ID:

mmu-mir-669a-3

 Coordinate:

chr2:10474433-10474541 +

 Confidence:

Known

 Type:

Unknown

 [View on miRBase]
[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-35.0
mature
star
  1. chr2:10474460-10474483 +
  2. chr2:10476872-10476895 +
  3. chr2:10479330-10479353 +
  4. chr2:10481776-10481799 +
  5. chr2:10484211-10484234 +
  6. chr2:10486668-10486691 +
  7. chr2:10489130-10489153 +
  8. chr2:10491581-10491604 +
  9. chr2:10494043-10494066 +
  10. chr2:10496511-10496534 +
  11. chr2:10498926-10498949 +
  12. chr2:10501354-10501377 +
  13. chr2:10503806-10503829 +
  14. chr2:10510185-10510208 +
  15. chr2:10512222-10512245 +

Sense Strand Reads

GTATCAGGAGTTCAAATTCATACTTATCCTCATGAGAGATCAGCCTGTGATTCCTCCATGTATGTGCATGTGTGTATAGTTGTGTGTGCATGTTCATGTCTATATTTGAATATACATAACATACACACACATGTATAAACGCAAGCACACATACACAGACACAGGAATGGCATTCGCCAATCCCTTTGAATGATAAGTGATGTAGAGTT
**************************************************************(((((.(((((.((((..((((((((.(((((.((((.(((......))).))))))))).))))))))..)))).))))).)))))..********************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR390298
fibroblast		 SRR014231
testes		 SRR059765
thymus		 SRR059767
thymus		 SRR391847
embryo		 SRR391846
embryo		 SRR391853
embryo		 SRR039185
fibroblast		 SRR391852
embryo		 SRR391845
embryo		 SRR039183
fibroblast		 SRR391851
embryo		 SRR059768
spleen		 SRR039186
fibroblast		 SRR059770
spleen		 SRR039184
fibroblast		 SRR390297
fibroblast		 SRR069809
testes		 SRR037925
embryo		 SRR037924
embryo		 SRR059766
thymus		 SRR248527
testes		 SRR391848
embryo		 GSM475281
testes		 SRR037929
embryo		 SRR391849
embryo		 SRR037928
embryo		 SRR248524
testes		 SRR037921
embryo		 SRR391850
embryo		 SRR059769
spleen		 SRR248525
testes		 SRR073954
blood		 GSM510444
brain		 SRR248523
testes		 SRR040488
liver		 SRR069810
testes		 SRR037920
embryo		 SRR037923
embryo		 SRR248526
testes		 SRR042471
spleen		 SRR116846
epididymis		 SRR037930
embryo		 SRR037906
brain		 SRR042470
lymph		 SRR042473
lymph		 SRR037927
embryo		 SRR069811
testes		 SRR037926
embryo		 SRR037922
embryo		 SRR037902
testes		 SRR042466
spleen		 SRR039610
brain		 SRR042465
spleen		 SRR042475
fibroblast		 SRR038741
brain		 SRR032477
uterus		 SRR037901
testes		 SRR206942
brain		 SRR038744
brain		 SRR206941
brain		 SRR032476
uterus		 SRR042459
blood		 SRR525238
Blood		 SRR014235
testes		 SRR042469
lymph		 SRR042456
bone marrow		 SRR042472
lymph		 SRR042462
bone marrow		 SRR037905
brain		 SRR037907
brain		 SRR095853
heart		 SRR042464
thymus		 SRR037903
testes		 SRR037919
embryo		 SRR553586
testes		 SRR553603
testes		 GSM509279
testes		 SRR042487
spleen		 SRR042467
spleen		 SRR553604
testes		 GSM509275
testes		 SRR525237
Blood		 SRR042483
muscle		 SRR051940
testes		 SRR073955
blood		 SRR042463
spleen		 SRR553582
brain		 SRR206939
brain		 SRR042468
lymph		 SRR553583
cerebellum		 SRR553585
kidney		 SRR206940
brain		 SRR065052
jejunum		 SRR363964
testes		 SRR014234
ovary		 SRR065058
pancreas		 SRR042461
bone marrow		 SRR014236
testes		 SRR037897
ovary		 SRR037904
brain		 SRR042460
blood		 SRR042484
salivary gland		 SRR042455
blood		 SRR095855BC1
heart		 SRR553602
testes		 SRR065059
pancreas		 GSM566419
fibroblast		 SRR345203
brain		 SRR042481
pancreas		 GSM317181
brain		 SRR037900
testes		 SRR095855BC2
heart		 SRR065055
jejunum		 SRR345202
brain		 SRR345198
brain		 SRR095855BC5
heart		 SRR042477
brain		 SRR069834
blood		 SRR042486
ovary		 SRR345207
brain		 GSM566420
fibroblast		 SRR065054
jejunum		 SRR077866
liver		 SRR553584
heart		 SRR042478
lung		 SRR345196
brain		 SRR042485
testes		 SRR345205
brain		 SRR059771
spleen		 SRR345197
brain		 GSM317182
brain		 SRR065049
liver		 SRR345201
brain		 SRR060845
brain		 SRR065053
jejunum		 SRR077864
liver		 SRR077865
liver		 SRR345204
brain		 SRR345206
brain		 SRR037898
ovary		 SRR037899
ovary		 SRR042480
kidney		 SRR051939
testes		 SRR065045
liver		 SRR065056
jejunum		 SRR345199
brain
.................................................................................................................ACATAACATACACACACATGTAT......................................................................... 23 0 1 2932.00 2932 2157 0 4 2 6 13 139 3 104 5 3 80 0 2 0 4 71 13 44 31 0 8 6 22 27 2 24 4 25 3 0 5 11 9 9 0 3 9 8 2 3 8 7 6 1 0 3 0 4 2 1 0 5 0 4 3 1 3 2 0 1 0 1 1 0 1 1 0 2 1 3 0 0 2 1 0 0 1 0 1 1 1 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................AGTTGTGTGTGCATGTTCATGTCT............................................................................................................ 24 0 15 1443.27 21649 0 4351 2325 1233 862 826 155 1034 218 796 978 161 531 841 616 684 55 460 131 39 526 440 469 322 284 433 76 306 123 254 184 185 70 66 153 175 148 52 24 69 59 20 46 29 32 35 60 73 23 31 42 17 23 25 16 17 10 17 31 34 18 11 18 9 52 5 11 6 8 12 5 0 10 8 13 6 11 1 6 0 8 1 6 6 1 14 7 5 8 1 3 0 8 2 0 2 3 5 7 1 4 4 3 1 3 5 5 1 0 0 5 6 1 1 0 0 2 1 3 2 0 1 0 1 2 0 0 0 1 0 0 0 0 0 1 1 1 0 0 0 0 0 0 1 0 0 0
.............................................................................AGTTGTGTGTGCATGTTCATGT.............................................................................................................. 22 0 15 754.40 11316 0 15 1355 1029 561 478 33 592 79 438 474 42 775 434 689 401 36 435 76 41 433 284 173 237 109 115 50 126 51 86 220 85 31 65 64 92 83 17 19 73 83 14 12 24 62 74 26 55 13 15 22 53 19 37 20 16 8 10 17 15 16 11 9 15 2 24 9 20 0 6 1 0 12 8 8 3 6 1 16 9 3 1 14 13 2 4 7 8 6 11 1 0 5 1 0 5 9 5 1 1 1 2 3 7 0 1 1 1 2 1 1 2 1 2 4 0 0 2 0 2 3 1 3 1 0 1 0 1 0 3 0 0 1 0 1 0 1 1 0 0 0 1 0 0 0 1 0
.............................................................................AGTTGTGTGTGCATGTTCATGTC............................................................................................................. 23 0 15 588.33 8825 0 41 212 113 1110 1005 146 607 207 651 405 148 72 473 59 372 152 191 111 57 78 329 378 64 121 285 49 199 63 198 22 78 76 19 63 94 25 21 27 48 48 5 16 9 33 20 26 15 11 11 6 27 5 11 14 5 9 3 11 6 9 3 6 2 10 5 8 7 2 3 4 0 8 2 12 4 4 0 6 0 5 0 3 3 1 5 0 3 4 3 3 0 1 0 0 3 1 4 2 0 4 3 0 0 3 3 0 1 1 0 2 0 0 1 0 0 1 1 2 1 1 1 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................CATAACATACACACACATGTAT......................................................................... 22 0 1 193.00 193 1 0 0 4 0 0 19 2 12 0 1 14 1 0 0 2 12 1 22 27 0 1 1 1 8 0 15 2 5 0 0 0 2 4 0 0 0 6 5 0 0 0 3 3 1 1 2 0 3 4 2 0 0 0 0 1 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................AGTTGTGTGTGCATGTTCATG............................................................................................................... 21 0 16 138.69 2219 0 0 159 143 318 265 16 69 14 184 40 12 149 41 120 63 0 52 11 6 38 49 29 36 13 18 6 13 4 16 28 20 3 12 8 6 8 0 4 32 20 6 0 3 10 18 4 4 3 2 0 13 3 17 0 1 1 1 2 7 4 2 2 7 0 7 1 9 2 2 0 0 6 0 1 3 3 0 8 0 4 0 3 4 0 1 2 5 1 2 1 2 2 0 0 3 1 0 0 0 0 1 0 2 0 2 0 1 0 0 0 0 1 2 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................AGTTGTGTGTGCATGTTCATGTCA............................................................................................................ 24 1 15 130.40 1956 0 131 191 84 96 90 52 125 55 59 146 57 34 119 33 78 77 20 34 8 60 16 80 5 18 78 5 7 19 47 9 2 2 6 1 17 3 9 2 1 5 2 5 1 0 3 9 1 4 5 4 0 3 0 4 1 1 1 1 2 1 1 1 1 0 1 1 2 1 1 0 0 1 1 2 0 0 0 2 0 0 0 1 0 0 0 1 0 0 2 0 0 2 0 0 0 0 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................ACATAACATACACACACATGTA.......................................................................... 22 0 1 102.00 102 2 0 0 0 5 3 19 1 13 0 0 9 0 1 1 0 14 4 0 1 1 1 0 3 2 1 2 0 0 0 0 1 0 2 1 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 3 0 0 0 0 1 1 0 0 0 1 0 1 0 0 0 1 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................TACATAACATACACACACATGT........................................................................... 22 0 1 74.00 74 0 0 3 7 1 1 5 2 8 0 0 4 3 0 2 2 0 6 0 0 0 1 0 6 1 0 4 0 0 0 0 2 1 2 0 0 1 0 0 0 0 4 0 0 0 0 0 2 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................AGTTGTGTGTGCATGTTCAT................................................................................................................ 20 0 16 52.69 843 0 0 98 95 42 26 1 10 3 27 13 1 102 7 67 17 0 23 0 1 11 8 1 56 19 2 8 5 0 1 27 15 1 15 2 0 11 3 1 3 4 2 1 4 10 16 2 3 0 1 5 8 2 2 0 1 1 4 0 1 1 1 1 7 0 2 1 4 0 1 1 0 1 2 1 0 1 1 1 1 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 3 0 0 1 0 1 0 0 0 0 0 2 7 0 0 1 0 0 0 1 0 0 0 0 0 0 0 4 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................AGTTGTGTGTGCATGTTCATGTCTT........................................................................................................... 25 1 15 47.07 706 0 333 57 23 7 23 1 10 0 18 15 1 7 9 24 6 0 25 0 0 16 3 7 9 6 6 0 11 4 8 5 3 4 0 0 3 22 0 0 0 2 0 1 0 5 1 1 2 0 0 0 2 0 2 0 1 0 0 1 1 0 1 3 0 3 2 1 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 2 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TAGTTGTGTGTGCATGTTCATGT.............................................................................................................. 23 0 15 38.00 570 0 5 40 18 37 36 4 47 17 15 46 3 9 26 16 25 0 37 2 0 10 8 18 6 3 10 3 2 2 12 5 1 7 5 1 6 7 1 1 5 5 2 0 2 12 4 2 0 0 0 1 5 4 1 2 2 0 1 1 1 2 0 3 0 0 1 1 0 0 0 2 0 0 1 1 0 0 0 0 0 0 1 1 0 0 1 0 1 2 1 1 1 2 0 0 0 0 0 1 0 1 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................ACATAACATACACACACATGT........................................................................... 21 0 3 37.67 113 1 0 6 9 0 0 6 2 5 1 4 3 10 1 6 3 2 0 0 0 1 6 0 5 3 1 1 1 1 0 2 1 0 5 1 0 1 1 1 1 0 4 0 1 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 1 0 0 0 1 0 0 0 2 0 1 0 0 0 0 0 1 2 0 0 0 0 1 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................AGTTGTGTGTGCATGTTCA................................................................................................................. 19 0 16 23.13 370 0 0 57 63 34 19 0 1 0 13 8 1 36 4 20 3 0 19 0 0 8 1 2 8 1 3 0 1 0 0 4 1 0 2 0 0 1 0 0 1 7 0 0 1 5 7 0 0 0 0 0 2 0 6 0 0 2 0 0 0 0 1 0 4 0 2 0 2 0 1 0 0 0 0 0 0 0 0 3 0 0 0 1 1 0 1 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 4 0 0 0 0 0 1 0 0 0 0 0 0 2 0 0 0 0 0 0 1
