ID:

mmu-mir-664

 Coordinate:

chr1:185242975-185243043 +

 Confidence:

Known

 Type:

Unknown

 [View on miRBase]
[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-27.8 -27.6 -27.6

Sense Strand Reads

AGCCCAGGGTCCCCTCCCTGCTCTGCTAATTAGACTTTGGAACATTGAAGCTGGCTGGGGAAAATGACTGGATAGAAAACATTATTCTATTCATTTACTCCCCAGCCTACACATGAAAGCAATAACAGCACAATAACTTTATCTACATCTTTACATAAAGGTCTTAATT
***********************************..............((((((((((((...(((.(((((((((.......))))))))).))).)))))))))..........))).....******************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553583
cerebellum		 SRR1509747
oocyte		 SRR553582
brain		 SRR1509749
zygote		 SRR042463
spleen		 SRR553602
sertoli_cells		 SRR345204
brain		 SRR345205
brain		 SRR345199
brain		 SRR065059
pancreas		 SRR345203
brain		 SRR345202
brain		 SRR206942
brain		 SRR206941
brain		 SRR206940
brain		 SRR042471
spleen		 SRR065058
pancreas		 SRR042477
brain		 SRR038744
brain		 SRR345207
brain		 SRR553585
kidney		 SRR042469
lymph		 SRR042481
pancreas		 SRR390298
fibroblast		 SRR042457
bone marrow		 SRR042456
bone marrow		 SRR248527
spermatogonia		 SRR553584
heart		 SRR042461
bone marrow		 SRR042462
bone marrow		 SRR206939
brain		 SRR038741
brain		 SRR345201
brain		 SRR042459
blood		 SRR248526
Thy1-_somatic_testes_cells		 SRR390297
fibroblast		 SRR042473
lymph		 SRR039610
brain		 SRR042470
lymph		 GSM510444
brain		 SRR345197
brain		 SRR042466
spleen		 SRR042468
lymph		 SRR248525
Thy1-_somatic_testes_cells		 SRR042465
spleen		 SRR042475
fibroblast		 SRR042480
kidney		 SRR042486
ovary		 SRR042455
blood		 SRR1509750
spermatogonia		 SRR042484
salivary gland		 SRR391852
embryo		 SRR391853
embryo		 SRR042478
lung		 SRR042472
lymph		 SRR042487
spleen		 SRR391851
embryo		 SRR059769
spleen		 SRR1509751
foetal_primordial_germ_cells		 SRR042467
spleen		 SRR039186
fibroblast		 SRR116846
epididymis		 SRR248524
Thy1+_spermatogonia		 SRR065047
liver		 SRR032477
uterus		 SRR039185
fibroblast		 SRR037905
brain		 SRR039154
muscle		 SRR065046
liver		 SRR042479
liver		 SRR039183
fibroblast		 SRR037906
brain		 SRR065049
liver		 SRR037924
embryo		 SRR042460
blood		 SRR039184
fibroblast		 SRR037925
embryo		 SRR059766
thymus		 SRR065048
liver		 SRR065053
jejunum		 SRR042483
muscle		 SRR345198
brain		 SRR065050
liver		 SRR065045
liver		 SRR345206
brain		 SRR073954
blood		 SRR248523
Thy1+_spermatogonia		 SRR032476
uterus		 SRR037929
embryo		 SRR039152
muscle		 SRR042476
heart		 SRR059770
spleen		 SRR077864
liver		 SRR065054
jejunum		 SRR391848
embryo		 SRR059765
thymus		 SRR037928
embryo		 SRR065055
jejunum		 SRR059768
spleen		 SRR059767
thymus		 SRR039153
muscle		 SRR065052
jejunum		 SRR040488
liver		 SRR042464
thymus		 SRR069809
Type_A_spermatogonia		 SRR077865
liver		 GSM475281
testes		 SRR391846
embryo		 SRR1509748
spermatozoa		 SRR095853
heart		 SRR553586
testes		 SRR095855BC2
heart		 SRR095855BC7
heart		 SRR073955
blood		 SRR077866
liver		 SRR391845
embryo		 SRR095855BC1
heart		 SRR037923
embryo		 SRR060845
brain		 SRR345196
brain		 SRR391849
embryo		 SRR037907
brain		 SRR059771
spleen		 SRR391850
embryo		 SRR095855BC8
heart		 SRR391847
embryo		 SRR037926
embryo		 SRR095855BC3
heart		 SRR065056
jejunum		 SRR553604
spermatocytes		 SRR069834
blood		 SRR037927
embryo		 SRR345200
brain		 SRR037904
brain		 SRR1647950
Dicer_cKO_leptotene_zygotene_spermatocytes		 SRR553603
spermatids		 SRR042485
testes		 SRR095855BC5
heart		 SRR069810
pachytene_spermatocytes		 SRR1647952
Dgcr8_cKO_pachytene_spermatocytes		 SRR037930
embryo		 GSM509279
testes		 SRR042482
skin		 SRR1647954
Dicer_cKO_pachytene_spermatocytes		 SRR525238
Blood		 SRR095855BC10
heart		 SRR069811
round_spermatid		 SRR095855BC6
heart		 SRR059772
spleen		 SRR525237
Blood		 SRR037897
ovary		 SRR037921
embryo		 SRR1647948
Dgcr8_cKO_leptotene_zygotene_spermatocytes		 SRR037901
testes		 GSM509275
testes		 GSM566420
fibroblast		 SRR037920
embryo		 SRR1647949
Dicer_WT_leptotene_zygotene_spermatocytes		 SRR037902
testes		 SRR014231
testes		 SRR037898
ovary		 SRR037903
testes		 SRR1647947
Dgcr8_WT_leptotene_zygotene_spermatocytes		 SRR1647951
Dgcr8_WT_pachytene_spermatocytes		 SRR1647953
Dicer_WT_pachytene_spermatocytes		 SRR037922
embryo		 SRR051939
testes		 SRR051940
testes		 GSM317181
brain		 GSM317182
brain		 GSM566419
fibroblast		 SRR037899
ovary		 SRR037900
testes		 SRR095855BC4
heart		 SRR095855BC9
heart
..................................................CTGGCTGGGGAAAATGACTGGA................................................................................................. 22 0 1 32343.00 32343 3331 6 2775 0 2610 2702 2196 1055 13 1186 719 567 98 128 200 415 722 629 107 579 528 434 652 926 500 577 470 444 485 398 75 64 37 143 277 343 141 65 188 21 24 180 174 204 124 274 204 207 139 1 144 220 212 154 108 145 203 57 0 138 116 44 110 91 93 96 10 77 86 82 71 9 75 80 32 50 86 70 68 46 47 22 56 66 31 16 55 43 42 59 49 14 37 46 27 29 41 22 26 21 20 19 10 24 25 23 5 23 0 0 27 14 9 4 13 20 9 26 22 6 12 2 0 8 14 18 17 6 5 11 4 9 0 2 5 7 7 4 5 0 9 1 6 2 6 4 5 1 0 0 2 2 0 3 1 0 1 0 1 0 2 0 0 1 1 0 0 1 0 0 0 0 0 0 0
..................................................CTGGCTGGGGAAAATGACTGGAATC.............................................................................................. 25 3 1 6029.00 6029 0 3190 0 2681 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 97 0 0 0 0 0 0 0 0 55 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGGCTGGGGAAAATGACTGG.................................................................................................. 21 0 1 5845.00 5845 708 0 573 0 225 413 324 162 1 78 140 222 28 41 59 224 47 47 16 91 77 247 34 0 48 42 86 78 22 22 25 9 165 96 87 27 89 11 116 7 145 77 79 52 92 15 9 13 101 0 56 27 11 10 57 58 14 9 0 21 23 7 14 2 7 11 7 5 2 2 6 1 6 2 19 13 6 6 3 3 23 4 4 3 18 1 10 4 4 2 1 3 1 0 1 1 10 1 2 3 4 0 1 14 2 1 0 1 0 0 2 3 3 2 3 0 1 0 1 1 0 1 0 4 2 0 1 2 0 0 0 3 0 1 1 3 0 1 1 0 0 0 2 1 1 0 1 0 1 2 0 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGGCTGGGGAAAATGACTGGA................................................................................................. 21 0 1 4105.00 4105 450 0 307 0 316 193 363 154 1 135 135 335 19 17 20 57 85 32 24 108 70 36 39 0 95 29 49 18 21 23 7 14 141 22 25 26 11 9 20 3 103 6 13 27 21 14 21 11 11 0 17 19 33 10 8 13 13 18 0 11 17 15 8 6 14 5 2 10 1 1 5 1 5 4 4 4 0 9 1 17 3 4 4 1 14 4 6 9 11 6 1 2 3 5 7 7 6 10 2 4 7 3 3 1 2 3 1 5 0 0 3 1 1 2 5 2 2 2 1 9 2 0 14 3 0 2 0 2 0 1 0 2 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 1 3 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................GCTGGCTGGGGAAAATGACTGG.................................................................................................. 22 0 1 3483.00 3483 883 0 504 0 47 127 229 113 1 75 197 45 28 27 38 87 55 59 14 55 93 31 15 0 39 10 40 67 15 22 27 5 1 34 44 8 36 6 26 3 4 19 13 23 32 9 12 17 11 0 12 3 3 9 20 8 5 11 0 5 6 3 9 5 6 3 2 2 4 1 5 7 6 2 11 0 1 5 4 5 5 2 6 2 4 3 4 2 0 0 3 1 1 0 2 0 0 8 2 0 2 5 2 1 0 1 0 0 0 0 1 1 1 1 1 1 1 0 0 0 0 0 0 2 0 1 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 0
.................................................GCTGGCTGGGGAAAATGACTGGA................................................................................................. 23 0 1 2753.00 2753 646 0 317 0 152 65 55 54 0 102 122 0 10 16 27 60 62 91 12 10 60 50 36 0 43 40 19 40 38 18 12 11 0 11 43 6 28 6 13 6 0 14 12 29 9 10 16 19 10 0 11 8 14 19 11 6 2 8 0 6 8 12 3 15 11 1 6 2 14 8 3 2 11 5 3 4 6 6 8 12 6 2 9 3 0 1 1 8 3 2 6 7 3 11 4 4 0 9 1 2 1 11 0 1 4 1 0 2 0 0 4 0 0 2 0 1 0 1 1 1 1 0 0 2 0 0 1 0 4 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 1 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTAC........................................................... 23 0 1 2751.00 2751 171 0 76 0 1 3 2 11 0 6 2 5 520 440 281 15 14 25 324 3 16 4 2 0 4 4 22 11 2 1 174 146 0 15 1 0 3 124 6 88 0 8 1 3 1 0 2 3 0 0 1 1 1 3 1 0 2 0 0 0 0 11 1 2 1 2 21 6 2 0 1 26 2 0 6 3 0 0 2 4 2 0 1 0 2 11 1 3 0 0 0 1 1 1 4 0 1 1 0 0 1 1 4 1 1 0 5 2 0 0 0 8 8 4 1 1 4 0 0 4 1 6 0 2 2 0 0 1 2 1 0 0 0 5 2 1 0 4 0 3 0 1 0 1 0 1 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1
..................................................CTGGCTGGGGAAAATGACT.................................................................................................... 19 0 1 1846.00 1846 31 0 18 0 0 3 10 6 1684 0 3 5 6 9 4 0 0 0 1 1 0 5 0 0 0 0 5 0 0 0 0 2 10 1 3 0 0 2 0 0 2 1 0 1 0 0 0 0 0 0 0 0 0 0 2 2 1 1 0 0 1 0 1 0 0 2 0 0 0 0 1 0 0 0 0 2 0 1 0 0 0 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTACA.......................................................... 24 0 1 1248.00 1248 147 0 39 0 2 6 0 10 0 4 3 2 191 138 157 6 11 10 113 1 6 0 2 0 1 0 7 4 1 3 94 61 0 11 0 16 4 37 2 35 0 5 2 0 1 4 2 0 3 4 0 1 5 2 0 0 0 0 0 0 0 11 0 0 0 0 22 4 0 0 0 5 0 0 1 1 0 0 2 0 3 0 0 4 0 4 0 2 2 0 0 1 5 0 2 2 1 0 0 0 0 0 0 0 0 0 4 0 0 0 0 1 2 2 1 3 0 0 0 0 0 2 0 0 0 1 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................TATTCATTTACTCCCCAGCCT............................................................. 21 0 1 1138.00 1138 25 0 26 0 13 3 9 0 3 13 3 6 162 144 104 21 20 5 85 1 2 19 4 0 6 2 4 2 3 1 47 45 0 12 2 0 15 50 2 34 0 4 1 1 4 0 0 2 2 0 1 1 0 0 3 1 0 67 0 2 0 15 1 0 0 7 10 0 0 0 8 11 0 0 0 12 0 2 1 1 2 5 0 1 2 6 1 3 0 0 0 12 2 0 0 11 0 0 5 3 0 0 5 1 1 0 0 0 0 0 0 1 3 3 0 0 0 0 0 1 0 2 0 0 1 0 0 1 0 0 0 0 1 1 1 0 0 1 0 3 0 0 0 4 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTAT........................................................... 23 1 1 1068.00 1068 20 0 24 0 1 3 3 3 0 15 2 1 60 71 46 62 27 10 85 4 3 10 3 0 3 2 33 5 1 5 30 58 0 66 5 22 37 40 5 27 3 19 13 2 21 1 2 1 1 0 10 2 3 5 20 2 2 10 0 0 0 9 0 1 0 4 3 2 3 0 1 8 4 0 9 2 0 1 5 3 4 0 1 4 0 7 0 3 3 0 2 4 2 1 2 2 1 0 2 1 1 1 7 1 5 2 5 0 0 0 0 3 4 4 1 2 6 0 0 0 0 1 0 1 2 0 0 1 2 0 3 0 0 0 2 0 0 0 1 1 1 0 1 1 0 0 0 2 0 2 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGGCTGGGGAAAATGACTGG.................................................................................................. 20 0 1 962.00 962 103 0 100 0 32 42 57 24 8 17 18 61 7 6 6 35 3 8 9 9 7 18 3 0 4 3 13 1 1 1 5 1 81 21 7 3 6 8 17 0 48 8 9 8 5 2 2 1 14 0 9 4 3 0 7 6 2 2 0 2 2 2 4 0 0 1 1 1 0 0 3 0 0 1 4 3 0 1 0 0 1 17 1 0 8 1 0 1 0 0 0 0 0 2 2 0 0 2 1 1 1 1 1 0 0 0 1 1 0 0 2 2 1 1 0 0 1 0 0 0 1 0 3 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTA............................................................ 22 0 1 958.00 958 47 0 13 0 14 3 5 6 0 3 3 4 81 100 73 29 11 10 93 2 4 11 1 0 0 1 5 2 1 3 31 46 0 18 0 35 21 40 5 36 0 4 7 3 7 1 1 4 2 0 3 1 2 0 4 2 1 12 0 0 3 15 0 1 1 8 10 2 1 0 13 4 1 1 1 8 0 0 1 2 2 2 0 0 3 5 0 0 3 0 0 8 4 0 2 3 0 0 3 6 0 2 5 1 1 1 7 0 0 0 0 2 0 1 3 1 1 0 0 0 1 4 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0
