGCAGGCTGCCCTGACCTGAGGCCTGTCCCTTCAGGGCCCTCCTGACCCAGGTAGCTGTG

uc008sii.18 (chr4:41068178-41068243 -)

3p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr4:41068153-41068268 - #########################-----------------------------------------------------------------------------------########
GCTGAGGCAGCGGGAACTGGACAAGGTGAGTTGTGGGTGGCCTGGTTTCCTCGCCTCTTTGTGGGAAGGGTTGCTCCTGAGCTCAGTCCAGTCATGCTTCTCTTTCAGGGCCTGGG
Rat chr5:58530018-58530133 - GCTGAGGCAGCGGGAGCTGGACAAGGTGAGCTGGGGGTGGCCTGGCTTCCTCGCTTCGTTGCGTGATGACTTGCTTCTGAGCTCAGTTCAGTCATGCCTCTCTTTCAGGGCCTGGG
Guinea pig Unknown --------------------------------------------------------------------------------------------------------------------
Rabbit Unknown --------------------------------------------------------------------------------------------------------------------

uc008sqb.5 (chr4:43532373-43532482 -)

mirtron_candidate

Species Coordinate Alignment
Mouse chr4:43532348-43532507 - #########################------------------------------------------------------------------------**--------------------------------###############################
AGAAAGCCGCGGATGAGAGCGAGAGGTGAGGAAGGGGGCCCAGAAGTAAGGCAGGGTAGGGACTGCAGAGGGAGGGACCCCATCTCTGCTGGCACTG--GCCCCACACGCACTTCTGTCCCTGCTTCTCAGAGGAATGAAGGTCATTGAAAACCGGGCCATG
Rat chr5:59999021-59999179 - AGAAAGCCGCTGATGAGAGCGAGAGGTGGGGAAGGGGGCCCTGAAGTAAGGCAGGTTAGGGACTGCAGAGGGAGGG-CTCCGTCTCTGGTGGCACTG--GTCCCACACGCACTTCTGTCCCTGCTTCTCAGAGGAATGAAGGTCATTGAGAACCGGGCCATG
Guinea pig scaffold_266579:3442-3595 + AGAAGGCAGCTGATGAGAGCGAGAGGTGGGCAGGGGGCCAGGG---CAAG---GGGTAGGCAGGGTGGGAGCAGGA-GCTTGGCTTTGCTG-TGGTGACCTCTCATACTTGTCCCTCTTTCTGCCTGTCAGAGGAATGAAGGTGATTGAGAACAGGGCCATG
Rabbit scaffold_214019:28780-28905 + AGAAGGCTGCTGATGAGAGCGAGAGGTGGGTGGGGGCCCTGGGAAGGAGGGCGGGG--------GCTGGGGGAGGCGTCCTG----------------------------ACCCCTCTCCCCGTGTCTCAGAGGCATGAAGGTCATCGAAAACCGGGCCATG

uc008tlz.6 (chr4:86314610-86314670 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr4:86314585-86314695 - -----------------------------------------*-------*--------------------------------------#########################
ACTGTCTATGCTGGAATTGTGGGCCTGCCTAGGTTGGGACA-GGAATTG-GTCCTCAATGTTCTGAAACCAGTTTCTTTTCTCTCCAGGCGTCTCTTTTCTCCAGGAGGAAAA
Rat chr5:105731663-105731774 - ACTGTCTGTGCAGGAATTGTACGCCTGCCTTGGTTGGGACA-GGAATTGTTTCCTCGGTGTTCTGGAGTAATTTTCTTTTCTCTCCAGGCATCTCTTTACTCCAGGAGGAAAA
Guinea pig scaffold_284336:5009-5060 + -----------------------------------------------------------GTCCTGAAGTGAGTTTCTTTTCC--ACAGGTTGCTTTTTGCTCCAGGAGAAAAT
Rabbit scaffold_177604:44351-44436 - TTGGGCTGGGAATGAATCA---------------------AGGGAGTCT-TATCCTAGCGTCCTGAAATAAGTATCTCTCCCA--TAGA---TTCCTTTCTCCAGGAAGAAAA

uc008tyf.3 (chr4:106019731-106019801 +)

shrna_candidate

Species Coordinate Alignment
Mouse chr4:106019706-106019826 + GGGCAGAGGAATATCATGCCAGCCCTTGGCTCC-TTC-ACTAGCTGAGACCTGAGCTTGGCCAGTGTGCTGCAACAAC--TCTGCTAGTGGAGAGACCAAAGGCTGGATTTTTACCTTCTTTTCT
Rat chr5:127404402-127404467 + GGGCAGAGGAACAT--------------------------------------------------------GCAACAAC--TCCATCAGTGGAGGAACCA-AGGCTGTATTTTTATCTTCTTTTCT
Guinea pig scaffold_223672:1178-1268 + -----------------------CCTTTGCTCCTCTGCGTTAACCAGCACTTG----------CTATTCTTGAATAAGTTTCCATTCACAGACAGTCCA-CAcctatatttttatcttcttttct
Rabbit scaffold_198272:50404-50524 - GGACAGGAGAGCCTCACATCTGTCCTTTGCTCT-CTGAATTAGCTACCGCCTGTGCTTTGTAGATACTCCTGAAAGAG--TCCCTTAATGAAAAGTCCA-AGGCTATATTTTTATCTTCTTTTCT

uc008tyx.13 (chr4:106718866-106718920 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr4:106718841-106718945 + --------------------------------------------------------------------------------#########################
GAGCCTTTGAAGGCATTTGGGAAGCAGAAAAGGGGTGCGAAGGGCCTGGGTCCACTAACCAAGCCCTGCTTACCCCACAGTTTCCAATGGGTCCTGGCTCAGACG
Rat chr5:128125461-128125565 + TTGCCTTCAAAGGTGCTTGGGAAGCAGAAGAGGGATGCAAAAGGTCTGGGCCCACTAACCAAGCCCTGCTTACCCCACAGTTTCCAATGGGTCCTGGCTCAGATG
Guinea pig Unknown ---------------------------------------------------------------------------------------------------------
Rabbit Unknown ---------------------------------------------------------------------------------------------------------

uc008uht.4 (chr4:116669635-116669722 +)

mirtron_candidate

Species Coordinate Alignment
Mouse chr4:116669610-116669747 + #########################------*************------------------------------------*----------------------------------------------#########################
CCATGAAGAAAGGCACAATTGTCAAGTGAGT-------------GGGCTCTGGGCATGACAGGGTGGATGAGCCATGTGC-TGCGGGTGCCTAGAGACTCATTCAGATACATACTCTGGGTCCTCAGGAAGCTGCTACTCACAGTGGATACC
Rat Unknown --------------------------------------------------------------------------------------------------------------------------------------------------------
Guinea pig scaffold_250789:6975-7120 - CTATGAAGAAGGGCACAATTGTCAAGTGAGTCACAATTGTCAATTGACTCTGGGCAGGTCAG--TGGATGAGCCATGTGCTTGTGGGTGCATAGAGACCC----AAGTGCACATTCTTACCCCTCAGGAAGCTTCTACTCACAGTGGATACC
Rabbit Unknown --------------------------------------------------------------------------------------------------------------------------------------------------------

uc008ujq.1 (chr4:117883110-117883177 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr4:117883085-117883202 - --**-------*------------------------------------------------------------------------------------#########################
AG--GGATATG-GGAGGGGGGACGGTGGTCCCGAAGGCCAGGGAAGTTGATTGTGTGAAGGGAGCAGGACTCCTGACACAGCCATTCTCTGAGCAGTGCTGGTGTGGGCCGCACCGGTGTG
Rat chr5:138673201-138673302 - GG--G--AT-GGGGT----GGGCGGAGGTCCCGAAGGCCC----------CTGTGTGAGGTGAGCAGGCCTCCTGACACGGCCATTCTCTGAGCAGTGCTGGTGTGGGCCGCACAGGGGTG
Guinea pig scaffold_295286:136983-137096 - AG--GGCCA-GAGGT----GGGAGGTGGTCCTACAGACCAGGCAGCTCTGCTGCCTAAGGTGAACAAGACTTCTGACCCAGCTGTTTTCTGAGCAGTGCTGGTGTGGGCCGCACCGGAGTC
Rabbit scaffold_86024:2329-2415 + GACGG--CT-GGGAC----AGGCA-------------------------AAGGCGTGGGGGGATCAGGACT-GTGACGCAACTGT-GTCTGTGCAGTGCCGGCGTGGGCCGCACCGGGGTG

uc008unn.6 (chr4:120451839-120451911 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr4:120451814-120451936 - ---------**-----------------------------------------------------------------------------------------#########################
TTGTAGTTC--TTATCTAAAGGTTGGCACCAACGCAAGAGGCTGACTGGCTTGAACGCTTTATCTGGTGGTTAACAGTGCAGGCCTACAATCTCTTACAGATGATCAGTGCAGAAGCCCCTGTGC
Rat chr5:141371079-141371187 - TTTTAGTTC--TT--GTCAAG------------GCAAGAGGCTGAGTGGCTTGAATGCTTTATATGATAGTTAACAGTGCCGGCCTACAATCTTTTACAGATGATCAGTGCAGAAGCCCCTGTGC
Guinea pig scaffold_290160:107454-107559 - TTTg--ttTtTTT--GTgAAG----GCACAA---------ACTGAGAGGTTTGAATGATTTG-CTGATGACTGACAGGGAGGGCCTACA-TCTGTTGCAGATGATCAGTGCAGAAGCCCCTGTGC
Rabbit Unknown -----------------------------------------------------------------------------------------------------------------------------

uc008ute.0 (chr4:125994110-125994172 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr4:125994085-125994197 - ---****----------------*---------------------*------------------------------------------------#########################
GGT----CTCAGGCATGGCCCTG-CACAAAGCTGGGAGTGCCAGC-TCTTGGCAGGAAGCAAGGTCAAGTTCCTGTGCCCTGGCTTTCCCACAGGGAATGGCATTGCCGCCTTTGAATC
Rat chr5:145686281-145686387 - G-TCTCACTCAGGCATGGCCCTG---CAAAGCTGGGAGTGCGG-------GGCGGGAAGCA-GGTCATGTTCCTATGCCCCGGCTTTCTCACAGGGAATGGAATCGCTGCCTTTGAGTC
Guinea pig Unknown -----------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_203345:130291-130401 - G-CCTGCTTGAAGCCGAGCCCTGATGCGAGGCAGGTG---GCAGGAGCTGGGTATGGGGCA-CGTGAAGGTCCTGT---CTGGTTTTCCCACAGGGAATGGCATCGCTGCCTTTGAGTC

uc008uzs.1 (chr4:130374430-130374496 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr4:130374405-130374521 + --------------------------------------------------------------------------------------------#########################
GGGGGTGTCCTGCTGGGAAGGCAATGCCTGCCTGGGGACCTGGGGGTGAGGAACACCCACTCCCCAGAGCTTTCCTTTCCCCACCTCCCCAGACTTCGAGCAGGAGTCCGGCCTTGA
Rat chr5:149493401-149493517 - TGGGGTGTCCTCCTGGGACGGCAATGGTTGCCTGGGAACCTGGCGGTGAGGAACACCCACTCCCCAGGGCTTTCCTTTCCCCACCCCCCCAGACTTCGAGCAGGAGTCCGGCCTTGA
Guinea pig Unknown ---------------------------------------------------------------------------------------------------------------------
Rabbit Unknown ---------------------------------------------------------------------------------------------------------------------

uc008vjc.40 (chr4:137091472-137091534 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr4:137091447-137091559 + ---------*****-------------*---------------****--------------*-------------------------***------------#########################
TGAGTCAGC-----CCTGTTCCTGTCC-TGCTTGCGGGGGTGG----GGGTGGGGCTTGAG-CTGGAGCTAGACCTAGACAAGTCTC---TCCCCACCCCAGGCTCTGAGCTCCACTTCCCTAGCGT
Rat chr5:156293041-156293137 + TGAGTCACC-----CCTGTTCCTGTCC-TACTG-----------------GGAGGCTTG----TGGGGCTGAACTTTCACAAGTCTC---TCCTCACCCCAGGCTCTGAGCTCCACTTCCCTAGCGT
Guinea pig Unknown -------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_192398:15341-15457 - A--GCCACCCCAGGCCTGTGCCTGCCCCTGCACACAGGGCTGGATGGGAGGAAGGCCCCTGCCTG--------CACCCATGAGCTCCTACCTCTTTCTCCAGGCTCCGAGCTCCACTTCCCCAGTGT

uc008vjf.34 (chr4:137125120-137125175 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr4:137125095-137125200 + -------------------------------*---------****************----------*-------------------------------#########################
CCAGATGTGCCTATTGGGAGTGTCAATGACA-GGGGAGGAT----------------GGGGATTCAG-GGCAAAGGACCTGACCCTGTCACACCTGCAGAGAGGGCCAGAGAGGCTCCATCCAA
Rat chr5:156327487-156327593 + CCAGACTTGCCTATTGGGAGTCTCAGTGACAAGGGGAGGAT----------------GGGAATTCAG-GGCAAGGGACCTGACCCTGTCACACCGGCAGAGAGGGCCAGAGAGGCTCCATCCAA
Guinea pig scaffold_282851:43033-43153 + CGTGGCTTATCTGTCCAGAGTTTCTGTGCCAAGGGGTGGATTCCATGGGAGGAGGGGAGTCTGTGCCGGGCA-G-GGGCTGACCCAG-CTCCCCTGCAGAGAGGGCCGGAGAGGCTCCATCCGG
Rabbit scaffold_110967:4613-4705 + ATT------C--CTTGGGTGGG---------------------CCTGGGAAGAGGGGGGGCGGTCTGTGGC-AGGGGCCTGACCCAGTTCCA-CTACAGAGAGGGCCGCCGAGGCTCCATCCAG

uc008vmk.14 (chr4:138981549-138981613 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr4:138981524-138981638 + ---------------------------------------------------------**---------------*-----------*-------#########################
CAGCCTGAAGTTGTAGCTATTAGAATTCCCTGGCATGTGTTGGGGGTGGGACTGAAA--GATTACTCTTCTTTC-CCCTCCTGTCA-CCTGCAGATTTACGACCTGTCTATTGATGCCT
Rat chr5:158226699-158226816 + CAGCCTGAGGTTGTGGCGGTTAGAATTCCCTGGCATGTGTTGGGGGTGGGACTGAAACAGATCGCCCTTCTTCC-CCCTCCTGTCACCCTGCAGATTTACGACCTGTCTGTTGATGCCT
Guinea pig scaffold_290263:57502-57618 + TACTCATCAAGTACAGCTGTTAGAATTCACCAGCATACTTGGGGGGTGGAACTGAGATAAATTACCcttcactt--ttgtttttcatcttgcAGATTTATGATCTGTCTGTTGATGCTT
Rabbit scaffold_206751:7242-7359 + CACTCAACAGTTGTAGCTGTGTAGATTCACTGGGATAT-TTGGGGATGGGACTGAAAAAGAGCTCCTTTATTTAGTCTTTCTCCCGTTCTGCAGATTTATGACCTGTCTGTTGACGCCT

