ID:

mmu-mir-6969

 Coordinate:

chr17:28558441-28558501 -

 Confidence:

Known

 Type:

Unknown

 [View on miRBase]
[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-27.8 -27.6 -27.6

Sense Strand Reads

GGTCCCCTGGTGAGGCAGTCAGGAACACCCTGGGAAGTACCAGACAGCCAGTTCCCAGCAGAGTAGGGAGCAAAAGATAACCAAGTGACTCTGTTGTTCCCATCTCTGCAGACCCTCTATGGGATCTACTACCGGTGTCCCTGTGAGCGGGGCCTGACCTG
****************************************............(((((((((((..((((((((.(((..((...))...))).))))))))..))))))..........)))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR065059
pancreas		 SRR065058
pancreas		 SRR042481
pancreas		 SRR077866
liver		 SRR073954
blood		 SRR037920
embryo		 SRR345196
brain		 SRR116846
epididymis		 SRR345200
brain		 SRR059769
spleen		 SRR042456
bone marrow		 SRR345203
brain		 SRR059773
spleen		 SRR345199
brain
...........................................................................................TGTTGTTCCCATCTCTGCAGT................................................. 21 1 1 1569.00 1569 843 625 96 4 0 1 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCAG.................................................. 20 0 1 622.00 622 324 244 53 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCAGA................................................. 21 0 1 363.00 363 217 129 16 1 0 0 0 0 0 0 0 0 0 0
.......................................................CAGCAGAGTAGGGAGCAAAAGA.................................................................................... 22 0 1 309.00 309 128 171 9 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCAGTA................................................ 22 2 1 200.00 200 99 88 13 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCAGAA................................................ 22 1 1 146.00 146 88 51 7 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCAGAAA............................................... 23 2 1 89.00 89 47 39 3 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCAGTT................................................ 22 2 2 76.00 152 90 56 6 0 0 0 0 0 0 0 0 0 0 0
........................................................AGCAGAGTAGGGAGCAAAAGA.................................................................................... 21 0 1 61.00 61 33 24 4 0 0 0 0 0 0 0 0 0 0 0
......................................................CCAGCAGAGTAGGGAGCAAAAGA.................................................................................... 23 0 1 42.00 42 15 21 6 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCAGTAA............................................... 23 3 5 41.20 206 79 105 21 1 0 0 0 0 0 0 0 0 0 0
.......................................................CAGCAGAGTAGGGAGCAAAAG..................................................................................... 21 0 1 40.00 40 27 13 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCAGAT................................................ 22 1 1 17.00 17 11 6 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CAGCAGAGTAGGGAGCAAAAGAA................................................................................... 23 1 1 15.00 15 7 7 1 0 0 0 0 0 0 0 0 0 0 0
........................................................AGCAGAGTAGGGAGCAAAAG..................................................................................... 20 0 1 13.00 13 6 7 0 0 0 0 0 0 0 0 0 0 0 0
......................................................CCAGCAGAGTAGGGAGCAAAAG..................................................................................... 22 0 1 12.00 12 2 9 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................CAGCAGAGTAGGGAGCAAAA...................................................................................... 20 0 1 12.00 12 5 7 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCA................................................... 19 0 1 12.00 12 7 5 0 0 0 0 0 0 0 0 0 0 0 0
........................................................AGCAGAGTAGGGAGCAAAAGAT................................................................................... 22 0 1 10.00 10 9 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CAGCAGAGTAGGGAGCAAAAGAT................................................................................... 23 0 1 10.00 10 5 4 1 0 0 0 0 0 0 0 0 0 0 0
......................................................CCAGCAGAGTAGGGAGCAA........................................................................................ 19 0 1 9.00 9 5 3 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................CAGCAGAGTAGGGAGCAAAAGAAA.................................................................................. 24 1 1 8.00 8 2 5 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCAGTC................................................ 22 1 1 8.00 8 4 3 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCAGAG................................................ 22 1 1 8.00 8 6 2 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCAGTAG............................................... 23 3 7 7.00 49 19 26 4 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCAGAAT............................................... 23 2 1 7.00 7 4 2 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................CAGCAGAGTAGGGAGCAAA....................................................................................... 19 0 1 7.00 7 5 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCAA.................................................. 20 1 2 6.50 13 4 8 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCAGTTA............................................... 23 3 6 6.00 36 20 16 0 0 0 0 0 0 0 0 0 0 0 0
........................................................AGCAGAGTAGGGAGCAAAAGAA................................................................................... 22 1 1 5.00 5 1 4 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTTCAG.................................................. 20 1 1 5.00 5 0 0 5 0 0 0 0 0 0 0 0 0 0 0
.....................................................CCCAGCAGAGTAGGGAGCAAAAGA.................................................................................... 24 0 1 5.00 5 3 2 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCAT.................................................. 20 1 4 4.25 17 3 7 7 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCATT................................................. 21 2 12 4.17 50 15 21 14 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCCG.................................................. 20 1 1 4.00 4 1 1 2 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................CTGTTGTTCCCATCTCTGCAGT................................................. 22 1 1 4.00 4 0 4 0 0 0 0 0 0 0 0 0 0 0 0
......................................................CCAGCAGAGTAGGGAGCAAAA...................................................................................... 21 0 1 4.00 4 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CAGCAGAGTAGGGAGCAAAAGT.................................................................................... 22 1 1 4.00 4 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCAGTAT............................................... 23 3 11 3.36 37 14 18 5 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCAC.................................................. 20 1 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCAGAGT............................................... 23 2 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTTCAGA................................................. 21 1 1 3.00 3 0 1 2 0 0 0 0 0 0 0 0 0 0 0