..................................................CTGGCTGGGGAAAATGACTGGATC............................................................................................... 24 1 1 867.00 867 0 408 0 402 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 45 0 0 0 0 0 0 0 0 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTACAATC....................................................... 27 3 1 766.00 766 0 450 0 281 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 0 0 0 0 0 0 0 0 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGGCTGGGGAAAATGACTGGAATA.............................................................................................. 25 3 2 764.00 1528 0 819 0 660 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26 0 0 0 0 0 0 0 0 18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGGCTGGGGAAAATGACTGGAA................................................................................................ 23 1 1 716.00 716 72 10 35 11 49 14 29 32 0 50 39 4 2 2 1 16 28 28 0 9 9 15 28 0 16 16 1 6 14 11 0 1 4 4 5 0 4 0 4 0 2 6 4 1 4 7 13 9 3 0 4 5 0 14 3 2 1 0 0 3 3 0 0 5 2 0 0 3 6 4 0 0 1 0 1 1 0 2 1 3 0 0 3 5 0 0 1 4 1 0 1 0 1 1 0 1 0 1 1 1 0 0 0 1 2 2 0 2 0 0 0 0 0 1 1 0 0 0 1 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGGCTGGGGAAAATGACTGGAT................................................................................................ 23 0 1 686.00 686 71 4 40 2 50 72 19 13 0 16 53 0 3 7 5 6 11 26 2 3 18 5 8 0 16 11 13 7 5 8 2 1 0 8 17 5 9 3 3 0 0 4 5 7 4 7 4 7 4 0 4 5 1 5 6 0 2 1 0 4 1 0 2 1 1 1 0 2 0 4 2 0 2 2 2 0 2 2 3 3 1 0 3 5 0 3 4 0 1 0 3 2 0 2 1 0 0 1 1 0 0 1 1 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 2 1 0 0 0 1 0 0 0 1 0 0 0 0 1 0 1 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTACATC........................................................ 26 2 1 607.00 607 0 296 0 248 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38 0 0 0 0 0 0 0 0 20 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTAA........................................................... 23 1 1 499.00 499 18 0 9 0 8 1 2 1 0 5 5 0 24 29 36 34 14 4 39 1 0 7 2 0 2 10 4 1 4 10 20 13 0 13 0 5 16 16 6 28 0 1 0 0 2 3 1 2 0 0 3 0 0 1 1 2 0 4 0 0 2 4 0 0 0 2 6 1 0 0 1 6 0 0 4 10 0 1 1 3 4 0 0 1 0 5 0 1 4 0 0 1 2 1 3 1 0 2 0 3 1 0 4 0 1 0 0 2 0 0 0 0 1 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..................................................CTGGCTGGGGAAAATGACTTGA................................................................................................. 22 1 1 477.00 477 24 0 26 0 81 5 1 3 0 0 2 1 0 0 0 0 2 47 0 1 2 20 47 0 8 31 1 1 23 38 0 0 0 0 0 0 5 0 0 0 1 1 10 0 1 2 27 13 8 0 0 0 0 12 0 1 0 0 0 0 0 0 0 0 1 0 0 0 2 14 0 0 1 1 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................GCTGGCTGGGGAAAATGACTGGAT................................................................................................ 24 0 1 463.00 463 149 0 62 0 14 12 0 5 0 16 29 0 1 3 6 5 5 19 1 0 14 1 5 0 9 6 3 8 6 2 2 2 0 2 11 0 2 0 1 0 0 1 2 3 0 0 4 6 0 0 0 1 1 2 1 0 1 2 0 0 1 0 0 4 1 0 1 0 2 0 1 1 0 0 3 0 0 0 0 0 0 0 0 2 0 2 0 2 0 0 0 1 0 2 0 0 0 0 0 1 1 3 2 0 0 1 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGGCTGGGGAAAATGACTGGT................................................................................................. 22 1 1 318.00 318 10 0 18 0 10 11 50 38 0 1 28 15 1 0 0 2 1 6 1 18 2 1 7 0 2 1 7 5 2 1 1 0 0 3 3 4 2 0 0 0 0 7 2 1 4 9 1 4 2 0 1 5 1 3 1 3 1 3 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGGCTGGGGAAAATGACTG................................................................................................... 20 0 1 300.00 300 45 0 20 0 1 10 7 2 4 2 3 7 2 3 2 21 3 0 1 8 4 26 0 0 0 0 1 1 0 0 1 0 22 6 2 0 10 0 10 0 12 2 5 0 0 2 0 0 8 0 7 0 2 0 2 1 1 1 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 1 4 0 0 0 0 1 13 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................GCTGGCTGGGGAAAATGACTG................................................................................................... 21 0 1 280.00 280 101 0 43 0 2 1 19 2 0 0 6 3 1 4 3 10 2 2 2 4 7 3 0 0 1 0 2 4 0 2 4 1 9 2 0 0 2 0 2 0 10 1 2 2 2 0 0 0 1 0 3 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 1 3 0 0 0 1 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGGCTGGGGAAAATGACTGT.................................................................................................. 21 1 1 267.00 267 52 0 54 0 3 1 22 5 0 0 6 11 4 7 5 1 0 4 1 9 4 5 0 0 3 2 0 8 2 1 2 1 15 2 0 0 6 2 0 0 9 0 6 0 2 0 1 1 2 0 1 0 0 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGGCTGGGGAAAATGACTGTA................................................................................................. 22 1 1 265.00 265 4 0 17 0 9 0 8 5 1 0 0 2 0 0 0 0 0 25 0 3 0 10 34 0 5 17 0 1 29 23 1 0 0 0 0 0 6 0 0 0 0 1 8 0 0 1 6 7 6 0 0 0 0 10 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 7 0 0 4 0 0 0 0 0 4 0 0 1 3 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................GCTGGCTGGGGAAAATGACTGT.................................................................................................. 22 1 1 262.00 262 48 0 54 0 0 1 34 10 0 1 31 15 4 3 2 3 1 5 1 11 1 0 0 0 5 0 2 6 0 0 1 0 1 4 0 0 1 0 0 0 0 0 0 1 1 0 0 1 0 0 1 0 0 1 1 0 0 3 0 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGGCTGGGGAAAATGACTGGAAA............................................................................................... 24 1 1 258.00 258 15 1 7 0 29 4 31 14 0 22 5 5 0 0 0 10 14 14 0 3 4 4 6 0 3 7 2 1 6 9 0 0 0 1 0 0 0 1 2 0 0 5 2 0 0 1 2 2 2 0 1 0 0 4 0 0 0 0 0 1 0 0 0 1 2 0 0 0 1 6 0 0 1 0 0 0 0 0 1 0 0 0 3 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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..................................................GTGGCTGGGGAAAATGACTGGA................................................................................................. 22 1 1 9.00 9 0 0 1 0 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................TATTCATTTACTCCCCAGCCTAGATC........................................................ 26 3 1 9.00 9 0 1 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGGCTGGGGAAAATGACTTGT................................................................................................. 22 2 1 9.00 9 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................ATGGCTGGGGAAAATGACTGG.................................................................................................. 21 1 1 9.00 9 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................GCTGGCTGGGGAAAATGACTGGAG................................................................................................ 24 1 1 9.00 9 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTGGCTGGGGACAATGACTGG.................................................................................................. 21 1 1 9.00 9 0 0 0 0 1 0 1 3 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................GCTGGCTGGGGAAAATGACTGAA................................................................................................. 23 1 1 9.00 9 4 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................GCTGGCTGGGGAAAATGACTGGATT............................................................................................... 25 1 1 9.00 9 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TCGGGTCCCAGGGGAGGGACGAGACGATTAATCTGAAACCTTGTAACTTCGACCGACCCCTTTTACTGACCTATCTTTTGTAATAAGATAAGTAAATGAGGGGTCGGATGTGTACTTTCGTTATTGTCGTGTTATTGAAATAGATGTAGAAATGTATTTCCAGAATTAA
********************************************..............((((((((((((...(((.(((((((((.......))))))))).))).)))))))))..........))).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM361430
brain		 GSM361408
brain		 GSM361395
brain		 GSM361402
brain		 GSM361407
brain		 GSM361415
brain		 GSM361394
brain		 GSM361399
brain		 SRR345201
brain		 SRR553603
spermatids		 GSM361398
brain		 SRR039153
muscle		 SRR345197
brain		 SRR391852
embryo
..................................................GACCGACCCCTTTTACTGACCT................................................................................................. 22 0 1 9.00 9 2 1 2 2 1 1 0 0 0 0 0 0 0 0
..................................................GACCGCCCCCTTTTACTGACCT................................................................................................. 22 1 1 3.00 3 1 0 0 0 1 1 0 0 0 0 0 0 0 0
.......................................................................................ATAAGTAAATGAGGGGTCGGA............................................................. 21 0 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0
.................................................CGACCGACCCCTTTTACTGACCT................................................................................................. 23 0 1 2.00 2 0 0 0 0 0 0 1 1 0 0 0 0 0 0
..................................................GCCCGACCCCTTTTACTGACCT................................................................................................. 22 1 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATAAGTAAATGAGGGGTCGGAT............................................................ 22 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
...................................................ACCGACCCCTTTTACTGACCT................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GACCGACCCCTTTTACTGACCTT................................................................................................ 23 1 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATAAGTAAATGAGGGGTCGGATTT.......................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................CGTGTTATTGAAATAGATGTAGAAATGTAT............ 30 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................ATAAGTAAATGAGGGGTCGGATA........................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GACCGACCCCTTTTACTGACC.................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CACCGACCCCTTTTACTGACCT................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AACCGACCCCTTTTACTGACCTA................................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATAAGTAAATGAGGGGTCGGATGT.......................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CGACCGACCCCTTTTACTGACC.................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATAATTAAATGAGGGGTCGGA............................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATAAGTAAATGAGGGGTCGGATT........................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TGTAATAAGACAAGTAAATG....................................................................... 20 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................GCCCGCCCCCTTTTACTGACCT................................................................................................. 22 2 7 0.57 4 0 0 2 2 0 0 0 0 0 0 0 0 0 0
..................................................GACCGATCCCTTTTACTAACCT................................................................................................. 22 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...........................TTAGTCTGAAGCCTTGTAACGT........................................................................................................................ 22 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................TGTAATAAGATAAGGACATG....................................................................... 20 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