uc008vns.31 (chr4:140602627-140602686 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr4:140602602-140602711 - #########################-----------------------------------------------**---------------------------###########
TGAACTGGAGCAGCAGCGACTGAGGGTGGGTGACAGGGTGGGGCAGGCGTAGACCTTCCTGCCTCTGCTCTC--CTCCTGACGCCCCTCCTCCTCACCTAGGACACAGAACA
Rat chr5:159904597-159904704 - CGAGCTGGAGCAGCAGCGACTGAGGGTGGGTA-CAAGAAGGGGTAGGCATAGACCTTTCCGTCT---CCTACTCGCCCTGACTCCCCTCCTCCTCACCTAGGACACAGAGCA
Guinea pig scaffold_78804:255-366 - AGAGCTGGAACGGCACCGGCTGAAGGTGGGTACTGGGGTGAGGCAGGGCTGACGACCCTCAGCTCTGCCTGCCAAGCCTTACGCTCCCCACTCCCACCCAGGACACGGAGCA
Rabbit scaffold_123160:7881-7895 + -------------------------------------------------------------------------------------------------CCAGGACGCAGAGCA

uc008vrs.0 (chr4:144767999-144768091 -)

mirtron_candidate

Species Coordinate Alignment
Mouse chr4:144767974-144768116 - #########################--------------------------------------------------*---------------*****----------------------------#########################
TCAGGCCCTGGAGGAGAGATGGAAGGCAAGGCATAGAGCCTCTGTGCTTTAGGGGCTCCTGTGACATCCCCAACG-GTGAAGCACTGGCCT-----CTGCTGACACTGGCTCTTTCCCTTGCAGAGTGAGCGGCGGCAGCAGAAGGGAG
Rat chr5:163629368-163629502 - TCAAGCCCTGGAGGAGAGATGGAAGGCAAGGCC--------CTGTGCTTTGGGGGCGCCTGTGACATCCCCAACA-GTGAAGCACTAGTCT-----CTGCTGACACGGGCTCTTTCCTTTGCAGAGTGAGCGGCGGCAGCAGAAGGGAG
Guinea pig Unknown -----------------------------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_192247:11876-12009 + TCACGCCCTGGAGGAGAAGTGGAAGGCAAGGCAGAGGGC------------GAGGCAGCTGTGGTGACCCAGGCAAGATGAGCAGAGGCCTGCATGCTGCTAACACTGGCTCTTTCCTTTGTAGAGTGACCG---CCAGCAGAAAGGGG

uc008vuw.4 (chr4:147968134-147968191 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr4:147968109-147968216 + -------------------******---------------------------------------------*----*---------------#########################
GAGCTGGGGGTGACTGCCT------GCAGGGTGGGGCGAGGGCAGGCACTAAGAGCCCCATCTTGATGCT-CTTT-GTCCCTGGTTCCCAGAGCACCAACTTCCGGGAGCCAGTGC
Rat chr5:165675090-165675195 + GAGCTGGGGACT---GCCT------GCGAGGGAGGGTGTGGGCGGGCACTGAGAGCCCCGTCCTGATGCT-CTTTGGTCCCTGGTCCCCAGAGCACCAACTTCCGGGAGCCCGTGC
Guinea pig scaffold_278409:3729-3831 + GAGCTGGGTGCT---GCCA------G-GGGGCAGGGCAC-GGCGGGCACGGACGGCCCTG-CCTGATGCCACCCC-GTCCCGGGTCCCCAGAACACCAACTTCCGGGAGCCCGTCC
Rabbit scaffold_213614:79950-80063 - GAGCTGGGAGCTGCGCCCCCCAGCGGCGGCGGTGGGTACAGCTGGGCCCCGAGAGCCCGCCCCTGATGGC-CCCT-GTCCCCGGCCCCCAGAGCACCAACTTCCGGGAGCCCGTGC

uc008wai.15 (chr4:151744752-151744818 +)

3p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr4:151744727-151744843 + #########################-----------------------------------------------------------------*--------------------#######
CCGGCTCAAGAACAACCAGTCCAAGGTAGGAGGCACCGGCCGTGGGGCTTATCCCGCTGGGCATGGCCACGGCTCTGTGCCTCCTCACAC-CCCATCTCTTCTCCCCAAAGTTCTTTA
Rat chr5:169601573-169601690 + TCGGCTCAAGAACAACCAGTCCAAGGTAGGAGGCACGGGCCTTGGGGCTTATCCCTCCGGGTGTGGCCGCTGCTCCGTGCCTCTTGACATGCCCCTCTCTTCTCCTCGAAGTTCTTTA
Guinea pig Unknown ----------------------------------------------------------------------------------------------------------------------
Rabbit Unknown ----------------------------------------------------------------------------------------------------------------------

uc008wcl.6 (chr4:154346202-154346257 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr4:154346177-154346282 + -------------------------------*------------------------***--------------------------#########################
ACACTGGTGTACTAGTGTGGTGGGTACACAG-TGGATCTGACTGGACACTGACCAG---TTATGTGTGGGCTTGGGCTGGGGCAGGGTGAAGTCCAGGCACTCTTCCTGA
Rat chr5:171774735-171774838 + ---CTGGTGCACT-GTGTGG-GGGTCCACAG-TGGATCTGACTGGACACTGACCAACCGTTATCTGTGGGCTTGGGCTGGGGCAGGGTGAAGTCCAGGCACTCTTCCTGA
Guinea pig scaffold_276080:8239-8328 + AGTGTGG---CC-AGTG--------GCGCAGCTGGGCCTG--TGGACACTGACCGG---CT---TCCGGGGCCGGGGCGGGGCAGGGAGAAGTGCAGGCGCTCTTCCTGA
Rabbit Unknown --------------------------------------------------------------------------------------------------------------

uc008wfu.3 (chr4:155389918-155389986 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr4:155389893-155390011 + ------------------------------------------------------------------------------------******************----------#########################
ACAGACGCAGACATAGGTACCTGCCTTGTGGGTGGAAGTCTTGGCAGAACTGAAGATGGCTCAGTGCAACTTCCAACACTGTCT------------------CGTCCCACAGTTGTACCTTATCTGGAAAGCAGACC
Rat chr5:172858183-172858319 + ACAGAAGAAGAGAGAGGTACATGTCTTGTGGGCGTAAGTCTTGGCAGAATGGAAGATGGCCCAGTGCAACTTCCACCACTATCTCTAACTAATGGACACCATCATCCCACAGTTGTACCTTATCTGGAAAGCAGATC
Guinea pig Unknown -----------------------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown -----------------------------------------------------------------------------------------------------------------------------------------

uc008wrm.0 (chr5:23933275-23933340 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr5:23933250-23933365 + -------------------------------------------**------------------------------------------------#########################
GTGGCAGACAGCCGAGGCTCCTTTCCTTCCTGGAGTGGGACCG--GGCTAGCCTACTCTTCAGCGATGGTGACTAGCCCTTTCCCCCACTCAGGTTATGCCTCCACCTTGTTGCCCTG
Rat chr4:6115768-6115885 - GTGGCAGACAACTGAGGCTCCTTTCCTTCCTTGAGCTGGGCTGGGGGCTGGCCTACTCTTCTCGGATGGTGACTGACCCTTTCCCCCACTCAGGTTATGCCTCCACCTTGTTGCCCTG
Guinea pig Unknown ----------------------------------------------------------------------------------------------------------------------
Rabbit Unknown ----------------------------------------------------------------------------------------------------------------------

uc008wvj.8 (chr5:30658484-30658547 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr5:30658459-30658572 + ----*-----------------------*****----------*****************---------------------*-------------------------------#########################
GGGG-GGCGACACCCATAGCTCACAGGA-----CTGAGAAGGC-----------------CGGGGATTGCTGAGGTCAGCT-GCTGTGCTCAGTGCCTTCCCTTCCTTCACAGACACTTCATCATCATCGATGAGGAG
Rat chr6:26018833-26018966 - GGGTGGGGAACACTTACAGCTCACAGGATGGGTTTGAGAAGGCGGGGATGGGTGGGTGGGTGGGGATCGTTGATGTCTTCTGGCCATGCTCTATGCTTTCCC----TTCACAGACACTTCATCATCATTGACCAGGAT
Guinea pig Unknown ------------------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_214661:94649-94711 + ---------------------------------------------------------------------CTGGCGCCAGCGGGCCGTGCTCTGTGACTCCC------TCCCAGGCACTTTGCCGTCACCGACGATGAG

uc008wwm.4 (chr5:31222243-31222303 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr5:31222218-31222328 + --------------------------------------*-------------------------------------*-----------##################-------
ACACCCAGAGCAGTGCAAGAGAGCAGATGTTGGGTGAG-GGCATGGTGAGAGATGTCCTATTCACTGTGGTCCCTT-TCTTCCAACAGGTCCTCAAGGGGAGCAGGGTAAGTC
Rat chr6:25440256-25440368 - ACACCCAGAGCACTGCAGGGTAGCAGACGTTCACTGAGGGGCGTAGTGAGAGATGCCCTACTCACTGTTGCCCCTTCTCTTCCCACAGGTCCTCAAGGTGAACAGGGTAAGTC
Guinea pig Unknown -----------------------------------------------------------------------------------------------------------------
Rabbit Unknown -----------------------------------------------------------------------------------------------------------------

uc008wwz.19 (chr5:31370961-31371046 +)

mirtron_candidate

Species Coordinate Alignment
Mouse chr5:31370936-31371071 + #########################-------------------**-------*****----*------------------------------*---------****---------*--------#########################
GTGGCGAGAGCTCAGTGACCTTGAGGTGGGCTGGGGTCTGGCAG--GAAGCCG-----CGGG-GCGGATGTCGCTTGTGGGTGAGTGTGAGCA-CCCCACTGA----CCCTCCTGT-CCCTGCAGTCTGCTCGCCAGTTCTGCCACACGG
Rat chr6:25281800-25281940 - GTGGCGAGAGCTCAGTGACCTCGAGGTAGGCTGGGGTCTGGCAG--GAAGCCGGGTTGG-GG-CTGGATGTTGTCTCTGAGTGAATGTGACCGGCCCCACTGG----ACTTCCTGT-TCCCACAGTCCGCTCGCCAGTTCTGCCAGACCG
Guinea pig scaffold_264325:11648-11796 - GTGGCGGGAGCTCAGTGACCTAGAGGTGGGCTGCGGGCTGGTGTGGGCAGAGGGGCTGG-AGCCTGAATGATGCTTGTGGATGAATATGACCAGTCCCACTAAGCTCCCTTCCTGGCTCCCTTAGTCTGCTCGCCAGTTCTGCCAGGATG
Rabbit scaffold_203841:113496-113632 - GTGGAGGGAGCTCAGCGATCTAGAGGTAggccgggggccggggc--ctcgtgg-----gcgg-ccgggcggTGTCGGTGCAGGAGCGTGGCCAG-CCAGCTAA----CCCCCCTGCCTCCCTCAGTCTGCGCGCCAGTTCTGTCAGACCG

uc008wwz.29 (chr5:31375802-31375863 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr5:31375777-31375888 + -------------------------------**---------------------------------------------***-----------#########################
TGTTCTGAGAAAGAATGCCAAGCATAGAGAC--GGAAGGGCAGGGCATGTCACGTCGGGGACCTCCTGTGAATTGTCC---TCTCTCCCCAGATCCTGTTGATTAAAACTGCAAAGG
Rat chr6:25277333-25277449 - TGTTCTGAGGAAGAATGCCAAGCACAGAGACTGGGAAGGACAGGGCCTGCCATGTCAGAGGCCTCATATGGACTGTCCTCCTCTCTCCCCAGATCCTGCTGATTAAAACTGCAAAGG
Guinea pig Unknown ---------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_203841:109392-109503 - TCT-CCCAGAAGGGATCCTGGCCACGGGGACTCTGCAGGGCTGGGTGGGT---GAAAGGCGCCGCCTCCGGACTTCCACGCTCTC-CCCCAGATCCTGCTGATCAAAGCCGCGAAAG

uc008xvf.4 (chr5:77285290-77285362 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr5:77285265-77285387 + -------------------------------------------------------------------------------------------################################
CTGCCCTCTGGATGTTAAGAGCGCCGTGCCTGGCATGTTGGTTAGGGAGGTGTGGGAAAAATGCTAATCGCGCTTCCCTTCCCAATGCCAGGACCGACAGAATGAACCGGGCAGCTTTGAGAG
Rat chr14:33592246-33592358 - ---------GGGAATTACGAGCGCTGGGGCTGGGACCTTAGTTAGAGCAGTGTGGGAA-AAGGCTAATTGTGCTTTCCTTTCTCACATCAGGACCGACAGAATGCACCAGGCAGCTTTGAGAG
Guinea pig scaffold_287931:44788-44832 - -----------------------------------------------------------------------GTTTCCCTTCTCCATGTTAGGATCGACCGAGTGAGCCAGGAC-------TGG
Rabbit Unknown ---------------------------------------------------------------------------------------------------------------------------

uc008zeg.21 (chr5:116042008-116042073 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr5:116041983-116042098 + -------****----------------------------------------------*--------------------*------------------#########################
CAATTCT----GGAAGCCAGGGGGCTTTCTTTCCTCTGGGGGAAAGGTAGATCTGCC-TGTGGATGTAGAACTGGCTT-CTGACCCTGGTCCCTCAGGAAATAAAGAAAAAGAAAGGCATAA
Rat chr12:42287474-42287587 - GAATTCTT---GGAAACCAGCGAGC----TTTCCTCTGGTGGGAAGGTAGATCTGTCTTGTGGATGTAGAGCTGGTTT-CCGACCCCGGTCCTTCAGGAAATAAAGAAGAAGAAAGGCATAA
Guinea pig scaffold_281145:113596-113713 + GTGCTTTTTGTGGAAGCAAGTGCAG----CATCCTGTGGTTGGGAGGCAGGTCTGTTTCTTGGAGATGGAATTGGTTTGCTAACCTTGGTCCTTcaggagataaagaaaaagaaaggtataA
Rabbit scaffold_204309:93045-93162 + GTGCTTTTGGTGGAAGCAGGCTCAC----CTTGCCCTGGTAGGGAGGGTGGTCTGTTCCATGGCGATGGAATTGGTTTGCTAACCCTAACCCTTCAGGAGATAAAGAAGAAGAAAGGCATAA

uc008zhj.10 (chr5:120977678-120977749 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr5:120977653-120977774 + -------------------------------------------------------------------------------------------------#########################
ccgcccccccccccccgcccTGCGTCACTGTGGGGGCTAGCGGGAGGAAGTGGGGAGCCAAGCCTGGGGGATCCCAGTTCCCCTTCTTGCCCCACAGATGGCATCTATGAGATCGGCGGTCT
Rat chr12:37234774-37234879 - ----------------GCCCTGGGTCACTGCGGGGGCTGGCGGGAGGAAGTGGGGAGGCCATCCTGGGGGATCCCAGTTCCCTTTCTTGCCCCACAGATGGCATCTATGAGATCGGTGGCCT
Guinea pig scaffold_275316:5297-5334 - ----------------TC--------------------------------------------------------------------TCTGCCCACAGACGGCGTCTATGAGATCGGTGGCCT
Rabbit Unknown --------------------------------------------------------------------------------------------------------------------------