.......................................................CAGCAGAGTAGGGAGCAA........................................................................................ 18 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................CCCAGCAGAGTAGGGAGCAAAAG..................................................................................... 23 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................CCGGTGTCCCTGTGAGCGG........... 19 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................CCAGCAGAGTAGGGAGCAAAAGAT................................................................................... 24 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCAGTTT............................................... 23 3 17 2.71 46 26 20 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCATA................................................. 21 1 2 2.50 5 2 1 2 0 0 0 0 0 0 0 0 0 0 0
......................................................CCAGCAGAGTAGGGAGCAAAT...................................................................................... 21 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCAGAAG............................................... 23 2 3 2.00 6 2 3 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TGACTCTGTTGTTCCCATCTCTGCAG.................................................. 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................TACTACCGGTGTCCCTGTGAG.............. 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................ATGTTGTTCCCATCTCTGCAGA................................................. 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CAGCAGAGGAGGGAGCAAAAGA.................................................................................... 22 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
......................................................CCAGCAGAGTAGGGAGCA......................................................................................... 18 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CAGCAGAGTAGGGATCAAAAGA.................................................................................... 22 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
........................................................AGCAGAGTAGGGAGCAAAAGAAA.................................................................................. 23 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGCTCCCATCTCTGCAGA................................................. 21 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TCTGTTGTTCCCATCTCTGCAG.................................................. 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CAGCAGCGTAGGGAGCAAAAGA.................................................................................... 22 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCAAA................................................. 21 1 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCAGG................................................. 21 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................CCAGCAGAGTAGGGAGCAAAAGAAT.................................................................................. 25 2 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................ATGTTGTTCCCATCTCTGCAGT................................................. 22 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CAGCAGAGTAGGGAGCAAAAT..................................................................................... 21 1 2 1.50 3 2 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCAGC................................................. 21 1 2 1.50 3 2 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTTCAGT................................................. 21 2 8 1.38 11 0 1 10 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCAGAAAA.............................................. 24 3 7 1.29 9 6 2 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCTATCTCTGCAG.................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CAGCAGAGTAGGTAGCAAAAGA.................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCCCTGCAG.................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCAGTG................................................ 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CAGCAGAGTAGGGAGCAAAAAAG................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCAGTAAC.............................................. 24 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCAGATA............................................... 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCACAA................................................ 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................AGCAGAGTAGGGAGCAAAAGATC.................................................................................. 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................AACCCAGCAGAGTAGGGAGCAAAAG..................................................................................... 25 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................CAGCAGAGTAGGGAGCAAAAGAGA.................................................................................. 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CAGCAGAGTAGGGCGCAAAAGAAA.................................................................................. 24 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................AAGCAGAGTAGGGAGCAAAAGA.................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CAGCAGAGTAGGGAGCAAAAGTT................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CAGCAGAGTAGGGAGCAAAAGAG................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................AGCACAGTAGGGAGCAAAAGAT................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................CCCAGCAGAGTAGGGAGCAA........................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................TAGCAGAGTAGGGAGCAAAAGA.................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CAGCAGACTAGGGAGCAAAAGA.................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................GTTGTTCCCATCTCTGCAGAT................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................AGCAGAGTAGGGAGCACAAGAT................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CAGCAGAGTAGGGTGCAAAAGA.................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................CCAGCAGAGTAGGGAGCATAAGA.................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................CAGCAGAGTCGGGAGCAAAAGA.................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CTGCAGAGTAGGGAGCAAAAGA.................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................TCCCATCTCGGCGGACCCTCCA.......................................... 22 3 3 1.00 3 0 0 0 0 3 0 0 0 0 0 0 0 0 0
......................................................CCAGCAGAGTAGGGAGCAAAAA..................................................................................... 22 1 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
