ID:

mmu-mir-704

 Coordinate:

chr6:47803576-47803652 -

 Confidence:

Known

 Type:

Unknown

 [View on miRBase]
[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-29.9 -29.9 -29.9

Sense Strand Reads

ATGGCTGCTACCTTCCTCGTAGTGTGTGGAAAGGGACTGTCCCTTGCACAGCTGGGAGCTAGAGGATGTGGTCAGCTGCAAGGATCTTCCTCAGACATGTGCTCTGCTCCTAGGGATTGTTGACTACATGATTGAGCAGTCTGGGCCTCCCTCAAAGGAGATCCTGACCCTGAAGCA
***********************************((.((((((.........((((((.((((.(((((.....(((..((((...))))))).))))).)))))))))))))))).))........************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR391852
embryo		 SRR391848
embryo		 SRR391853
embryo		 SRR391850
embryo		 SRR391849
embryo		 SRR391851
embryo		 SRR042455
blood		 SRR069809
testes		 SRR042463
spleen		 SRR391845
embryo		 SRR248526
testes		 SRR391847
embryo		 SRR391846
embryo		 SRR014236
testes		 SRR040488
liver		 SRR042471
spleen		 SRR014231
testes		 SRR206941
brain		 SRR248523
testes		 SRR553602
testes		 SRR042487
spleen		 SRR042468
lymph		 SRR042469
lymph		 SRR059769
spleen		 SRR116846
epididymis		 SRR553583
cerebellum		 SRR073954
blood		 SRR042477
brain		 SRR014235
testes		 SRR042467
spleen		 SRR059770
spleen		 SRR065059
pancreas		 SRR248525
testes		 SRR248527
testes		 SRR553586
testes		 SRR345204
brain		 SRR032477
uterus		 SRR038741
brain		 SRR038744
brain		 SRR039183
fibroblast		 SRR039185
fibroblast		 SRR039610
brain		 SRR042461
bone marrow		 SRR042462
bone marrow		 SRR042470
lymph		 SRR042473
lymph		 SRR042475
fibroblast		 SRR051939
testes		 SRR248524
testes		 SRR390297
fibroblast		 SRR553604
testes		 SRR037922
embryo		 SRR060845
brain		 GSM475281
testes		 GSM509279
testes		 SRR028731
testes		 SRR039154
muscle		 SRR039184
fibroblast		 SRR039186
fibroblast		 SRR042456
bone marrow		 SRR042466
spleen		 SRR042481
pancreas		 SRR206939
brain		 SRR206940
brain		 SRR345202
brain		 SRR553585
kidney		 SRR345198
brain		 SRR037920
embryo		 SRR065047
liver		 SRR065049
liver		 SRR553582
brain		 SRR525238
Blood		 GSM510444
brain		 SRR037906
brain		 SRR037923
embryo		 SRR037924
embryo		 SRR037925
embryo		 SRR037929
embryo		 SRR039152
muscle		 SRR042457
bone marrow		 SRR042459
blood		 SRR042464
thymus		 SRR042472
lymph		 SRR042479
liver		 SRR042480
kidney		 SRR042486
ovary		 SRR065046
liver		 SRR065054
jejunum		 SRR069810
testes		 SRR073955
blood		 SRR077866
liver		 SRR206942
brain		 SRR345199
brain		 SRR345205
brain		 SRR345207
brain		 SRR363959
testes		 SRR553603
testes		 SRR042482
skin		 SRR065053
jejunum		 SRR345200
brain		 SRR065045
liver		 SRR095855BC6
heart
............................................................................................AGACATGTGCTCTGCTCCTAGT............................................................... 22 1 1 174.00 174 19 28 13 26 18 5 0 1 1 7 4 9 3 0 0 0 0 1 0 4 0 0 0 0 1 1 0 0 0 2 0 1 1 2 0 3 0 3 2 0 0 3 1 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0
............................................................................................AGACATGTGCTCTGCTCCTAGA............................................................... 22 1 1 27.00 27 6 1 6 0 1 4 1 0 0 0 2 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................AGCTGGGAGCTAGAGGATGTGGT......................................................................................................... 23 0 1 24.00 24 0 0 0 2 1 0 0 1 2 0 1 0 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2 0 1 2 0 0 0 0 0 2 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................AGCTGGGAGCTAGAGGATGTGGTC........................................................................................................ 24 0 1 18.00 18 1 0 3 0 0 0 0 1 1 1 0 0 0 0 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................GGGATTGTTGACTACATGATT............................................ 21 0 1 18.00 18 0 5 1 2 7 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................ATGGGATTGTTGACTACATGATT............................................ 23 2 1 17.00 17 9 1 4 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................AGCTGGGAGCTAGAGGATGTG........................................................................................................... 21 0 1 17.00 17 0 1 0 0 0 0 5 5 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................AGCTGGGAGCTAGAGGATGTGGTCA....................................................................................................... 25 0 1 12.00 12 2 0 0 0 1 1 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................GACATGTGCTCTGCTCCTAGT............................................................... 21 1 1 11.00 11 2 1 1 2 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................AGCTGGGAGCTAGAGGATGT............................................................................................................ 20 0 1 10.00 10 0 0 0 0 0 0 4 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................AGACATGTGCTCTGCTCCTAG................................................................ 21 0 1 8.00 8 0 2 0 0 0 1 0 0 0 1 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................AGACATGTGCTCTGCTCCTATT............................................................... 22 2 1 7.00 7 1 5 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GCTGGGAGCTAGAGGATGTGGT......................................................................................................... 22 0 1 7.00 7 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................GTTGACTACATGATTGAGCAGTCT................................... 24 0 1 7.00 7 3 0 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................AGCTGGGAGCTAGAGGATGTGG.......................................................................................................... 22 0 1 7.00 7 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................AGACATGTGCTCTGCTCCTAGTAA............................................................. 24 2 1 7.00 7 1 3 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................GTTGACTACATGATTGAGCAGT..................................... 22 0 1 6.00 6 1 0 3 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................AGCTGGGAGCTAGAGGATGTGGG......................................................................................................... 23 1 1 5.00 5 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GCTGGGAGCTAGAGGATGTG........................................................................................................... 20 0 1 4.00 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................AGCTGGGAGCTAGAGGATGTGGTAA....................................................................................................... 