uc008zos.2 (chr5:124439880-124439945 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr5:124439855-124439970 + --------------------------------------****************************-----------------------------------------------------#########################
CTGTCCTCCTGGGCTGGGGGCTGGACACCCTGCCCAGT----------------------------GCTGGGAGGGACGGCTCAGGTTCTGTGTCCTCCCCTCCCTTCTCTGGTTGCAGGTCCTGCATGACTATCAGCGGTACC
Rat chr12:33727355-33727497 - CTGTCCC-CCGAGCTGTGGACTGCACACCCTGCCCAGTGCCTGCCACCTTGTCCGTCCTGCCCTGTGCTGGGAGGGACCCCTCAGGTTCTGTGTCCTCACCCTCCTTCTCTGACTGCAGGTGCTGCATGACTGCCAGCGGTACC
Guinea pig Unknown ------------------------------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown ------------------------------------------------------------------------------------------------------------------------------------------------

uc008zos.26 (chr5:124451145-124451214 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr5:124451120-124451239 + ---------------------------------------------********--------------------------------------------------#########################
GGGTGGGGTGGGCACGGTGCTGAGGTTGGCTGTGGGGGCTTGCCA--------GACTGTTCATGATGTGGAAACCCAGACTCTTGGTTGGCCCGGCCCCACAGGGAGTCAGCTGACAAGGTTGTGCTT
Rat chr12:33716262-33716380 - GGGTGGGATGGGCAAGGTGTTAAGGTTGGGTGTGG-GGCTTGCCA--------TACTGTTCATGATACAGAAACCCAGACTCTAGATTGGCCTGATCCCTCAGGGAGTCAGCTGACAAGGTTGTGCTT
Guinea pig scaffold_225154:3436-3545 - GGGTC---TGGGCTCTGAGCCGGGGA-GCctgtg---gcatggcggggctgggTCCTGAGCACGAT-----------GTCTCCCTGCTCGCCCCGCCGCATGGGAGTACGGCAGACTGGGTGGTGCTG
Rabbit scaffold_141351:4249-4327 - GGGGGGGCAGTCCTCGGGGCGG-------------------------------------------------AGCCCAGGCCCCTGACGGGCCCCTCCCCTCAGGGAGTCAGCTGACAAGGTGGTGCTG

uc008zqv.19 (chr5:125516497-125516558 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr5:125516472-125516583 - ---------------------------------------------------------------------------------------#########################
CTCTGTGCATGCCTTGCGGGGTGGGGGAGTGGGTGGGGTGTGAGGAGTCACCCACAGATCCGGGTGCCTGCCACTCCACCCCTACAGGGCACGCCCGCAGACGTCCTCTACA
Rat chr12:32706669-32706754 + T-------ATACCTTGTGGGGTGGGGGAGTAGGTGATGTGTCAGGAGTCACCC-------------------ACTCTACCCCTATAGGGCACGCCAGCAGACGTCCTCTACA
Guinea pig Unknown ----------------------------------------------------------------------------------------------------------------
Rabbit Unknown ----------------------------------------------------------------------------------------------------------------

uc008zzm.9 (chr5:136508070-136508129 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr5:136508045-136508154 + ------------------------------------------------------***************-------------------------------#########################
TTACCTGGACCTGCACTGGCCCACCACATGAGGCCAGGGCAGTGTGGCGGAGCC---------------TCAAAGGGATGTCCTTCCACCTACCCGGCAGGTCCTGGAGCTCCTGAAGGTGGCCT
Rat chr12:21759047-21759171 - GTACCTGGGCCTGCGTGGGCCTACCTCATGAGCCAAGCGCAGTGTGGCAGAGCAGAGCCCCAGTGGCTGTCAAAACGATGTCCTTTCCTCTTTCCGGCAGGTCCTGGAGCTCCTGAAGGTGGCCT
Guinea pig scaffold_211692:7203-7229 - --------------------------------------------------------------------------------------------------AGGTCCTGGAGCTCCTGAAGGTGGCCT
Rabbit scaffold_144034:5547-5590 + CCACC---------------------------------------------------------------------------------CCCGTCCCCGGCAGGTCCTGGAGCTCCTGAAAGTGGCCT

uc009acd.3 (chr5:137753272-137753347 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr5:137753247-137753372 - #####--------------*--------------------------***--------------------------------------------------------#########################
CTTTGGTGAGCTGACTGCT-GGATAGGGTGGAGACAGGGAGGAGAC---AGAGGATCTGCTGTTGTGGGTCTGTGGAGGCTGATCTCGTTCCTCTCTGTCCTCAGGTCGGTGTGGTGGCTGTGGCGAAGA
Rat Unknown ----------------------------------------------------------------------------------------------------------------------------------
Guinea pig scaffold_264126:3648-3773 - CTTCGGTGAGCTGACTGTGAGGGTGGGATGGGAATAGGGAGG-GAC---AGCAGCCCTGGTGTCCTGGGTCTGCGTAGATTGATCCCATCCACCCCTGTGTCCAGGCCGATGTGGCAGCTGTGGAGAAGA
Rabbit scaffold_186632:5922-6039 - CTTTGGTGAGCG---------GGTGCCGCGGGCAGGGGGCGG-GAGGGTGGCGCGTCTG--GCCCAGGGTCTGTGCGGGGTGACCCCGTCCTTTCCTGTCCCCAGGCCGATGTGGCGGCTGTGGAGAAGA

uc009aiz.8 (chr5:143195847-143195909 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr5:143195822-143195934 + ----------------------------------------------------------------------------------------#########################
CAGGCACAGGGTGTAACTGGAGGGCCTGGCTGGCAGAGAGACGGGCTTATGGCTAGGTGGGTAATCCCAGACTCCCTGCTCTCTGCAGATCCTGGCAGCCCTGCCCGTGGAGT
Rat Unknown TGGGGACAGGGTGTAGCTGGAGGGCCTG-T---CGGAGGGAGAGGCTCATGGCTTGGTGGGTAATC--------CTTGCTCTCTGCAGATCCTGGCAGCCCTACCCGTGGACT
Guinea pig scaffold_221161:3763-3801 - --------------------------------------------------------------------------CTCACTCCTTGCAGATCCTGGCCGCCCTGCCAGTGGACT
Rabbit Unknown ------------GCAACCAGGGGGTTTG-CAGGGAGGGAGGCGGGGCTCT-----GGCAGGCAACCC-------CTGGCTCCCCGCAGGTCCTGGCAGCCCTGCCCGTGGACT

uc009alv.2 (chr5:145642689-145642759 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr5:145642664-145642784 - ---------***-----*******-------*****-------------------------******************------------------*--------------------------------#########################
TGTCACTGC---TTCTT-------GAGTCTC-----GGTAGTCTTGGGGGAGGGGCGGGGG------------------CAGTGTTTTGTGCATCTG-AGGGTAACACTCAGCCTGGCGCCCTTCCCCAGCTGATAATAGGTGGGCTGGATAAGA
Rat Unknown TGTCAGTGC---TTCTT-------GAGTGTC-----AGGAGTCTTGGAGGAGGGGTGAGGG------------------CTGTGTCTGGGGCGTTTT-AGAGT----------A-----CCCTTCCCCAGCTGATAATAGGCGGCCTGGATAAGA
Guinea pig Unknown TGTCCATGCAGCTCCTTCCTGTCTAAGCATCTGTCAGGCAGATTTGGGCAA--------AACTATTTCCTGGCTTTGGGCATTGAATCTTTTAATTGCTGTGTATCACACAGTG-----TGCCTTCTCAGTTAATAATAGGTGGCCTGGACAAGA
Rabbit scaffold_142540:469-504 + -----------------------------------------------------------------------------------------------------------------------CCCCTCCCCAGTTGATCATAGGCGGCCTGGACAAGA

uc009bdn.39 (chr6:29406668-29406736 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr6:29406643-29406761 + *--------------------------------------------------------------------***--------------------------#########################
-TCAGGCCTGAGCAGAGAAGGGGGTTCACCGAGGAGGGAGGGGTTCATGGAGACTGGATACAGCCTCTT---GGTCTGACATCACCCCAACCCTTCAGGTGAGGCCAGCTCTCAGGACATGAC
Rat chr4:56336577-56336699 + GACAGGTCTGAGCAGAGAATGGGGTTCACCGAGGAGGGAGGAGACCACGGAGAACAGATACAGCCTCTTGTTGGCCTGACATCACTCCAACCCCTCAGGTGAGGCCAGCTCTCAGGACATGAC
Guinea pig Unknown ---------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown ---------------------------------------------------------------------------------------------------------------------------

uc009bhz.2 (chr6:34836179-34836244 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr6:34836154-34836269 - -------------------------------------------------------------------------------------------#########################
GAGGCCCCTGGCCACTAGAGCAGCTGTCACAGAGGGTAAGGGGACCCTGCTATGCCCTGTGACCTTAACAGGTGTGGCCTTGCTCTCTCAGACATGCAGCAGCACGAGTGTGCTAT
Rat chr4:62271837-62271944 - GAGGCCCC-------TAGAGCAGCTGTCACAGAGGGCGAGGGTCCCCTGCCATACACTGAGGCCTTACCAGGTGTGGTCTTGCTGTC-CAGACATGCAGCAGCATGGATGTGCTAT
Guinea pig Unknown --------------------------------------------------------------------------------------------------------------------
Rabbit Unknown --------------------------------------------------------------------------------------------------------------------

uc009caf.6 (chr6:54888216-54888283 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr6:54888191-54888308 - -------------------------------------------------------------------*--------------------------#########################
TGGAAATCAGTAGGCGGCATGTACCCACTGTAGGAGAGAGTGTTCAAGCGACAGTGAAACTTATAAA-GCCCCTGGCTGTGCTTTCTCTCCAAGTTTATACAACAACCAGATAACTGAT
Rat chr4:83411237-83411355 - TGGGAATCAGTAGGCAGCATGTACTCAAGGTGGGAAGGGGTGCTCAAGTGACAGTGAGACTTACAAAGGCCCCTGGCTGTGCTCTCTCTCCAAGTTTATACAACAACCAGATCACTGAT
Guinea pig Unknown -----------------------------------------------------------------------------------------------------------------------
Rabbit Unknown -----------------------------------------------------------------------------------------------------------------------

uc009cly.6 (chr6:83006471-83006535 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr6:83006446-83006560 + ------------------------------------------------------------------------------------------#########################
TGTGGTGGAAGTGGGGGGGTCCCTCCCTCCTGGGGAGAAGGGGAAGAAGACCTGACGAGGCTACAGCTATAACCTTCCAATTCTCCCTAGCTGGTGGCCAAAGAATTGGGCCAGA
Rat chr4:117267413-117267522 + CATGGTGGAGGTGGGGG---CCCT--CTCCAGGGGAGAAGGGGAAGAAGGCCTGAAGAGGCCACAGTTAAAACCTTCCAATTCTCCCTAGCTGGTGGCCAAAGAATTGGGCCAGA
Guinea pig Unknown -------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_128785:6368-6465 + CAGGGCGGAGGTGGAGC---CCCTCCTCCT-------------TAGAAGGCTTGAGATCTTGACACT-TCAATCTTCCAATTCTCTCTAGCTGGTGGCCAAGGAATTAGGCCAGA

uc009dpr.2 (chr6:122781393-122781453 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr6:122781368-122781478 + ---------*******--------------***********----------------*------------------------------------------*-----#####################*####
CCTGGAACT-------ATGTTCTTCTGTGT-----------CCCTTTGGGGAACACT-GGGGCATACCCAATGCTCAGACCTAACTTGCTTCTTTGTTTC-CCCAGAATTCCATTCGACACAACCTT-TCCC
Rat chr4:159306986-159307103 + CCTGGAACTTGACTGAATGTTCTTCTGTGT-----------CCCTTTGGGGAAAACT-GTGGTTTACCCAATGCTCAGACCTAACTTGCTTCTTTGCTTC-CCCAGAATTCCATTCGACACAACCTT-TCCC
Guinea pig Unknown ------------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_214723:56429-56544 - CT--------------ATGTTCTGTTGTGTTCTCTCTGCATCCTATTGG-AAACACTTCTGCTTTGTTCAGTGCTGAGGTCTAATTT-CGTCTCTGCTTCTCTCAGAATTCAATTCGGCACAACCTTTTCTC

uc009drf.7 (chr6:124652369-124652429 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr6:124652344-124652454 + -----******---------------------------------------------------------------*------------------#########################
AGTAG------TATGTCACATTTAGACAAGCTGAGAAAAGGGGAGGCTTGGAGGCGGCGAGTGGCGAGAGCCCT-AACCATCCTTCCCTTCAGGAAGGAGTGTGCATTCTGTCGGGCC
Rat chr4:160825314-160825430 + AGTAGAGAAAATGAGTCACATTTAGACAAGCTGGGGGGAGGGGAGGCTGGGAGGATGAGAGTGTCGAGAACCCT-AACCGTCTTTCCCCTCAGGAAGGAGTGTGCATCTTGTCAGGCC
Guinea pig scaffold_277986:56506-56573 + GG--------------------------------------------------GGCAGGGAGAGGCCAAGACCCTGAGCTGTCTTTTGCCTCAGGAAGGAGTGTGCATCTTGACGGGGC
Rabbit Unknown ----------------------------------------------------------------------------------------------------------------------

uc009dsx.4 (chr6:124974690-124974763 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr6:124974665-124974788 + ####################################**###*****##################**###################################################################
GTGGTGGTGAGGGGTTACTTAGACAATGGTCTGGGG--AAA-----TGAGGTGGATGACTGTCA--GATGAACAGCGTGACCCCATCTCCCTTTTCTCCCAACCCCAGGTCCTGGTTTGGTAATCACATCCCC
Rat chr4:161145496-161145620 + GTGGTGGTGAGGG-TTAATTAGACAATTGTCTGGGG--A----AAATGAGATAG-TGAGTGTCAAAGATGAACAGCGTGACCCCATGTTCTTTTCCTCCCCACCCCAGGTCCTGGTTTGGTAATCACATCCCC
Guinea pig scaffold_289653:55952-56079 - GGGGTGGTGGGGG----ATTAGACAGCTATCTGGGGGGAAATAAGATGAAACAG-TTTGGATCAGAACTGAACAAAATGACACTGTCTCCTCTTTCTCCCAATCCTAGGTCCTGGTTTGGTAATCACATCCCC
Rabbit Unknown -------------------------------------------------------------------------------------------------------------------------------------