......................................................CCAGCAGAGTAGGCAGCAAAAG..................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGCTGTTCCCATCTCTGCAG.................................................. 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................CTGTTGTTCCCATCTCTGCAG.................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTACCCATCTCTGCAGA................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCAGACT............................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCCTCTCTGCAG.................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCAGAGTTT............................................. 25 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CAGCAGAGTAGGGTGCAAAAGAT................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................CCAGCAGAGTAGGGAGCAAAAT..................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................CAGCAGAGTAGGGAGCAACAGA.................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCAGAC................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CAGCAGAGTAGGGAGCAAAAGAAT.................................................................................. 24 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CAGCAGAGTAGGGAGCAAAAGC.................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CAGCAGAGTAGGGAGCAAAAGAAGA................................................................................. 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCCGAA................................................ 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................AGCAGAGTAGGGAGCAAAAGATG.................................................................................. 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CAGCAGAGTAGGGAGCAAAAAA.................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCGTCTCTGCAG.................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCAGAAC............................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTACAGA................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................GGTTGTTCCCATCTCTGCAG.................................................. 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................GTTGTTCCCATCTCTGCAGT................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCGG.................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................AGCAGAGTAGGGAGCAAAAGATAT................................................................................. 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................TCCGTGTGAGCGGGGCCT...... 18 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................CCAGCAGAGTAGGGAGCAAA....................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCCGT................................................. 21 2 5 0.80 4 1 0 3 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCAAT................................................. 21 2 5 0.60 3 2 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCAGAAAT.............................................. 24 3 4 0.50 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CAGCAGAGTAGGGAGCAAAAGAAG.................................................................................. 24 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CAGCAGAGTAGGGATCAAAAGAA................................................................................... 23 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCAACTCTGCAGAA................................................ 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................CCCAGCAGAGTAGGGAGCAAAAA..................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTCCCCATCTCTGCAG.................................................. 20 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGGTCCCATCTCTGCAG.................................................. 20 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................CAGCAGAGTAGGGAGCAAAAGACT.................................................................................. 24 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CAGCAGAGTAGGGAGCAAAATA.................................................................................... 22 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCAGAGA............................................... 23 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGGTGTTCCCATCTCTGCAGA................................................. 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCACTGCAG.................................................. 20 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................TGGGAAGGCCCAGACAGCCAG.............................................................................................................. 21 2 14 0.50 7 0 0 0 0 0 0 0 7 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGGAGA................................................. 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCTTCTCTGCAG.................................................. 20 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTTTTCCCATCTCTGCAG.................................................. 20 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CAGCAGAGTAGGGAGCAAAAA..................................................................................... 21 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTG..................................................... 17 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTTTTCCCATCTCTGCAGAT................................................ 22 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................CCAGCAGAGTAGGGAGCAATT...................................................................................... 21 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCACT................................................. 21 2 15 0.33 5 1 4 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCGCTGCAG.................................................. 20 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGTAG.................................................. 20 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................GTTGTTCCCATCTCTGCAGATT............................................... 22 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCAGCTCTGCAGAA................................................ 22 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TATTGTTCCCATCTCTGCAGT................................................. 21 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCTGT................................................. 21 2 9 0.22 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................GTTGTTCCCATCTCTGCAGTA................................................ 21 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCAGAAAG.............................................. 24 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................AGGGAGCAAAAGATAA................................................................................. 16 0 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTTCAT.................................................. 20 2 20 0.20 4 0 0 4 0 0 0 0 0 0 0 0 0 0 0
..............................TGGGAAGTCCCAGACAGCCAGG............................................................................................................. 22 2 10 0.20 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0