.............................................................................AGTTGTGTGTGCATGTTCATGTT............................................................................................................. 23 1 15 22.00 330 0 1 44 32 9 9 0 6 1 6 4 0 47 3 35 4 0 8 3 1 9 3 1 10 3 5 2 1 2 3 13 2 1 1 2 2 5 2 0 0 3 1 0 0 5 7 0 6 0 0 1 2 0 3 1 0 0 0 0 1 0 0 0 2 1 1 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 2 1 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................AGTTGTGTGTGCATGTTCATTTCT............................................................................................................ 24 1 15 20.73 311 0 49 2 66 0 1 0 1 0 0 1 0 27 2 65 1 0 0 0 6 39 0 0 1 3 0 8 0 1 0 15 1 0 0 0 2 1 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 4 0 3 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................AGTTGTGTGTGCATGTTCATGTA............................................................................................................. 23 1 18 17.11 308 0 3 39 17 5 10 5 23 4 5 12 9 19 11 13 12 0 11 4 2 12 2 14 2 3 7 0 6 2 2 8 0 2 0 0 4 4 0 0 0 4 1 2 0 1 3 1 1 1 0 0 3 0 4 1 0 1 0 0 1 1 4 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................AGTTGTGTGTGCATGTTCATGTAT............................................................................................................ 24 1 17 16.71 284 0 38 45 27 6 9 0 3 2 8 16 1 21 12 24 9 0 1 1 0 14 0 0 1 3 1 2 2 2 1 14 1 0 2 0 2 2 1 0 0 0 0 2 1 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 1 0 4 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................AGTTGTGTGTGCATGTTCATGA.............................................................................................................. 22 1 18 15.83 285 0 0 37 43 3 5 2 3 3 6 5 1 42 5 33 2 0 4 1 0 14 3 2 6 2 2 0 1 0 3 15 1 3 2 0 0 1 1 1 4 0 0 1 1 2 3 0 0 0 1 0 1 0 2 0 0 0 0 0 0 0 3 0 5 0 0 0 2 0 1 0 0 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................ATAACATACACACACATGTAT......................................................................... 21 0 2 15.00 30 0 0 0 0 1 0 3 0 4 1 0 5 0 1 0 0 0 0 3 1 0 0 0 1 1 0 1 0 1 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CATAACATACACACACATGTA.......................................................................... 21 0 1 14.00 14 0 0 0 0 0 0 2 0 2 0 0 0 0 0 0 0 0 0 4 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................AGTTGTGTGTGCATGTTCATGTCG............................................................................................................ 24 1 15 13.47 202 0 12 16 5 5 0 6 14 10 5 18 2 3 17 3 8 0 0 0 0 6 7 12 2 0 18 1 3 0 14 0 3 0 1 1 0 0 0 1 1 0 0 1 0 1 0 0 0 1 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................AGTTGTGTGTGCATGTTCATGTCTTT.......................................................................................................... 26 1 15 13.33 200 0 105 5 5 0 0 0 1 0 0 4 0 6 0 6 1 0 8 1 0 3 2 0 7 0 0 0 0 0 0 0 1 0 0 2 3 6 0 0 1 5 0 0 0 7 4 0 1 0 0 0 2 0 1 0 0 0 0 0 0 0 0 2 0 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................AGTTGTGTGTGCATGTTCATGTTT............................................................................................................ 24 1 15 13.33 200 0 26 20 13 2 4 0 5 0 1 3 1 12 2 19 1 0 0 0 9 2 2 0 2 1 0 19 0 0 1 10 0 1 0 0 0 6 6 0 0 3 2 1 0 3 5 0 0 0 1 0 1 0 1 0 0 0 3 0 0 0 0 1 4 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.............................................................................AGTTGTGTGTGCATGTTC.................................................................................................................. 18 0 16 11.63 186 0 0 16 11 17 10 0 5 1 18 6 0 16 5 4 15 0 2 0 0 2 14 1 6 2 0 0 4 0 2 1 4 0 3 5 0 0 1 0 4 2 0 1 3 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................AGTTGTGTGTGCATGTTCATGTCTA........................................................................................................... 25 0 15 11.13 167 0 66 11 8 4 3 0 11 1 9 12 0 1 10 2 7 0 5 0 0 1 0 1 1 0 1 1 1 2 2 0 0 1 0 0 1 2 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................AGTTGTGTGTGCATGTTCATTT.............................................................................................................. 22 1 16 9.00 144 0 0 0 19 1 0 0 0 0 0 0 0 21 0 36 0 0 0 0 10 15 1 0 0 0 0 7 0 0 0 4 0 0 2 0 0 0 3 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 1 0 0 2 1 0 2 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0
..................................................................................................................CATAACATACACACACATGT........................................................................... 20 0 3 8.67 26 0 0 3 2 0 0 0 5 0 0 4 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................TCATAACATACACACACATGTAT......................................................................... 23 1 1 8.00 8 2 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................AGTTGTGTGTGCATGTTCATGTAA............................................................................................................ 24 2 18 7.00 126 0 21 17 8 7 6 0 4 0 1 4 3 4 3 9 8 0 1 0 1 4 0 2 0 1 1 0 0 0 1 3 0 0 0 0 1 0 1 0 1 1 0 0 0 0 1 1 0 0 1 0 0 0 0 1 0 1 0 0 0 1 1 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................ACATAACATACACACACATGTATT........................................................................ 24 1 1 7.00 7 0 0 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TAGTTGTGTGTGCATGTTCATGTC............................................................................................................. 24 0 15 6.53 98 0 5 0 2 5 6 1 5 4 3 3 1 0 5 1 6 0 11 1 0 0 9 5 0 0 3 0 1 2 1 0 1 1 1 0 0 0 0 0 1 1 0 0 0 3 2 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................GAGACATAACATACACACACATGTAT......................................................................... 26 2 1 6.00 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................ACATAACATACACACACATG............................................................................ 20 0 4 5.75 23 0 0 1 0 0 0 3 0 5 0 0 6 0 0 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................AGTTGTGTGTGCATGTTCATGTCTAT.......................................................................................................... 26 0 15 5.00 75 0 46 3 0 0 0 0 1 0 0 5 0 3 1 1 1 0 2 0 0 0 0 0 1 2 2 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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..........................................................................ATCAGTTGTGTGTGCATGTTCATGTCT............................................................................................................ 27 3 15 0.47 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 3 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................AGTTGTGTCTGCATGTTCATGTC............................................................................................................. 23 1 15 0.47 7 0 0 1 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................AGTTGTGTGTGCACGTTCATGTCA............................................................................................................ 24 2 15 0.47 7 0 0 2 0 0 1 0 0 0 0 2 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................AGTTGTGGGTGCATGTTCATGTC............................................................................................................. 23 1 15 0.47 7 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CATAGTCCTCAAGTTTAAGTATGAATAGGAGTACTCTCTAGTCGGACACTAAGGAGGTACATACACGTACACACATATCAACACACACGTACAAGTACAGATATAAACTTATATGTATTGTATGTGTGTGTACATATTTGCGTTCGTGTGTATGTGTCTGTGTCCTTACCGTAAGCGGTTAGGGAAACTTACTATTCACTACATCTCAA
**********************************************************(((((.(((((.((((..((((((((.(((((.((((.(((......))).))))))))).))))))))..)))).))))).)))))..************************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM361408
brain		 GSM361398
brain		 GSM361430
brain		 GSM361407
brain		 GSM361415
brain		 GSM361402
brain		 GSM361395
brain		 GSM361394
brain		 GSM361399
brain		 SRR039152
muscle		 SRR039153
muscle		 SRR391845
embryo		 SRR345198
brain		 SRR391851
embryo		 SRR039610
brain		 SRR037904
brain		 SRR037928
embryo
.............................................................................TCAACACACACGTACAAGTACAGA............................................................................................................ 24 0 15 10.53 158 45 39 28 7 7 8 8 8 8 0 0 0 0 0 0 0 0
.............................................................................TCAACACACACGTACAAGTACA.............................................................................................................. 22 0 15 7.27 109 39 23 17 4 4 7 7 4 4 0 0 0 0 0 0 0 0
.............................................................................TCAACACACACGTACAAGTACAG............................................................................................................. 23 0 15 2.13 32 6 10 2 2 2 4 4 1 1 0 0 0 0 0 0 0 0
.............................................................................TCACCACACACGTACAAGTACAGA............................................................................................................ 24 1 15 1.47 22 9 6 3 0 0 2 2 0 0 0 0 0 0 0 0 0 0
.............................................................................TCAACACACACGTACAAGTACAGC............................................................................................................ 24 1 15 1.27 19 0 0 1 9 9 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCACCACACACGTACAAGTACA.............................................................................................................. 22 1 16 1.00 16 7 3 0 1 1 2 2 0 0 0 0 0 0 0 0 0 0