25 1 1 4.00 4 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................AGCTGGGAGCTAGAGGATG............................................................................................................. 19 0 1 4.00 4 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGGGATTGTTGACTACATGATTGAGCAG...................................... 28 1 1 4.00 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................CTGGGAGCTAGAGGATGTGGTCA....................................................................................................... 23 0 1 4.00 4 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................GTTGACTACATGATTGAGC........................................ 19 0 1 4.00 4 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................AGCTGGGAGCTAGAGGATGTGGTCT....................................................................................................... 25 1 1 3.00 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................AGCTGGGAGCTAGAGGATGTGGTAT....................................................................................................... 25 2 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................AGACATGTGCTCTGCTCCTAGTA.............................................................. 23 2 1 3.00 3 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................AGACATGTGCTCTGCTCCTA................................................................. 20 0 1 3.00 3 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................TGATTGAGCAGTCTGGGCCTCCCTCAA...................... 27 0 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGGGATTGTTGACTACATGATTGAGCAGTC.................................... 30 1 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................AGCTGGGAGCTAGAGGATGTGA.......................................................................................................... 22 1 1 2.00 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................AGCTGGGAGCTAGAGGATGTGT.......................................................................................................... 22 1 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................AGACATGTGCTCTGCTCCT.................................................................. 19 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................AGCTGGGAGCTAGAGGATGTGGGCA....................................................................................................... 25 1 1 2.00 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................CAGACATGTGCTCTGCTCCTAGT............................................................... 23 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................ATGATTGAGCAGTCTGGGCC.............................. 20 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................TGATTGAGCAGTCTGGGCCTCCCTCA....................... 26 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................TGATTGAGCAGTCTGGGCCTCCCTC........................ 25 0 1 2.00 2 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................GTTGACTACATGATTGAGCAG...................................... 21 0 1 2.00 2 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GCTGGGAGCTAGAGGATGTGGTC........................................................................................................ 23 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................AGACATGTGCTCTGCTCCTAGTT.............................................................. 23 2 2 2.00 4 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..................................................GCTGGGAGCTAGAGGATGTGGTCA....................................................................................................... 24 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GCTGGGAGCTAGAGGATGTGGTCT....................................................................................................... 24 1 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................ATGGGATTGTTGACTACATGAT............................................. 22 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................AGCTGGGAGCTAGAGGATGTGGTT........................................................................................................ 24 1 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................TATGGGATTGTTGACTACATGATTGAGC........................................ 28 3 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GCTGGGAGCTAGAGGATGTGGTAT....................................................................................................... 24 2 1 2.00 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................GGGATTGTTGACTACATGATTGAGCAG...................................... 27 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................AGACATGTGCTCTGCTCCTAGTAT............................................................. 24 3 6 1.50 9 1 1 1 1 0 2 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...............................................................................................................AGGGATTGTTGACTACATGATTGAGC........................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................TGGGAGCTAGAGGATGTGGTCAT...................................................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................ACAGCTGGGAGCTAGAGGATGTGGTC........................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................ACAGCTGGGAGCTAGAGGATGTGGTCT....................................................................................................... 27 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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............................................................................................ATACATGTGCTCTGCTCCTAGA............................................................... 22 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TTGGGATTGTTGACTACAT................................................ 19 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................AGGACGTGGTCAGCTGCGA................................................................................................ 19 2 11 0.18 2 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................AGCTGCGAGGATCTGCCTCAGGC................................................................................. 23 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................GACATGAGCTCTGCTCCTAGT............................................................... 