ID:

mmu-mir-701

 Coordinate:

chr5:111004144-111004252 +

 Confidence:

Known

 Type:

Unknown

 [View on miRBase]
[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-26.8

Sense Strand Reads

TCCCGCGCAGACAGTAAGCAACAGACAAAAGCTCAACTGAGCAAATTTGTGTGGAGCATCTACCTTGAGCAAGTAATTAGCCGCTGAAATAGATGGATTGTATAGATGAGGTTCTATCTATTAAAGAGGCTAGCCACTTATCAAGTGCTAACAGCCCACTGCAGCAGAAGGCCGTGATGTCAGAAGGATAATTATAGCACACTAGAATA
*************************************************************..(((((..((((..((((((.((..((((((((((...............))))))))))..)).))))))..)))).))))).....*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR391853
embryo		 SRR391851
embryo		 SRR391852
embryo		 SRR391846
embryo		 SRR391848
embryo		 SRR391847
embryo		 SRR391845
embryo		 SRR039184
fibroblast		 SRR039185
fibroblast		 SRR391849
embryo		 SRR037921
embryo		 SRR039186
fibroblast		 SRR039183
fibroblast		 GSM475281
testes		 SRR037920
embryo		 SRR095855BC10
heart		 SRR248525
testes		 SRR038744
brain		 SRR553602
testes		 SRR391850
embryo		 SRR248524
testes		 SRR059768
spleen		 SRR059770
spleen		 SRR248526
testes		 SRR037922
embryo		 GSM510444
brain		 SRR095853
heart		 SRR038741
brain		 SRR039610
brain		 SRR248523
testes		 SRR059765
thymus		 SRR069810
testes		 SRR040488
liver		 SRR037901
testes		 SRR037929
embryo		 SRR037928
embryo		 SRR037925
embryo		 SRR037924
embryo		 SRR037905
brain		 SRR037902
testes		 SRR095855BC1
heart		 SRR037930
embryo		 SRR206939
brain		 SRR037906
brain		 SRR553603
testes		 SRR553604
testes		 SRR037897
ovary		 SRR037903
testes		 SRR073954
blood		 SRR206941
brain		 SRR206942
brain		 SRR037919
embryo		 SRR037927
embryo		 SRR059767
thymus		 SRR553584
heart		 SRR032476
uterus		 SRR077866
liver		 SRR095855BC2
heart		 SRR390297
fibroblast		 SRR553582
brain		 SRR069809
testes		 GSM317181
brain		 SRR014234
ovary		 SRR037900
testes		 SRR077864
liver		 SRR095855BC7
heart		 SRR116846
epididymis		 SRR553586
testes		 SRR077865
liver		 SRR037898
ovary		 SRR037923
embryo		 SRR042457
bone marrow		 SRR059769
spleen		 SRR065058
pancreas		 SRR069811
testes		 SRR553585
kidney		 SRR345207
brain		 GSM317182
brain		 SRR073955
blood		 SRR095855BC4
heart		 SRR095855BC5
heart		 SRR095855BC8
heart		 SRR206940
brain		 SRR248527
testes		 SRR345202
brain		 SRR014231
testes		 SRR345199
brain		 SRR037904
brain		 SRR037907
brain		 SRR037926
embryo		 SRR042456
bone marrow		 SRR042465
spleen		 SRR042471
spleen		 SRR042475
fibroblast		 SRR042477
brain		 SRR042486
ovary		 SRR051940
testes		 SRR059766
thymus		 SRR060845
brain		 SRR069834
blood		 SRR345197
brain		 SRR345198
brain		 SRR345201
brain		 SRR345205
brain		 SRR345200
brain		 SRR039154
muscle		 SRR042466
spleen		 SRR095855BC3
heart
............................................................................TTAGCCGCTGAAATAGATGGA................................................................................................................ 21 0 1 3267.00 3267 1064 607 579 73 72 61 58 45 41 46 59 34 33 37 35 36 33 15 21 17 21 12 18 12 15 11 0 11 9 14 12 4 10 9 5 9 11 8 2 7 5 7 7 4 4 3 5 4 1 4 4 2 4 4 5 1 3 0 0 3 1 0 2 1 1 1 0 1 2 2 3 0 0 2 1 0 1 0 2 0 1 1 2 1 0 0 0 1 1 0 0 0 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0
............................................................................TTAGCCGCTGAAATAGATGG................................................................................................................. 20 0 1 249.00 249 35 22 24 24 4 8 13 0 1 1 8 0 1 4 6 12 3 13 3 2 2 0 0 1 0 5 0 3 5 2 0 0 1 0 0 1 0 0 4 0 5 0 1 0 0 3 1 1 1 3 2 2 1 0 1 0 1 3 0 0 0 0 0 1 1 2 3 0 0 0 0 0 0 0 0 2 0 0 0 2 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0
............................................................................TTAGCCGCTGAAATAGATGGAA............................................................................................................... 22 1 1 198.00 198 17 7 7 8 10 8 7 11 15 14 1 5 12 9 4 1 1 0 0 1 0 7 4 0 0 3 0 1 0 0 4 9 2 0 3 3 0 0 2 1 0 0 0 3 0 0 0 1 0 0 0 0 1 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 3 2 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................................ATTAGCCGCTGAAATAGATGGA................................................................................................................ 22 0 1 161.00 161 53 32 33 4 2 3 2 1 2 1 2 1 1 0 1 1 0 0 2 1 2 0 0 1 2 1 0 0 2 2 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TTAGCCGCTGAAATAGATGGAT............................................................................................................... 22 0 1 116.00 116 10 9 4 6 12 11 6 3 1 13 3 0 6 3 5 0 4 2 1 5 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATCTATTAAAGAGGCTAGCC.......................................................................... 21 0 1 94.00 94 15 5 15 2 4 1 1 15 4 4 0 4 2 1 1 0 5 0 1 1 2 1 1 1 0 0 0 0 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATCTATTAAAGAGGCTAGC........................................................................... 20 0 1 70.00 70 9 9 6 1 0 1 0 11 7 2 3 5 1 2 1 0 1 1 1 0 0 1 1 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATCTATTAAAGAGGCTAGCCA......................................................................... 22 0 1 43.00 43 3 1 5 2 1 2 0 6 9 3 0 6 2 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATCTATTAAAGAGGCTAGCCAT........................................................................ 23 1 1 26.00 26 1 2 0 2 1 4 1 0 3 0 0 1 3 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 3 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TTAGCCGCTGAAATAGATG.................................................................................................................. 19 0 1 22.00 22 1 0 4 4 0 1 0 2 1 0 1 0 0 0 1 2 0 0 1 0 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TTAGCCGCTGAAATAGATGGAAA.............................................................................................................. 23 2 1 20.00 20 1 0 0 0 0 0 0 3 2 0 0 2 1 4 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................CTTAGCCGCTGAAATAGATGGA................................................................................................................ 22 1 1 15.00 15 1 0 2 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATCTATTAAAGAGGCTAG............................................................................ 19 0 1 14.00 14 2 1 2 1 0 0 0 4 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................ATTAGCCGCTGAAATAGATGG................................................................................................................. 