uc009dtd.3 (chr6:124997403-124997499 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr6:124997378-124997524 + ---********************----------------------**---------------------*****--------------------------------------------*------------------*-----*------############################
GAG--------------------TCAGAGGGAGAAGAGGCCAACT--CCAGCTAGGAGGGAGCGGCAC-----TGCCTGGACCAGGAGCAAAGAGAACTTAACCCATCTTTTTGTCT-CTGCCTCCCGGCTTACCC-TTTCT-TCCTAGAAGGCCGGACCCAAAAGGAGAAAAAAGC
Rat chr4:161167698-161167861 + GGGCCGTGAGATGGGGCGAAAGGTC--AGAGAGAAGAGGCCTACT--CCAGCCT-GAGGGAGCAGCAC-----TGCCTGGATCAGGAACAAAGAGAACCTAACCCATCTTTTTGTCT-CTGCCTTCTGGCTTACCC-TTTCT-TCCTAGAAGGCCGGACCCAAAAGGAGAAAAAAGC
Guinea pig scaffold_289653:37224-37369 - GAA--------------------GCA-ACGGAGAAGGTGC-GGCT--CCAGCCC-ATGGGAGGAGACC-----TggcagggaggagggggaggaggccTTAACCCATCTTCCTGTCTTCTGCCTTCTGGCTCCCGC-CCTCTCCCCTAGAAGGCAGGACGCAGAAGGAGAAGAAAGC
Rabbit scaffold_203664:46435-46591 + GAG--------------------TCCAAGGGAGAAGCAGCCAGCTTTTCACCCCCGAGGGCGGGGCACAGGTTTGGAAAGAGGGGGGAGAAGGAGGACTTAACCCGTCTTCCTGTCTCCCCGCCTCTGGCTCCCCCACTTCTCCCCCGGAAGGTCGGACTCAGAAGGAGAAGAAAGC

uc009dtn.10 (chr6:125090467-125090552 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr6:125090442-125090577 + ---------------------------------------------------------------------------------------------------------------#########################
CAGAAAGGAGTTGGCCTTGGAGGGATGGGATTGGGCTGGGGAGGAGGTAGTGGGTGTGAGGCAGAGGAAGTGCTGCTGAGCTGGCTGGCACTCCCTGCTCCCTGCCCCTAGCTCAGCTGATGAAGAACACAGGAGT
Rat chr4:161260293-161260400 + CAGAGAGGAGCTGGCCTTGAAGGGATAGGCTTGGCCTGTGGGGT-----CTGGA----------------TGCTGCTGAGC---CCTGCACTCCT--CTCCCT--CCATAGCTCAGCTGATGAAGAACACGGGTGT
Guinea pig Unknown ----------------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_199228:103978-104092 - CAGAGGGGAGCAGGC--TGAAGGGCTGAGACTGGGGTGGAG--G-----ATGGGTGTGGGG-----------GTGCTGA-CTGCTCAGCACCGTGGAACTCCTGTCTGTAGCCCAACTGATGAAGAACACGGGTGT

uc009elq.8 (chr6:135730355-135730421 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr6:135730330-135730446 - --------------*-------------------------------------------------------------------*-----------#########################
AACAGCTTCTAAGA-CAATTCAGAGAGGACCAGGAGAGGCTAGAGAACTATCTACGGCTTATGGCTGCTGAGTTCTTCGTTC-TCTCTGTGCAGGTGGGAAAATGGAAAGACAAGTCCC
Rat chr4:172772327-172772443 - AACGCCTTCTCAGA-CAATTCGGAGAGGACTGGGCGAGGCTAGCGGGCTACCTGTGGCTTATGGCTCCTGAGTCCTCTGTTC-TCTCTGCGCAGGTGGGGAAATGGAAGGACAAGTCCC
Guinea pig scaffold_278264:273584-273698 + AACAGGTTCATGGAAGGATTCAGGTAATGCTGAGAAAGGCTCTTATG----TCTTGGCCAGTGtTTTgTGtGTtTTTTgTGCATTCCTGTGCAGGTGGGAAAGTGGAAAGACAAATCCC
Rabbit scaffold_212419:71218-71331 + AACAGCCTCCTGGG-AAGTTTTACCAATGATAGGCGAGATCACTATG----TTGTGTCCCATGGTTTCTGAGTCTTTCCTTCATCCTTGTGCAGGTGGGGAAGTGGAAAGACAAATCCC

uc009ese.1 (chr6:146554813-146554881 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr6:146554788-146554906 - -------------------------------*----------------------**--------------------*---------------------#########################
CCCTTGTCAGTGCTGAGACAGCACGAGGCCA-CCGAGAGAGCTGGAGGCTGCTC--TCATTCCAAGGGTGATACCT-GTCTCCTCTGCTCTCCCGCAGTTGAACATCCTGGCTTGTGGAGTCG
Rat chr4:184182575-184182690 - TC---ACTAGCCCTGAGACAACATGAGGCCA-CCGTGAGAGCTGGAGGCCGCTC--TCATTCCATGGGTGACACCT-GTGTCCTCCGCTCTTCCACAGCTGAACATCCTGGCTTGTGGAATAG
Guinea pig scaffold_160323:1558-1656 - ------------------------GAGGCCAGTTGTGACAGTTAGCAACTATTCCGTTCCCCCAGGGATGATGACTCAGGTTCCCCCTTCTTCCACAGCTGAACATCCTGACCTGCGGAGTGG
Rabbit scaffold_211272:63467-63523 + ----------------------------------------------------------------AGCGTGGTGCCT-AACGCTTC-CCTCCTCCGCAGCTGAACATCCTGGCCTGTGGAGTCC

uc009evd.0 (chr7:3569152-3569218 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr7:3569127-3569243 + --------------------------------------------------------------------------------------------#########################
GGCAGTCACGAGGGTGCAGAGCAGGGGTGATACGAGAGTGTTAGAGGTCACCGCAGTAGTCCCCAAGGGTGACTGTCTTCTCACCTCTCTAGGAATCTCTGCCTTCCTCAAGAATGC
Rat chr1:63912864-63912978 - AGCAGCCAATAGGGTGCAGAGCAGGGGTGATACGAGAGTGTTAGAGGTCACCGCAGCAGTCCCCAAGGGCGACTTTTTTCTCACCT--CTAGGAATCTCCGCCTTCCTTAAGAATGC
Guinea pig Unknown ---------------------------------------------------------------------------------------------------------------------
Rabbit Unknown ---------------------------------------------------------------------------------------------------------------------

uc009ewc.4 (chr7:3665887-3665942 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr7:3665862-3665967 - -------------------*********************---------**---------------------------------------------*--------#########################
AAAGACCCCTTCCTTCCTT---------------------CCCTGAACA--TGCCCAGGGGAGGGGCTTCCCATCCTCCTAGCTGAGACTCCCCTC-CCTTGCAGTCCAGAAAGAGAAAGACTTGCAACT
Rat chr1:63817815-63817908 + A------------TTCCTT---------------------CCCTGCACA--GGCCTGGGGGAGGGGCTTCCCATCGTCCTAGCTCAGAATCCTTTC-CCTTGCAGCCCAGAAAGGGAAAGAATTACAACT
Guinea pig scaffold_171029:5795-5900 + A------------TCCCAGGgTTggTTggTGTggTGgtTGGCCTGCGGACTG----------GGTGG-TTCTGACCTCCTGGCCGGGACTCTGTCCATCTCCCAGCCCAGAGAGA-AGTGACTTCCCATG
Rabbit Unknown ----------------------------------------------------------------------------------------------------------------------------------

uc009fep.2 (chr7:13511026-13511085 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr7:13511001-13511110 + ---------------*********----------------------------------------------------------------------#########################
GTTCATTACCTGGGA---------CACCGCCACCTTGTTTAGGGTTGAAAAGGTTGGGGGTGGATATCAGGCTCACGCCTCCCTTTTCTGCCAGAACCCTCTGCAGGTCCTGGTGAATG
Rat chr1:72832237-72832346 + ATGCATCACCTGTGA---------CCCTGCCACCTTGTTTAGGGTTGAGGAGGTTGGGGGTGGATATCAGGCTCACAGCCCCCTTTTCTGCCAGAACCCTCTGCAGGTCCTGGTGAATG
Guinea pig Unknown -----------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_209063:2302-2393 + GCTCATCCCCTGTGGGTGCGATTTCCCTGTTAC-----------------AGGTGTGGGGTGCGT---GGTCTCATAACCCCCT-CTCTCCCAGAACCCTCTGCAGGTCCTGG------

uc009fgw.9 (chr7:16701749-16701812 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr7:16701724-16701837 + ----------------------------------------------------**------------*-------------------------#########################
ACAGGGTGCTCTCTAGGAAACCTCAGGACTGGGGCCAGGGAGGGTTCCAGGA--GAGCAGTGTGTC-ATGGCTCACCCTCTCTGTGCCATAGGTGAAGGAATATGACTCCATCTCCA
Rat chr1:76456462-76456577 + ACGGGGTGCTCGCTTGGAAAGTTTGGGACTGGGGCCAGAGTGGGTTCCAGGACGGAGCAGCGTGTC-ATGGCTCACCATCTCTGTGCCACAGGTGAAGGAATATGACTCCATCTCCA
Guinea pig Unknown ---------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_194041:4028-4118 - AG-------------------------ACCTGGGGCAGGGGGCGGGCCGGGAGGGGCCGTGGCGGCTGGGGCTGAGCGCATGC-CCCGGCAGGTGAAGGAGTACGACTCCATCTCGC

uc009fie.16 (chr7:17425474-17425554 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr7:17425449-17425579 + ----------------*---------------------------------------*-----------------****-----**------------------------*-----#########################
CCACAGTCCTGTGGGA-TAAATGAGGCTTCCCGGAGAAGATAGAGGGAGGAATTGG-AGCTAGTGAGGGGCACT----GTCCT--AACCAGCTGCCTTGCCTTTGTCTC-TCCAGGCAGCCCCCAGCCTCACCTTCAGAG
Rat chr1:77165266-77165393 + CCACAGTCCTGTGAGAGTAAATGAGGCTTCCCTGAGA-AGA-GAGGGAGGGATTGG-GGCTGGAGTGGGACACT----GTCCT--AACCAGCTACCTTCCCTTTGTCTC-TACAG-CAGCCCCCAGCCTCC-CTTTAGAG
Guinea pig scaffold_264968:3718-3845 + CCACAGTCCTATGAAAATGACTAGGGTTGCCCTGGGT-CAC-AGAAGGGAGGCTGA-TCCTGAGGAGAGGCCCTCAGGGTGGTGGTCCAAT------CTCCTCTGTCTCCCACAG-GTGGCTGCAGCCTCA--CTTGGAG
Rabbit scaffold_209535:93779-93893 + GCCCGGTGCTGGAA---CTGCTGAGGTGACCCCAC---CGTGGGCACGGGCACTGGAGGCTGCGCTG---CAGT----GTCGT--CCCCGC------CTCCCCCGTCTCCTGCAG-GTGACTCC-GCCTCG--TGCCGAG

uc009flq.19 (chr7:19979066-19979124 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr7:19979041-19979149 + #########---------*----***-----------***---*************************************************************************-------*********************------------*******-----------------------------#########################
ATTCTCAAGGTGAGTGGG-GAAA---CAGTGCTGTCA---GGG-------------------------------------------------------------------------GGTGTGG---------------------GGGAAGGGCAGG-------CCCTCCGCCTCAGCCTCCTCATCCCCCAGGCCCGGCTAGAGTATCTGCGGGACC
Rat chr1:78911102-78911300 + ATTCTCAAGGTGAGTGGGGGAAT---CAGTGATGTCCtggtggtggtggtggtggtggtggtggtggtggtggtggtggtggtggtggtggtggtggtggtggtggtggtggtggtggtgTCGTCGTCTTGTGGT--------GGGGAAGGGCAGG-------CTCTCCACCTCAACCTCCTTGTCCCCCAGGCCAGGCTAGAGTATCTGCGGGACC
Guinea pig scaffold_279448:89370-89495 + ATCCTCAAGGTGCGTGTTGGGCCAGACACAGCCACAA---CGG-------------------------------------------------------------------------GAAGTAAGGGTGGCATGGG--------AGGGCAGGACAGC-------TTCCCACCAGTCCTCGCCCCGACCCGCAGGCGCGAATGGAGTACTTGCGGGACC
Rabbit scaffold_123083:1602-1719 + ATCCTCAAGGTGGGTgccgcggg---c-------------cgc-------------------------------------------------------------------------ggggcagggacggcgcgggccgggccgcgggcggggcAGCGGCCAGCTC-------GCGGCCTCC---TCGCCCAGGCGCGGCTGGAGTACCTGCGGGACC

uc009fxy.1 (chr7:28959706-28959803 +)

mirtron_candidate

Species Coordinate Alignment
Mouse chr7:28959681-28959828 + #########################--------------------*------------------------------------------------------------------------------#########################
ggacgaggaggtggcggtggccgaggTAAGTGAGGTTGACATGGG-GGTTGGAGCAGGTTCTCGAAGGATGAAGGGAGGGAAGATGTGGGGGCCTCCCTCTCCTACTGCAGCTCTCTCTTACAGGTGGGGGCTTCCAGTCTGGGGGCAA
Rat chr1:83276350-83276498 + ggacgaggaggtggaggtggacgaggtgagcgaggTAGACATGGGGGGCTAGAGCAGGTTCTCAAAGGACATAGGAAGGGAAGACGTGGGGGCCTCCCTCTCCTACTGCAGCTCTCTCTTACAGGTGGAGGCTTCCAGTCTGGGGGCGG
Guinea pig scaffold_280340:33205-33341 - ggc---------GGCGGAGGACGGGGTATGTGAGGCGG-CAAGGG-AGGTGGAA-AGGACCTTCTTGGGCACAAAGAACGAAGAGTTGGAGGTCTCCTTCTCCTACCACAATTTTCTCGTGTAGGTGGAGGCTTCCAGTCTGGTGGCAG
Rabbit scaffold_133049:663-712 - GGAGTTGGTGGCAGAGGAAGACGT---------------------------------------------------------------------------------------------------GCTGGTCGCTTCCATTTTGGAGACAT

uc009fyh.7 (chr7:29102338-29102411 -)

mirtron_candidate

Species Coordinate Alignment
Mouse chr7:29102313-29102436 - #########################----------***-----------------******--------------------------***---------------------#########################
CGTATCTCCCAGGGACCCTACAAAGGTGAGCCATG---GCGTGTGCAGAGGCAGG------GGCTGTGGTGGAGGAAGTCCCATACT---TCTGACTGCCATTCCTTACAGGCTACATTGGTGTGGTGAAGGATGC
Rat chr1:83408815-83408936 - CGTATCTCCCAGGGACCCTACAAAGGTGAGTCATG---GCGTGTGCAGAGGT-GG------GGCTGTGGTGAGGGAAGTTCCATAC----TCTGACCGCCATTCCTTATAGGCTACATTGGTGTGGTGAAGGATGC
Guinea pig Unknown ----------------------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown CGCATCTCCCAGGGGCCCTACAAAGGTGACCTGTGAGACCGTGTGGAGGCCC-GGGGAGGGCGCTGTGCACGAG--CGCCCCA--CCTGGCCTGACCCCCCCTCCCACCAGGCTACATCGGCGTGGTGAAGGATGC