21 2 7 0.14 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GCTGGGAGCTAGAGGATGTTGCA........................................................................................................ 23 3 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................GTGTGCGGAAAGGGACT........................................................................................................................................... 17 1 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................AGGACGTGGTCAGCTGC.................................................................................................. 17 1 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................GCAGTATGGGCCTCCCT......................... 17 1 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.................................................AGCTGGGAGCCAGAGGATGTT........................................................................................................... 21 2 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................ATTGATGAGTATATGATTGAGC........................................ 22 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................AGCTGGGAGATAGTGGATGGGGT......................................................................................................... 23 3 17 0.06 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................AGGACGTGGTCAGCTGCGAT............................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................AGCTAGGACCTAGAGGATGT............................................................................................................ 20 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................AGACATGTGCTCTGCTCCAT................................................................. 20 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................ATCCTGACCCTGAAG.. 15 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................GACATGTGCTCTGCTCCTATTT.............................................................. 22 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TACCGACGATGGAAGGAGCATCACACACCTTTCCCTGACAGGGAACGTGTCGACCCTCGATCTCCTACACCAGTCGACGTTCCTAGAAGGAGTCTGTACACGAGACGAGGATCCCTAACAACTGATGTACTAACTCGTCAGACCCGGAGGGAGTTTCCTCTAGGACTGGGACTTCGT
*************************************************((.((((((.........((((((.((((.(((((.....(((..((((...))))))).))))).)))))))))))))))).))........*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR345200
brain		 SRR206941
brain		 SRR039152
muscle		 SRR345196
brain		 SRR345207
brain		 SRR065059
pancreas		 SRR391852
embryo		 SRR391847
embryo
..........................................................................CGATGTTCCTAGAAGGAGT.................................................................................... 19 1 3 0.33 1 1 0 0 0 0 0 0 0
...........................................................................GTCGTTCCTAGAAGGCGTCT.................................................................................. 20 2 6 0.17 1 0 1 0 0 0 0 0 0
...........................................................................................................AGGCTAGCTAACAACTGATG.................................................. 20 3 7 0.14 1 0 0 1 0 0 0 0 0
..............................................................................................................................................CCCGGAGCGAGTTTCC................... 16 1 12 0.08 1 0 0 0 1 0 0 0 0
.....................................................................................................................................TTCGTCAGGCGCGGAGGGAGT....................... 21 3 14 0.07 1 0 0 0 0 1 0 0 0
............................................................................................................................................GACCCGGAGCTAGTTTCCT.................. 19 2 15 0.07 1 0 0 0 0 0 1 0 0
..............................................................TCCTGCACCATTCGACGTT................................................................................................ 19 2 17 0.06 1 0 0 0 0 0 0 1 0
.....................................................CGCTCCATCTGCTACACCAG........................................................................................................ 20 3 20 0.05 1 0 0 0 0 0 0 0 1
....................................................................................................................................TCTCGTCAGACCCGGAG............................ 17 1 20 0.05 1 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
mm10 chr6:47803526-47803702 - mmu-mir-704 ATGGCTGCTACCTTCCTCGTA----GTGTGTGGAAAGGGAC----------------TGTCCCTTGCACAGCTGGGAGCT----AG----AG----GATGTGGTCAGCTGCAAGGAT-CTTCCTCAGACATGTGCTCTGCTCCTAGGGATTGTTGACTACATGATTGAGCAGTCTGGGCCTCCCTCAAAGGAGATCCTGACCCTGAAGCA
cavPor3 Unknown AGG-CAGCAGTCTGCCCTGCC----ACATACAGAATGGTGG----------------TGCCTGCGGGGTAGGTGGCA-------------------------GGTTGGCCCCAGGCC-CCTTCTCAGGCCTGCATTGTGCTCCCAGGCATCGTGGACTACATGATCGAGCAGTCGGGGCCTCCCTCCAAGGAGATTCAGAGCCTGAAGCA
dipOrd1 scaffold_17792:23019-23168 + AGGGCCACCTCCCGCCTC-CC----CCCCTC----------------------------------G---GGTCGGGAGCT----TG----AG------CGGGGCTGGACCCC---AG-CCTCGTCACACATGTGCTCTGCTCCTAGGAATCGTGGACTACATGGTGGAGCAGTCCGGGCCTCCCTCAAAGGAGATTGCCACCCTGAAGCA
hetGal2 Unknown ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ochPri2 scaffold_18218:8600-8784 - ATG-CCGCTTCCTCTTCTCCG----CCCTGTGGGATGGCAC----------------TGTCGCTGAAGGTGCCAGGAGCTGGCTGGTGGGAC----GGGGCGGGCAGTTCCGAGGGCCCCCGGTCAGATGCCTGCTTTGCCCCCAGGGATTGTGGACTACATGATCGAGCAGTCCGGCCCTCCCTCCAAGGAGGTCCCCACCCTGAAGCA
oryCun2 chr7:3015735-3015935 + ACT-CCGCTTCCTTCTCTGCTGCCACCGTGGGGAAGGGCGGCTCCCTGCCAGGCCACTGCCCCTGGAAGGGCTGGGGGCA----GGGGGCAG----GGGGCAGGCAGTTCTGAGGTCCCCTTCTCAGAGGCGTGCTTTGTTCCCAGGGATCGTTGACTACATGATCGAGCAGTCCGGGCCTCCCTCCAAGGAGGTTCCGACCCTGAAGCA
rn5 chr4:142149300-142149476 - ATGGCTGCTGCCTTTCTCACA----GTGTGTGGAAAGGGAA----------------TGTCCTTTGTACAGCTGGGAGCT----GG----AG----GATGTGGTCAGCTTCAAGGAC-CTCCCTCAGACATGTGCTCTGCTCCTAGGAATTGTTGACTACATGGTTGAGCAGTCTGGACCTCCTTCCAAGGAGATTCTGACCCTGAAGCA
speTri2 JH393337:5197897-5198064 - ACGGCCACGTCCTTTCCT-CA----CCCCGTGGTGGGGCGA----------------GCCCCATGAT-----------------AG----AGGGGTAGTGTGGGCCACTCCAAAAGCCCCTCCTCAGGTGTGTGCTTTCTCCCCAGGGATTGTTGACTACATGATTGAGCAGTCCGGGCCTCCCTCCAAGGAGGTTCCAACCCTGAAGCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
mm10
ATGGCTGCTACCTTCCTCGTA----GTGTGTGGAAAGGGAC----------------TGTCCCTTGCACAGCTGGGAGCT----AG----AG----GATGTGGTCAGCTGCAAGGAT-CTTCCTCAGACATGTGCTCTGCTCCTAGGGATTGTTGACTACATGATTGAGCAGTCTGGGCCTCCCTCAAAGGAGATCCTGACCCTGAAGCASizeHit CountTotal NormTotalSRR042455