............................................................................................GTTGTTCCCATCTCTGCAGTT................................................ 21 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TTTTGTTCCCATCTCTGCAGT................................................. 21 2 12 0.17 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCAGTTTC.............................................. 24 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGTAGT................................................. 21 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................ATGTCCCTGTGGGCGGGGCC....... 20 2 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCAGTGA............................................... 23 3 18 0.17 3 1 2 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTGGTTCCCATCTCTGCAGT................................................. 21 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGGTGTTCCCATCTCTGCAGT................................................. 21 2 20 0.15 3 2 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................CGGGATGTAGTACCGGTGTC...................... 20 3 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................TGTTGTTCCCACCTCTGCAGT................................................. 21 2 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCAGTTG............................................... 23 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCATAAA............................................... 23 3 15 0.13 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGATCCCATCTCTGCAGT................................................. 21 2 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCTCATCTCTGCAGT................................................. 21 2 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................GATGTTGTTCCCATCTCTGCAGT................................................. 23 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCTATCTCTGCATA................................................. 21 2 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................TCCCATCTCTGTGGACCCTCCA.......................................... 22 3 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0
...........................................................................................AGTTGTTCCCATCTCTGCAGT................................................. 21 2 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTCCAGT................................................. 21 2 20 0.10 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCAGGAA............................................... 23 3 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................TGGGAAGGCCCAGACAGCCA............................................................................................................... 20 2 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0
..........................................................................................ATGTTGTTCCCATCTCTGCAGTA................................................ 23 3 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATTTCTGCAGT................................................. 21 2 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................GGGAGTACCAGACCGCCGGT............................................................................................................. 20 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................TGTTGTTCCCATCTCTGCAGTGT............................................... 23 3 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCCGCAGTT................................................ 22 3 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTTTTCCCATCTCTGCAGT................................................. 21 2 15 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................AGCGGAGTAGGGAACAAAA...................................................................................... 19 2 16 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................AGATAACCAGTTGACTCTGT................................................................... 20 2 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...........................................................................................TGCTGTTCCCATCTCTGCAGT................................................. 21 2 17 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTGTTCCCATCTCTTCATAA................................................ 22 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................GGGAAGGCCCAGACAGCCAG.............................................................................................................. 20 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...........................................................................................TGTTGTTCCCATGTCTGCAGTT................................................ 22 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTGGTTCCCATCTCTGCAA.................................................. 20 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................GCGGGGCCTGACC.. 13 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

CCAGGGGACCACTCCGTCAGTCCTTGTGGGACCCTTCATGGTCTGTCGGTCAAGGGTCGTCTCATCCCTCGTTTTCTATTGGTTCACTGAGACAACAAGGGTAGAGACGTCTGGGAGATACCCTAGATGATGGCCACAGGGACACTCGCCCCGGACTGGAC
***********************************............(((((((((((..((((((((.(((..((...))...))).))))))))..))))))..........)))))..**************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR073954
blood		 SRR345200
brain		 SRR345201
brain		 SRR345202
brain		 SRR073955
blood		 SRR345198
brain		 SRR345199
brain		 SRR345205
brain		 SRR391849
embryo		 SRR345197
brain		 SRR345204
brain		 SRR039153
muscle		 SRR345207
brain
......................................................................................................................TACCCTAGATGATGGCGA......................... 18 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TACGCTGGATGATGGCCA......................... 18 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................AGATGATGGCCA......................... 12 0 9 0.78 7 0 1 2 1 0 0 0 1 0 1 1 0 0
...................................................................................................................TGATACGCTAGATGATGGCGA......................... 21 3 3 0.67 2 0 0 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................TACGCTAGATGATGGCGA......................... 18 2 6 0.50 3 2 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TTGATACCCTAGATGATGGCGA......................... 22 3 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................GATGCGCTAGATGATGGCGA......................... 20 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TATGCTAGATGATGGCCA......................... 18 2 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................TACCCTAGATGCTGGCGA......................... 18 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TACCCTAGAGGATGGCGA......................... 18 2 20 0.15 3 2 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................GGTAGAGACGTCTGGCAG............................................ 18 1 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TAACCTAGATGATGGCGA......................... 18 2 18 0.11 2 2 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TATACGCTAGATGATGGCCT......................... 20 3 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................GCTACGATAGATGATGGCCA......................... 20 3 13 0.08 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................TAGATGAAGGCCACAGG..................... 17 1 14 0.07 1 0 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................GATATGCTAGATGATGGCTA......................... 20 3 18 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................AATACTCTAGATGATGGCGA......................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0