uc009fyn.12 (chr7:29153745-29153798 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr7:29153720-29153823 - ----------------******----------------------*---------------*------------------*--------#########################
GAGGCTGGGGGACGGA------CGCTGGGCCGGGATTCATGGGG-CCATGGGGATCTAGG-TGGTGCTGACTCCCATGT-CCCCACAGAGCGAAGATTTTGACATCTATACAT
Rat chr1:83478572-83478663 - GAGGCCAGGGAAT---------TGCTGGGCTGGGATTCATGGGGGCCATGGGAAT-----------CTGACTCAAGTAC-CCCCACAGAGCGAAGATTTTGACATCTACACAT
Guinea pig scaffold_279733:17072-17183 + ATGACCAGGGGACAGCAGCCTGTGCAAGGCTGGAACGGGTAGGG-GAGCTAGGACCTGGGATCTCCCTGACTGCCATGTCCCCCACAGAGCGAGGATTTTGACATCTACACTT
Rabbit Unknown -----------------------------------------------------------------------------------------------------------------

uc009fyn.8 (chr7:29150565-29150623 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr7:29150540-29150648 - ------------------------------------------*--*----------------------------------------#########################
TTGTGGCAGATGGGAGCCCCGGTATTTTCTGAAGGGCGCCTG-TG-CAGGACGCGCTCAGCTTCCTGCCCTCTCTGCCCTCCTCAGTGCTGTAACCTCAGCGTAAGCGAGA
Rat chr1:83475198-83475307 - TCGTAGCAGATGGGAACCCTG-AATTTTCTGAAGTGTGTCTGGTACCAGGGTGCCCTCAGCATCCCACCCTCTCTGCTCTCCTCAGTGTTGTAACCTGAGTGTAAGCGAGA
Guinea pig scaffold_279733:18592-18646 + CTGAGCTTGGTGggggg------gtT---tGggggg-----------------------------------------------gAGTGCTGCCACCTGAATGTGAGCGAGA
Rabbit Unknown ---------------------------------------------------------------------------------------------------------------

uc009fyt.0 (chr7:29172044-29172105 -)

mirtron_candidate

Species Coordinate Alignment
Mouse chr7:29172019-29172130 - -------------------------------------*****--------------**------------------------------------#########################
ACTTTGGCTGCCCATCAGTTTAGCTCCAGGTTGGGGG-----GAGAGGAGGCTGCA--TCCAGGAAAGTGATGCTGTTGTTCTCTTTTCCACAGCGCCTGGCCCACGAGTGCCTTTCAC
Rat Unknown ---------GCCCATCAGTTTAGCTCCAGATTGGGAGGGCGGGCGAGGG--CTGGAGGTTCTTGCAAGTGACACTGTTGCTGTCCTTCCCACAGCGTCTGGCCCACGAGTGCCTCTCAC
Guinea pig Unknown ------------------------------------------------------------------AGTGATGCTGATGCCGCTCTGTCTACAGCGCCTGGCACATGAGTGCCTGTCAC
Rabbit Unknown ---------GCCCCGCAGGCTGGCCCTTGGCAGGGGG-----GAGGGGA--CTGGAAGATCCC-----AGAGGCTGATGCTGCCCTGTCCACAGCGCCTGGCACACGAATGCTTGTCCC

uc009gao.40 (chr7:29845154-29845220 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr7:29845129-29845245 - -------------------**-------------------------------------------------------------------------#########################
TTTCAGGTATAAGGTGGTT--TAGGTGTCAGGCGGGTTGTAGGGAAGGTATTGGATTGACAGTTGGCATACCCTGACCTATCCCTGCACCCCAGTCCTGGGGCTTCCCAACAGCGTGGA
Rat chr1:84180158-84180274 - TTCTAGGTATAAGGTGATTCATAGGTGTCAGGTGGGTC--AGGGAAGGTAATGGATTGAGAGCTGGCATATCCTGACCCCTCCCTGCACCCCAGTCCTGGGGCTTCCCAACAGTGTGGA
Guinea pig Unknown -----------------------------------------------------------------------------------------------------------------------
Rabbit Unknown -----------------------------------------------------------------------------------------------------------------------

uc009gfe.5 (chr7:31355668-31355719 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr7:31355643-31355744 - #########################-----------****------*******--------------------------------------***-----------------#####
AGTGTGGAGGCAGAGAGCTTGGAGGGTGAGTTGAGG----GCAGCA-------TAGCAGAGGGGAAGAGTGTTCATACCCCATCCTGACTT---CTGGCTCCTCATTCCAGTGGCA
Rat chr1:85615615-85615727 - AGTGTGGAGGCTGAGAGCTTGGAGGGTGAGTTGGGGGTGGGTAGCAAGAACAGTAGCAGAGTGGGAGAGTGTTCATACCCCATCCTGACTT---CTGGATCCTCATTGCAGTGGCA
Guinea pig Unknown --------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_192336:23837-23874 + A----------------------------------------------------------------------------CACTGTGCTGACTCTGGCCC-GCCCCCCCTCCAGGAGC-

uc009gif.4 (chr7:31919351-31919432 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr7:31919326-31919457 - #########################----------------------------------------------------------------****------------------#########################
ATCGAAGATTATTTCCACCACCTGGGTAGGGGACTGAAGGCTGGCGGCGCAGGGGCGGCTGTGGCCCAGCAGGGTACAGACATACCGAG----CCATCTCTTGTCCCTCAGATCGAGAACTCGCCAAGGCAGAAAA
Rat chr1:86180158-86180292 - ATCGAAGATTATTTCCACCACCTGGGTAGGGGACTGAAGGCTGGTGGTGC-GGGGCGGCGGTGGCTCAGCAGGGTGCAGACTTACCAAGAGGCCCGACTCTTGTCCCTCAGATCGAGAACTGGCCAAGGCAGAGAA
Guinea pig Unknown ----------------------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown ----------------------------------------------------------------------------------------------------------------------------------------

uc009gun.3 (chr7:52560451-52560512 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr7:52560426-52560537 - ----------------*-------------------------------------*----------------------------------#########################
ACGAGGCATGAGGAAT-TTGGTGGCTTTGGGGAGGGGACAAGTTCCCAAGTGGT-CCTGCCCTTTGACTCCTGGGACTTGGCCCTGCAGGTGTCTGTCTCTCTAAGGAAGCAGA
Rat chr1:95775410-95775521 - ATGGAGCATGAGGAAT-TTGATGGCTTTGGGGAGGGGACAAGTTCTCAAGTTCG-CCTGCTCTTTGATTCCTGGGACTTGGCCCTGCAGGTGTCTGTCTCTCTAAGGAAGCAGA
Guinea pig scaffold_217718:3955-4065 - GCGGGATCTGAAGCGCACTGGGGAC-GCAGCGGGAGTGGGCGCTCCCAAGCTGCAGGGGGCCTTTGACTCTTGG-ACCC-GCCTACCAGGTGTGCGTCTCTCGAAGGAAGCCGA
Rabbit Unknown ------------------------------------------------------------------------------------------------------------------

uc009guw.3 (chr7:52639256-52639322 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr7:52639231-52639347 - --------------------------------------------------------------------------------------**********------#########*################
CCAGTCCAAGGCCTGTGTTATAAGTTATGTGACAGGGTGGGTGGGGCAGCCCTGTAACTTGTGGAGCTGACTGCCTCCTGCCTGCC----------CTGCAGATCCACATG-GTATACAGTAAACGCT
Rat chr1:95855473-95855576 - CCAGCCCAAGGCCTGTGTTAT------------GGGGTGGGTGGGGCAGCCCTGTAACTTGTGTGGCTGA-TGCCTTCTGCCTACC----------CTGCAGATCCACATG-GTCTACAGTAAACGCT
Guinea pig scaffold_124129:118-175 - AAGGCCCATG----------------------------------------------------------------------CTCACCTGGCCTCTTTCTGCAGATACACATGGGTGTACAGCAAGCGCT
Rabbit Unknown --------------------------------------------------------------------------------------------------------------------------------

uc009gvc.0 (chr7:52677376-52677440 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr7:52677351-52677465 - ####-----------*******************************---------------------------------------------***----------*-------*-------------#########################
CTCAGTGAGTGTCAC-------------------------------CCTGGCTGCTAGTGCTGTGGGAGAGGGCTGTGCGGGAGCGCTCAG---CTCACTCACG-CTGGCTC-CCTCTCTCTGCAGAAGGCGAAACAATGGACACCTCCTG
Rat chr1:95894114-95894229 - CTCAGTGAGTATC---------------------------------CCAGGCTGCTGCCACTGTGGGAG-GGGCTGCATGGGAGCACCCAGGAGCTCCCTCACATTTGGCTT-CCCCTCTCTGCAGAAGGTGAAACAATGGACACCTCCTG
Guinea pig Unknown -------------------------------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_198628:39694-39819 + CTCAGTGAGTGCCAGGGgtGGGgGGGGgGGGGgGTGGgGGGGgGTGGgtGGCTG---------------------GCCTGGGAGAGCTCAG---GCTGACCATC-GGGCCTCTCTCCTCTCCACAGAAGGCGAAACCATGGACACGTCCTG

uc009gzz.10 (chr7:54346205-54346263 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr7:54346180-54346288 - #####################################***########################################################################
GGGGCTGAAGGTGAGCTCTGCAGGGCAATATAGGGGC---AAAGGGCTGCAGCCGTACACTCAGTCTGCGCCTCCCAACTGCCCCAGCTTGCCTGTGGGGTGCTCTGGCTCA
Rat chr1:97642764-97642871 - GGGGCTGAAGGTGAGCTCTGCAGGGCAATATAGGGGC---AAAGGGGTGCAGCTGTCCACTCAGTCTGCGCC-CCCGACTGCCCCAGCTTGCCTGTGGGGTGCTCTGGCTCA
Guinea pig Unknown GGGGCTGAAGGTGA--------------CAGAGGGGCAGCAGGGAGCCCCAACTCTGAACTCAACCCATCCCTCCTGACTGCCCCAG-TTGCCTGCCTGTTGCTCTGGTTCA
Rabbit scaffold_199857:4702-4808 - GAGGCCACAGGTGAGCTCAGCTTGGGGGCTGGGGGGC---GAGTGCCTGCG-CTTGGAGCTCAGTCCGCTCC-CCTGGCCGCCCCAGCTTGCCTGCGGGGTACTGTGGTTCA

uc009hzo.10 (chr7:87365255-87365327 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr7:87365230-87365352 + ----------------------------------------------------------------------**----------------------------#########################
AGCCCTGCAGAATTGAGTTAAGGAGGGCAATACATGCATGGCTGGTAGATCGTGGGCGGTGGGCTCCACC--ACGGCCTGAGTCGTGACCATGCTTGCAGGTGATGGCCGCCTGCACAAAGCAGT
Rat chr1:136023491-136023612 + AGTCCCC-AGGATCGGGTTAAGGACGGGAATGCATATGTGACTGGCAGATCCTGGGCAGTGAGTTCTGCC--AGGGCCTAAGTCATGTTCCTGATTCCAGGTGATGGTCGCCTGCACAAGGCAGT
Guinea pig scaffold_204425:8876-8986 - GACCTGGCTG-ATCAGGGCAGGG------------ATGTGGCTGGTGGGCAGTGGGCTATGAGGCATGGTGAATGGGCTGAGATGCATCCTCA-CCCCAGGTGATGGCCGGCTGCACAAGGCAGT
Rabbit Unknown -----------------------------------------------------------------------------------------------------------------------------

uc009iac.14 (chr7:87430825-87430896 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr7:87430800-87430921 + --------*--------------******----------*-----------------*------------------------------------------------#########################
CTGCGGAT-GAGGGCTAGAGGTG------GGGCTGCCTG-AGCAGGAAGAAGAGAAG-ACATGCATCCTGAAATGTCAGTCCTCTTGACTCTTCCTTCCTGTGCAGGTGTCGCCCATAGAGAGCCTACGCC
Rat chr1:136104027-136104150 + CTAGGGATTTAGGGTCAGAGGTGGGTGGGGGGCTGCTTG-AGCAGAAAGAGGAGAAG-ACTCGCATCCTGAAAT---AGT--CCTTGACCCTTCCTTCCTGTGCAGGTGTCGCCCATAGAAAGCCTACGCC
Guinea pig scaffold_285077:47487-47575 - CTGGG-----------TGGGGTG------GGGCCACGTG-GG---AGGGCAC-------------------AACAGCTTT--CCCTGACGCTGTCTTCCCACACAGGTGTCACCCATAGAAAGCCTTCGCC
Rabbit scaffold_181677:3664-3775 - ggggg-----------gcggg-----gagcggcggccTGCAGCAGAAGGGACAGAGGGGTGTGTGTTTTGAAACCTCTGT--TCTGGACTGT-TCTTCCTCCGCAGGTGTCACCTATAGAAAGCCTGCGCC

uc009iha.10 (chr7:97544930-97544983 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr7:97544905-97545008 + -------------------------------------------------****------------------------------#########################
AGCAGAGACTGTGTGCGAGCCACTTGCACTGGGGTGTCAGGAATGCGAC----ATAAACACTGCCTATTTCTGATGCACCCAGGCGAGTGGCAGTGTGATGAGCGTTT
Rat chr1:147069336-147069439 + AGCAGGGTCTGTGTGTGAGCCGCTTGCACTGAGGTGTCAGGAGCGCGAT----GTGAACACTGCCTGTTTCTGATACACCCAGGCGAGTGGCAGTGTGATGAGCGTTT
Guinea pig scaffold_176154:4268-4373 + GGCAAGGATTAGCTGTGTGACCCTTGTGCTGGGT--TCAGGAAtgttgctgagacaaacactGTATGTTTCTGATGTTTTTAGGTGAGTGGCAGTGTGATGAGTGTTT
Rabbit scaffold_195989:7909-8014 + AGCAAGGATTATATCCATGATCCTTGTGCTGGAT--TCAAGAATGAAATAGAGATGAGTATTGCATGTTTCTAATGCTTTTAGGTGAGTGGCAGTGTAATGAGTGTTT

uc009ijy.27 (chr7:105227414-105227474 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr7:105227389-105227499 - -----------------------------------------------------******--------------------********-------------#########################
CAACTGTCTTTTGGAGCTTGGGGGAGATGGGGGAGGGGTGAGGCAGAGCTGTG------GCGACTTGTTTCTCTGGCCA--------TTCCTTTCCTCAGTACCAGCGGCGCCTCGAGGCAGAGA
Rat chr1:155319051-155319175 - CAACTGCCTTTTGGAGTTTGGGGGAGATGGGGGTGAGGTGAGGCAGAGCTGTGACAAGGGCTACATGTTTCTCTGGCCACACGACTGCTCCTTTCCTCAGTACTGGCGGCGCCTTGAGGCAGAGA
Guinea pig scaffold_77522:1986-1997 + CAGCTGCCTGTT-----------------------------------------------------------------------------------------------------------------
Rabbit Unknown -----------------------------------------------------------------------------------------------------------------------------