........................................................................................................CGGATGTGTAATTTCGTTTT............................................. 20 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.....................................................................................................AGGCGGATGTGTAATTTCGTT............................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
mm10 chr1:185242925-185243093 + mmu-mir-664 AGCCCAGGGT-CCCCTCCCTGCTCTGCTAATTAGACTTTGGAACATTGAAGCTGGCTGGGGAAAATGACTGGATAGAAAACATTATTCTATTCATTTACTCCCCAGCCTACACATGAAAGCAATAACA-GCACAATA-ACTTTAT-----CTACATCTTTACATAAAGGTCTTAatt
cavPor3 scaffold_13:2477326-2477463 + AGTTCAGGGTACCCTTCCCTGCTCTGGTAATTAAACTTTGGAACACTGA-ACTGGCTAGGGCAAGTGCTTGGATAGAGATTGTC-CTCTATCCATTGG-TCCCCAGCCTACAGC------------------------------C-----CTGTGCCTTCAAGCCAGGGCC-TAATG
dipOrd1 scaffold_13916:18848-18848 + ----C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
hetGal2 Unknown ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ochPri2 Unknown ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
oryCun2 chr16:52865042-52865211 + AGTTCAGGGA--GTTTCCCTGATCTGGTAATTAAACTTTGGAACATTGAAACTGGCTAGGGAAAATCATCGGATAGAAAATGTTATTCTATTCATATA-TCCCCAGCCTACAAGTGAAAA-AACAAAATGTGCAGTAAACTTAATGT-ACGTACATCTTTATGTAAA-ATC-TGATG
rn5 chr13:107866555-107866725 + rno-mir-664-2 AGCCCAGGGT-CTCCTCCCTGCTCTGTTAATTAGACTTTGGAACATTGAAGCTGGCTGGGGAAAATGATTGGATAGAAAACATTATTCTATTCATTTACTCCCCAGCCTACAAATAAAAGCAATCACA-GTACAATCAACTTCATTTTCTGCATATCTTTACGTAAAGGTC-T---T
speTri2 JH393460:2004296-2004462 + AGTTCAGGGT-ATCTTCCCTGTTCTGTTAATTAAACTTTGGAACATGGAAACTGGCTAGGGGAAATGATTGGATAGAAAATGTTATTCTATTCATTTA-TCCCCAGCCTACAAATGGAAG-AACAAAA-ATGCAGTAAATTTTAT-----GTATGTCATTATGTAAAGGTT-TAatt

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
mm10
AGCCCAGGGT-CCCCTCCCTGCTCTGCTAATTAGACTTTGGAACATTGAAGCTGGCTGGGGAAAATGACTGGATAGAAAACATTATTCTATTCATTTACTCCCCAGCCTACACATGAAAGCAATAACA-GCACAATA-ACTTTAT-----CTACATCTTTACATAAAGGTCTTAattSizeHit CountTotal NormTotalSRR042455
blood		SRR042459
blood		SRR042460
blood		SRR069834
blood		SRR073954
blood		SRR073955
blood		SRR525238
Blood		SRR525237
Blood		SRR042456
bone marrow		SRR042457
bone marrow		SRR042461
bone marrow		SRR042462
bone marrow		GSM317181
brain		GSM317182
brain		GSM361394
brain		GSM361395
brain		GSM361398
brain		GSM361399
brain		GSM361402
brain		GSM361407
brain		GSM361408
brain		GSM361415
brain		GSM361430
brain		GSM510444
brain		SRR037904
brain		SRR037905
brain		SRR037906
brain		SRR037907
brain		SRR038741
brain		SRR038744
brain		SRR039610
brain		SRR042477
brain		SRR060845
brain		SRR206939
brain		SRR206940
brain		SRR206941
brain		SRR206942
brain		SRR345196
brain		SRR345197
brain		SRR345198
brain		SRR345199
brain		SRR345200
brain		SRR345201
brain		SRR345202
brain		SRR345203
brain		SRR345204
brain		SRR345205
brain		SRR345206
brain		SRR345207
brain		SRR037919
embryo		SRR037920
embryo		SRR037921
embryo		SRR037922
embryo		SRR037923
embryo		SRR037924
embryo		SRR037925
embryo		SRR037926
embryo		SRR037927
embryo		SRR037928
embryo		SRR037929
embryo		SRR037930
embryo		SRR391845
embryo		SRR391846
embryo		SRR391847
embryo		SRR391848
embryo		SRR391849
embryo		SRR391850
embryo		SRR391851
embryo		SRR391852
embryo		SRR391853
embryo		SRR116846
epididymis		GSM566419
fibroblast		GSM566420
fibroblast		SRR039183
fibroblast		SRR039184
fibroblast		SRR039185
fibroblast		SRR039186
fibroblast		SRR042475
fibroblast		SRR390297
fibroblast		SRR390298
fibroblast		SRR042484
salivary gland		SRR042476
heart		SRR095853
heart		SRR095855BC1
heart		SRR095855BC10
heart		SRR095855BC2
heart		SRR095855BC3
heart		SRR095855BC4
heart		SRR095855BC5
heart		SRR095855BC6
heart		SRR095855BC7
heart		SRR095855BC8
heart		SRR095855BC9
heart		SRR065052
jejunum		SRR065053
jejunum		SRR065054
jejunum		SRR065055
jejunum		SRR065056
jejunum		SRR042480
kidney		SRR040488
liver		SRR042479
liver		SRR065045
liver		SRR065046
liver		SRR065047
liver		SRR065048
liver		SRR065049
liver		SRR065050
liver		SRR077864
liver		SRR077865
liver		SRR077866
liver		SRR042478
lung		SRR042468
lymph		SRR042469
lymph		SRR042470
lymph		SRR042472
lymph		SRR042473
lymph		SRR039152
muscle		SRR039153
muscle		SRR039154
muscle		SRR042483
muscle		SRR014234
ovary		SRR037896
ovary		SRR037897
ovary		SRR037898
ovary		SRR037899
ovary		SRR042486
ovary		SRR042481
pancreas		SRR065058
pancreas		SRR065059
pancreas		SRR042482
skin		SRR042463
spleen		SRR042465
spleen		SRR042466
spleen		SRR042467
spleen		SRR042471
spleen		SRR042487
spleen		SRR059768
spleen		SRR059769
spleen		SRR059770
spleen		SRR059771
spleen		SRR059772
spleen		SRR059773
spleen		GSM475281
testes		GSM509275
testes		GSM509279
testes		SRR014231
testes		SRR014235
testes		SRR014236
testes		SRR028731
testes		SRR037900
testes		SRR037901
testes		SRR037902
testes		SRR037903
testes		SRR042485
testes		SRR051939
testes		SRR051940
testes		SRR069809
Type_A_spermatogonia		SRR069810
pachytene_spermatocytes		SRR069811
round_spermatid		SRR248523
Thy1+_spermatogonia		SRR248524
Thy1+_spermatogonia		SRR248525
Thy1-_somatic_testes_cells		SRR248526
Thy1-_somatic_testes_cells		SRR248527
spermatogonia		SRR363956
testes		SRR363957
testes		SRR363958
testes		SRR363959
testes		SRR363960
testes		SRR363963
testes		SRR363964
testes		SRR553582
brain		SRR553583
cerebellum		SRR553584
heart		SRR553585
kidney		SRR553602
sertoli_cells		SRR553603
spermatids		SRR553604
spermatocytes		SRR553586
testes		SRR042464
thymus		SRR059765
thymus		SRR059766
thymus		SRR059767
thymus		SRR032476
uterus		SRR032477
uterus		SRR1509747
oocyte		SRR1509748
spermatozoa		SRR1509749
zygote		SRR1509750
spermatogonia		SRR1509751
foetal_primordial_germ_cells		SRR1647947
Dgcr8_WT_leptotene_zygotene_spermatocytes		SRR1647948
Dgcr8_cKO_leptotene_zygotene_spermatocytes		SRR1647949
Dicer_WT_leptotene_zygotene_spermatocytes		SRR1647950
Dicer_cKO_leptotene_zygotene_spermatocytes		SRR1647951
Dgcr8_WT_pachytene_spermatocytes		SRR1647952
Dgcr8_cKO_pachytene_spermatocytes		SRR1647953
Dicer_WT_pachytene_spermatocytes		SRR1647954
Dicer_cKO_pachytene_spermatocytes
...................................................CTGGCTGGGGAAAATGACTGGA........................................................................................................22132343.00323431391433241646057750048539800000000000212109264107656292275200128986242213037567719219610553157901202680861794142920231827128203220212440071509611627434392614449094146041914019464622520410826686916875563723131541744341881081415920774700220207652722118662610124180138415145265714000511000003107012555551102042774700000000277533314445282702711272429702143936001000051012
...................................................CTGGCTGGGGAAAATGACTGGAATC.....................................................................................................2516029.00602900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000319062681975500000000
...................................................CTGGCTGGGGAAAATGACTGG.........................................................................................................2115845.00584510196190121242482222000000000007171191611471255941281145410165222140324162189100200261310400101041427117016131123152705610103201032003010912322364113107924711657892452300000133447782225927721224582930100100000000000021110145287860000000573708787741330214163470000000010001
....................................................TGGCTGGGGAAAATGACTGGA........................................................................................................2114105.0041051122404200299521230000000000031210142493217201719910341014133513536315414108000024002611025272313193315005451714260171020120011003175100213111615433510133620811671030010011398513513162161157132182143011100000100000200682725490000000307450187019301317949140000000000000
..................................................GCTGGCTGGGGAAAATGACTGG.........................................................................................................2213483.003483113411031001039152200000000000312705146590273827280421014519722911345500000210000010120253330050369801230101000010055081122124546611191331262036022500000171555750473219587821110100010000000002000049234440000000050488367931271011050260000010000000
..................................................GCTGGCTGGGGAAAATGACTGGA........................................................................................................2312753.0027531011301211404338180000000000060620111269111227161010200001225554010000015610030120412281412003418106011600100000000111211941608314158119310191250131128212600000193662102015291466061870000110000000100040013294319000000031764640606500414628110000000100100
........................................................................................TATTCATTTACTCCCCAGCCTAC..................................................................2312751.002751015601140044210000000000088521266146324124250174281440520400000522112300000000010012041221111001320000100418104182114112240022221101314613016200100321460118015000100050100000000000100113122000000076171111631101000310000000120311
...................................................CTGGCTGGGGAAAATGACT...........................................................................................................1911846.00184601000000000000000000000000002120004964213168401053106010000000000001000001000001221000000000000000000000000000000000005020000000000000000010020100001000000000000000001135000000018310030000010000000000000000
........................................................................................TATTCATTTACTCCCCAGCCTACA.................................................................2411248.0012483111142000113000000000003502252611133710094157138191000000230100100000000012030120001511000100416000000120012000000020040020050122020400430000002114021506000100040100000110000000000070000000391474660000200200004000000000
........................................................................................TATTCATTTACTCCCCAGCCT....................................................................2111138.001138212006300263100000000000341101124585505047104144162105310639021000000000000000000010150181270000100001101131001000050100100200011923150002000012420130134422115671200000000000000000100111240000000262522300011123300000011010304
........................................................................................TATTCATTTACTCCCCAGCCTAT..................................................................2311068.0010681669374022315000000000002703815885401003046716003000012330400000000013120020122390112401220102060310024201310227043154122151310520370124000001327151121190622210400050000000000000510002533000000024205330001211300000000120101