21 0 1 11.00 11 2 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATCTATTAAAGAGGCTAGCCT......................................................................... 22 1 1 10.00 10 0 0 0 1 0 2 1 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................GTAGCCGCTGAAATAGATGGA................................................................................................................ 21 1 1 9.00 9 5 0 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................CTTAGCCGCTGAAATAGATGG................................................................................................................. 21 1 1 8.00 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATCTATTAAAGAGGCTAGCCAA........................................................................ 23 1 1 8.00 8 0 0 2 1 0 1 0 2 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................ATAGCCGCTGAAATAGATGGA................................................................................................................ 21 1 1 8.00 8 7 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TTAGCCGCTGAAATAGA.................................................................................................................... 17 0 1 8.00 8 3 1 0 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATCTATTAAAGAGGCTAGCCAAA....................................................................... 24 2 1 7.00 7 1 0 1 1 0 0 1 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TTAGCCGCTGAAATAGAT................................................................................................................... 18 0 1 6.00 6 0 0 0 0 0 0 3 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATCTATTAAAGAGGCTAGCCGA........................................................................ 23 2 1 6.00 6 1 1 1 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATCTATTAAAGAGGCTAGCT.......................................................................... 21 1 1 5.00 5 0 1 1 0 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TTAGCCGCTGAAATAGATTGA................................................................................................................ 21 1 1 5.00 5 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATCTATTAAAGAGGCTAACC.......................................................................... 21 1 1 5.00 5 0 0 0 0 0 1 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TAGCCGCTGAAATAGATGGA................................................................................................................ 20 0 1 5.00 5 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................ATTAGCCGCTGAAATAGATGGAA............................................................................................................... 23 1 1 4.00 4 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATCTATTAAAGAGGCTAGCA.......................................................................... 21 1 1 4.00 4 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................ATTAGCCGCTGAAATAGATGGAAA.............................................................................................................. 24 2 1 4.00 4 0 0 0 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TTAGCCTCTGAAATAGATGGA................................................................................................................ 21 1 2 4.00 8 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TTAGCCGCTGAAATAGATGGAAT.............................................................................................................. 23 1 1 4.00 4 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TTAGCCGCTGCAATAGATGGA................................................................................................................ 21 1 1 4.00 4 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................GATCTTAGCCGCTGAAATAGATGGA................................................................................................................ 25 3 1 4.00 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATCTATTAAAGAGGCTAGCAA......................................................................... 22 1 1 4.00 4 2 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TTAGCCGCTGAAATAGATGGC................................................................................................................ 21 1 1 4.00 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................CTAGCCGCTGAAATAGATGGA................................................................................................................ 21 1 1 4.00 4 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TTAGCCGATGAAATAGATGGA................................................................................................................ 21 1 1 4.00 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATCTATTAAAGAGGCTAGCCATT....................................................................... 24 1 1 4.00 4 0 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TTAGCCACTGAAATAGATGGA................................................................................................................ 21 1 1 3.00 3 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATCTATTAAAGAGGCTAGCCAGA....................................................................... 24 2 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATCTATTAAAGAGGCTAGACC......................................................................... 22 2 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TTAGCCGCTGAAATAGATGGATA.............................................................................................................. 23 1 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TTAGCCGCTGAAATAGATGGT................................................................................................................ 21 1 1 3.00 3 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TTAGCCGCTGAAATAGATAGG................................................................................................................ 21 2 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TTAGCCGCTGAAATAGACGGA................................................................................................................ 21 1 1 3.00 3 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................CTATCTATTAAAGAGGCTAGCC.......................................................................... 22 0 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TTAGCCGCTGAAATAGGTGGA................................................................................................................ 