blood		SRR042459
blood		SRR042460
blood		SRR069834
blood		SRR073954
blood		SRR073955
blood		SRR525238
Blood		SRR525237
Blood		SRR042456
bone marrow		SRR042457
bone marrow		SRR042461
bone marrow		SRR042462
bone marrow		GSM317181
brain		GSM317182
brain		GSM361394
brain		GSM361395
brain		GSM361398
brain		GSM361399
brain		GSM361402
brain		GSM361407
brain		GSM361408
brain		GSM361415
brain		GSM361430
brain		GSM510444
brain		SRR037904
brain		SRR037905
brain		SRR037906
brain		SRR037907
brain		SRR038741
brain		SRR038744
brain		SRR039610
brain		SRR042477
brain		SRR060845
brain		SRR206939
brain		SRR206940
brain		SRR206941
brain		SRR206942
brain		SRR345196
brain		SRR345197
brain		SRR345198
brain		SRR345199
brain		SRR345200
brain		SRR345201
brain		SRR345202
brain		SRR345203
brain		SRR345204
brain		SRR345205
brain		SRR345206
brain		SRR345207
brain		SRR037919
embryo		SRR037920
embryo		SRR037921
embryo		SRR037922
embryo		SRR037923
embryo		SRR037924
embryo		SRR037925
embryo		SRR037926
embryo		SRR037927
embryo		SRR037928
embryo		SRR037929
embryo		SRR037930
embryo		SRR391845
embryo		SRR391846
embryo		SRR391847
embryo		SRR391848
embryo		SRR391849
embryo		SRR391850
embryo		SRR391851
embryo		SRR391852
embryo		SRR391853
embryo		SRR116846
epididymis		GSM566419
fibroblast		GSM566420
fibroblast		SRR039183
fibroblast		SRR039184
fibroblast		SRR039185
fibroblast		SRR039186
fibroblast		SRR042475
fibroblast		SRR390297
fibroblast		SRR390298
fibroblast		SRR042484
salivary gland		SRR042476
heart		SRR095853
heart		SRR095855BC1
heart		SRR095855BC10
heart		SRR095855BC2
heart		SRR095855BC3
heart		SRR095855BC4
heart		SRR095855BC5
heart		SRR095855BC6
heart		SRR095855BC7
heart		SRR095855BC8
heart		SRR095855BC9
heart		SRR065052
jejunum		SRR065053
jejunum		SRR065054
jejunum		SRR065055
jejunum		SRR065056
jejunum		SRR042480
kidney		SRR040488
liver		SRR042479
liver		SRR065045
liver		SRR065046
liver		SRR065047
liver		SRR065048
liver		SRR065049
liver		SRR065050
liver		SRR077864
liver		SRR077865
liver		SRR077866
liver		SRR042478
lung		SRR042468
lymph		SRR042469
lymph		SRR042470
lymph		SRR042472
lymph		SRR042473
lymph		SRR039152
muscle		SRR039153
muscle		SRR039154
muscle		SRR042483
muscle		SRR014234
ovary		SRR037896
ovary		SRR037897
ovary		SRR037898
ovary		SRR037899
ovary		SRR042486
ovary		SRR042481
pancreas		SRR065058
pancreas		SRR065059
pancreas		SRR042482
skin		SRR042463
spleen		SRR042465
spleen		SRR042466
spleen		SRR042467
spleen		SRR042471
spleen		SRR042487
spleen		SRR059768
spleen		SRR059769
spleen		SRR059770
spleen		SRR059771
spleen		SRR059772
spleen		SRR059773
spleen		GSM475281
testes		GSM509275
testes		GSM509279
testes		SRR014231
testes		SRR014235
testes		SRR014236
testes		SRR028731
testes		SRR037900
testes		SRR037901
testes		SRR037902
testes		SRR037903
testes		SRR042485
testes		SRR051939
testes		SRR051940
testes		SRR069809
testes		SRR069810
testes		SRR069811
testes		SRR248523
testes		SRR248524
testes		SRR248525
testes		SRR248526
testes		SRR248527
testes		SRR363956
testes		SRR363957
testes		SRR363958
testes		SRR363959
testes		SRR363960
testes		SRR363963
testes		SRR363964
testes		SRR553582
brain		SRR553583
cerebellum		SRR553584
heart		SRR553585
kidney		SRR553602
testes		SRR553603
testes		SRR553604
testes		SRR553586
testes		SRR042464
thymus		SRR059765
thymus		SRR059766
thymus		SRR059767
thymus		SRR032476
uterus		SRR032477
uterus
.............................................................................................................................AGACATGTGCTCTGCTCCTAGT...............................................................221174.001740000010000110000000000010000323011110000000003100000100100010739281826519131000000000000000000000000000000010000000000000000000000000101002000000001000000000000010000142000000001014100100000
.............................................................................................................................AGACATGTGCTCTGCTCCTAGA...............................................................22127.002710000000000000000000000000100000000100000000000000001000000000001104661000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000001000000000
.....................................................................AGCTGGGAGCT----AG----AG----GATGTGGT..........................................................................................................23124.002400000000000000000000000000000002000010000000000000000000000000200120000001020000000000000000000100001000010000010000000000000000002001000020000000000000000010000010000000000000000000002
.....................................................................AGCTGGGAGCT----AG----AG----GATGTGGTC.........................................................................................................24118.001800000000010000000000000000000000000000000000000000000000000001000000130000102100000000000000000000020000000000000000000000000000101000000200000000000000000010000001000000000000000000000
.................................................................................................................................................GGGATTGTTGACTACATGATT............................................21118.001800000000000000000000000000000000000000000000000000000000000001105720010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.....................................................................AGCTGGGAGCT----AG----AG----GATGTG............................................................................................................21117.001750000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000011111000000000000001000000000000000000000000050000000000000000000000000000
.....................................................................AGCTGGGAGCT----AG----AG----GATGTGGTCA........................................................................................................25112.001200000000000000000000000000000000000000000000000000000000000000000101200000000030000000000000000000000000000000000000000000000000000000000010000010000000000030000000000000000000000000000
..............................................................................................................................GACATGTGCTCTGCTCCTAGT...............................................................21111.001100002000000000000000000000000000000100000000000000000000000001001021210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................AGCTGGGAGCT----AG----AG----GATGT.............................................................................................................20110.001040000000000000000000000000000000000000011001000000000000000000010000000000000000000000000000000000000000000000000001000000000000000000100000000000000000000000000000000000000000000000000