....................................................TGGCTGGGGAAAATGACTGG.........................................................................................................201962.0096214214011003411000000000000010019880566704817838161185724890010010000000102102432103312230900102000110010220210000001000091817760111000001331713258235612030011100000000000000048713000000010010317420020011100000000000000
........................................................................................TATTCATTTACTCCCCAGCCTA...................................................................221958.0095821811510010130000000000036010444693401003173100810020004356320000010000301002111121500138831350300102000000022000150011110413071154210022000004111301474029231280007000000000000110000305000000013472430001306010000010000000
...................................................CTGGCTGGGGAAAATGACTGGATC......................................................................................................241867.00867000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004080402451200000000
........................................................................................TATTCATTTACTCCCCAGCCTACAATC..............................................................271766.00766000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004506281121700000000
...................................................CTGGCTGGGGAAAATGACTGGAATA.....................................................................................................252764.001528010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000008193660261800000000
...................................................CTGGCTGGGGAAAATGACTGGAA.......................................................................................................231716.00716341001001616141100000000000000001002810122020004439293209000000000010021020150000010370041000000000000311013045651131211441543400300000092828500494631621000000000000000000020010151000000035726914000112142100110000000000
...................................................CTGGCTGGGGAAAATGACTGGAT.......................................................................................................231686.00686482030001116580000000000000001123260257300000005319130300000220001011112025100020117504300000000000132104145013230005553690021000007811160504446011200000120000000100020427171300000004071718720101020014020000010000
........................................................................................TATTCATTTACTCCCCAGCCTACATC...............................................................261607.00607000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002965248382000000000
........................................................................................TATTCATTTACTCCCCAGCCTAA..................................................................231499.004990134052001024100000000000028066013391640203629240000000521010000000000402203000004001102235030020001001000312114010010020210761160114001102214508210342041000000000000000001000000400000009181010100113100000000000100
..................................................GCTGGCTGGGGAAAATGACTGGAT.......................................................................................................241463.004630230210069620000000000000110210190263100000002905000100000000000000001110001001000000000000000030201420224000011221112010000000655160140105002100000100000000100000003113000000062149814120010001210000000000000
...................................................CTGGCTGGGGAAAATGACTGGT........................................................................................................221318.00318230010001221000000000000000001062100100100015285038018000000000000000101151000000094010000000000000000010000001000032101200000000047110104712313000000000000000000001001370000000181052114101101000000001000000
...................................................CTGGCTGGGGAAAATGACTG..........................................................................................................201300.003008610000000000000000000000000010001232012134222737228000000000000020000102000040220070010000000000000000000000001005261021000010000000320102021101000000000000020000010010210000000204514100000000000000000000000
..................................................GCTGGCTGGGGAAAATGACTG..........................................................................................................211280.00280120000000102000000000000003112020434101000093619214000000000000000000000000110000030000000000000000000001000100102320200100000000200221110000000000100000000000000102020000000431014710100000000000000000000
...................................................CTGGCTGGGGAAAATGACTGT.........................................................................................................211267.0026722000000232100000000000000001124025740900015116225190000000000000000000000000001000100000000000000000100000000000065006000100000100003200100200001000000000000000000000000000054528410000000000000000010000
..................................................GCTGGCTGGGGAAAATGACTGT.........................................................................................................221262.002620400000005000000000000000000010501234000001153134103110000000000000000000000000000000100000000000000000001003000000100011000000000101100100300300000000000000000000010102000000054486110000000000000000000000
....................................................TGGCTGGGGAAAATGACTGGAT.......................................................................................................221246.0024620000000150000000000000000001003000220000004132211030000000000001001100233000100100200000000000000100100001000010002010002000000115201610041120100001000000000001001326600000002145214120000010030000000000000
..................................................GCTGGCTGGGGAAAATGACTGGAATC.....................................................................................................261244.0024400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000114010881400000000
........................................................................................TATTCATTTACTCCCCAGCCTACAC................................................................251232.0023200000000000000000000000602111841181011322325000000000000000000000000000010020000000000000001000000000000000000000000000010000200000010000001020000000000000000000000000000100000007320010000000000000000100000
........................................................................................TATTCATTTACTCCCCAGCCTACT.................................................................241227.002270510000010000000000000081100512121110172135000000200000000000000000100100010700100000021011100001001000020000001010010110300100000001970014040001000000000000010001100020200000008123210000000000000000020101
..................................................GCTGGCTGGGGAAAATGACTGGATC......................................................................................................251202.002020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000078494141100000000
....................................................TGGCTGGGGAAAATGACTGGAA.......................................................................................................221174.00174101000003510000000000000000020000001000000061621717000000000000000011000000002130010000000000000100000100100041010043100000000001151910133100300000000000000000000000000000008251550000210000000000000000
...................................................CTGGCTGGGGAAAATGACTGGATA......................................................................................................241174.0017415100000401100000000000000000000000000000000100000000000000000000000100001000200000000000000000000000000000000023013000100000101008742740010000000000000000001010030000000021226000000000440406200100000
........................................................................................TATTCATTTACTCCCCAGCCTACAATA..............................................................271162.0016200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000832733100000000
.................................................AGCTGGCTGGGGAAAATGACTGG.........................................................................................................231156.00156011000000111000000000000000021050120000000001011020000010000000000200000000001020100000000000000000000000000000001113001000000201100000100100000000000000000000210122000000020691070000000100000000000000
...................................................CTGGCTGGGGAAAATGACTGA.........................................................................................................211156.00156000000000200000000000000000000010122102000125252010000000000000000000000000000000000000000000000000100000010001000000100000000000001000100000000000000000000000000012000000039602430000000010000000000000
..................................................GCTGGCTGGGGAAAATGACTGGT........................................................................................................231154.001540210000006100000000000010000000702211000000028450100000300000000000010000000000000100000000000100112002112110002343120000000001236033404101100000000000000000010001350000000742600000000100000000000000
..........................................................................................TTCATTTACTCCCCAGCCTACA.................................................................221153.0015303121200100000000000000100220869005121616000000010000000000000000000000000100000000020011000000100000000000000000000010100000000002230311060011000100000000000000000000100000003180200011000000000000000001
....................................................TGGCTGGGGAAAATGACTGGAATC.....................................................................................................243152.6745800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000244019710700000000
..................................................GCTGGCTGGGGAAAATGACT...........................................................................................................201134.00134000000000000000000000001000000200123306552102153020000000000000000000001000002000000000100000000000000000000000000000000000000000000000000210001000000000000000000021000000015501210000000000000000010000
..................................................GCTGGCTGGGGAAAATGACTGGAA.......................................................................................................241133.0013322000000230300000000000000000005101000000000813010000000000000001000000000001000000000000000010020101001201100213103000000000046120410060000000000000000000000000013000000008270110000000120010001000000
...................................................CTGGCTGGGGAAAATGACTGGAAT......................................................................................................241132.0013203200000030300000000000000000002020000000000200000000010000000000010000010000100100000000000000000001000001100210234000000000201200260200000000000000000000000000001000000010153813000000001170120000000000