21 1 1 3.00 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TTAGCCGCTGAAGTAGATGGA................................................................................................................ 21 1 1 3.00 3 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TTAGCCGCTGAAATAGATGGAAC.............................................................................................................. 23 2 1 3.00 3 0 0 0 0 0 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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...............................................................................................GATAGTATAGATGATGTTCT.............................................................................................. 20 2 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TGGGTTGTATAGTTGAGGT................................................................................................. 19 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
............................................................................TTAGCCGCAGAAATCGAAGGA................................................................................................................ 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................GATTGTATAG........................................................................................................ 10 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..................................................................................................GGTATAGAGGAGGTTCGATC........................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................GAAGGCCGTCATATCAGA......................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TGCTGCAGTAGGCCGTGCTGT............................. 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................ATTAGCCGCAGAAATA...................................................................................................................... 16 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TTAGCCGCTGAAATAGAGA.................................................................................................................. 19 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATCTATTAAAGAGGCTAGCTAAA....................................................................... 24 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

AGGGCGCGTCTGTCATTCGTTGTCTGTTTTCGAGTTGACTCGTTTAAACACACCTCGTAGATGGAACTCGTTCATTAATCGGCGACTTTATCTACCTAACATATCTACTCCAAGATAGATAATTTCTCCGATCGGTGAATAGTTCACGATTGTCGGGTGACGTCGTCTTCCGGCACTACAGTCTTCCTATTAATATCGTGTGATCTTAT
***********************************************************..(((((..((((..((((((.((..((((((((((...............))))))))))..)).))))))..)))).))))).....************************************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM361408
brain		 GSM361407
brain		 GSM361415
brain		 GSM361395
brain		 GSM361402
brain		 GSM361394
brain		 GSM361399
brain		 GSM361398
brain		 GSM361430
brain		 SRR073954
blood		 SRR039183
fibroblast		 SRR345199
brain		 SRR345197
brain		 SRR391845
embryo		 SRR391850
embryo
............................................................................AATCGGCGACTTTATCTACCT................................................................................................................ 21 0 1 60.00 60 14 12 12 3 3 5 5 4 2 0 0 0 0 0 0
............................................................................AATCGGCGACTTTATCTACCTT............................................................................................................... 22 1 1 6.00 6 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0
............................................................................ACTCGGCGACTTTATCTACCT................................................................................................................ 21 1 1 3.00 3 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0
............................................................................AATCGTCGACTTTATCTACCT................................................................................................................ 21 1 1 2.00 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ATAGTTAATTTCTCCGATCGGT......................................................................... 22 1 1 2.00 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................ACTCGGCGACTTTATCTACC................................................................................................................. 20 1 1 2.00 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................TAATCGGCGACTTTATCTACCT................................................................................................................ 22 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................AATCGGCGACTTTCTCTACCT................................................................................................................ 21 1 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................AATCGGCTACTTTATCTACCT................................................................................................................ 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................GATCGGCGACTTTATCTACCT................................................................................................................ 21 1 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................AATCGGCGACTTTATCTAC.................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................AATCGGCAACTTTATCTACCT................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................AATCTGCGACTTTATCTACC................................................................................................................. 20 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................CCTCGGCGACTTTATCTACCT................................................................................................................ 21 2 3 0.67 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
........TCTGTCATGCGTTGGCTGT...................................................................................................................................................................................... 19 2 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
............................................................ATGGAACGCGTGCATTAA................................................................................................................................... 18 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