......................................................................................................................TACCCTAGATGTTGGCGA......................... 18 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................GATCCCTTAGATGCTGGCCA......................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1
..............................................................................................................................ATGATGGCCACTAGGACA................. 18 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................GATACCATAGATGCTGGCGA......................... 20 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................ATACGCTAGATGACGGCCT......................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................TGGTCTGTCGGTCGAGGGGCT...................................................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................GGTAGAGACGTCTGGG.............................................. 16 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................AGATGATGGC........................... 10 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................ACTTGATGGCCACAGGGCCA................. 20 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................TCGGTCGAGAGTCGTCTCATCG.............................................................................................. 22 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
mm10 chr17:28558391-28558551 - mmu-mir-6969 GGTCCCCTGGTGAGGCAGTCAGGAA-------------CACCCT--GGGAAGTAC-CAGACAGCCAGTTCCCAGCA-------------------------GAGTAGGGAGCAAAAGATAACCAA-----------------------------GTGACTCTGTTGTTCCCATCTCTGCAGACCCTCTATGGGATCTACTACCGGTGTCCCTGTGAGCGGGGCCTGACCTG
cavPor3 scaffold_15:36519898-36520056 + GG---------------------TgTggCAGTG-----CCCTCT--GGAAAGCCA-TCTGCTACTGGTTCCTGGCT-------------------------GGGCAGGGGACA---GACAGACAGA----GCCCAAAGCAG----CC-------CTGACAGCGCTGGCCCTGTCTCTGCAGACCATCTATGGAGTTTACTATGTGTGTCCCTGTGAACGGGGCTTGACCTG
dipOrd1 Unknown ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
hetGal2 Unknown ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ochPri2 scaffold_2264:208942-209089 - -------------------CAGGGGCAGAAGTGAGGGACAGCCA--GGG----------GA------TGCAAGGAG-------------------------GGGTGGAGGGCAGGAGA--GGCAGGCGGGC-----------CAGC------AGGTGACC--GTGGCCTCTATCTCTGCAGACCATCTACGGCGTCTACTACAAGTGCCCCTGTGAGCGGGGCCTGACCTG
oryCun2 Unknown ACCCCTCAAGAGAGGAGGCCAGGAGAAGCAGTG---------CT--GAGGAG-------------------CCCAGCAGCTGGGGGGAGGTGAGCCGGGTGGGGTGGGG-TG-G--GGCAGGCAGACGACC-----------CAGCCCTGACTCGGGGCTCCA---TCTGCGCCTGCGCAGACCATCTACGGCGTCTACTACAAGTGTCCCTGTGAGCGCGGCCTGACCTG
rn5 chr20:7839148-7839322 - GGTCCCCTGGTAAGGCAGTCAGGAA-------------CACCCT--GGGAAGTAC-CAGGCAGCCAGTTCCCAGCC-------------------------GAGTAGGGAGCAAAAGATAACCAAG----T-----------CTCCCACTATTGGTGACTCTGTTGTCCCTGTCTCTACAGACCCTCTATGGGATCTACTACAGGTGTCCCTGTGAGCGGGGCCTGACCTG
speTri2 Unknown gGCCCCCTAGGGAAGCCATCGGGAGAAA----------CACCCTCTGAAAAGGGAGGGGGCTGCTGGTTCTCCCTC-------------------------CAGGCAGGGGCAAATGATGCCCAAA-----------GCAGCCCCCCACAGTCTGTGATTCCACTGGCTCTGGCTCTGCAGACACTCTATGGGATTTACTACAAGTGTCCCTGCGAGCGGGGCCTGACCTG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
mm10
GGTCCCCTGGTGAGGCAGTCAGGAA-------------CACCCT--GGGAAGTAC-CAGACAGCCAGTTCCCAGCA-------------------------GAGTAGGGAGCAAAAGATAACCAA-----------------------------GTGACTCTGTTGTTCCCATCTCTGCAGACCCTCTATGGGATCTACTACCGGTGTCCCTGTGAGCGGGGCCTGACCTGSizeHit CountTotal NormTotalSRR042455
blood		SRR042459
blood		SRR042460
blood		SRR069834
blood		SRR073954
blood		SRR073955
blood		SRR525238
Blood		SRR525237
Blood		SRR042456
bone marrow		SRR042457
bone marrow		SRR042461
bone marrow		SRR042462
bone marrow		GSM317181
brain		GSM317182
brain		GSM361394
brain		GSM361395
brain		GSM361398
brain		GSM361399
brain		GSM361402
brain		GSM361407
brain		GSM361408
brain		GSM361415
brain		GSM361430
brain		GSM510444
brain		SRR037904
brain		SRR037905
brain		SRR037906
brain		SRR037907
brain		SRR038741
brain		SRR038744
brain		SRR039610
brain		SRR042477
brain		SRR060845
brain		SRR206939
brain		SRR206940
brain		SRR206941
brain		SRR206942
brain		SRR345196
brain		SRR345197
brain		SRR345198
brain		SRR345199
brain		SRR345200
brain		SRR345201
brain		SRR345202
brain		SRR345203
brain		SRR345204
brain		SRR345205
brain		SRR345206
brain		SRR345207
brain		SRR037919
embryo		SRR037920
embryo		SRR037921
embryo		SRR037922
embryo		SRR037923
embryo		SRR037924
embryo		SRR037925
embryo		SRR037926
embryo		SRR037927
embryo		SRR037928
embryo		SRR037929
embryo		SRR037930
embryo		SRR391845
embryo		SRR391846
embryo		SRR391847
embryo		SRR391848
embryo		SRR391849
embryo		SRR391850
embryo		SRR391851
embryo		SRR391852
embryo		SRR391853
embryo		SRR116846
epididymis		GSM566419
fibroblast		GSM566420
fibroblast		SRR039183
fibroblast		SRR039184
fibroblast		SRR039185
fibroblast		SRR039186
fibroblast		SRR042475
fibroblast		SRR390297
fibroblast		SRR390298
fibroblast		SRR042484
salivary gland		SRR042476
heart		SRR095853
heart		SRR095855BC1
heart		SRR095855BC10
heart		SRR095855BC2
heart		SRR095855BC3
heart		SRR095855BC4
heart		SRR095855BC5
heart		SRR095855BC6
heart		SRR095855BC7
heart		SRR095855BC8
heart		SRR095855BC9
heart		SRR065052
jejunum		SRR065053
jejunum		SRR065054
jejunum		SRR065055
jejunum		SRR065056
jejunum		SRR042480
kidney		SRR040488
liver		SRR042479
liver		SRR065045
liver		SRR065046
liver		SRR065047
liver		SRR065048
liver		SRR065049
liver		SRR065050
liver		SRR077864
liver		SRR077865
liver		SRR077866
liver		SRR042478
lung		SRR042468
lymph		SRR042469
lymph		SRR042470
lymph		SRR042472
lymph		SRR042473
lymph		SRR039152
muscle		SRR039153
muscle		SRR039154
muscle		SRR042483
muscle		SRR014234
ovary		SRR037896
ovary		SRR037897
ovary		SRR037898
ovary		SRR037899
ovary		SRR042486
ovary		SRR042481
pancreas		SRR065058
pancreas		SRR065059
pancreas		SRR042482
skin		SRR042463
spleen		SRR042465
spleen		SRR042466
spleen		SRR042467
spleen		SRR042471
spleen		SRR042487
spleen		SRR059768
spleen		SRR059769
spleen		SRR059770
spleen		SRR059771
spleen		SRR059772
spleen		SRR059773
spleen		GSM475281
testes		GSM509275
testes		GSM509279
testes		SRR014231
testes		SRR014235
testes		SRR014236
testes		SRR028731
testes		SRR037900
testes		SRR037901
testes		SRR037902
testes		SRR037903
testes		SRR042485
testes		SRR051939
testes		SRR051940
testes		SRR069809
testes		SRR069810
testes		SRR069811
testes		SRR248523
testes		SRR248524
testes		SRR248525
testes		SRR248526
testes		SRR248527
testes		SRR363956
testes		SRR363957
testes		SRR363958
testes		SRR363959
testes		SRR363960
testes		SRR363963
testes		SRR363964
testes		SRR553582
brain		SRR553583
cerebellum		SRR553584
heart		SRR553585
kidney		SRR553602
testes		SRR553603
testes		SRR553604
testes		SRR553586
testes		SRR042464
thymus		SRR059765
thymus		SRR059766
thymus		SRR059767
thymus		SRR032476
uterus		SRR032477
uterus
.................................................................................................................................................................TGTTGTTCCCATCTCTGCAGT.................................................2111569.0015690000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000400000000000000009662584300000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGTTGTTCCCATCTCTGCAG..................................................201622.006220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000005324432400000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGTTGTTCCCATCTCTGCAGA.................................................211363.003630000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000001612921700000000000000000000000000000000000000000000000000000000