........................................................................................TATTCATTTACTCCCCAGCCTT...................................................................221131.00131022220000000000000000007102091571038151300000000000000000000000000000010030010001000001000000100000000001000001000001130001000000121010003003300010000000000000000000000000000440000001001000000001000000
..................................................GCTGGCTGGGGAAAATGACTGA.........................................................................................................221127.0012701000000000000000000000000001001002200000005320010000000000000000000000000000000000000000000000000000100000000100200000000000001100101000000000000000000000000000101000000037551510000000000000000000000
........................................................................................TATTCATTTACTCCCCAGCC.....................................................................201112.0011214102100010100000000000301105440023131400000003010001110010000000000000030011000001000000000000000000000000000000260150001000000020004003101100010000000000000000000000000000410000001101000000001000000
..............................................................................................TTTACTCCCCAGCCTACA.................................................................18199.0099000000000000000000000005231223600000000000000000000000010000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................TATTCATTTACTCCCCAGC......................................................................19195.00951151010000000000000000020100563002510700000000000000000000000000000000030000000003000000000100010000100000000000342240001000000002001206100100000000000000000000000100000000210120000000000000000000000
.........................................................................................ATTCATTTACTCCCCAGCCTACA.................................................................23192.009203100000000000000000000002207121206127600000050411000000000000000000000000000100000000000000200000000000000100001020000010000000100012000000000000000000000000000000010000000130120000000000000000000000
........................................................................................TATTCATTTACTCCCCAGCCTATT.................................................................24176.00760330100000000000000000020010381000044000000000000000000000000000000000010000000000000110000000000000000001000000011310001000000011011407002000020000000000000000000030000000011010000000000000001000000
........................................................................................TATTCATTTACTCCCCAGCCTTT..................................................................23175.0075140000000100000000000001002087900123700000000000000000000000000000000000000000000000000000000010000000000001000100030001000000061001005002400010000000000000000000000000000100000000000000000000000100
..................................................GCTGGCTGGGGAAAATGACTGGAATA.....................................................................................................26172.007200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000380253600000000
.................................................AGCTGGCTGGGGAAAATGACTGGA........................................................................................................24170.00700200000021200000000000000000011000200000000010000000000000000000100001000000000010000000000000000110001000000000100000000000000100400001000000001000000000000000000000000007340020000010000000000000000
........................................................................................TATTCATTTACTCCCCAGCCTAG..................................................................23161.0061000020003011000000000001000112100175700000000000000000000001000000003100020100000000000000000000000101000000000010030000000000010010201000000000000000000000000000000000000241110000000000000000000000
....................................................TGGCTGGGGAAAATGACTGGATC......................................................................................................23161.006100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000160316800000000
........................................................................................TATTCATTTACTCCCCAGCCTATC.................................................................24160.0060000000000000000000000000000001010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002222013000000000
...................................................CTGGCTGGGGAAAATGAC............................................................................................................18160.00600000000010020000000000000000110000000011003431320200000000000000001000000000000000000000000000000000000000100000041000001000001311050003000000000000000000000000000000000000020000000000100000000010000
..........................................................................................TTCATTTACTCCCCAGCCTAC..................................................................21160.00600200000000000000000000050020441001971000000000000000000000000000000000010000000000000000000010000000000000000000000000000000000010022001000000000000000000000000100000000000131000000000100000000000000
........................................................................................TATTCATTTACTCCCCAGCCTACACATC.............................................................28159.0059000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001901302700000000
....................................................TGGCTGGGGAAAATGACTGGT........................................................................................................21158.0058010000001100000000000000000000000000007000425732400000000000000001020000000001000000000000000110000100000000000010000000000000000030000100010000000000000000100000010000000400000000010100000000000000
........................................................................................TATTCATTTACTCCCCAGCCTAAT.................................................................24158.00580600100002101100000000000000120000121000000000000000000000000000100100301000001400000000000000100000000001002000012000000000000021001003200100000000000000000000000000000000000100000000100000000000000
..........................................................................................TTCATTTACTCCCCAGCCTACAATC..............................................................25157.005700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000284250000000000
....................................................TGGCTGGGGAAAATGACTGGATAG.....................................................................................................24155.00550000000010000000000000000000000001100000000110100000000000000000000000000000000010000000000000000000000000000000010000000000000000001020030000000000000000000000120100000009201250000000000000000000000
....................................................TGGCTGGGGAAAATGACTGGATAGA....................................................................................................25153.005310000000001000000000000000000201000010000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000002020100100000000000000000000000031000000071602100000000000000000000000
...................................................CTGGCTGGGGAAAATGACTGGC........................................................................................................22150.00500000000010000000000000020000000000000000000321321300000010100000000000000001101300000000000000000000000000000000000000000000000100040000000000000000000000000000112000000000230010000000000000000000000
.................................................................................................ACTCCCCAGCCTACACAT..............................................................18150.0050020102110001000000000000000013000010000000000000000000111002000000000000001000001000000000000000000000000000000100260011000002000005005102000020000000000000100000000000000010000000000000000000000000
....................................................TGGCTGGGGAAAATGACTGT.........................................................................................................20147.00470000000000000000000000010000000000040040001171731200000000000000000000010000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000120000000000000000000000000
..................................................GCTGGCTGGGGAAAATGACTGGATA......................................................................................................25146.004600000000000000000000000000000000000000000000100000000000000000000000000000000100000000000000000000000000000000000001000000000000001000000000000000000000000000000100000000013001000000000140173200000000
.........................................................................................ATTCATTTACTCCCCAGCCTACAATC..............................................................26146.004600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000240220000000000
........................................................................................TATTCATTTACTCCCCAGCCTTA..................................................................23143.0043010000000100000000000000010015110223300000000000000000000000000010000000001000001000000000000000000000000011000010001011000000020003003000000000000000000000000000000000000020100000100100000000000000
....................................................TGGCTGGGGAAAATGACTG..........................................................................................................19142.0042120000000000000000000000000000000011003002420000000000000000000110001000010020001000000000000000000000000000000100000000000000000012000001010000000000000000000000020000000450020000000000000000000000
...................................................CTGGCTGGGGAAAATGACTGGG........................................................................................................22142.0042000010001110000000000000000000000001000000013810400000000001000000000000000002010000000000000000001000000000000000000000000000000021000000000000000000000000000000000000000261120000000000000000000000
...................................................CTGGCTGGGGAAAATGACTGGATT......................................................................................................24138.0038021000001000000000000000000000000010000000000000000000000000000000001100000000001000000000000000001000000000101120010000000000011011300001000000000000000000000000010000000450310000000001000000000000
.........................................................................................ATTCATTTACTCCCCAGCCTAC..................................................................22138.0038010000000000000000000004010042410261200000001000000000000000000010000000000000000000000000100000000000000000000000000000000001110000000000000000000000000000100000000000000030000000000000000000000000