............................................................................AATCGTCTACTTTATCTACCT................................................................................................................ 21 2 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................TCGAGTTGACTCGTTAAA.................................................................................................................................................................. 18 1 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
....................................................................CGTTCATCAATCGGC.............................................................................................................................. 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.......................................................................................TTAGCTGCCTAACATAT......................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
........................TGTTTTCGAGTTGGCT......................................................................................................................................................................... 16 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................GTGCATCAATCGGCGAC........................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
mm10 chr5:111004094-111004302 + mmu-mir-701 TCCC----------GCGCAGACAGTAAGCAACAGACAAAAGCTCAACTGAGCAAATTTGTGTGGAGCATCTACCTTGAGCAAGTAATTAGCCGCTGAAATAGAT----GGATTGTATAGATGAGGTTCTATCTATTAAAGAGGCTAGCCACTTATCAAGTGCTAA-------------CAGCCCACTGCAGCAGAA----GGCCGTGATGTCAGAAGGATAATTAT--AGCACACTAGAATA
cavPor3 Unknown CTCTTAATGACTATGTTGAGACAGTCATAAAAAGGCTAAAGTTCAATTAAATAAAC----ACAAAGCGTCTACTTTGAGCAAGG----AGGTGCTAAAATAAAG----AGATTATGTGGG-GAGGTTCCTTCTGTTAAAGAATTTAACTGA---------ACTGGTGGCCAATGCAAACC---T-----------------AC-ATAATATAAGAAGCGTG-CTATAAAATGCTATA-AATA
dipOrd1 Unknown TTGTTAGCATT-GATCTTAGACAGTAAGAAAAAGACTAAAGTTCAATTAAGCAAGTATGTATGAAGCTTTCACTTC----ATGGCATTAGGTGCTGGAGTAAATGTAGAGATTTTATAGAGGAGGGTCCATCTATGCAAGAGGTTAACAACTTATCAGGTACC------CACCATAAATAACCTGGTGTGACACAAGCAAGGC-TGAGTAGGAGAAGCATAATT--ACAGTGCTGGAGAACA
hetGal2 Unknown --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ochPri2 Unknown --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
oryCun2 Unknown TCGTTAATAAC-GCCCTCAGGCAGCAAG-AAAAGACTGAAGTTCAGTTCAACAGATGTGTGTGAAGCATCTTCTTTGGGCAAGAAATTAGGTGCTGGAATGA-TATGAAGGTTAAATGGATGATGTTCCATCTACT--GGAGGTTAGCTCCTTATTAGATGAC------CAATGCGTGCCATCTACTATTATCCAG----GAC-AGAAGATAAGAAGCATG-TTataaagtgctatggaata
rn5 chr12:53413765-53413968 - TTC------------CCCAGACAGTGAGCAAAAGACAAAAGCTCAGTTGGGCAGATTTGTGTGGAGCATCTGCTTTGAGCAAGTAATTAGGTGCTGAAGTAGAT----GGATTGTGTAGATGAGGTTCTATCTATTAAAGAGGTTAGCCACTTATCAAGTGCTAA-------------CAGCCCATTGCAGCAGAA----GGCCGGGATGTCAGA-GGATAATT----AGCACAACAGAACA
speTri2 Unknown TTCTTAATGAT-GCCCCTAGACAGTGAGGAAGAAGACGAAGTTCAATTAAACAAATATGTGTGAAGCTCCTACTTAGAATAAAGAATTTGGTGTTAAAATAGAT---------ATACAAGTGA-GTTTGTTCCATTAAAGAGGTTAACTACTTATCAGTTAAT------GA----ATGCAACCTAGTGTAATACAA----GAC---AATATAAAAAGCATA-TTATTAAgtgctataggaca

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
mm10
TCCC----------GCGCAGACAGTAAGCAACAGACAAAAGCTCAACTGAGCAAATTTGTGTGGAGCATCTACCTTGAGCAAGTAATTAGCCGCTGAAATAGAT----GGATTGTATAGATGAGGTTCTATCTATTAAAGAGGCTAGCCACTTATCAAGTGCTAA-------------CAGCCCACTGCAGCAGAA----GGCCGTGATGTCAGAAGGATAATTAT--AGCACACTAGAATASizeHit CountTotal NormTotalSRR042455
blood		SRR042459
blood		SRR042460
blood		SRR069834
blood		SRR073954
blood		SRR073955
blood		SRR525238
Blood		SRR525237
Blood		SRR042456
bone marrow		SRR042457
bone marrow		SRR042461
bone marrow		SRR042462
bone marrow		GSM317181
brain		GSM317182
brain		GSM361394
brain		GSM361395
brain		GSM361398
brain		GSM361399
brain		GSM361402
brain		GSM361407
brain		GSM361408
brain		GSM361415
brain		GSM361430
brain		GSM510444
brain		SRR037904
brain		SRR037905
brain		SRR037906
brain		SRR037907
brain		SRR038741
brain		SRR038744
brain		SRR039610
brain		SRR042477
brain		SRR060845
brain		SRR206939
brain		SRR206940
brain		SRR206941
brain		SRR206942
brain		SRR345196
brain		SRR345197
brain		SRR345198
brain		SRR345199
brain		SRR345200
brain		SRR345201
brain		SRR345202
brain		SRR345203
brain		SRR345204
brain		SRR345205
brain		SRR345206
brain		SRR345207
brain		SRR037919
embryo		SRR037920
embryo		SRR037921
embryo		SRR037922
embryo		SRR037923
embryo		SRR037924
embryo		SRR037925
embryo		SRR037926
embryo		SRR037927
embryo		SRR037928
embryo		SRR037929
embryo		SRR037930
embryo		SRR391845
embryo		SRR391846
embryo		SRR391847
embryo		SRR391848
embryo		SRR391849
embryo		SRR391850
embryo		SRR391851
embryo		SRR391852
embryo		SRR391853
embryo		SRR116846
epididymis		GSM566419
fibroblast		GSM566420
fibroblast		SRR039183
fibroblast		SRR039184
fibroblast		SRR039185
fibroblast		SRR039186
fibroblast		SRR042475
fibroblast		SRR390297
fibroblast		SRR390298
fibroblast		SRR042484
salivary gland		SRR042476
heart		SRR095853
heart		SRR095855BC1
heart		SRR095855BC10
heart		SRR095855BC2
heart		SRR095855BC3
heart		SRR095855BC4
heart		SRR095855BC5
heart		SRR095855BC6
heart		SRR095855BC7
heart		SRR095855BC8
heart		SRR095855BC9
heart		SRR065052
jejunum		SRR065053
jejunum		SRR065054
jejunum		SRR065055
jejunum		SRR065056
jejunum		SRR042480
kidney		SRR040488
liver		SRR042479
liver		SRR065045
liver		SRR065046
liver		SRR065047
liver		SRR065048
liver		SRR065049
liver		SRR065050
liver		SRR077864
liver		SRR077865
liver		SRR077866
liver		SRR042478
lung		SRR042468
lymph		SRR042469
lymph		SRR042470
lymph		SRR042472
lymph		SRR042473
lymph		SRR039152
muscle		SRR039153
muscle		SRR039154
muscle		SRR042483
muscle		SRR014234
ovary		SRR037896
ovary		SRR037897
ovary		SRR037898
ovary		SRR037899
ovary		SRR042486
ovary		SRR042481
pancreas		SRR065058
pancreas		SRR065059
pancreas		SRR042482
skin		SRR042463
spleen		SRR042465
spleen		SRR042466
spleen		SRR042467
spleen		SRR042471
spleen		SRR042487
spleen		SRR059768
spleen		SRR059769
spleen		SRR059770
spleen		SRR059771
spleen		SRR059772
spleen		SRR059773
spleen		GSM475281
testes		GSM509275
testes		GSM509279
testes		SRR014231
testes		SRR014235
testes		SRR014236
testes		SRR028731
testes		SRR037900
testes		SRR037901
testes		SRR037902
testes		SRR037903
testes		SRR042485
testes		SRR051939
testes		SRR051940
testes		SRR069809
testes		SRR069810
testes		SRR069811
testes		SRR248523
testes		SRR248524
testes		SRR248525
testes		SRR248526
testes		SRR248527
testes		SRR363956
testes		SRR363957