.............................................................................................................................AGACATGTGCTCTGCTCCTAG................................................................2118.00800000000000000000000000000000000001000000000000000000000000001202001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
.............................................................................................................................AGACATGTGCTCTGCTCCTATT...............................................................2217.00700000000000000000000000000000000000000000000000000000000000000005100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................GCTGGGAGCT----AG----AG----GATGTGGT..........................................................................................................2217.00700000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000010000000000000100001000000000001000110000000000000000000000000000000000000000000000000
.......................................................................................................................................................GTTGACTACATGATTGAGCAGTCT...................................2417.00700000000000000000000000000000000000000000000000000000000000000000101320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................AGCTGGGAGCT----AG----AG----GATGTGG...........................................................................................................2217.00700000000000000000000000000000000000200000000000000000100000000000000000000000000000000000000000000000000000001000000000000000000001000000000000000000000000000010010000000000000000000000
.......................................................................................................................................................GTTGACTACATGATTGAGCAGT.....................................2216.00600000000000000000000000000000000000000000000000000000000000000000101130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................AGCTGGGAGCT----AG----AG----GATGTGGG..........................................................................................................2315.00500000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000001000010000000000000000000001000010000000000000000000000
......................................................................GCTGGGAGCT----AG----AG----GATGTG............................................................................................................2014.00400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000300000000000000000000000000000000000000000000000000
.....................................................................AGCTGGGAGCT----AG----AG----GATG..............................................................................................................1914.00420000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000
.......................................................................CTGGGAGCT----AG----AG----GATGTGGTCA........................................................................................................2314.00400000000000100000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000001000000000000001000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................GTTGACTACATGATTGAGC........................................1914.00400000000000000000000000000000000000000000000000000000000000000000000220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................AGCTGGGAGCT----AG----AG----GATGTGGTCT........................................................................................................2513.00300000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................AGCTGGGAGCT----AG----AG----GATGTGGTAT........................................................................................................2513.00300000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000001000000000000000000000010000000000000000000000000000000000000000000000000
.............................................................................................................................AGACATGTGCTCTGCTCCTAGTA..............................................................2313.00300000000000000000000000000000000000000000000000000000000000000001000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................AGACATGTGCTCTGCTCCTA.................................................................2013.00300000000000000000000000000000100000000000000000000000000000000000010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGATTGAGCAGTCTGGGCCTCCCTCAA......................2713.00300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002010000000000000000000000000000000000000
.....................................................................AGCTGGGAGCT----AG----AG----GATGTGA...........................................................................................................2212.00210000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................AGCTGGGAGCT----AG----AG----GATGTGT...........................................................................................................2212.00200000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................AGACATGTGCTCTGCTCCT..................................................................1912.00200000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
............................................................................................................................CAGACATGTGCTCTGCTCCTAGT...............................................................2312.00200000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................ATGATTGAGCAGTCTGGGCC..............................2012.00200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000
.................................................................................................................................................................TGATTGAGCAGTCTGGGCCTCCCTCA.......................2612.00200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000