.............................................................................TCAACACACACGTACAAGTAC............................................................................................................... 21 0 16 1.00 16 3 1 4 2 2 1 1 1 1 0 0 0 0 0 0 0 0
.............................................................................TCAACACACACGTACAAGTACC.............................................................................................................. 22 1 16 0.88 14 0 0 0 7 7 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCCACACACACGTACAAGTACAGA............................................................................................................ 24 1 15 0.80 12 3 1 0 1 1 1 1 2 2 0 0 0 0 0 0 0 0
.............................................................................TCAACACACACGTACAAGTACAGT............................................................................................................ 24 1 15 0.80 12 1 2 1 3 3 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................TCAACCCACACGTACAAGTACAGA............................................................................................................ 24 1 15 0.73 11 2 1 0 1 1 3 3 0 0 0 0 0 0 0 0 0 0
............................................................................ATCAACACACACGTACAAGTACA.............................................................................................................. 23 0 15 0.67 10 2 2 0 2 2 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................CCAACACACACGTACAAGTACAGA............................................................................................................ 24 1 15 0.60 9 6 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TAAACACACACGTACAAGTACAGA............................................................................................................ 24 1 17 0.59 10 6 0 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0
...................................................................................................................TATTGTATGTGTGTGTACATA......................................................................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................ATCAACACACACGTACAAGTACC.............................................................................................................. 23 1 16 0.50 8 0 0 0 4 4 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCAACACACACGTACAAGTACAGAA........................................................................................................... 25 1 15 0.47 7 3 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0
.............................................................................TAAACACACACGTACAAGTACAG............................................................................................................. 23 1 17 0.41 7 3 0 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0
.............................................................................TCAACCCACACGTACAAGTACAGC............................................................................................................ 24 2 15 0.40 6 0 0 0 3 3 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCAACACACACGTACAAGTACAA............................................................................................................. 23 1 15 0.33 5 1 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................TCAACACACACGTACAAGTACAGTA........................................................................................................... 25 2 17 0.29 5 0 1 0 1 1 0 0 1 1 0 0 0 0 0 0 0 0
.............................................................................TCAACACACACGTACAAGTACAGAT........................................................................................................... 25 0 15 0.27 4 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCAACCCACACGTACAAGTACA.............................................................................................................. 22 1 15 0.27 4 1 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................TCAACACCCACGTACAAGTACAGC............................................................................................................ 24 2 15 0.27 4 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCAACCCCCACGTACAAGTACA.............................................................................................................. 22 2 19 0.26 5 1 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0
.............................................................................TCAACACACACGTACAAGT................................................................................................................. 19 0 16 0.25 4 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCCACACACACGTACAAGTACAGC............................................................................................................ 24 2 16 0.25 4 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCACCACACACGTACAAGTACAGT............................................................................................................ 24 2 16 0.25 4 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCAACACACACGTACAAGTA................................................................................................................ 20 0 16 0.25 4 2 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0
.............................................................................TCCACCCACACGTACAAGTACAGC............................................................................................................ 24 3 17 0.24 4 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCAACACACACGTACAAGTACT.............................................................................................................. 22 1 18 0.22 4 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCAACACCCACGTACAAGTACAGA............................................................................................................ 24 1 15 0.20 3 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0
.............................................................................TCAACACCCACGTACAAGTACA.............................................................................................................. 22 1 15 0.20 3 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0
............................................................................ATCAACACACACGTACAAGTACAGA............................................................................................................ 25 0 15 0.20 3 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................TTTATTGTATGTGTGTGTACATA......................................................................... 23 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCACCACACACGTACAAGTACAG............................................................................................................. 23 1 15 0.13 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCAACACCCACGTACAAGTACAGT............................................................................................................ 24 2 15 0.13 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................CTCAACCCACACGTACAAGTACAG............................................................................................................. 24 2 15 0.13 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................TCAACACACACGTACAAGTACAGATAT......................................................................................................... 27 0 15 0.13 2 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0
.............................................................................TCAACACACCCGTACAAGTACAGC............................................................................................................ 24 2 15 0.13 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCCACACACACGTACAAGTACAGAT........................................................................................................... 25 1 15 0.13 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCAACACACAAGTACAAGTACAGC............................................................................................................ 24 2 15 0.13 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCAACACGCACGTACAAGTACA.............................................................................................................. 22 1 15 0.13 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCACCACCCACGTACAAGTACAGA............................................................................................................ 24 2 15 0.13 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................TCAACCCACACGTACAAGTACAG............................................................................................................. 23 1 15 0.13 2 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0
.............................................................................TCAACACACCCGTACAAGTACAGAA........................................................................................................... 25 2 15 0.13 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................TCAACACCCGCGTACAAGTACAGC............................................................................................................ 24 3 15 0.13 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCAACACCCACGTACAAGTACAGATGA......................................................................................................... 27 3 15 0.13 2 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0