testes		SRR363958
testes		SRR363959
testes		SRR363960
testes		SRR363963
testes		SRR363964
testes		SRR553582
brain		SRR553583
cerebellum		SRR553584
heart		SRR553585
kidney		SRR553602
testes		SRR553603
testes		SRR553604
testes		SRR553586
testes		SRR042464
thymus		SRR059765
thymus		SRR059766
thymus		SRR059767
thymus		SRR032476
uterus		SRR032477
uterus
......................................................................................TTAGCCGCTGAAATAGAT----GGA...................................................................................................................................2113267.0032670000120000000000000000011124111159017244000000000001235591538110495758736172461760757910640003345413400000053600010110000000100000000123000000000020520002000000101201800037000000197400114114213312100000003050214310121410
......................................................................................TTAGCCGCTGAAATAGAT----GG....................................................................................................................................201249.00249000110001000000000000005040031350010320100010000002680000011001324841222243530010100000005123021020000000010000000101000000000000100000000000000000004000000100100000022310000000000123030000000
......................................................................................TTAGCCGCTGAAATAGAT----GGAA..................................................................................................................................221198.0019800000000030000000000000302301001000000000001001010410000013307881014177170001211155100000010000000000000020000000001000000000000010100000100007240009000000001100019000100000000000000000040010
.....................................................................................ATTAGCCGCTGAAATAGAT----GGA...................................................................................................................................221161.0016100000000000000000000000100000020010000000000000001122010000102432113233530001121000000010000010000000000000000100000000000000000000000000000000000001000000000000022010000000000012010000000
......................................................................................TTAGCCGCTGAAATAGAT----GGAT..................................................................................................................................221116.00116000000000000000000000000001002000000000000010000005300110000066111213594100006310000000000000000000000000000000000000000000000000000000000000000003000000110000011100410000000000001000000110
................................................................................................................................TATCTATTAAAGAGGCTAGCC.............................................................................................21194.009400002000000000000000000000000020000010000000000000100000000001214415151500021544000000000000000000000010000000000000000000000000000000000001010001000000000000000012510000000010001000000000
................................................................................................................................TATCTATTAAAGAGGCTAGC..............................................................................................20170.0070000000000000000000000000000001000000000000000000011310000000001102096900011175000000000000000000000000000000000000000000010000000000000001110002000000000000000000111000000000001000010000
................................................................................................................................TATCTATTAAAGAGGCTAGCCA............................................................................................22143.004300000000000000000000000000000000000000000000000000000000000000221311530002696000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000001000000000
................................................................................................................................TATCTATTAAAGAGGCTAGCCAT...........................................................................................23126.002600000000000000000000000000000000000000000000000000000000000001241012010003031030000000000000000000000000000000000000000000000000000000001000000000000100000000000100000000000000000000010
......................................................................................TTAGCCGCTGAAATAGAT----G.....................................................................................................................................19122.002200000000000000000000000000002000000000000000000000110000000010410000410000210000000020000000000000000000000000000000000000000000000000000000000000000000000000000010000000000001000000000
......................................................................................TTAGCCGCTGAAATAGAT----GGAAA.................................................................................................................................23120.002000000000000000000000000002000000000000000000000000000000000000000000010001322000000000000000000000000000000000000000000000000000000000002010004000000001000001000000000000000000000000000
................................................................................................................................TATCTATTAAAGAGGCTAG...............................................................................................19114.001400000000000000000000000000000000000000000000000000000000000000100001220000420000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
.....................................................................................ATTAGCCGCTGAAATAGAT----GG....................................................................................................................................21111.001100000000000000000000000000000100000000000000000000000000000000000003320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000
................................................................................................................................TATCTATTAAAGAGGCTAGCCT............................................................................................22110.001000000000000000000000000000000000000000000000000000000000000001120000000001101000000000000000000000000000000000000000000000000000000000000000001000000000000000100000000000000000000000100