.......................................................................CAGCA-------------------------GAGTAGGGAGCAAAAGA.................................................................................................................221309.00309000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000917112800000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGTTGTTCCCATCTCTGCAGTA................................................221200.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013889900000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGTTGTTCCCATCTCTGCAGAA................................................221146.001460000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007518800000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGTTGTTCCCATCTCTGCAGAAA...............................................23189.00890000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003394700000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGTTGTTCCCATCTCTGCAGTT................................................22276.001520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006569000000000000000000000000000000000000000000000000000000000
........................................................................AGCA-------------------------GAGTAGGGAGCAAAAGA.................................................................................................................21161.00610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004243300000000000000000000000000000000000000000000000000000000
......................................................................CCAGCA-------------------------GAGTAGGGAGCAAAAGA.................................................................................................................23142.00420000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006211500000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGTTGTTCCCATCTCTGCAGTAA...............................................23541.20206000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000211057900000000000000000000000000000000000000000000000000000000
.......................................................................CAGCA-------------------------GAGTAGGGAGCAAAAG..................................................................................................................21140.00400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000132700000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGTTGTTCCCATCTCTGCAGAT................................................22117.0017000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000061100000000000000000000000000000000000000000000000000000000
.......................................................................CAGCA-------------------------GAGTAGGGAGCAAAAGAA................................................................................................................23115.001500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000017700000000000000000000000000000000000000000000000000000000
........................................................................AGCA-------------------------GAGTAGGGAGCAAAAG..................................................................................................................20113.001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007600000000000000000000000000000000000000000000000000000000
......................................................................CCAGCA-------------------------GAGTAGGGAGCAAAAG..................................................................................................................22112.001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000009200000000000000000000000000000000000000000000000000000000
.......................................................................CAGCA-------------------------GAGTAGGGAGCAAAA...................................................................................................................20112.001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007500000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGTTGTTCCCATCTCTGCA...................................................19112.001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005700000000000000000000000000000000000000000000000000000000
........................................................................AGCA-------------------------GAGTAGGGAGCAAAAGAT................................................................................................................22110.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001900000000000000000000000000000000000000000000000000000000
.......................................................................CAGCA-------------------------GAGTAGGGAGCAAAAGAT................................................................................................................23110.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014500000000000000000000000000000000000000000000000000000000
......................................................................CCAGCA-------------------------GAGTAGGGAGCAA.....................................................................................................................1919.00900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013500000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGTTGTTCCCATCTCTGCAGAG................................................2218.00800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002600000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGTTGTTCCCATCTCTGCAGTAG...............................................2377.00490000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004261900000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGTTGTTCCCATCTCTGCAGAAT...............................................2317.00700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012400000000000000000000000000000000000000000000000000000000
.......................................................................CAGCA-------------------------GAGTAGGGAGCAAA....................................................................................................................1917.00700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011500000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGTTGTTCCCATCTCTGCAA..................................................2026.501300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000018400000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGTTGTTCCCATCTCTGCAGTTA...............................................2366.00360000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000162000000000000000000000000000000000000000000000000000000000
........................................................................AGCA-------------------------GAGTAGGGAGCAAAAGAA................................................................................................................2215.00500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004100000000000000000000000000000000000000000000000000000000