uc009ikc.3 (chr7:105274953-105275034 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr7:105274928-105275059 - -----------------------------------------------------------------------------------*------------------------#########################
tTTGTCTGTCTGTGTATCCTACTGATCCTTTCGTGGTAGCCACTTGGAGATGGGATAGTCTCTGATGCGGGGCTGTTTATGCC-CCATCTCCTCTTGTCTCCACACAGGTGGAAGAGAACCGCCAATACCGTA
Rat chr1:155369519-155369647 - tTTTTgTGTgGtTGTATCCTACTGATCCTTTCGTGGTAACCACTGCGAGATGGGATAGACTCTGATGCGG-GCCGTTTGCGCCCCCATCTCC---TGTCTCCACACAGGTGGAAGAGAACCGCCAGTACCGGA
Guinea pig Unknown -------------------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown -------------------------------------------------------------------------------------------------------------------------------------

uc009ipw.2 (chr7:109058863-109058933 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr7:109058838-109058958 + -------------------------------------------------******************************-------------------------*----------------------#########################
CCATGATCCCTTGGCCTGAGGGAGTGAGGCTGGCCTGGGCAGGACAGGG------------------------------CAAGCTTTGGCCTAATTGTCCTTCC-CTGTCTCCTCCCTCTTGGCCAGTACCCGCTTGGCTGTGCTTAGCAGC
Rat chr1:159371722-159371842 + CCATGATCCCCTGGCCTGAGGGAGTGAGGCTTGCCTGTGCAGGGCAGGG------------------------------CAAGCTTTGGCCTGATTGTCCTTTC-CTGTCTCCTCCCTCTTGGCCAGTACCCGCTTGGCTGTGCTTAGCAGC
Guinea pig scaffold_233038:14019-14166 - TCCTGCTCCTCTGGCCTGaggg----aggcttgcttgggctgggcagggcagggcagggcagggcagggcagggtagggtaggcGAGAGCCTGACTGCCCTTCCCCCATCACCTCCCTCTTGGCCAGTACCCGCTTGGCTGTGCTGAGCAGC
Rabbit scaffold_211552:87657-87770 + CCCTGT--CATCGGCCGGAGGTTAATAGACTTGCCTGGGCTGGGCTGGGGTGGT-------------------------CAGACTGTGGCCTAACTGCCTTC-C-C---------CGCCTTGCTCAGCACCCGCTTGGCCGTGCTGAGCAGC

uc009jko.10 (chr7:125918746-125918805 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr7:125918721-125918830 + -------------------------------------------*------------------------------------------#########################
TCCCCTACATCTAGGATAATACGGTTTTATCATGGAAGTGAGG-ACAGGGAGAATGTAACTAACTCTGCACTCCTCTCTCCCACAGGGGGATTTCAGAGTGCCTGCCCCGA
Rat chr1:177000683-177000789 + TCCTCAACATTTAGGATAATACGGCTGTATCATGGAAACGAGGAACAGGGAGAATGTAA----CACTGCACTCCTCTCTCCCACAGGGGGATTTCAGAGTGCCTGCCCCGA
Guinea pig Unknown ---------------------------------------------------------------------------------------------------------------
Rabbit Unknown ---------------------------------------------------------------------------------------------------------------

uc009jqx.7 (chr7:133511878-133511964 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr7:133511853-133511989 - ------------------**------------------------------------------******--------------------------------------------------***--#########################
GTCCCTTGGGTCTACTGT--GCCTCTCCACCTTCTAGGTTGGGGAGGCGCTTTTTCCTGGTT------GTCTTGCTCCCAGAGTCCTACCTAGACGTAATCTCTGACCTTTGGCTTCC---AGGAGATCCCCACAGCCCCTTGGGGGT
Rat chr1:185454017-185454159 - CTCCCTCGGATCTACTGT--GCTTCCACACCTTCTAGGTTGGGGAGGCACTTTTTCCTGGTTTAACCCCTCTTGCTCCCAGAGGCCTACCCAGATGTAATCTCTGGCCTTTGGCTTCC---AGGAGATCCCCACAGCCCCTCGGGGGC
Guinea pig scaffold_293674:36605-36739 + CTCCCTCCATTCTACCCCCGGCTCCCTCGCTTTCTTGGGTTGGGGGCTGC-TTCCCCTGTTGCTACTCCTCTTGCCCC------------TAGACATGATCCTTGACCTTTGAGCCCCCACAGACGATCGCCACAGCTTCTCCTGGGT
Rabbit Unknown ----------------------------------------------------------------------------------------------------------------------------------------------------

uc009jqy.9 (chr7:133518718-133518776 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr7:133518693-133518801 - -------------------------------*******************************-----------------------------------------------------#########################
TTGCTCTCTAACTAGAGGAGTGTGTGTGTGT-------------------------------TAGGGGGTTGCTGAGGGACCTGGACTGGGCTGTGACTCTCTGCTTCCCCCCAGTGTTCATCTCCAGTTACATGGTGTT
Rat chr1:185460768-185460907 - CTGCTCTCTAACTGGAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGGGGGTTGCTGAGGGGCCTGGACTGGGCTGTGACTCTCTGCTTCCCCCCAGTGTTCATTTCCAGTTACATGGTGTT
Guinea pig scaffold_280841:5597-5674 - GTGG-----AAGT-----------------------------------------------------GGGAGGCTG-GGG-ACTTGCCTGGGCT--GACTCTCTGCTTCCCCTCAGTGTTCATCTCCAGTTACATGGTGTT
Rabbit Unknown --------------------------------------------------------------------------------------------------------------------------------------------

uc009jrb.3 (chr7:133553908-133553971 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr7:133553883-133553996 - --------------------------****---------------*****------------------------------------------------#########################
GTGTATTTGAGTGAGCGAGGGCTGTC----ACTCTTGGAAGAAGC-----TGGAGACCAGGAAAAAAAGTGATATCTTTGTCTCTTTTCTTGTTCCAGACTTCCTGAGCCCCCATGGGTCTGC
Rat chr1:185503141-185503254 - GTGTATCTGAGTGTTTGAGGGCTGCC----ACTCTTGGAAGAGGC-----TGAAGACCAGGAGAAAAAGTGACATCTTTGTCTCTCTTCTTGTTCCAGACTTCCTGAGCCCCCACGGGTCTGC
Guinea pig Unknown ---------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_163981:753-856 + GCGTG-----------GGAGGCAGCCTCATGC-CCCGGGACGGGCCGGCCTGCAAGCCAGCAGC-ACGGTGACGC------CCCTCTTCCTCCTCCAGACTTCCTGAGCCCCCACGGGTCTGC

uc009jrr.2 (chr7:133636891-133636982 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr7:133636866-133637007 - -----**-------------------------------------------------------------------**--------------------------------------*****-------#########################
GGAAG--AGGGCTTGAAAAGAGCTGGGTCATTCTCCAGTAGAGAAGTGGCATGAGCGAGCTTGTGCTTTGTCTG--CATAGCAGAATGGGTGGCACTCATACCTCACTTCTACT-----CTGGCAGCACCAGGCGGGGCAGGCCCCTCACC
Rat chr1:185637451-185637588 - GGAAG--AGGGCTTCAGGAGAACTGGGTCATTCTTCAACAGAGAAACAGTATGAGCC----TATGGTTTGCCTG--CATAGCAGAATGGGTGGCATTCATACCTCACTTCTACT-----CCGGCAGCACCAGGCGGGGCAGGCCCCACACC
Guinea pig scaffold_189878:11295-11420 - GGGAGAAAGAGCTAGGCT---------------------GGAGGATCAGGAGTAGCA----AGTGGTTGTCCTGGGTATTGGAGACTGAATGGCACTTACGGCGTTCCTTTACTCATTCCTAACAGCACCAGGCGGGGCAGGCCCCACACC
Rabbit Unknown AGAAGGGAGGGCTAGACAGGGG----------------------------------------ATGGCTGGCCTG--GACAGAGGAGTGGGTGGCACTTAC--C-------TTCCCTTCCCCTGCAGCATCAGGCGGGGCAGGCCCCACACC

uc009jst.5 (chr7:133940423-133940481 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr7:133940398-133940506 - ----------------------*****--------************---------------------*******************---------------------------------#########################
GAGAGGCTACAGTGAAAGGTGA-----AGTTTGGG------------CTGGGTAGAGGAGACAGGGGC-------------------CATAAAGCTGACTGCTGGTCTCCTCCCTGGCAGGTAGATAAGGGTGTGGTGCCCCTGG
Rat chr1:185972277-185972384 - GAGAGGCTGCAGTGAGGGATGA-----AGTTGGGG------------CTGGGTG-AGGTAAAAATGGC-------------------CATAGACCTGACTGCTATTCTCCTCCCTGGCAGGTAGATAAGGGTGTAGTGCCCCTGG
Guinea pig scaffold_212515:238-347 + GAAAGGTTACA-------------TGAAGCTAGGGAAAGAGAAGAGGTCT---AGAGAAGGAAAGGGT-------------------GATAGAGATCATTGTCTTTATCCACCCCAATAGGTAGACAAGGGCGTGGTGCCCCTGG
Rabbit scaffold_204194:16843-16972 - GAGATGCCGCTGCAGAGGTTGACCTGAACTTGGGGGAGCAG--------------AGGAA-CTGGGACTAGTTTATCTCCCTTGTCTCATGTCATTGCCCTCCCACCCCCATCCCAATAGGTAGACAAGGGCGTGGTACCTCTGG

uc009juy.9 (chr7:134450236-134450327 +)

mirtron_candidate

Species Coordinate Alignment
Mouse chr7:134450211-134450352 + #########################----------********************--**------------------------------**************************************************--------------------------------------------------#########################
CGGGATCAGCGCAGACCTCAGCAAGGTGCACAGGA--------------------GG--AGCTGAGGGGTGCTGAGGGATCTAACTGAC--------------------------------------------------TCAGCTGGCTCGGGATAGCACTCACCCTAGTCCTCTCCTTCCCTGAGCAGGGCCATGCAGTTGTGGGAGCTGTTG
Rat chr1:186572410-186572542 + CGGGATCAGCGCAGACCTCAGCAAGGTGTGTGGTG--------------------AT--GAGGGAGGGATGCTGGGGAATCTACCTGAC--------------------------------------------------TCA---------GGGTGACACTCACCCTGGTCCTCTCCTTCCCTGAGCAGGGCCATGCGGTTGTTGGAGCCGTTG
Guinea pig scaffold_268118:7167-7304 + CGGGATCAGTGCAGCTCTCTGCAAGGTGTGTGGTGGCCAGAGGCAATTCGCTGAAGG--AGATGAG---------GGGATGCAGCTGACGG----------------------------------------------------------------GCCCCCCATCCCACTCCTCTCCTTCCCTGA-CAGGGCCATGCTGTTGTGGGGGCAGTTG
Rabbit scaffold_121717:9361-9536 - CGGGATCAGCGCTGACCTCAGCAGGGTGCGTGAGCGCCTGGAGCCGCAGGCTGAGGATGTGCAATG---------GGAATGCACCTGCCATTCCCTCCCACACCCCCACCCCGCCCCGCTCCCCTGCAAAGATCCTGACTCTGCCA-----------------------------TCTTCCCTGGGCAGGGCCATGCAGCCGTGGGGGCGGTTG

uc009kfq.11 (chr7:146760782-146760842 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr7:146760757-146760867 + --------------------------------------------------------------------------------------#########################
TGGATAGCAGCACACCCTTCCCTTCAGAACTTGGAGGATTGCTGGAACCAGAGTCTAGCTAACACTTTGTTCCTGTGTCTCCACAGCTACCCGTACAGTGAGGACTCCAGC
Rat chr1:199390975-199391084 + TGGATAGCAGCACACCCTTTCCTTCAGAGT-TGGAGGACTGCTGAAGCCCAAGTGTAGTTAACACTTTGTTCCTGTGTCTCCACAGCTACCCGTACAGTGAGGACTCCAGC
Guinea pig Unknown ---------------------------------------------------------------------------------------------------------------
Rabbit scaffold_166732:5384-5482 - TGGGTGGC--------CTTCCCTCTGGGACAT-GGGCGTGGCTGGCACCG-GGCACCCCTGACCTTCTGCCTCCCTGTCCC--CAGCTACCCGTATAGCGAGGACTGTGCC

uc009kgl.9 (chr7:147192060-147192123 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr7:147192035-147192148 - ------------********************************------------------------------------******---------------------***************************--------------------#########################
GTTGTGCAGGAC--------------------------------GGTCCTGGAAGTATGTGGCCACACCAGAGTTGTCTG------GGCTTGTGCTGTAGTGGCCTG---------------------------AAACTCTGTGTGACTTACAGTGAGTTCATGGTGGAGGAACACGAG
Rat chr1:199805677-199805772 - ------------------------------------------------CTGGAAGTATGTGACCACCCCGAGGTTGTCCA------GGCTTGTCCTGTAGTGGCCTG---------------------------AAACAC--TGTGACTTCCAGTGAGTTCATGGTGGAGGAGCACGAG
Guinea pig scaffold_176038:572-716 + GTAGTGACAGTG---------AGTCATATTTGCCTTAACGACATGTTTCTAGAAGCATGGGCCAGTTCCTGTGTCACTTAGGGCTGTGCTTATTCTGTGGTGATCTGAGAAGCTGT-------------------------ATGTGGCTTCCAGTGAGTTCATGGTTGAAGAACACGAA
Rabbit Unknown GTG-------ACGGCCCTTGC--------------------AGGGTT----GGTGGAAGCGAGTGCCCCGGGGTGGTG---------------------------CTGGAAGCCGCTTGCTTTGCTCACACCTGGGCCTC--CGGGGCTTGCAGCGAGTTCATGGTTGAGGAGCATGAG

uc009kob.1 (chr7:149762236-149762296 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr7:149762211-149762321 - ################################################################*****#################*##############################
GATGAAAGGTGAGTTCTCTTCTGCCCCATGTGGGTGGGAGAGGGTGGGATGCCAAGGACAGGGG-----TCTCATTCTCTCCCACC-CATAGAAATGGTGCTACCCAGCTCATGTCT
Rat chr1:202823730-202823840 - GATGAAAGGTGAGGACTCTTCTGCCCCACATGGGTGGGGCATGGCAGGCTGCCAAGTGCAGGGG-----TCTCATTCTCTCCCACC-CACAGAAATGGTGCTACCCAGCTCATGTCT
Guinea pig scaffold_264762:1244-1357 + AATGAAAGGTGAGGTATTTCTTGCCACAGGTGAGTAGGG-AT-GCAGG-GGCCAAAGGCAGGAGCTGGGACTCACTCTCTTCCTTTGTGCAGAAATGGTGCTACCCAGCTCATGCCT
Rabbit Unknown ---------------------------------------------------------------------------------------------------------------------