................................................................................................................................TATCTATTAAAGAGGCTAGCCAA...........................................................................................2318.00800000000000000000000000000000000000000000000000000010000000000110000200001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TTAGCCGCTGAAATAGA...........................................................................................................................................1718.00800000000000000000000000000000000000000000000000000000000000002200001030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TATCTATTAAAGAGGCTAGCCAAA..........................................................................................2417.00700000000000000000000000000000000000000000000000000000000000001100000110001011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TTAGCCGCTGAAATAGAT----......................................................................................................................................1816.00600000000000000000000000000000010000000000000000000000000000003000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
................................................................................................................................TATCTATTAAAGAGGCTAGCCGA...........................................................................................2316.00600000000000000000000000000000000000000000000000000000000000000000011110000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TATCTATTAAAGAGGCTAGCT.............................................................................................2115.00500000000000000000000000000000000000000000000000000000000000000000001100000102000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................TAGCCGCTGAAATAGAT----GGA...................................................................................................................................2015.00500000000000000000000000000000010000000000000000000011000000001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................ATTAGCCGCTGAAATAGAT----GGAA..................................................................................................................................2314.00400000000000000000000000100000000000000000000000000010000000000100000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TATCTATTAAAGAGGCTAGCA.............................................................................................2114.00400000000000000000000000001000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.....................................................................................ATTAGCCGCTGAAATAGAT----GGAAA.................................................................................................................................2414.00400000000000000000000000000000000000000000000000000000000000000000100000000002000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
......................................................................................TTAGCCGCTGAAATAGAT----GGC...................................................................................................................................2114.00400000000000000000000000000000000000000000000000000001000000010000000010000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TATCTATTAAAGAGGCTAGCCAGA..........................................................................................2413.00300000000000000000000000000000000000000000000000000000000000000000001020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TTAGCCGCTGAAATAGAT----GGATA.................................................................................................................................2313.00300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011001000000000000000000000000
......................................................................................TTAGCCGCTGAAATAGAT----GGT...................................................................................................................................2113.00300000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000
...............................................................................................................................CTATCTATTAAAGAGGCTAGCC.............................................................................................2213.00300000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TTAGCCGCTGAAATAGAT----GGAAC.................................................................................................................................2313.00300000000000000000000000000000000000000000000000000000000000000000000000002010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TTAGCCGCTGAAATAGAT----GGATT.................................................................................................................................2313.00300000000000000000000000000000000000000000000000000011000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TTAGCCGCTGAAATAGAT----GGAG..................................................................................................................................2213.00300000000000000000000000000000000000000000000000000000000000000011001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TATCTATTAAAGAGGCTAGCCATAA.........................................................................................2512.00200000000000000000000000000000000000000000000000000000000000000100000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TTAGCCGCTGAAATAGAT----GGAC..................................................................................................................................2212.00200000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
................................................................................................................................TATCTATTAAAGAGGCTAGCCTT...........................................................................................2312.00200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TATCTATTAAAGAGGCTAGCCAG...........................................................................................2312.00200000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................GGATTGTATAGATGAGGTT...................................................................................................................1912.00200000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TATCTATTAAAGAGGCTAGCCGAA..........................................................................................2412.00200000000000000000000000000000000000000000000000000010000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TTAGCCGCTGAAATAGAT----GGATTGTATAGA..........................................................................................................................3012.00200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