.....................................................................CCCAGCA-------------------------GAGTAGGGAGCAAAAGA.................................................................................................................2415.00500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002300000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGTTGTTCCCATCTCTGCAT..................................................2044.251700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000077300000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGTTGTTCCCATCTCTGCATT.................................................21124.175000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014211500000000000000000000000000000000000000000000000000000000
................................................................................................................................................................CTGTTGTTCCCATCTCTGCAGT.................................................2214.00400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000
......................................................................CCAGCA-------------------------GAGTAGGGAGCAAAA...................................................................................................................2114.00400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002200000000000000000000000000000000000000000000000000000000
.......................................................................CAGCA-------------------------GAGTAGGGAGCAAAAGT.................................................................................................................2214.00400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002200000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGTTGTTCCCATCTCTGCAGTAT...............................................23113.36370000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005181400000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGTTGTTCCCATCTCTGCAC..................................................2013.00300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGTTGTTCCCATCTCTGCAGAGT...............................................2313.00300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000000000
.......................................................................CAGCA-------------------------GAGTAGGGAGCAA.....................................................................................................................1813.00300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000
.....................................................................CCCAGCA-------------------------GAGTAGGGAGCAAAAG..................................................................................................................2313.00300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................CCGGTGTCCCTGTGAGCGG...........1913.00300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000
......................................................................CCAGCA-------------------------GAGTAGGGAGCAAAAGAT................................................................................................................2413.00300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGTTGTTCCCATCTCTGCAGTTT...............................................23172.71460000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000202600000000000000000000000000000000000000000000000000000000
......................................................................CCAGCA-------------------------GAGTAGGGAGCAAAT...................................................................................................................2112.00200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGTTGTTCCCATCTCTGCAGAAG...............................................2332.00600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013200000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................TGACTCTGTTGTTCCCATCTCTGCAG..................................................2612.00200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................TACTACCGGTGTCCCTGTGAG..............2112.00200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000
......................................................................CCAGCA-------------------------GAGTAGGGAGCA......................................................................................................................1812.00200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................TCTGTTGTTCCCATCTCTGCAG..................................................2212.00200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGTTGTTCCCATCTCTGCAGG.................................................2112.00200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000
......................................................................CCAGCA-------------------------GAGTAGGGAGCAAAAGAAT...............................................................................................................2512.00200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000
.......................................................................CAGCA-------------------------GAGTAGGGAGCAAAAT..................................................................................................................2121.50300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGTTGTTCCCATCTCTGCAGC.................................................2121.50300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGTTGTTCCCATCTCTGCAGAAAA..............................................2471.29900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012600000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGTTGTTCCCATCTCTGCAGTG................................................2211.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGTTGTTCCCATCTCTGCAGATA...............................................2311.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
........................................................................AGCA-------------------------GAGTAGGGAGCAAAAGATC...............................................................................................................2311.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
.......................................................................CAGCA-------------------------GAGTAGGGAGCAAAAGAG................................................................................................................2311.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
.....................................................................CCCAGCA-------------------------GAGTAGGGAGCAA.....................................................................................................................2011.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................GTTGTTCCCATCTCTGCAGAT................................................2111.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
......................................................................CCAGCA-------------------------GAGTAGGGAGCAAAAA..................................................................................................................2221.00200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................CTGTTGTTCCCATCTCTGCAG..................................................2111.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGTTGTTCCCATCTCTGCAGACT...............................................2311.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