................................................................................................TACTCCCCAGCCTACACAT..............................................................19137.0037010010010000000000000001001004100120000000000000000000000020000000000000000000001000000000000020000000000000000110240000000000010000004000000040000000000000000000000000000000000000000110000000000000
...................................................CTGGCTGGGGAAAATGACTGGATATC....................................................................................................26137.003700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000180811000000000
.........................................................................................ATTCATTTACTCCCCAGCCTACAC................................................................24134.0034000000000000000000000000010029200361300000000100000000000000000000000000000000000001000010000000001000000000000000000010000000000000001000000000000000000000000000000000000010000000000000000000000000
....................................................TGGCTGGGGAAAATGACTGGATATC....................................................................................................25131.003100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000160150000000000
........................................................................................TATTCATTTACTCCCCAG.......................................................................18130.0030020000000000000000000000000003100001003000300000000000000000000000000020000000001000000000000000000000000000000210230000000000000000001000000000000000000000000000020000000100000000000000020000000000
.................................................AGCTGGCTGGGGAAAATGACTGGAT.......................................................................................................25129.00290000000012000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000200000100000000000010000000000000000000000000000000000000000000003140120010000000000000000000
...................................................CTGGCTGGGGAAAATGACTGGAG.......................................................................................................23127.0027000000000010000000000000000000020000000000002100000000000000000000000000010000000000000000000000000000000000000000010000000000112050001000000000000000000000000000110000000130030000000000000000000000
.......................................................................................CTATTCATTTACTCCCCAGCCTAC..................................................................24126.00260000000000000000000000000000000000000000000000000000000000000000000000000000000000260000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................AGCTGGCTGGGGAAAATGACT...........................................................................................................21126.00260000000000000000000000010000010000112000000020010000000000000000000020000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003110000000000000000000000000
..............................................................................................TTTACTCCCCAGCCTACAC................................................................19125.00250000000000000000000000011165000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000
....................................................TGGCTGGGGAAAATGACTGGATAGT....................................................................................................25125.0025000002000000000000000000000000010010100000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000001000001000000000000000000000000100000000251160000000000000000001000
...................................................CTGGCTGGGGAAAATGACTGGATAGA....................................................................................................26125.0025100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000010000000000000031002000000000000000000000000000200000000040090000000000000000000000
..........................................................................................TTCATTTACTCCCCAGCCTACAC................................................................23125.0025010000000000000000000000000031010172100000000001000000000000001100000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000
..................................................GCTGGCTGGGGAAAATGACTGGATATC....................................................................................................27125.00250000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040201000000000
.....................................TTGGAACATTGAAGCTGGCTGGGATC..................................................................................................................26124.00240000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000551400000000
..................................................GCTGGCTGGGGAAAATGAC............................................................................................................19123.0023000100000100000000000000010000000001000002005410000000000000000000000000000000000000000000000000000000000000000010010000000000001000001000000000000000000000000001000000000100000000000000000000000010
...................................................CTGGCTGGGGAAAATGACC...........................................................................................................19222.50450000000000000000000000000000000000000002430000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................TTCATTTACTCCCCAGCCTACATC...............................................................24122.00220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070114000000000
....................................................TGGCTGGGGAAAATGACTGGATA......................................................................................................23122.0022000000000000000000000000000000100000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000030010000000004063200000000
........................................................................................TATTCATTTACTCCCCAGCCTACAT................................................................25122.0022000010000000000000000000000010100000000000000000000000000000000000000000000000000001000000000000001000000000000000100000000000000000100000000000000000000000000000000000000110000000000007050000000100
.....................................................GGCTGGGGAAAATGACTGGA........................................................................................................20122.0022000000000000000000000000000001000000000000000000000000000001000010000000001000000000000000100100000000000000000000020100000000011020000001013000000000000000000000010000000110100000000000000000000000
........................................................................................TATTCATTTACTCCCCAGCCTACG.................................................................24122.0022010000001000000000000000000002000226100000000000000000010000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020300000000000000000000000
...................................................CTGGCTGGGGAAAATGACTGGAAC......................................................................................................24121.00210000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000010200000000016000000000000
.................................................AGCTGGCTGGGGAAAATGACTGT.........................................................................................................23120.0020000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000850000000000000000000000000
...................................................CTGGCTGGGGAAAATGACTGGTA.......................................................................................................23120.0020000000000100000000000000000000020010000000008120000000000000000000000000000000001000000000000000000000000000000000000000000001000000001000000000000000000000000000000000000110000000000000000000000000
........................................................................................TATTCATTTACTCCCCAGCCTACACA...............................................................26119.0019000000000000000000000000000014200001600000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000
....................................................TGGCTGGGGAAAATGACTGGAAT......................................................................................................23218.5037010000001200000000000000000000000020100000003000000000000000000000000000000000001000000000000000000000000001000000010001000000000010200011100000000000000000000101000000000250310000000004000000000000
........................................................................................TATTCATTTACTCCCCAGCCTGA..................................................................23118.0018000000000000000000000004011001000030200000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000050000000000000000000000000
.................................................AGCTGGCTGGGGAAAATGACTG..........................................................................................................22118.0018000000000000000000000000001000000010000000001010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000470000100000000000000000000
....................................................TGGCTGGGGAAAATGACTGGATT......................................................................................................23117.0017000000000100000000000000000000000000000000007010000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000001000000000220100000000100000000000000
........................................................................................TATTCATTTACTCCCCAGCCTAGT.................................................................24117.0017000000000200000000000000000010100011100000000000000001200000000000002000000000000000000000000000000000000000000000100000001000010000100000000000000000000000000000000000000010000000000000000000000000
...........................................................................................TCATTTACTCCCCAGCCTACA.................................................................21117.0017000000000000000000000003000003100124100000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
...................................................CTGGCTGGGGAAAATGACTGGATTC.....................................................................................................25116.00160000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000015010000000000
........................................................................................TATTCATTTACTCCCCAGCCTAAG.................................................................24116.0016010000000010000000000000010000000011100000000000000000000000000000000000000000000000000000000000000000000000000110000000000000010000001000000000000000000000000000000000000050010000000000000000000000