................................................................................................................................TATCTATTAAAGAGGCTAGCCTA...........................................................................................2312.00200000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
.....................................................................................ATTAGCCGCTGAAATAGAT----G.....................................................................................................................................2012.00200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000010000000000000000000000000
................................................................................................................................TATCTATTAAAGAGGCTAGCCACA..........................................................................................2412.00200000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TATCTATTAAAGAGGCTAGCCAAG..........................................................................................2412.00200000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TATCTATTAAAGAGGCTAGCCAAGA.........................................................................................2512.00200000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TTAGCCGCTGAAATAGAT----GGG...................................................................................................................................2111.00100000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TTAGCCGCTGAAATAGAT----GGAACT................................................................................................................................2421.00200000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................ATCTATTAAAGAGGCTAGCCA............................................................................................2111.00100000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................ATTAGCCGCTGAAATAGAT----GGT...................................................................................................................................2211.00100000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................AGCCGCTGAAATAGAT----GGA...................................................................................................................................1911.00100000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TATCTATTAAAGAGGCTAGCCCAA..........................................................................................2411.00100000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TATCTATTAAAGAGGCTAGCCAAGG.........................................................................................2511.00100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................GCCGCTGAAATAGAT----GGA...................................................................................................................................1811.00100000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................GTGTGGAGCATCTACCTTGAGC..................................................................................................................................................................2211.00100000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TATCTATTAAAGAGGCTAGCCAAC..........................................................................................2411.00100000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................GGATTGTATAGATGAGGTTCT.................................................................................................................2111.00100000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TATCTATTAAAGAGGCTAGCCGAC..........................................................................................2411.00100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................CCGCTGAAATAGAT----GGA...................................................................................................................................1711.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.......................................................................................TAGCCGCTGAAATAGAT----GG....................................................................................................................................1911.00100000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TTAGCCGCTGAAATAGAT----GGAGA.................................................................................................................................2311.00100000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................AATTAGCCGCTGAAATAGAT----GGA...................................................................................................................................2311.00100000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TATCTATTAAAGAGGCTAGCCCT...........................................................................................2311.00100000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TTAGCCGCTGAAATAGAT----GGATTT................................................................................................................................2411.00100000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................AGCCGCTGAAATAGAT----GGAT..................................................................................................................................2011.00100000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TTAGCCGCTGAAATAGAT----GGATTGTA..............................................................................................................................2611.00100000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TTAGCCGCTGAAATAGAT----GGCA..................................................................................................................................2211.00100000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TTAGCCGCTGAAATAGAT----GT....................................................................................................................................2011.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