.............................................................................TCAACACACACGTACAAGTACAGAAT.......................................................................................................... 26 2 15 0.13 2 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0
.............................................................................TCAACACACCCGTACAAGTACA.............................................................................................................. 22 1 15 0.13 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCAACACACACGTACAAGTT................................................................................................................ 20 1 16 0.13 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................ATCACCACACACGTACAAGTACA.............................................................................................................. 23 1 16 0.13 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................TCACCACACACGTACAAGTACAGC............................................................................................................ 24 2 16 0.13 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCAACACACGCGTACAAGTAC............................................................................................................... 21 1 16 0.13 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................TCACCACACACGTACAAGTAC............................................................................................................... 21 1 17 0.12 2 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0
.............................................................................TCACCACACCCGTACAAGTACA.............................................................................................................. 22 2 17 0.12 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................TCAACACACACGTACAAGTACATA............................................................................................................ 24 1 17 0.12 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCCCCACACACGTACAAGTACAGA............................................................................................................ 24 2 17 0.12 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................TCCACCCACCCGTACAAGTACAGA............................................................................................................ 24 3 17 0.12 2 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0
.............................................................................TCAACACACACGTACAAGTACGG............................................................................................................. 23 1 17 0.12 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCAACACACCCGTACAAGTACC.............................................................................................................. 22 2 18 0.11 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCAACCCCCACGTACAAGTACAGC............................................................................................................ 24 3 18 0.11 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCAACACACACGTACAAGTC................................................................................................................ 20 1 18 0.11 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................CCAACACACACGTACAAGTACA.............................................................................................................. 22 1 19 0.11 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TGAACACACACGTACAAGTACA.............................................................................................................. 22 1 20 0.10 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................CTCAACACACCCGTACAAGTACC.............................................................................................................. 23 3 20 0.10 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCCACACACACGTACAAGTACA.............................................................................................................. 22 1 20 0.10 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................CCGCAAGCGGGTAGGGAA....................... 18 2 20 0.10 2 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0
.............................................................................TCACCACACACGTACAAGTACT.............................................................................................................. 22 2 20 0.10 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................ACAACACACACGTACAAGTACA.............................................................................................................. 22 1 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TAAACACACACGTACAAGTACAGT............................................................................................................ 24 2 20 0.10 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................GGAAACTTACTATTCA........... 16 0 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.............................................................................TCAACACCCACTTACAAGTACAGA............................................................................................................ 24 2 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCAACCCACCCGTACAAGTACAGA............................................................................................................ 24 2 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCAACACACACGTACAAGTACAGATAA......................................................................................................... 27 1 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCAACACACACGTACAAGTACAGG............................................................................................................ 24 1 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCAACACACACGTACAAGTACAGAAA.......................................................................................................... 26 1 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCAAACCACACGTACAAGTACAGA............................................................................................................ 24 2 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCAACCCCCACGTACAAGTACAG............................................................................................................. 23 2 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................CCACCACACACGTACAAGTACAGA............................................................................................................ 24 2 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCAACACACACTTACAAGTACAGA............................................................................................................ 24 1 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................ATCAACACACACGTACAAGTACAA............................................................................................................. 24 1 15 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCAACACCCACGTACAAGTACAGAA........................................................................................................... 25 2 15 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCAAAAAACACGTACAAGTACAGA............................................................................................................ 24 2 16 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................ATCAACACACACGTACAAGTAC............................................................................................................... 22 0 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................ACAACACACACGTACAAGTACAG............................................................................................................. 23 1 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCAACACATACGTACAAGTACA.............................................................................................................. 22 1 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................CCAACACACACGTACAAGTACAG............................................................................................................. 23 1 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCAACACCAAGGTACAAGTACAGA............................................................................................................ 24 3 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCAACACACACGTGCAAGTACA.............................................................................................................. 22 1 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................CTTGCCGCAAGCGGTTAGAGAA....................... 22 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................ATCAACACACACGTACAAGTA................................................................................................................ 21 0 16 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCAACACACACGTACAGGTACA.............................................................................................................. 22 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................CCTTGCCGTGAGCGGTTAG........................... 19 2 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.............................................................................TCAACACACACGTACAAGTAT............................................................................................................... 21 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCCACACACACGTACAAGTACAGT............................................................................................................ 24 2 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TAACCACACACGTACAAGTACAGA............................................................................................................ 