.................................................................................................................................................................TGATTGAGCAGTCTGGGCCTCCCTC........................2512.00200000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.......................................................................................................................................................GTTGACTACATGATTGAGCAG......................................2112.00200000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................GCTGGGAGCT----AG----AG----GATGTGGTC.........................................................................................................2312.00200000000000000000000000000000000100000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................AGACATGTGCTCTGCTCCTAGTT..............................................................2322.00400000000000000000000000000000000000000000000010000000000000000000110000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000
......................................................................GCTGGGAGCT----AG----AG----GATGTGGTCA........................................................................................................2412.00200000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
......................................................................GCTGGGAGCT----AG----AG----GATGTGGTCT........................................................................................................2412.00200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
.....................................................................AGCTGGGAGCT----AG----AG----GATGTGGTT.........................................................................................................2412.00200001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
......................................................................GCTGGGAGCT----AG----AG----GATGTGGTAT........................................................................................................2412.00200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000
.................................................................................................................................................GGGATTGTTGACTACATGATTGAGCAG......................................2712.00200000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.............................................................................................................................AGACATGTGCTCTGCTCCTAGTAT.............................................................2461.50900000000000000000000000000000000100000000000000000000000000000001012110000000000000000000000000000000100000000000000000000000000000000100000000000000000000000000000000000000000000000000
................................................................................................................................................AGGGATTGTTGACTACATGATTGAGC........................................2611.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
........................................................................TGGGAGCT----AG----AG----GATGTGGTCAT.......................................................................................................2311.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
...................................................................ACAGCTGGGAGCT----AG----AG----GATGTGGTC.........................................................................................................2611.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...................................................................ACAGCTGGGAGCT----AG----AG----GATGTGGTCT........................................................................................................2711.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................CACAGCTGGGAGCT----AG----AG----GATGAT............................................................................................................2411.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001
........................................................................................................................................................................................TCAAAGGAGATCCTGACCCT......2011.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
..........................................................................................................................................................GACTACATGATTGAGCAGTCTGGGCC..............................2611.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.....................................................................AGCTGGGAGCT----AG----AG----GATGTGGTCAT.......................................................................................................2611.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................TGGGAGCT----AG----AG----GATGTGGTC.........................................................................................................2111.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
..............................................................................................................................................................ACATGATTGAGCAGTCTGGGCCTCCCTC........................2811.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.................................................................................................................................................GGGATTGTTGACTACATGATTGAGC........................................2511.00100000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................AGCTGGGAGCT----AG----AG----GATGTT............................................................................................................2111.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................AGCTGGGAGCT----AG----AG----GATGTGGTA.........................................................................................................2411.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................AGACATGTGCTCTGCTCCTAGGA..............................................................2311.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................TTGACTACATGATTGAGCAGTCTGGGC...............................2711.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.....................................................................AGCTGGGAGCT----AG----AG----GATGTGGAA.........................................................................................................2431.00300000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000