...................................................CTGGCTGGGGAAAATGACTGGAC.......................................................................................................23115.0015010000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000001000000000000000000000000001000030000000000000000000000000000000000000000100020000000002010000000000
....................................................TGGCTGGGGAAAATGACT...........................................................................................................18115.0015000000000000000000000000000001000000000100000100000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000430000000000000000000000000
...........................................................................................TCATTTACTCCCCAGCCTACAC................................................................22115.0015000000000000000000000000010013100131000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000
..............................................................................................TTTACTCCCCAGCCTACACAT..............................................................21115.0015000002000000000000000005001000000100000000000000000000000002000010000100000000000000000000000000000000000000000000000000001000000000001000000000000000000000000000000000000000000000000000000000000000
.................................................AGCTGGCTGGGGAAAATGA.............................................................................................................19115.0015000000000000000000000000000002100000000610020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000000
....................................................TGGCTGGGGAAAATGACTGGC........................................................................................................21115.0015000000000000000000000000000000000000000000330201200000000000000000000000000000000000000000000000000000000000100000000000000000000010000000010000000000000000000000000000000010000000000000000000000000
..................................................GCTGGCTGGGGAAAATGACTGGG........................................................................................................23115.0015000000000100000000000000000000000000000000001000000000010000000000000000000000000000000000000100000000000000000000010000000001000010000000000000000000000000000000000000000530000000000000000000000000
.....................................TTGGAACATTGAAGCTGGCTGGG.....................................................................................................................23115.0015000000000000000000000000000000100200000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000004010010000000000000000000000000000000000000211000000000010000000000000
.........................................................................................ATTCATTTACTCCCCAGCCTACATC...............................................................25115.00150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050100000000000
......................................TGGAACATTGAAGCTGGCTGG......................................................................................................................21114.0014000000000100000000000000000000000000000000011210000000000000000000000000000000000000000000000000000000010100000000000000000000020000100000000000000000000000000000000000000200100000000000000000000000
.................................................AGCTGGCTGGGGAAAATGACTGGT........................................................................................................24114.0014000000000100000000000001000000000000100000000000000000000000000000000000000000000000000000000000000000000000101001010000000001000000000000000000000000000000000000000000000320100000000000000000000000
........................................................................................TATTCATTTACTCCCCAGCCTACAA................................................................25114.0014000000000000000000000000010001000202000000001000000000000000000000000000000000000000000000020000000000000000000000000000000000001000000000000000000000000000000000000000000010000000000000030000000000
...................................................CTGGCTGGGGAAAATGACTGGATAG.....................................................................................................25114.0014000000000000000000000000000000000000000000000000000000000000000000000000010000300000000000000000000000000000000000000000000000000010001000000000000000000000000001000000000310110000000000000000001000
..................................................GCTGGCTGGGGAAAATGACTGGC........................................................................................................23114.0014000000000000000000000000000000000000000000006010000000000000000000000000000010000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000111000100000000000000000000
..................................................GCTGGCTGGGGAAAATGACTGGATAG.....................................................................................................26114.0014000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000001000000000000000000000000100000000370000000000000000000000000
.................................................AGCTGGCTGGGGAAAATGACTGGAATC.....................................................................................................27114.0014000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007070000000000
....................................................TGGCTGGGGAAAATGACTGA.........................................................................................................20314.004200000000000000000000000100000000020000610051001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011120110000000000000000000000
........................................................................................TATTCATTTACTCCCCAGCCTAATA................................................................25113.0013000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005071000000000
..................................................GCTGGCTGGGGAAAATGACTGGAAT......................................................................................................25113.0013000000000000000000000000000000010000000000000000000000000000000000000000010000000000000000000030000000000000000000020000000000000000001000000000000000000000000000100000000021010000000000000000000000
........................................................................................TATTCATTTACTCCCCAGCCTACACT...............................................................26113.0013010000000000000000000000000002000021300000000020000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000100
...................................................CTGGCTGGGGAAAATGACTGGATAGAATC.................................................................................................29113.0013000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008050000000000
..........................................................................................TTCATTTACTCCCCAGCCTACT.................................................................22113.0013000000200000000000000000000000000001000000000000000000220000000000000000000000000000000010000000000000000000000000000000000000012000000000000000000000000000000000000000000020000000000000000000000000
.........................................................................................ATTCATTTACTCCCCAGCCTAT..................................................................22113.0013000010000000000000000001000000101000100000000000000000000000000000000000000000000000010000000000000000000000000000000000000000010001002001000000000000000000000000000000000020000000000000000000000000
...............................................................................................TTACTCCCCAGCCTACACAT..............................................................20113.0013010021000000000000000000000001000000000000000000000000000011000000000000000100000000000000000000000000000000000000010000000000000000002000000000000000000000000000000000000010000001000000000000000000
......................................TGGAACATTGAAGCTGGCTGGG.....................................................................................................................22112.0012100000000000000000000000000000000010000000000100000000000000000000000100000000000000000000000000000000000000000000100000000000001000000000000000000000000000000110000000000310000000000000000000000000
........................................................................................TATTCATTTACTCCCCAGCCTACACATA.............................................................28112.0012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007040100000000
.......................................................CTGGGGAAAATGACTGGA........................................................................................................18212.0024000000000000000000000000000000000001000000000200000000000000002000002000001010100000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000252130000000000000000000000
...................................................CTGGCTGGGGAAAATGACG...........................................................................................................19211.50230000000000000000000000000000000000000002180020000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................ATTCATTTACTCCCCAGCCTACAATA..............................................................26111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006050000000000
.........................................................................................ATTCATTTACTCCCCAGCCT....................................................................20111.0011000000000000000000000001001010000100050000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.................................................AGCTGGCTGGGGAAAATGACTGA.........................................................................................................23111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000370010000000000000000000000
..................................................GCTGGCTGGGGAAAATGA.............................................................................................................18111.0011000000000000000000000000000000000000000125000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000100000000000000000000000000000000010000000000000000000000000
...................................................CTGGCTGGGGAAAATGACTGGAGTC.....................................................................................................25210.50210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021000000000000
........................................................................................TATTCATTTACTCCCCAGCCA....................................................................21110.0010010000010000000000000000000000100010100001000000000000000000000000000000010000000000000000000000000000000000000000010000000000000000000001000000000000000000000000000000000000000000001000000000000000