uc009kqs.2 (chr7:152105060-152105128 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr7:152105035-152105153 + ----------------------------------------------------------------------------------------------#########################
AGGGGGATGTGCTTGGTCTGCCCGCTGCCCTGAAGATGCAGTGGTGTGGGGCCTGGAGTCTCCTGGGTGACAGCCCTGCCCCCATGCATCTCAGCAGGAAGATGAAGGTGGTGGAGGCT
Rat chr1:205346824-205346907 + -------CTTGCTTGGCCTGCTCAC----------------------------TGGAGTCTCCTGGGTGACAGCCTTGCCCCCATGCATCTCAGCAGGAAGATGAAGGTGGTGGAGGCT
Guinea pig scaffold_286893:6502-6548 - ------------------------------------------------------------------------GCCTTTATTCTGTGCTTTGCAGCAGGAAGATGAAGGTCTTGGAGTCA
Rabbit Unknown -----------------------------------------------------------------------------------------------------------------------

uc009kyr.1 (chr8:13885882-13885938 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr8:13885857-13885963 - ------------------------------------------------**************************----------------------------***------#########################
ggtggtgGgggGGgAGAAAGTTTCTAACCATATGAGCAGACCTCCAGT--------------------------TTATCATTTTTAAAAACTGTCTGTCTGT---TCATAGCCAGTGGAGCTCAGAGCATCCCTGC
Rat chr16:80561149-80561242 + C-------------AGAAATTTTTCAGCTATATGAGCAGACCTCCAGT--------------------------TTATCAATTTTCTAAAATGTCTGTTTGT---TCATAGCCAGTGGAGCTCAGAGCATCCCTAC
Guinea pig scaffold_287397:18-113 + --------------------TTTCCAAGCACAGGAGCAGGACTTCTgTGGTTTTTgtGTTTTtttttgTTgCTGTT--------------------GTCAATTTCTTTTAGTCAACGGAGCACAGAGCGTCCCTAG
Rabbit scaffold_158007:7312-7352 + ---------------------------------------------------------------------------------------------TCTGTCGGTT--TCTTAGCCAGTGGAGCCCAGAGCGTCGCTCC

uc009mbn.1 (chr8:73293132-73293195 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr8:73293107-73293220 - ------------------------------------------****---------------------***********************--------------------------##############***###########
AGGACTTCATAAAGGGAGGGGGTACTCGCGTTGGTGGTGGAG----GATGAGAGCTCTCCAGGCAGT-----------------------GGCTCCTCTCCTGCTTCACCCCACAGCCAGTATTCACTGA---TGGAGGATGAG
Rat chr16:19178542-19178646 + AG-ACTTCATAAAAGGGACGGGCGCTTGCATTGGTGGTGGAG----AATGAGAGTTCGCCCAGCAGT-----------------------GGCTTCT-------TTCA-CCCACAGCCAGTATTCACTGA---TGGAGGATGAG
Guinea pig scaffold_212379:13115-13236 - C------TATGGGAGG--CAG------------GTTTTGAAGGCCAAATAGAAGTTCTTCAGGTGGTATTGCTGGCCAGCCAGTGAGCAGGACCCCTCTCCACCTTC--CCTGCAGCCAGTATGCGCTGATGATGGAGGATGAG
Rabbit Unknown ------------------------------------------------------------------------------------------------------------------------------------------------

uc009mdi.1 (chr8:73996017-73996093 +)

mirtron_candidate

Species Coordinate Alignment
Mouse chr8:73995992-73996118 + #########################-----------*****************************-----------****-------------------------------------------------------#########################
CGCGGACTCTGTGTGCAAGGCCTCGGTGAGTGTGGG-----------------------------GCTGGGGGTGG----CGTCACTGTCCTGAGGATGAGGGTTGCCAGCTAACCCACCGCTCCCCATCCACAGAACCGCCGTCCCTCAGTATACCTGC
Rat chr16:18643289-18643415 + CGCGGACTCCGTGTGCAAGGCCTCGGTGAGTGTGGG-----------------------------GCTGGGGGTGG----CGTCACTGCCCTGAGGATGAGGCTTGCCAGCTAACCCACCGCTCCCCGTCCACAGAACCGCCGTCCCTCAGTATACCTGC
Guinea pig scaffold_229873:3017-3148 - TGCTGACTCTGTGTGCAAGGCTTCGGTGAGTGTGTTCCGGGGCACCGGGCGGGTGAGTGGGCGGGCCTTGGGGTGCTGGGCG-----CGCCTGAG-----------------------CCTCACTCCTCCCGCAGAACCGACGCCCCTCCGTCTACCTGC
Rabbit Unknown ----------------------------------------------------------------------------------------------------------------------------------------------------------------

uc009met.10 (chr8:74236456-74236531 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr8:74236431-74236556 - ---------------------------------------------------------------------------------------------#################################
GGCCTAGGATTTGCGGGTGAAGTCACGCGCTGGGAACAGGAACAGCCTGTGGGAAGGTAGCAAGCTCGAACTCGCTCCTGTCGCTGTTCCCAGTTGCGCAGAGAAGCCCCTGGCCTCGGAGGAGCC
Rat chr16:18908753-18908876 - AGCAGAGGATTTGCGGGTGCAACC--GTGCTGGGGTTAGGAACAGTCTGTGGAAAGGTGCCAGGCTCAGACTTGCTCCTGTTGCTGTTCCCAGCTGCACAGAGAAGCCGCTGGCCTCGGAGGAGCC
Guinea pig scaffold_283155:1797-1831 + A-------------------------------------------------------------------------------------------GCTGCGCGGAGAAGCTGCCGGCCTCCAACGAGCA
Rabbit scaffold_209227:130087-130127 - G----------------------------------------------------------------------------------CCTTTCCCAGCTGTGCCGAGAAGCCACCCGC---CGATGAGCA

uc009mfq.0 (chr8:74843261-74843324 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr8:74843236-74843349 + ------------------------------------------------------------**-----------------------------#########################
TGCAGATCTTGAGGGCCTAGTTGTTAGACTTTGGGGTGCAGGGTAGCAGGAGGCACCCCC--ACTCACGTCCCGCGCCCTGTCTCCTGCAGCGCTGGCCGCGAAATGAACCCGAGG
Rat chr16:17943306-17943421 - TGCAGACCCCAATGGCCTAGGAGTTAGACTTTGGGGTGCAGGGTAGCAGGAGGAAGCCCCGCGCTCACGTCCCGCGCCCTGTCTCCTGCAGCGCTGGCCGCGAAATGAGCCCGAGG
Guinea pig Unknown --------------------------------------------------------------------------------------------------------------------
Rabbit Unknown --------------------------------------------------------------------------------------------------------------------

uc009mgj.7 (chr8:75198939-75199002 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr8:75198914-75199027 + -----------------------------------------------------------------------------------------#########################
cagtgccagaaatgttgagtttaagaGTCCAGGAAGACAGGATGACCATTCTCCAGCTCTCAGAATGATCCATTCCTTGTCCTCCACAGGGAACATGAGTTGGATCTCATGTCG
Rat Unknown ------------------------------------------------------------------------------------------------------------------
Guinea pig Unknown ------------------------------------------------------------------------------------------------------------------
Rabbit Unknown ------------------------------------------------------------------------------------------------------------------

uc009mlc.0 (chr8:86247802-86247863 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr8:86247777-86247888 - ###########-------****-------------------------------------------***-------------------*-------#########################
GCCAAACACGGGTAAGGG----GCTGGCCTGCAGTGGGGCTGGGAGGGCAGGCCTAGGTGAGCTC---AGCCTCAAAGGCCTCCTTC-TCTGCAGGCTCTCAGGTCCTCAGAATCAGGGA
Rat chr19:26108365-26108477 + GTCAAACACGGGTAAGGG----GCTGGCCTGCAGTAGGACTGGGAGGGTGTGCCTGGCTGAGCTC---AACCTCAAGGGCCTCCTTCCTCTGCAGACCCTCAGGCCCTCAGAATCGGGGA
Guinea pig scaffold_173419:516-632 - AGCAGACCCGGGTGAGGACCGAACCAGTCGGGCGCAGGGATGGCGGGGTGGGGCCCCCTGGGCGCATGGGCCTCACGG--CTGCTCT-CTTCCAGGCCCTCAGGCCATCGGAGTCTGGGA
Rabbit Unknown ------------------------------------------------------------------------------------------------------------------------

uc009mmg.0 (chr8:86736705-86736773 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr8:86736680-86736798 - -----------------------------------------------------------------------------*************-----------------#########################
CTGGGAGGATTCAGAGCCAATGGTTGTAGGGTGGGAAGGGAAAGGGCAGGGTCTGGCTGCACAGATACACACTCTGC-------------CCTCTCCCCACACCCAGGCCCACCAGCGCTGATGAGCATCAT
Rat chr19:25634498-25634629 + CCGGGAAGACACAGAGCCAGTGATTAGAGGGTAAGAAGGGAAATGGCAGGGTCTTGCTGCACAAATACCCACTCTGggTgTggggTgTggggTgTggggTgGCCCAGGCCCGCCAGCACTGATGAGTATCAT
Guinea pig Unknown ------------------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown ------------------------------------------------------------------------------------------------------------------------------------

uc009mod.10 (chr8:87445132-87445194 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr8:87445107-87445219 - ---------*****--------*----------------**********************-------------------------------------------------------#########################
ATTCCTCTC-----CCATTGTT-CCTTGGAAGACCCAGG----------------------GGTGAAGGGCAAGGATCTCACTTCTGAAACCTGCTCTGTGTCCTTGTCCCTGAAGCCTCCTCATTACTTCCATGGGCCAC
Rat chr19:24890758-24890875 + ATTCTTCCCCATCCCCATGGTTCCCTTGGAAAACCCAGG----------------------GGTAAAGGGGAAGGACCTCACCTTTGAAACCTGCA-TATGTCCTTGTCCCTGAAGCCTCCTCATCACTTCCATGGGCCAC
Guinea pig Unknown ---------------------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_124880:500-627 + CTCCCTCGC-----CCCCCACC-TCTGGGGATGCTGCGTGGGGGCGGGTGGGTTGCGGGGTGGGGGAGGGGAGGCCTCGGAGCTCTGAGACCCCGG-------CCCGCGTCTGCAGCCTTCTCATCACGTCCATGGGCCAC

uc009mwj.2 (chr8:97005614-97005679 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr8:97005589-97005704 + ---***********----------**************************----------------------------------*---------------------------****-----------------#########################
AGA-----------CCTCATTTCA--------------------------TAAGGCTGTCACCTACCACCTGGGGCTTCCAAGT-GCCCATTCCCACAGCTGAGGGATTGGG----TCTTGGTCTCCCTGCAGTTTGCATGACAACCAGCTCAAGGAC
Rat chr19:10959176-10959291 - AGA-----------CCTCATTTCG--------------------------TTAGGCTGTCACCCAAGACCTAGGGTTTCCAAGT-GCCCATCCCTACAACTGAGGGATTGGG----CCTTGGTCTCCCGGCAGTTTGCATGACAACCAGCTCAAGGAC
Guinea pig Unknown AGG-----------CGCCAATTGG--------------------------TGAACC----------------------CAGAGG-GCCCATC--TGGGGCTGAAGGATTGAG----CCTCCATTTAAATACAGTTTGCAGGACAACCAGCTCAAGGAC
Rabbit Unknown AGAGGGCTAGGAGTCCTCAGCCCACACCCTAAGGAACACCTGAGAGTGGCTATGACTGTCACTTTCTTATGGGGGTTTCTAAGTGGCCCAGCCCCTAGGCTGAGCACCTGCTCCCTCCTGGGTCTCCCTGCAGTTTGCATGACAACCAACTCAAGGAC

uc009nij.14 (chr8:112080444-112080514 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr8:112080419-112080539 - ---------****---------------------------------------------------------------------------------***********------#########################
TGCCAGAGG----CAGCCAGACTTAAGGCTTCTCAGGGAATTGTCTCAAGCTTGGCTTTCCTCTCAGGCTGCTCAGTGCCTTGCTTGCTCTTCC-----------CTGCAGAGACAACAGCATTGTGATCGTGGTC
Rat chr19:39423981-39424099 - CC-CGGAGG----CAGCAAGACTTAAGGCTTTGTGGGGAGTCTTCTCAGA-TTGACTTCCCACCCGGGCTGCTCAGTGCCTTGCTTGCTCTTCC-----------CTGTAGAGACAACAGCATTGTGATCGTGGTC
Guinea pig scaffold_279776:8319-8432 - ATGGTGACAGGAGTGG-----T-GGAGGTTTCTTGGA--------------TTGGCCTTC--CTCATGCTGCTCAGCCCTTTCCCTGCTCTTCTCTACTCTTCCTCTGTAGAGACAACAGCATCGTGATTGTGGTT
Rabbit scaffold_177992:31055-31167 - CTGGGGAGG----GGAGGAGGC-AGAGGTTTCTTGGAG------CCCAGACTTTTCCTTCTACTCAGGCTGAT-GGCCCTGTGCCCGCTCTTCC-----------CCATAGAGACAACAGCATTGTGATTGTGGTT

uc009nlb.19 (chr8:113362250-113362312 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr8:113362225-113362337 - ----------------------------*--------------*----------------------------***--------*******--*--------#########################
GTGCCCTGTGTAGCTCCTTTTGGGAAAG-GATGGATTCCAGCA-CAGCGAGTTGCTCATGTCTAAGCCGTTC---CTGTGTCT-------GG-TTTCCCAGAATGACCTGGATGACCCTGAACGAG
Rat chr19:40759693-40759809 - GTAGTCTGTAGAGTTCCTTTTTGTAAAA-GATGAATTCCAGAA-TACTGAGTTGCTTATTTCTAAGATGTTGGCTCTGTTTCT-------GGTTTTGCCAGAATGACCTGGATGACCCTGAAAGAG
Guinea pig Unknown ------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_178324:262-382 + GTGTCCTTTATATTCCCTATTGGTAAGGTGCTGCATATCAGAAATAGGAAAGTAATC-CTTCTAAGATGTTGATT----GTCTACAATTTAACTTTCCTAGAATGACCTGGATGACCCTGAAAGAG

uc009nqn.10 (chr8:122478630-122478695 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr8:122478605-122478720 + ----------------------------------*--------------------------------------------------################################
GCAGGTGTGGCTAGGGCTAGGGAGCCCCACAGGG-TGCAGCTGTAGCCAGGCAGGCAGCCTGTGACCCTGGCTACTCTGTCCCAGGTTGAGGTGAGCCGCAGAGTGACTCTGGAGAA
Rat chr19:50241886-50241979 + G--------------------GAAGCCCACAGGGGGGCTGCTGCAGCCAGGCGGG---CCTGTGACCCAGGCTACTTTGTCCCAGGTTGAAGTCAGCCGTAGAGTGACTCTGGAGAA
Guinea pig Unknown ---------------------------------------------------------------------------------------------------------------------
Rabbit Unknown ---------------------------------------------------------------------------------------------------------------------