24 2 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TAAACACACACGTACAAGTACAGAA........................................................................................................... 25 2 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................ATCAAAACACACGTACAAGTACA.............................................................................................................. 23 1 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................AGCGGTTAGGGAACC..................... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................TGCCGCAAGCGGGTAGGGAA....................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................CCCACACACACGTACAAGTACAGA............................................................................................................ 24 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............TATAAGGATGAATAGGAGTACC.............................................................................................................................................................................. 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................TCAACACAAACGTACAAGTAT............................................................................................................... 21 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................GTAAACACACACGTACAAGTACAGA............................................................................................................ 25 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................CCGTAAGCGGGCAGGGAAGC..................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................CCAACACCCACGTACAAGTACA.............................................................................................................. 22 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................CTTGCCGTAAGCGGGTAG........................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.................................................................................................................................................GTGTTTATGCGTCGGTGTCCTT.......................................... 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
mm10 chr2:10474383-10474591 + mmu-mir-669a-3 GTATCAGGAGTTCAAATTCATACTTATCCTCATGAGAGATCAGCCTGTGATTCCTCCATGTATGTGCATGtgtgtatagttgtgtgtgcatgttcatgtctatatttgaatatacataacatacacacacatgtataaacgcaagcacacatacacagacacAGGAATGGCATTCGCCAATCCCTTTGAATGATAAGTGATGTAGAGTT
cavPor3 Unknown -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dipOrd1 Unknown -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
hetGal2 Unknown -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ochPri2 Unknown -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
oryCun2 Unknown -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
rn5 Unknown -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
speTri2 Unknown -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
mm10
GTATCAGGAGTTCAAATTCATACTTATCCTCATGAGAGATCAGCCTGTGATTCCTCCATGTATGTGCATGtgtgtatagttgtgtgtgcatgttcatgtctatatttgaatatacataacatacacacacatgtataaacgcaagcacacatacacagacacAGGAATGGCATTCGCCAATCCCTTTGAATGATAAGTGATGTAGAGTTSizeHit CountTotal NormTotalSRR042455
blood		SRR042459
blood		SRR042460
blood		SRR069834
blood		SRR073954
blood		SRR073955
blood		SRR525238
Blood		SRR525237
Blood		SRR042456
bone marrow		SRR042457
bone marrow		SRR042461
bone marrow		SRR042462
bone marrow		GSM317181
brain		GSM317182
brain		GSM361394
brain		GSM361395
brain		GSM361398
brain		GSM361399
brain		GSM361402
brain		GSM361407
brain		GSM361408
brain		GSM361415
brain		GSM361430
brain		GSM510444
brain		SRR037904
brain		SRR037905
brain		SRR037906
brain		SRR037907
brain		SRR038741
brain		SRR038744
brain		SRR039610
brain		SRR042477
brain		SRR060845
brain		SRR206939
brain		SRR206940
brain		SRR206941
brain		SRR206942
brain		SRR345196
brain		SRR345197
brain		SRR345198
brain		SRR345199
brain		SRR345200
brain		SRR345201
brain		SRR345202
brain		SRR345203
brain		SRR345204
brain		SRR345205
brain		SRR345206
brain		SRR345207
brain		SRR037919
embryo		SRR037920
embryo		SRR037921
embryo		SRR037922
embryo		SRR037923
embryo		SRR037924
embryo		SRR037925
embryo		SRR037926
embryo		SRR037927
embryo		SRR037928
embryo		SRR037929
embryo		SRR037930
embryo		SRR391845
embryo		SRR391846
embryo		SRR391847
embryo		SRR391848
embryo		SRR391849
embryo		SRR391850
embryo		SRR391851
embryo		SRR391852
embryo		SRR391853
embryo		SRR116846
epididymis		GSM566419
fibroblast		GSM566420
fibroblast		SRR039183
fibroblast		SRR039184
fibroblast		SRR039185
fibroblast		SRR039186
fibroblast		SRR042475
fibroblast		SRR390297
fibroblast		SRR390298
fibroblast		SRR042484
salivary gland		SRR042476
heart		SRR095853
heart		SRR095855BC1
heart		SRR095855BC10
heart		SRR095855BC2
heart		SRR095855BC3
heart		SRR095855BC4
heart		SRR095855BC5
heart		SRR095855BC6
heart		SRR095855BC7
heart		SRR095855BC8
heart		SRR095855BC9
heart		SRR065052
jejunum		SRR065053
jejunum		SRR065054
jejunum		SRR065055
jejunum		SRR065056
jejunum		SRR042480
kidney		SRR040488
liver		SRR042479
liver		SRR065045
liver		SRR065046
liver		SRR065047
liver		SRR065048
liver		SRR065049
liver		SRR065050
liver		SRR077864
liver		SRR077865
liver		SRR077866
liver		SRR042478
lung		SRR042468
lymph		SRR042469
lymph		SRR042470
lymph		SRR042472
lymph		SRR042473
lymph		SRR039152
muscle		SRR039153
muscle		SRR039154
muscle		SRR042483
muscle		SRR014234
ovary		SRR037896
ovary		SRR037897
ovary		SRR037898
ovary		SRR037899
ovary		SRR042486
ovary		SRR042481
pancreas		SRR065058
pancreas		SRR065059
pancreas		SRR042482
skin		SRR042463
spleen		SRR042465
spleen		SRR042466
spleen		SRR042467
spleen		SRR042471
spleen		SRR042487
spleen		SRR059768
spleen		SRR059769
spleen		SRR059770
spleen		SRR059771
spleen		SRR059772
spleen		SRR059773
spleen		GSM475281
testes		GSM509275
testes		GSM509279
testes		SRR014231
testes		SRR014235
testes		SRR014236
testes		SRR028731
testes		SRR037900
testes		SRR037901
testes		SRR037902
testes		SRR037903
testes		SRR042485
testes		SRR051939
testes		SRR051940
testes		SRR069809
testes		SRR069810
testes		SRR069811
testes		SRR248523
testes		SRR248524
testes		SRR248525
testes		SRR248526
testes		SRR248527
testes		SRR363956
testes		SRR363957
testes		SRR363958
testes		SRR363959
testes		SRR363960
testes		SRR363963
testes		SRR363964
testes		SRR553582
brain		SRR553583
cerebellum		SRR553584
heart		SRR553585
kidney		SRR553602
testes		SRR553603
testes		SRR553604
testes		SRR553586
testes		SRR042464
thymus		SRR059765
thymus		SRR059766
thymus		SRR059767
thymus		SRR032476
uterus		SRR032477
uterus
.................................................................................................................ACATAACATACACACACATGTAT.........................................................................2312932.00293201001101010020000000000090163305000012000000000000192528314443242775136623801041398003432471215700000000000000000000000000000000110000000000000000100130000000221100000312001133094528000000000010010040201
.............................................................................AGTTGTGTGTGCATGTTCATGTCT............................................................................................................24151443.27216491184370149611058500000000006641229517342311881831000000000100135212331243913123607628446796826862469433254161218155201197868410348411655030030100200002101001750000000101015326350006201002035072517059653118461600032211435152706174280114601487315330618569440000000053205118610232552612331110
.............................................................................AGTTGTGTGTGCATGTTCATGT..............................................................................................................2215754.401131679203141514905010000000000651624116151921651617000000420003817511519417613265010912438478561173115864279331411474401592434203603000010000000103210920000010111111246220740001350101219107375398316775220689300237111521021022810243583556412685732840000000810016331213554331029118
.............................................................................AGTTGTGTGTGCATGTTCATGTC.............................................................................................................2315588.338825063276523804220000000000194394565104191100000001020112216311275711111264912116651100511103782851981482071465114053726074731415200003000010000000100940000000000135337200003300101010001127048672225900064004110200362001191251563199784832900000003300345482127811339
..................................................................................................................CATAACATACACACACATGTAT.........................................................................221193.00193000020000000000000000004003010000000000000000000006545272232158300010014121900012200121000000000000000000000000000000000101000000100000000000001000001010000012000010002001000000000000000000420
.............................................................................AGTTGTGTGTGCATGTTCATG...............................................................................................................2116138.692219221031731002000000000001202301730012420000000000001042461134613018426531829181612141661140636941000000001000000000020060000000000027109180004300000010021713020814928120000360000000100000528481320324900000005112234361593814321
.............................................................................AGTTGTGTGTGCATGTTCATGTCA............................................................................................................2415130.401956011020111001000000000006211012300021100000000000029195283449518559909680784757555220014678125119477000000000000000000001700000000110210230000000000000010005234933000500131010014100020311721160000000000000001191608411