.....................................TTGGAACATTGAAGCTGGCTGG......................................................................................................................22110.0010000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000001000000000000000200000000000000001000000000000000000000000000000001000000000210000000000000000000000000
.........................................................................................ATTCATTTACTCCCCAGCCTACACATC.............................................................27110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003070000000000
...........................................................................................TCATTTACTCCCCAGCCTACACAT..............................................................2419.009000000000000000000000000000000000001000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000070000000000000000000000000000000000000000000000000000000000000000000
...................................................CTGGCTGGGGAAAATGACTGGACTC.....................................................................................................2539.00270000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000026010000000000
..................................................GCTGGCTGGGGAAAATGACTGGAG.......................................................................................................2419.009000000000001000000000000000000010000000000000000000000000000000000000000010000000000000000000000000000100000000000000000000000000000000001000000000000000000000000000000000120010000000000000000000000
..................................................GCTGGCTGGGGAAAATGACTGGATT......................................................................................................2519.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000010010000000000000010001000000000000000000000000000100000000110000000000100000000000000
cavPor3
AGTTCAGGGTACCCTTCCCTGCTCTGGTAATTAAACTTTGGAACACTGA-ACTGGCTAGGGCAAGTGCTTGGATAGAGATTGTC-CTCTATCCATTGG-TCCCCAGCCTACAGC------------------------------C-----CTGTGCCTTCAAGCCAGGGCC-TAATGSizeHit CountTotal NormTotal
No Reads
dipOrd1
----C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
hetGal2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
ochPri2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
oryCun2
AGTTCAGGGA--GTTTCCCTGATCTGGTAATTAAACTTTGGAACATTGAAACTGGCTAGGGAAAATCATCGGATAGAAAATGTTATTCTATTCATATA-TCCCCAGCCTACAAGTGAAAA-AACAAAATGTGCAGTAAACTTAATGT-ACGTACATCTTTATGTAAA-ATC-TGATGSizeHit CountTotal NormTotalGSM1528820
Adult_testes		GSM1528821
Adult_testes_Mili_IP
.GTTCAGGGA--GTTTCCCTGATC.........................................................................................................................................................2111.00110
rn5
AGCCCAGGGT-CTCCTCCCTGCTCTGTTAATTAGACTTTGGAACATTGAAGCTGGCTGGGGAAAATGATTGGATAGAAAACATTATTCTATTCATTTACTCCCCAGCCTACAAATAAAAGCAATCACA-GTACAATCAACTTCATTTTCTGCATATCTTTACGTAAAGGTC-T---TSizeHit CountTotal NormTotalGSM1528817
Adult_testes		GSM1528818
Adult_testes_Mili_IP		GSM1528819
10dpp_testes
........................................................................................TATTCATTTACTCCCCAGCCTA...................................................................222106.00212000
........................................................................................TATTCATTTACTCCCCAGCCT....................................................................21269.50139000
..................................................GCTGGCTGGGGAAAATGATTG..........................................................................................................21156.0056000
..................................................GCTGGCTGGGGAAAATGATT...........................................................................................................20115.0015000
..................................................GCTGGCTGGGGAAAATGATTGG.........................................................................................................22110.0010000
........................................................................................TATTCATTTACTCCCCAGCCTAC..................................................................23210.0020000
........................................................................................TATTCATTTACTCCCCAGCCTAT..................................................................2329.0018000
...................................................CTGGCTGGGGAAAATGATTG..........................................................................................................2019.009000
........................................................................................TATTCATTTACTCCCCAGCCTAA..................................................................2328.5017000
.........................................................................................ATTCATTTACTCCCCAGCCTA...................................................................2127.5015000
........................................................................................TATTCATTTACTCCCCAGCC.....................................................................2026.0012000
...................................................CTGGCTGGGGAAAATGATTGG.........................................................................................................2116.006000
........................................................................................TATTCATTTACTCCCCAGC......................................................................1924.509000
........................................................................................TATTCATTTACTCCCCAGCCTT...................................................................2224.008000
.................................................AGCTGGCTGGGGAAAATGATTG..........................................................................................................2213.003000
.........................................................................................ATTCATTTACTCCCCAGCCT....................................................................2022.505000
........................................................................................TATTCATTTACTCCCCAGCCTACA.................................................................2422.004000
...................................................CTGGCTGGGGAAAATGATT...........................................................................................................1912.002000
........................................................................................TATTCATTTACTCCCCAGCCTTA..................................................................2331.675000
........................................................................................TATTCATTTACTCCCCAGCCTC...................................................................2221.503000
..........................................................................................TTCATTTACTCCCCAGCCTAA..................................................................2121.002000
...................................................CTGGCTGGGGAAAATGATTGGA........................................................................................................2211.001000
..........................................................................................TTCATTTACTCCCCAGCCTACAA................................................................2321.002000
..........................................................................................TTCATTTACTCCCCAGCCTA...................................................................2021.002000
....................................................TGGCTGGGGAAAATGATTG..........................................................................................................1911.001000
.........................................................................................ATTCATTTACTCCCCAGCCTAC..................................................................2221.002000
............................................................................................CATTTACTCCCCAGCCTA...................................................................1821.002000
........................................................................................TATTCATTTACTCCCCAGCCTAG..................................................................2320.501000
..........................................................................................TTCATTTACTCCCCAGCCTAC..................................................................2120.501000
.........................................................................................ATTCATTTACTCCCCAGCCTAG..................................................................2220.501000
.........................................................................................ATTCATTTACTCCCCAGCCTC...................................................................2120.501000
.........................................................................................ATTCATTTACTCCCCAGCCTACA.................................................................2320.501000
..................................................GCTGGCTGGGGAAAATGATTA..........................................................................................................2120.501000
...........................................................................................TCATTTACTCCCCAGCCT....................................................................1820.501000
.........................................................................................ATTCATTTACTCCCCAGCCTAA..................................................................2220.501000
........................................................................................TATTCATTTACTCCCCAG.......................................................................1820.501000
..................................................GCTGGCTGGGGAAAATGA.............................................................................................................1820.501000
...........................................................................................TCATTTACTCCCCAGCCTA...................................................................1920.501000
............................................................................................CATTTACTCCCCAGCCT....................................................................1730.331000
............................................................................................CATTTACTCCCCAGCCTACATTA..............................................................2360.171000
speTri2
AGTTCAGGGT-ATCTTCCCTGTTCTGTTAATTAAACTTTGGAACATGGAAACTGGCTAGGGGAAATGATTGGATAGAAAATGTTATTCTATTCATTTA-TCCCCAGCCTACAAATGGAAG-AACAAAA-ATGCAGTAAATTTTAT-----GTATGTCATTATGTAAAGGTT-TAattSizeHit CountTotal NormTotal
No Reads

Generated: 06/17/2015 at 11:54 AM