......................................................................CCAGCA-------------------------GAGTAGGGAGCAAAAT..................................................................................................................2211.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGTTGTTCCCATCTCTGCAGAC................................................2211.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.......................................................................CAGCA-------------------------GAGTAGGGAGCAAAAGAAT...............................................................................................................2411.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
.......................................................................CAGCA-------------------------GAGTAGGGAGCAAAAGC.................................................................................................................2211.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
........................................................................AGCA-------------------------GAGTAGGGAGCAAAAGATG...............................................................................................................2311.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................GTTGTTCCCATCTCTGCAGT.................................................2011.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
........................................................................AGCA-------------------------GAGTAGGGAGCAAAAGATAT..............................................................................................................2411.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
......................................................................CCAGCA-------------------------GAGTAGGGAGCAAA....................................................................................................................2011.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGTTGTTCCCATCTCTGCAAT.................................................2150.60300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010200000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGTTGTTCCCATCTCTGCAGAAAT..............................................2440.50200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000
.......................................................................CAGCA-------------------------GAGTAGGGAGCAAAAGAAG...............................................................................................................2420.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.....................................................................CCCAGCA-------------------------GAGTAGGGAGCAAAAA..................................................................................................................2320.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.......................................................................CAGCA-------------------------GAGTAGGGAGCAAAAGACT...............................................................................................................2420.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGTTGTTCCCATCTCTGCAGAGA...............................................2320.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.......................................................................CAGCA-------------------------GAGTAGGGAGCAAAAA..................................................................................................................2120.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGTTGTTCCCATCTCTG.....................................................1730.33100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
......................................................................CCAGCA-------------------------GAGTAGGGAGCAATT...................................................................................................................2130.33100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGTTGTTCCCATCTCTGCACT.................................................21150.33500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004100000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................GTTGTTCCCATCTCTGCAGATT...............................................2230.33100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................GTTGTTCCCATCTCTGCAGTA................................................2150.20100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGTTGTTCCCATCTCTGCAGAAAG..............................................2450.20100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
.........................................................................................................AGGGAGCAAAAGATAA..............................................................................................................1650.20100000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................GTTGTTCCCATCTCTGCAGTT................................................2150.20100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGTTGTTCCCATCTCTGCAGTGA...............................................23180.17300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGTTGTTCCCATCTCTGCAGTTG...............................................2370.14100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGTTGTTCCCATCTCTGCAGGAA...............................................23200.10200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TGTTGTTCCCATCTCTGCAGTGT...............................................23130.08100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................GCGGGGCCTGACC..13200.05100000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
cavPor3
GG---------------------TgTggCAGTG-----CCCTCT--GGAAAGCCA-TCTGCTACTGGTTCCTGGCT-------------------------GGGCAGGGGACA---GACAGACAGA----GCCCAAAGCAG----CC-------CTGACAGCGCTGGCCCTGTCTCTGCAGACCATCTATGGAGTTTACTATGTGTGTCCCTGTGAACGGGGCTTGACCTGSizeHit CountTotal NormTotal
No Reads
dipOrd1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
hetGal2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
ochPri2
-------------------CAGGGGCAGAAGTGAGGGACAGCCA--GGG----------GA------TGCAAGGAG-------------------------GGGTGGAGGGCAGGAGA--GGCAGGCGGGC-----------CAGC------AGGTGACC--GTGGCCTCTATCTCTGCAGACCATCTACGGCGTCTACTACAAGTGCCCCTGTGAGCGGGGCCTGACCTGSizeHit CountTotal NormTotal
No Reads
oryCun2
ACCCCTCAAGAGAGGAGGCCAGGAGAAGCAGTG---------CT--GAGGAG-------------------CCCAGCAGCTGGGGGGAGGTGAGCCGGGTGGGGTGGGG-TG-G--GGCAGGCAGACGACC-----------CAGCCCTGACTCGGGGCTCCA---TCTGCGCCTGCGCAGACCATCTACGGCGTCTACTACAAGTGTCCCTGTGAGCGCGGCCTGACCTGSizeHit CountTotal NormTotalGSM1528820
Adult_testes		GSM1528821
Adult_testes_Mili_IP
No Reads
rn5
GGTCCCCTGGTAAGGCAGTCAGGAA-------------CACCCT--GGGAAGTAC-CAGGCAGCCAGTTCCCAGCC-------------------------GAGTAGGGAGCAAAAGATAACCAAG----T-----------CTCCCACTATTGGTGACTCTGTTGTCCCTGTCTCTACAGACCCTCTATGGGATCTACTACAGGTGTCCCTGTGAGCGGGGCCTGACCTGSizeHit CountTotal NormTotalGSM1528817
Adult_testes		GSM1528818
Adult_testes_Mili_IP		GSM1528819
10dpp_testes
No Reads
speTri2
gGCCCCCTAGGGAAGCCATCGGGAGAAA----------CACCCTCTGAAAAGGGAGGGGGCTGCTGGTTCTCCCTC-------------------------CAGGCAGGGGCAAATGATGCCCAAA-----------GCAGCCCCCCACAGTCTGTGATTCCACTGGCTCTGGCTCTGCAGACACTCTATGGGATTTACTACAAGTGTCCCTGCGAGCGGGGCCTGACCTGSizeHit CountTotal NormTotal
No Reads

Generated: 04/30/2015 at 08:23 PM