.................................................................................................................ACATAACATACACACACATGTA..........................................................................221102.0010201000000100100000000000200001000000000000000000000200010002200350109131900000110142000000000000000000000000000000000000000000000000000000000010003110000000000040010111000000000000100101013
................................................................................................................TACATAACATACACACACATGT...........................................................................22174.007400001000000000000000000200000000000000000000000000000000004100110004854000220000000000000000010000000000000000000000000000000000000020003020006000000001000061200201000000000000002030700
.............................................................................AGTTGTGTGTGCATGTTCAT................................................................................................................201652.6984331011071100000000000000150141112000010047002210000130111002819127264212113120013171070001000000000000001000000000000000121041600001000000010028141102276700056010000045200023113251538000000000000110198119511
.............................................................................AGTTGTGTGTGCATGTTCATGTCTT...........................................................................................................251547.07706031040021000000000000000010011000000100000000000000400000106118237768101010156109000100000000000000000030000000000012501000100000001000220207524000900333300000000025222011303000000000000010157162310
............................................................................TAGTTGTGTGTGCATGTTCATGT..............................................................................................................231538.005700300710110000000000000051022214002221000000000000112010202330153637181012317421146254726200100000000000000010160000000000011120400000000000000015050951600061050100111000377012158000000011010000040101800
.................................................................................................................ACATAACATACACACACATGT...........................................................................21337.67113000000100000000000000005111011100000000000000000001101000013010001035640043210210001010000000000000000000000000000200000000000000000000010260005100000000000001011116000000002000201061901
.............................................................................AGTTGTGTGTGCATGTTCA.................................................................................................................191623.133700000014100000000000000020110000000000401100000020000000000010131934230100000831400000000000000000000000000001000000252700011000011000062073364200008000000000000019100111100000001000000005786312
.............................................................................AGTTGTGTGTGCATGTTCATGTT.............................................................................................................231522.0033000001023000000000000000100000100010000000000100000220013002306991530101104463100000000000000001000020000000000001537000000000001100320304713350001000111000100008562120300000002001000004493200
.............................................................................AGTTGTGTGTGCATGTTCATGTA.............................................................................................................231817.1130800002010000000000000000000000100010100000000000000020024110325105147294510012122311100000100000000020000040000000000000113000000000000000430401981300020030000000000114106002000000000000000139121741
.............................................................................AGTTGTGTGTGCATGTTCATGA..............................................................................................................221815.8328500003050000000000000000201100000000000000000000000101101000216532231320005235000000000000000000000000000000000100223000010000000200210024215330006000000000000041001143000000000000001037144330
...................................................................................................................ATAACATACACACACATGTAT.........................................................................21215.003000000000000000000000000300000000000100000000000000011013021101010005430000001000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..................................................................................................................CATAACATACACACACATGTA..........................................................................21114.001400000000000000000000000000000110000000000000000000000024000000001000220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001
.............................................................................AGTTGTGTGTGCATGTTCATGTCG............................................................................................................241513.4720200000000000000000000000100000000000000000000000001001100101015051218142106000188141700000000000000000000000000000000000010000000000000000010000303000200121000000000000133170000000000000000166501
.............................................................................AGTTGTGTGTGCATGTTC..................................................................................................................181611.631860000000000000000000000030030010000000100000000000010000000021181017102010000615550000000000000000000000000000000000000000000000000000000002016140006000000000000020154441400000000100000001621101
.............................................................................AGTTGTGTGTGCATGTTCATGTCTA...........................................................................................................251511.131670000100000000000000000000000000000000000000000000002000000101934112010000127111000000000000000000000001000000000000000100000000000000000000102000100660100000000520010000000000000000000111800
..................................................................................................................CATAACATACACACACATGT...........................................................................2038.672600000000000000000000000101100000000210000000000000000000000000000000000004150000000000000000000000000000000000000000000000000000000000000120000000000000000000001100000000000000000030200
.............................................................................AGTTGTGTGTGCATGTTCATGTAA............................................................................................................24187.001260000000030000000000000000000000000010000000000000010101001010167211300000484310000000000000000000001000000000000000100000000000000000010439000000210000000000100000100000000120000000174811
.................................................................................................................ACATAACATACACACACATGTATT........................................................................2417.00700000000000000000000000000000000000000000000000000000011000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000020000
............................................................................TAGTTGTGTGTGCATGTTCATGTC.............................................................................................................24156.5398010011000001000000000001000000000000000000000000000220010000036553114101036550000000000000000000000000000000000003020000000000000000101000100000050000000000110001119000000001000000000200
.................................................................................................................ACATAACATACACACACATG............................................................................2045.752300000000000000000000000101010000000000000000000000000000000000001106530000000000000000000000000000000000000000000000000000000010000000000000000000000000000010000010000000000000000010000
.............................................................................AGTTGTGTGTGCATGTTCATGTCTAT..........................................................................................................26155.0075000010000000000000000000000000000000000000000000000000000102100002000000051110000000000000000000000000000000000000010000000000000000000031100010046100000000021000000000000000000000030000
............................................................................TAGTTGTGTGTGCATGTTCATG...............................................................................................................22164.947900000000200000000000000000000010000200000000001000000000000009482102210001822100000000000000000000010000000000003131000000000000000110312110001000000000000010000012000000021010000011000
.............................................................................AGTTGTGTGTGCATGTTCATGTCTAA..........................................................................................................26154.6069000000000000000000000000000000000000000000000000000002010010000000100000081310000000000000000000000400000000000000000000000000000000000001000000027000000000021001000000000000000000170700
.............................................................................AGTTGTGTGTGCATGTTCATGTCAT...........................................................................................................25174.1270000000000000000000000000000001000000000000000000000100000010122001102500030320000000000000000000000100000000000000000000000000000000000010300000026000000000001000000000000000000000060700
.................................................................................................................ACATAACATACACACACATGTATA........................................................................2414.00400000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000001000000000000000000000