uc009ntb.13 (chr8:125010844-125010902 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr8:125010819-125010927 - ###*##############*******#------------------------------------------------------------------#########################
GCT-ATCGTCTTCACTGA-------GGTGGGTAGCAGCTTGTAGGGTAGGGGCTGGGCCACATGGCCCATGGCTGAGTGCCCTGTCCTGCAGGTCATGGTGGTCACCAAATACCTGT
Rat Unknown GCT-ATCGTCTTCACTGA-------GGTGGGTAGCAGCTTGTAGGGTAGGGGCTGGGCCACATGATCCATG-CTGAGTGCCCTGTCCTGCAGGTCATGGTGGTCACCAAATACTTGT
Guinea pig Unknown ---------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_188840:1555-1608 + GCTCATCGTCCTCTCTCAACGTGTGGCCGGGCAGAGGTGTGGAAGCGAGGGCCT---------------------------------------------------------------

uc009opz.0 (chr9:26786668-26786738 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr9:26786643-26786763 - ###----------*****--------------------------------------------------------------------**---------------#########################
TTGGTGAGGCCAG-----AAAGGAGTTGGGGAGGGAAGGCAAGGGCTGAGGCTAGCAACTGTCATTCAGGCTCAGCTGAAGTCTTG--ACTCTTGCTCTCCAGCATCCTGCTCTCTGGGAGCCGCTCA
Rat Unknown --------------------------------------------------------------------------------------------------------------------------------
Guinea pig scaffold_252025:86804-86915 + TTGGTGAGGACAGGACCGAAGGGAGT----------------GGGCTGGAGCCAGCAGCGTCTCTTGAGGCTCAGTTGAAATGTTAGCATTCTTCCCCTTTAGCTTCCTGTTCCCTGGGGGCTGCTCA
Rabbit Unknown --------------------------------------------------------------------------------------------------------------------------------

uc009pdf.14 (chr9:44195270-44195332 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr9:44195245-44195357 + -**---------------************---------------*---------------------------------------------------------#########################
G--CTTGAGGAGGTGATG------------GTGTTGATGTGGGGT-AGGAGGTGGAGCGGCTGCCTGATTCCCTCATGAACCTCTCTGCTGCTTTCCTCCTAGAACTTGGCAACACCATATCCAGCCT
Rat chr8:47354000-47354111 + G--CTTGGGGAGGTGATG------------GCACTGTTCT-GGGT-AAGAAGGGGAGGTGCTGCTTGATTCCCTCTGGAACCTCTCTGCTTCTTTCCTCCTAGAACTTGGCAACACCATTTCCAGCCT
Guinea pig Unknown --------------------------------------------------------------------------------------------------------------------------------
Rabbit Unknown GGACTTGGGCAGTTCATGGAAGCAGACAAGGCATTGCCGTTGGCTGAGGAGGTGGAGTCACTGCTTGGTCCCCTTTTGAGTCTTT-GGCTTTCTTCCCCCTAGAACTCGGCAACACCATTTCCAGCCT

uc009pud.8 (chr9:56985216-56985275 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr9:56985191-56985300 + ---**------------------------------*********************------------------------------------*********----------------#########################
GAG--CTGGCACCGCAGACTATCCCCAGGGGACAC---------------------GGGGACTTGGCTGAGGCAGCTCCACTGAGAGCTGAG---------AGCCTTATCCCCGCAGTTCTGGCTGCCAGACACGTTTGGCT
Rat chr8:60893565-60893695 + GAG--CTAGCACACCAGGCTATACCCAGGGGTTACTGGGAGCAGGCCCACATACAGGGGCATGAGGCTAAGACAGCTCCACTGAGAGCTGAG---------GGCCTTATCCCCACAGTTCTGGCTGCCAGATACATTTGGCT
Guinea pig scaffold_208990:13585-13699 - GAGGGCCAGCCCC---------ATCT-GGGCACAGTATGGGTAGGCTCACCC--AGGGCACTGGGGCTGAGGC---------------TGAGTCCCAAAATGGCCCTCTTTCTATAGTTCTGGCTGCCAGACACATTCGGTT
Rabbit Unknown ----------------------------------------------------------------------------------------------------------------------------------------------

uc009rgi.8 (chr9:103122223-103122291 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr9:103122198-103122316 - ---**----------------------------------------------------------------------------------------****---#########################
GGC--TGAGAGGGGCCTTCAAGAGGCCAGTCTAAAAGGGCAGGTGGCACAGGAAATAGCAACTCTTCATTTGCTGTGTCTTCCTGTGTCTTTG----CAGAACGGAGAAGCGGACGCCATGACTT
Rat chr8:108231213-108231331 - GGC--TGAGAGGGACTGTCAAGAAGACAGTCTAAAAGGTCAGGTGGCACAAGAAATAGCAACTCTTCATTTGCTGCGTCTTGCTGTGTCTTTG----TAGAATGGAGAAGCAGATGCCATGAGCT
Guinea pig Unknown -----------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_174606:46976-47091 + GGTCATGGGCAGGTCCTTCAAGGAAGGAGCTGT--------GAGGGCCCAGGACATCC-CTCGTTCTATCAGCCGTGAGTGACTGTGTCTTTGCTTACAGAATGGAGAAGCTGACGCCATGAGCT

uc009rno.10 (chr9:107880877-107880944 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr9:107880852-107880969 + #########################---------------******-------------------------*----------------------------------------#############
ACTGAGTGACCAACACTACCTCTTGGTGAGCTGGGGGATG------CTAGTGGGGAATGTCTTTGGGAAAT-CCACACCACATGCTCTGGCTAAGACTGTTTCTGTCACCAGGTGGGTGCTGGTG
Rat chr8:113247789-113247905 + ACTGAGCTACAAACACTACCTCTTGGTGAGCTGAGGGACG------ATCGTGGGGAA-GTCTTTGGGAAAT-CCATGCTATGTGCTCTGGCTAAGATTCCTCCTGCCAGCAGGTAGGTGCTGGTG
Guinea pig Unknown -----------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_146069:9601-9725 - ACTGAGCCGCCAGCACTACCTCCTGGTGAGCTGAGGGATGAGACCGCCAGTGGGGAGCGTGTCTGGCAGGGGCTGGGGCAGGCCATCTGGCTAAGGCTGCTCCTGCCGGCAGGTAGGTGCTGGCG

uc009rps.16 (chr9:108400178-108400226 +)

3p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr9:108400153-108400251 + --------------------------------------------------------------------------#########################
GCCCTCCGTGGTGCCGTGAAGCAGAGCTGGAGAAAGGTCGCACCACATGCCATATGTGTGTCCTTTCTCCCCAGGTAATTAAGAACCGTTTCCACCGTG
Rat chr16_random:1237770-1237861 + GCCCTCCTTAGTGCCATGAAGCAGGCCTAGAGAAAGGTTT-------TGCCATCTGTATGTTCTTTGTCCTTAGGTAATTAAGAATCGTTTCCACCGTG
Guinea pig scaffold_287133:42701-42745 - A-----------------------------------------------------TCTATGTTCATTGTCC-CAGGTGATTAAGAATCGCTTCCACCGTG
Rabbit Unknown ---------------------------------------------------------------------------------------------------

uc009rrz.21 (chr9:109013046-109013116 +)

mirtron_candidate

Species Coordinate Alignment
Mouse chr9:109013021-109013141 + ####################---------------------------***************-----------*--------------------------------------#########################
ATGCTTTGCCTGAGTTCACGGTCAGTGGGCAGGACCTGGGCTAGGTT---------------GGGCATCGTGC-TATCTGGGACCCTGGCTCACAGGTAGCTTCCCACGCAGGTACAGATGGGCAACCTGCGCTTCT
Rat chr8:114124699-114124818 + ACGCTCTGCCGGAGTTCACGGTCAGCGGGCAGGGCCTGGGCAAGGCT---------------GG-CACCATGA-TATCTGGGGCCCTGGCTCACGGGTAGCTTCCCACACAGGTACAGATGGGGAACCTGCGCTTCT
Guinea pig scaffold_267671:5166-5286 + ATTCCTTGCCTGAGTTCACGGTCAGGGGGCTGGACCTGGGCAGGGCT---------------GGATGTTGAACGTATGCTGAATCCTCACTCACAGGTA-CTCCCCACACAGGTGCAGATGGGAAACCTGCACTTCT
Rabbit scaffold_194055:5589-5725 - ATGCGTTGCCCGAGTTCACAGTCAGTGGGCAGGTCCCgggctgggctgcgctgggctgcgctgggcGTCGGGCGTGTGCTGGATCCCTGTTGACTGGTGCCTCCGTATCCAGGTGCAGATGGGGAACCTGCGCTTCT

uc009rty.10 (chr9:110292693-110292759 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr9:110292668-110292784 - ------*************************************************************************************************************************************--------------------**--------------------------------------------*----------------------#########################
GGAGGG-------------------------------------------------------------------------------------------------------------------------------------GATGGACCAAGCAGGCTCTC--TATGTGGAAGGAACTGGGCCAGCCCAGCATCCACCCGATCCTGT-GTCATCCCTCTTCCTTCCCTAGTCAGTTCATGGACTCCATGCAGCTG
Rat chr8:114766459-114766574 - GGAGGG-------------------------------------------------------------------------------------------------------------------------------------GATCAACCTAGCGAGCTCTT--TATGTGGAATAAGTTGGGTCAGCCCAGCATCCATCTGATGGTGTTGTCATG--TCCTCCTTCCTTAGTCAGTTCATGGACTCCATGCAGCTT
Guinea pig Unknown -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Rabbit scaffold_182555:4775-5009 + GCAGAGTGCAGGGGCTGACCCTCACTACTGAGAGGCAGAGAGACAAGTGAGCTCCTAGCCACAGATTCAGCCTCCAAATGCCCACACTGGCTGGGAGCTCAGTCCAGTGCTCCCACATGGAGGCAGGGACTACTGCAGCCATCACCCCAGCAGGCTTCCTGTAGGTGGAAGG---TGG----TCTCAGCCTCCACCTGGCCCTGTTG-----------CCCTCCACAGCCAGTTCATGGACTCGATGCAGCTG

uc009saj.1 (chr9:119057998-119058056 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr9:119057973-119058081 - ##--------------------------------***--------------------------------------------------#########################
AGGTGAGCCTGGGTGTTATGGTGGGATTGATCGG---AGCAGCTCAGAGCAGATGGCGGCTTCAGCTGCTGCTCTGGCTCCTTCCAGGCCGTCTACTGTGTGGAGAAGTTAG
Rat chr8:124110919-124111030 - AGGTGAGCCTGGGTGTTGTGGTGGGATTGACTGGGCCAGCAGTTCAGAGCAGATGGAGACTTCAGCTCCTGCGCTTGCTCCTCCCAGGCCCTCTACTGTGTGGAGAAGCTGG
Guinea pig Unknown ----------------------------------------------------------------------------------------------------------------
Rabbit Unknown ----------------------------------------------------------------------------------------------------------------

uc009sas.9 (chr9:119258551-119258609 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chr9:119258526-119258634 + ##--------*-----***********************-------------------***---***-------******************************----------------------------------------#########################
AGGTGAGCCT-GGGTG-----------------------TTATGGTGGGATTGATCGG---AGC---AGCTCAG------------------------------AGCAGATGGCGGCTTCAGCTGCTGCTCTGGTTCCTTCCAGGCCGTCTACTGTGTGGAGAAGCTAG
Rat chr8:124313026-124313137 + AGGTGAGCCT-GGGTG-----------------------TTGTGGTAGGATTGACTGGGCCAGC---AGTTCAG------------------------------AGCAGATGGAGACTTTAGCTCCTGCGCTTGCTCCTTCCAGGCCCTCTACTGTGTGGAGAAGCTGG
Guinea pig scaffold_228957:29136-29274 + AGGTGAGCCTTGTGTC-----------------------TTGCTGTTGGCTGGGCCTG---GGCAGCATGGGAGAAGGGAGCAGTCAGGACTGGCGCCAGGAGGGACACA----GGTGCCAGCTGCTACTCTGGCTCCTTGCAGGCTGTCTACTGTGTGGAGAAGCTGG
Rabbit scaffold_97499:9599-9727 + AGGTGAGCTGTGTCCCCCGCACTCATGGGCCCTGGGCTGCGGGGGCAGCAC---GTGGGCAAGG---GGTGCGG------------------------------GGCAGG----GGTCTCTGCTGAAGTCCTGCCTCCTGCCAGGCCGTCTACTGCGTGGAGAAGCTGG

uc009tmf.3 (chrX:70923921-70923974 +)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chrX:70923896-70923999 + ########################################################################################################
CCAGCCACCAAGCTTAGGCAGGAGGCATCTTAAGGGGGATCAGGGATCCAGAGCCTCTCTGAGCACCCTGGCCCCCCAGATCGTGTACTTCACTGCTACATTCC
Rat chrX:159576055-159576158 + CCAGCCACCAAGTTTAGGTAGGAGGCATCTTAAGGGGGAGCAGGGATCCAGAGCCTCTCTGAGCACCCTGGCCCCCTAGATCGTGTACTTCACTGCTACATTCC
Guinea pig scaffold_266549:40371-40431 - -------------------------------------------GGGTGCAGTGCCCCACCAAGTCACCTGGGCCCCTAGATCGTGTACTTCACTGCTACATTCC
Rabbit scaffold_213385:59091-59170 - -----------------------GGCCTCTGGGGGGAGGTGGGGGCT-GCGAGCCCCTCTGAGCAGCCTGGCCCCCTAGATCGTGTACTTCACTGCTACATTCC

uc009ubh.2 (chrX:103174820-103174897 -)

5p_tailed_mirtron_candidate

Species Coordinate Alignment
Mouse chrX:103174795-103174922 - -----------------------------******----------------------------*----------------------------------------------#########################
AAGGTTTATAAATTCATCTTAATTTTCTT------CATGAGAAACTGGGAATAGGAAAACGGT-TGTCTTTTGTGGCTACATGAATTTCTCCTTAAACAGTTTCTCTAAGATGGTGGGGTTACCTTAGGAATGGT
Rat chrX:94102125-94102246 - tTAA-------ATTGATCTTAATTTTCTT------CATGAGAAATTGGGAATACGAAAATGGTATGTGTTTTGTGGCTACATGAATTTCTCCTTAAACAGGTTTTCTAAGATGGTGGGGTTACCTTAGGTATGGT
Guinea pig scaffold_238880:8355-8485 - ttGtTTTt-gtTTTTTTTTggtTTTTttTTgTTTTgtTGtGAAACTGGGAATAGTGAGATGATGTGTCTT--GT-TCTATGTGAATTTTTCCTTAAACCATTTTTCTAAGATGGTGGGGTTACCTTAGGGATGGT
Rabbit scaffold_212260:19113-19240 - ttTtTTTt-TtTtTTTtTTTGATTTTCTT------CATGAGAAATTAGGAATAGTAAAGTTGTATGTCTTTTATATCTATGTGAATTTCTCCTTAAACCGTTTTCCTAAGATGGTGGGGTTACCTTAGGGATGGT

Generated: 10/11/2012 at 02:24 PM