.............................................................................................................................AGACATGTGCTCTGCTCC...................................................................1811.00100000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................GGAGCT----AG----AG----GATGTGGTCAGCTGCA..................................................................................................2611.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.................................................................................................................................................................TGATTGAGCAGTCTGGGCCTCCCTCC.......................2611.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
.............................................................................................................GCAAGGAT-CTTCCTCAGAC.................................................................................1911.00100000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................ACATGATTGAGCAGTCTGGGCCTCCCTCA.......................2911.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.....................................................................AGCTGGGAGCT----AG----AG----GATGTGGA..........................................................................................................2321.00200000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................AGCTGGGAGCT----AG----AG----GATGTGGTCG........................................................................................................2511.00100000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................TGAGCAGTCTGGGCCTCCCTC........................2111.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................TTGTTGACTACATGATTGAGCAGT.....................................2411.00100000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................GCTGGGAGCT----AG----AG----GATGT.............................................................................................................1911.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................GGGATTGTTGACTACATGATTGAGCAGTCT...................................3011.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.....................................................................AGCTGGGAGCT----AG----AG----GATGTGGTG.........................................................................................................2411.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................CTGGGAGCT----AG----AG----GATGTGGTA.........................................................................................................2211.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................ACATGATTGAGCAGTCTGGGCCTCCCT.........................2711.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
................................................................TGCACAGCTGGGAGCT----AG----AG----GATGTGG...........................................................................................................2711.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
..............................................................................................................................GACATGTGCTCTGCTCCTAGA...............................................................2111.00100001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................GAAAGGGAC----------------TGTCCCTTGCACAGCT.........................................................................................................................................2511.00100000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................AAAGGAGATCCTGACCCT......1811.00100000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................AGACATGTGCTCTGCTCCTAGC...............................................................2211.00100000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................TGGGAGCT----AG----AG----GATGTGGTCA........................................................................................................2211.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................GGATTGTTGACTACATGATT............................................2011.00100000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................AGCTGGGAGCT----AG----AG----GATGTGGTAG........................................................................................................2511.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
.....................................................................AGCTGGGAGCT----AG----AG----GATGTGGTTT........................................................................................................2511.00100000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................AGACATGTGCTCTGCTCCTAGGT..............................................................2311.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.......................................................................................................................................................GTTGACTACATGATTGAGCAGC.....................................2211.00100000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................CAGCTGGGAGCT----AG----AG----GAT...............................................................................................................1911.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................ATTGTTGACTACATGATTGAGCAGTC....................................2611.00100000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................ACATGATTGAGCAGTCTGGGCC..............................2211.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................CAGCTGGGAGCT----AG----AG----GATGTAT...........................................................................................................2311.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