....................................................................................................................TAACATACACACACATGTAT.........................................................................2024.00800001000000000000000000000100000000000000000000000130020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................TAGTTGTGTGTGCATGTTCATGTCT............................................................................................................25153.9359000000000000000000000000000000000000100000000000000100000001001000000000024000000000000000000000000100000000000000000000000000000000000020100000026000000000030000202000000000000001051500
.............................................................................AGTTGTGTGTGCATGTTCATGTCC............................................................................................................24153.805700000000000000000000000100000000000000000000000000001001000103300100010008242000000000000000000000010000000000000000000000000000000000002010001007000001000010013020000000000000000062100
.............................................................................AGTTGTGTGTGCATGT....................................................................................................................16203.4068000000110000000000000000000000000000000000000000000000000000006600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................ACATAACATACACACACATGTAA.........................................................................2333.331000000000000100000000000000100000000000000000000000000000000000002002110000000001000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................TACATAACATACACACACATGTAT.........................................................................2413.00300000000000000000000000000000000000000000000000000000000000000000002100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................CATAACATACACACACATGTATT........................................................................2313.00300000000000000000000000000000000000000000000000000000011000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................AGTTGTGTGTGCATGTTCAA................................................................................................................20162.7544000000100000000000000000010100000000000000000000000000101001020000000000000000000000000000000000000000000000000000000000000000000000000094400000000000000000200001000000000000000000121210
..............................................................................GTTGTGTGTGCATGTTCATGTCT............................................................................................................23152.273400000000000001000000000000000000000000000000000000000100000002102970210000101010000000000000000000000000000000000000000000000000000000000000001001000000000010000000000000000000000020000
............................................................................TAGTTGTGTGTGCATGTTCAT................................................................................................................21162.193500000000000000000000000101001000000000000000000000000001001300430000100001001000100000000000000000000000000000000000000000000000000300101040000000000000000000000000000000000000000060100
..................................................................................................................CATAACATACACACACATGTAG.........................................................................2212.00200000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
................................................................................................................TACATAACATACACACACATGA...........................................................................2212.00200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000010000
.............................................................................AGTTGTGTGTGCATGTTCATGTTA............................................................................................................24161.943100000000000000000000000000000000000000000000000000000000010000310000000000010000000000000000000000000000000000000000000000000000000110003020000004000000000000000000000000000000000091400
.................................................................................................................ACATAACATACACACAC...............................................................................17201.8537000020000000000000000000000000000000000000100000000000000000001303120410000000000000000000000000000000000000000000000000000000000000000000000000000000000000005020300000000000000000000000
.............................................................................AGTTGTGTGTGCATGTTCATT...............................................................................................................21171.763000000000000000000000000000000000000000000000000000000010000000100100100000100000000000000000000000000000000000000000000000000010000200103270000000000000000020000100000000010000000012200
................................................................................TGTGTGTGCATGTTCATGTCT............................................................................................................21161.752800000000000000000000000000000000000000000000000000000000000000021000000001368000000000000000000000000000000000000000000000000000000000000010001000000001000000000001000000000000000030000
.............................................................................AGTTGTGTGTGCATGTTCATGTCTTA..........................................................................................................26151.732600000000000000000000000000000000000000000000000000000000000000000000010003001000000000000000000000000000000000000000000000000000100000000110000007000000000011000200000000000000000042100
...................................................................................................................ATAACATACACACACATGTATT........................................................................2221.50300000000000000000000000000000000000000000000000000001011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TGTGTGTGCATGTTCATGTC.............................................................................................................20171.472500000000000000000000000000000000000000000000000000210101001100020000000004821000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...................................................................................GTGTGCATGTTCATGTCT............................................................................................................18171.472500000000000000000000000000000000000000000000000000020023000202000000000003461000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................AGTTGTGTGTGCATGTTCATGTCTTAT.........................................................................................................27151.4722000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000000300010011000000000000000000000000000000000021200
.........................................................ATGTATGTGCATGTGTGTAT....................................................................................................................................20201.4028000000000000000000000000000000000000000000000000000000100000000240000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000
............................................................................TAGTTGTGTGTGCATGTTCA.................................................................................................................20161.382200000000000000000000000100000010000000000000000000000000000002320000000003000000000000000000000000000000000000000110000000000000000000004200001000000000000000000000000000000000000010000
........................................................................................................................................AAACGCAAGCACACATACACAGACACAGGAATGGCATTCGCCAATCCCTTTG.....................52111.3615000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001500000000000000
...................................................................................................................ATAACATACACACACATGT...........................................................................1941.25500000000000000000000000000000000000000000000000000000031000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................TGTGCATGTGTGTATAGTTGTGT............................................................................................................................23201.202400002000000000000000000100000000000000000000000000000002000001000101130000200000000000000000000000000000000000000100000000000000000000001000003001000000000000000000000000000000000040000
.................................................................................................................ACATAACATACACACACA..............................................................................18201.102200001000000000000000000000000100000000000000000000000000000000200002000000102200000000000000000000000000000000000200000000000000000010000140000000000000000010000002000000000000000000000
................................................................................................................TACATAACATACACACACATG............................................................................2111.00100000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................TACATAACATACACACACATGTA..........................................................................2311.00100001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................AGTTGTGTGTGCATGTTCATGTCGT...........................................................................................................25151.001500000000000000000000000100000000000000000000000000000000000000001100120000020000000000000000000000000000000000000000000000000000000000001010000002000000000000000200000000000000000010000