................................................................................................................................TATCTATTAAAGAGGCTAGA..............................................................................................2021.00200000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TTAGCCGCTGAAATAGAT----GGAACA................................................................................................................................2411.00100000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................CCGCTGAAATAGAT----GG....................................................................................................................................1611.00100000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TATCTATTAAAGAGGCTAGCCATAC.........................................................................................2511.00100000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................CGCTGAAATAGAT----GGA...................................................................................................................................1611.00100000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................AGCCGCTGAAATAGAT----GGAA..................................................................................................................................2011.00100000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................ATTAGCCGCTGAAATAGAT----GGAG..................................................................................................................................2311.00100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................AGCCGCTGAAATAGAT----GG....................................................................................................................................1811.00100000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TATCTATTAAAGAGGCTAGCCAAAA.........................................................................................2530.67200000000000000000000000000000000000000000000000000000000000000010000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TTAGCCGCTGAAATAGAT----GGAAAA................................................................................................................................2420.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
................................................................................................................................TATCTATTAAAGAGGCTAGCCTG...........................................................................................2320.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................TTAGCCGCTGAAATAGAT----GGAAAC................................................................................................................................2420.50100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TATCTATTAAAGAGGCTAGCCAGGA.........................................................................................2520.50100000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TATCTATTAAAGAGGCTAA...............................................................................................1920.50100000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TATCTATTAAAGAGGCTAGCCTGA..........................................................................................2420.50100000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................AAGCAACAGACAAAAGCG.......................................................................................................................................................................................................1860.17100000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TTAGCCGCTGAAATAGAT----GGGAA.................................................................................................................................2360.17100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................TATCTATTAAAGAGGCTAGCATT...........................................................................................2380.13100000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................ATTAGCCGCTGAAATACG...........................................................................................................................................18120.08100000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................GATTGTATAG...........................................................................................................................10200.05100000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TTAGCCGCTGAAATAGAG----A.....................................................................................................................................19200.05100000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
cavPor3
CTCTTAATGACTATGTTGAGACAGTCATAAAAAGGCTAAAGTTCAATTAAATAAAC----ACAAAGCGTCTACTTTGAGCAAGG----AGGTGCTAAAATAAAG----AGATTATGTGGG-GAGGTTCCTTCTGTTAAAGAATTTAACTGA---------ACTGGTGGCCAATGCAAACC---T-----------------AC-ATAATATAAGAAGCGTG-CTATAAAATGCTATA-AATASizeHit CountTotal NormTotal
No Reads
dipOrd1
TTGTTAGCATT-GATCTTAGACAGTAAGAAAAAGACTAAAGTTCAATTAAGCAAGTATGTATGAAGCTTTCACTTC----ATGGCATTAGGTGCTGGAGTAAATGTAGAGATTTTATAGAGGAGGGTCCATCTATGCAAGAGGTTAACAACTTATCAGGTACC------CACCATAAATAACCTGGTGTGACACAAGCAAGGC-TGAGTAGGAGAAGCATAATT--ACAGTGCTGGAGAACASizeHit CountTotal NormTotal
No Reads
hetGal2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
ochPri2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
oryCun2
TCGTTAATAAC-GCCCTCAGGCAGCAAG-AAAAGACTGAAGTTCAGTTCAACAGATGTGTGTGAAGCATCTTCTTTGGGCAAGAAATTAGGTGCTGGAATGA-TATGAAGGTTAAATGGATGATGTTCCATCTACT--GGAGGTTAGCTCCTTATTAGATGAC------CAATGCGTGCCATCTACTATTATCCAG----GAC-AGAAGATAAGAAGCATG-TTataaagtgctatggaataSizeHit CountTotal NormTotalGSM1528820
Adult_testes		GSM1528821
Adult_testes_Mili_IP
No Reads
rn5
TTC------------CCCAGACAGTGAGCAAAAGACAAAAGCTCAGTTGGGCAGATTTGTGTGGAGCATCTGCTTTGAGCAAGTAATTAGGTGCTGAAGTAGAT----GGATTGTGTAGATGAGGTTCTATCTATTAAAGAGGTTAGCCACTTATCAAGTGCTAA-------------CAGCCCATTGCAGCAGAA----GGCCGGGATGTCAGA-GGATAATT----AGCACAACAGAACASizeHit CountTotal NormTotalGSM1528817
Adult_testes		GSM1528818
Adult_testes_Mili_IP		GSM1528819
10dpp_testes
No Reads
speTri2
TTCTTAATGAT-GCCCCTAGACAGTGAGGAAGAAGACGAAGTTCAATTAAACAAATATGTGTGAAGCTCCTACTTAGAATAAAGAATTTGGTGTTAAAATAGAT---------ATACAAGTGA-GTTTGTTCCATTAAAGAGGTTAACTACTTATCAGTTAAT------GA----ATGCAACCTAGTGTAATACAA----GAC---AATATAAAAAGCATA-TTATTAAgtgctataggacaSizeHit CountTotal NormTotal
No Reads

Generated: 05/01/2015 at 12:00 AM