............................................................................................................................................................CTACATGATTGAGCAGTCTGGGCCT.............................2511.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................TGACTACATGATTGAGCAGTCTGGGC...............................2611.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................TGTGCTCTGCTCCTAGGGA.............................................................1911.00100000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................TGACTACATGATTGAGCAGT.....................................2011.00100000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................AGCT----AG----AG----GATGTGGTCAGCTGCAAGG...............................................................................................2711.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................ATGATTGAGCAGTCTGGGCCTCCC..........................2411.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................GGGATTGTTGACTACATGA..............................................1911.00100000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................TCAAAGGAGATCCTGACCCTGAAGC.2511.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.....................................................................................................................................GCTCTGCTCCTAGGGATT...........................................................1811.00100000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................CAGACATGTGCTCTGCTCCTAGTT..............................................................2411.00100000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................AGACATGTGCTCTGCTCCTAT................................................................2111.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000
...............................................................................................................................................TAGGGATTGTTGACTACATGATTGAG.........................................2611.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...............................................................................................................................................................................GGGCCTCCCTCAAAGGAG.................1811.00100000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................TGACTACATGATTGAGCA.......................................1811.00100000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................GATTGAGCAGTCTGGGCCT.............................1911.00100000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................AGCTGGGAGCT----AG----AG----GATGA.............................................................................................................2020.50100000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................GACATGTGCTCTGCTCCTAGTT..............................................................2220.50100000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................AGACATGTGCTCTGCTCCTAGAT..............................................................2320.50100000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................AGCTGGGAGCT----AG----AG----GATGTGGCA.........................................................................................................2420.50110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................AGACATGTGCTCTGCTCCTAGTAG.............................................................2420.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.............................................................................................................................AGACATGTGCTCTGCTCCTAGCA..............................................................2320.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................AGACATGTGCTCTGCTCCTAGAA..............................................................2340.50200000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................AGCTGGGAGCT----AG----AG----GATGTGAAA.........................................................................................................2440.25100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................TACATGATTGAGCAGTCC...................................1840.25100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
.............................................................................................................................AGACATGTGCTCTGC......................................................................15170.24400000000000000000000000000000000000000000000000000000000000003010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................AGACATGTGCTCTGCTCCAT.................................................................20200.05100000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................ATCCTGACCCTGAAG..15200.05100000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................GACATGTGCTCTGCTCCTATTT..............................................................22200.05100000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
cavPor3
AGG-CAGCAGTCTGCCCTGCC----ACATACAGAATGGTGG----------------TGCCTGCGGGGTAGGTGGCA-------------------------GGTTGGCCCCAGGCC-CCTTCTCAGGCCTGCATTGTGCTCCCAGGCATCGTGGACTACATGATCGAGCAGTCGGGGCCTCCCTCCAAGGAGATTCAGAGCCTGAAGCASizeHit CountTotal NormTotal
No Reads
dipOrd1
AGGGCCACCTCCCGCCTC-CC----CCCCTC----------------------------------G---GGTCGGGAGCT----TG----AG------CGGGGCTGGACCCC---AG-CCTCGTCACACATGTGCTCTGCTCCTAGGAATCGTGGACTACATGGTGGAGCAGTCCGGGCCTCCCTCAAAGGAGATTGCCACCCTGAAGCASizeHit CountTotal NormTotal
No Reads
hetGal2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
ochPri2
ATG-CCGCTTCCTCTTCTCCG----CCCTGTGGGATGGCAC----------------TGTCGCTGAAGGTGCCAGGAGCTGGCTGGTGGGAC----GGGGCGGGCAGTTCCGAGGGCCCCCGGTCAGATGCCTGCTTTGCCCCCAGGGATTGTGGACTACATGATCGAGCAGTCCGGCCCTCCCTCCAAGGAGGTCCCCACCCTGAAGCASizeHit CountTotal NormTotal
No Reads
oryCun2
ACT-CCGCTTCCTTCTCTGCTGCCACCGTGGGGAAGGGCGGCTCCCTGCCAGGCCACTGCCCCTGGAAGGGCTGGGGGCA----GGGGGCAG----GGGGCAGGCAGTTCTGAGGTCCCCTTCTCAGAGGCGTGCTTTGTTCCCAGGGATCGTTGACTACATGATCGAGCAGTCCGGGCCTCCCTCCAAGGAGGTTCCGACCCTGAAGCASizeHit CountTotal NormTotalGSM1528820
Adult_testes		GSM1528821
Adult_testes_Mili_IP
..........................................................................................................................................................GACTACATGATCGAGCAGTCCGGG................................2412.00202
rn5
ATGGCTGCTGCCTTTCTCACA----GTGTGTGGAAAGGGAA----------------TGTCCTTTGTACAGCTGGGAGCT----GG----AG----GATGTGGTCAGCTTCAAGGAC-CTCCCTCAGACATGTGCTCTGCTCCTAGGAATTGTTGACTACATGGTTGAGCAGTCTGGACCTCCTTCCAAGGAGATTCTGACCCTGAAGCASizeHit CountTotal NormTotalGSM1528817
Adult_testes		GSM1528818
Adult_testes_Mili_IP		GSM1528819
10dpp_testes
...........................................................................................................................................................ACTACATGGTTGAGCAGTCTGGACCTC............................2711.001000
speTri2
ACGGCCACGTCCTTTCCT-CA----CCCCGTGGTGGGGCGA----------------GCCCCATGAT-----------------AG----AGGGGTAGTGTGGGCCACTCCAAAAGCCCCTCCTCAGGTGTGTGCTTTCTCCCCAGGGATTGTTGACTACATGATTGAGCAGTCCGGGCCTCCCTCCAAGGAGGTTCCAACCCTGAAGCASizeHit CountTotal NormTotal
No Reads

Generated: 05/01/2015 at 12:08 AM