...............................................................................................................ATACATAACATACACACACATGTAT.........................................................................2511.00100000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................ACATAACATACACACACATGTATG........................................................................2411.00100000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................GTGTGTGCATGTTCATGTC.............................................................................................................19181.001800003000000000000000000000000000000000000000000000000000000000000020000003333000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
.............................................................................AGTTGTGTGTGCATGTTCATA...............................................................................................................21180.941700000000000000000000000100000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000001030000000000000000030000201000000000000000000500
............................................................................TAGTTGTGTGTGCATGTT...................................................................................................................18180.941700000000000000000000000000000000000000000000000000000000000000000000000003524000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000
.............................................................................AGTTGTGTGTGCATGTTCATGTCAG...........................................................................................................25160.941500000000000000000000000000000000000000000000000000000000000000100012310003101000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000010000
..............................................................................GTTGTGTGTGCATGTTCATGTC.............................................................................................................22150.931400000000000001000000000000000000000000000000000000000100000001212131000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.............................................................................AGTTGTGTGTGCATGTTCATGAT.............................................................................................................23190.891700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007020000000000000000000000000000000000000000031400
..............................................................TGTGCATGTGTGTATAGTTGTGTG...........................................................................................................................24200.801600000000000000000000000000000011000000000000000000010001000000010000000004000000000000000000000000000000000000000000000000000000000000000000000005000000000020000000000000000000000000000
.............................................................................AGTTGTGTGTGCATGTTCATGTAAT...........................................................................................................25200.801600000000000000000000000000000000000000000000000000010000000001000000000102102000000000000000000000000000000000000000000000000000000000001000000001000000000000000000000000000000000060000
...............................................................................TTGTGTGTGCATGTTCATGTCT............................................................................................................22150.801200000000000000000000000000000000000000000000000001220000002110011010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................TGTGTGCATGTTCATGTCT............................................................................................................19170.761300000000000000000000000000000000000000000000000000000001000000010000000001441000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
.............................................................................AGTTGTGTGTGCATGTTCATGTG.............................................................................................................23200.751500000000000000000000000000000000000000000000000000000000000001010010000001221000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000020200
..............................................................................GTTGTGTGTGCATGTTCATGT..............................................................................................................21150.731100000000000001000000000100000000000000000000000000000000000001001300000000001000000000000000000000000000000000000010000000000000000000000000001000000000000000000100000000000000000000000
.............................................................................AGTTGTGTGTGCATGTTCATGTCTAG..........................................................................................................26150.731100000000000000000000000000000000000000000000000000010000000000000000000000010000000000000000000000020000000000000000000000000000000000000000000006100000000000000000000000000000000000000
.............................................................................AGTTGTGTGTGCATGTTCATGTCTAAT.........................................................................................................27150.671000000000000000000000000100000000000000000000000000000001001100000000000000000000000000000000000000000000000000000000000000000000000000000010000002000000000000000000000000000000000030000
............................................................................TAGTTGTGTGTGCATGTTCATGTA.............................................................................................................24170.651100001000000000000000000000000000000000000000000000000000000000000201010001101000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000020000
.............................................................................AGTTGTGTGTGCATGTTCATGTCTGA..........................................................................................................26150.60900000000000000000000000000000000000000000000000000000000000000000010000002000000000000000000000000000000000000000000000000000000000000000000000002000000000010010100000000000000000010000
............................................................................TAGTTGTGTGTGCATGTTCATGTCA............................................................................................................25150.60900000000000000000000000000000000000000000000000000000000000000100000000000210000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000011000
........................................................................................................................................AAACGCAAGCACACATACACAGA..................................................23140.57800000000000000000000000000000000000000000000000000000000000001430000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................AGTTGTGTGTGCATGTTCATGG..............................................................................................................22160.56900000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000001010000000000000000000000001000000000000000041000
.............................................................................AGTTGTGTGTGCATGTTCATGTGA............................................................................................................24200.551100000000000000000000000000000000000000000000000000000000000000010010000001101000000000000000000000000000000000000000000000000000000000001000000001000000000000000001000000000000000002100
.............................................................................AGTTGTGTGTGCATGTTCAAA...............................................................................................................21200.551100000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000001000000000000000000001010000000000000000000000100000000000000000030200
.............................................................................AGTTGTGTGTGCATGTTCATGTCTATT.........................................................................................................27150.53800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000005000000000010000000000000000000000000000
............................................................................TAGTTGTGTGTGCATGTTCATGTT.............................................................................................................24150.53800000000000000000000000000000000000000000000000000000000000001100000000000010000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000030000
...................................................................................................................ATAACATACACACACATGTA..........................................................................2020.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
................................................................................................................TACATAACATACACACACATGTATTT.......................................................................2620.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
cavPor3
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dipOrd1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
hetGal2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
ochPri2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
oryCun2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM1528820
Adult_testes		GSM1528821
Adult_testes_Mili_IP
No Reads
rn5
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM1528817
Adult_testes		GSM1528818
Adult_testes_Mili_IP		GSM1528819
10dpp_testes
No Reads
speTri2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads

Generated: 04/30/2015 at 09:23 PM