ID:

mmu-mir-6418

 Coordinate:

chr5:137529480-137529594 -

 Confidence:

Known

 Type:

Unknown

 [View on miRBase]
[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-24.8 -24.5 -24.4

Sense Strand Reads

AGGGCAATGTCAGGGTCAGCAGAGAGCTGCCTGGCCACACTGGTGAGTGGAGCCAGAAGAGGCAAGAACACGGTCAGGGGAAGGGAAGAGATGCACTGTCCTCTAAAATGCCTGACTGCAACCTCCTTTCTCCAGGGTACCTGTCATGCTGCCGCTTCCTGGACGACAACCAAATCATCACCAGCTCTGGGGACACCACCTGGTGAGGCTCTGCC
**********************************************************..((((.((.((.(((..((((((((((.....((((..(((.............)))))))...)))))))))).....))))))).))))***************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR059769
spleen		 SRR038744
brain		 SRR553583
cerebellum		 SRR206942
brain		 SRR206941
brain		 SRR073954
blood		 SRR206940
brain		 SRR553602
testes		 SRR038741
brain		 SRR391853
embryo		 SRR391852
embryo		 SRR039610
brain		 SRR391851
embryo		 GSM510444
brain		 SRR553582
brain		 SRR390297
fibroblast		 SRR206939
brain		 SRR059770
spleen		 SRR248527
testes		 SRR391848
embryo		 SRR042471
spleen		 SRR039185
fibroblast		 SRR042469
lymph		 SRR248526
testes		 SRR040488
liver		 GSM475281
testes		 SRR391847
embryo		 SRR042459
blood		 SRR042463
spleen		 SRR116846
epididymis		 SRR059765
thymus		 SRR391846
embryo		 SRR037920
embryo		 SRR037924
embryo		 SRR553585
kidney		 SRR391845
embryo		 SRR037902
testes		 SRR037905
brain		 SRR037921
embryo		 SRR042456
bone marrow		 SRR073955
blood		 SRR248523
testes		 SRR391849
embryo		 SRR391850
embryo		 SRR037925
embryo		 SRR042466
spleen		 SRR059768
spleen		 SRR037901
testes		 SRR042468
lymph		 SRR069834
blood		 SRR095855BC1
heart		 SRR095855BC7
heart		 SRR095855BC8
heart		 SRR039183
fibroblast		 SRR037906
brain		 SRR059766
thymus		 SRR037904
brain		 SRR039184
fibroblast		 SRR042455
blood		 SRR042461
bone marrow		 SRR042462
bone marrow		 SRR042467
spleen		 SRR042484
salivary gland		 SRR059767
thymus		 SRR065056
jejunum		 SRR065059
pancreas		 SRR069809
testes		 SRR095853
heart		 SRR095855BC6
heart		 SRR248524
testes		 SRR248525
testes		 SRR042473
lymph		 SRR059772
spleen		 SRR042477
brain		 SRR345204
brain		 GSM509279
testes		 SRR037907
brain		 SRR037922
embryo		 SRR037928
embryo		 SRR037929
embryo		 SRR037930
embryo		 SRR039153
muscle		 SRR039186
fibroblast		 SRR042457
bone marrow		 SRR042464
thymus		 SRR042465
spleen		 SRR042470
lymph		 SRR042475
fibroblast		 SRR042482
skin		 SRR042483
muscle		 SRR042486
ovary		 SRR060845
brain		 SRR065049
liver		 SRR065054
jejunum		 SRR065058
pancreas		 SRR077864
liver		 SRR077865
liver		 SRR077866
liver		 SRR095855BC2
heart		 SRR095855BC3
heart		 SRR345203
brain		 SRR553603
testes		 SRR095855BC10
heart		 SRR345197
brain		 SRR345200
brain
..................................................................................................................ACTGCAACCTCCTTTCTCCAGT............................................................................... 22 1 1 451.00 451 26 29 25 24 27 20 22 18 19 10 11 15 10 12 14 11 10 10 9 8 5 8 1 5 3 4 1 3 2 3 5 2 3 0 2 2 4 2 3 2 0 3 3 1 0 2 3 2 0 2 2 3 3 2 2 1 2 2 0 2 1 2 1 1 2 1 0 0 2 0 1 0 0 1 0 0 1 0 1 1 0 1 1 1 0 1 1 1 0 1 1 0 1 0 0 0 0 0 1 0 0 1 0 0 0
..................................................................................................................ACTGCAACCTCCTTTCTCCAGA............................................................................... 22 1 1 56.00 56 0 1 3 0 1 2 1 3 0 9 5 0 4 2 0 5 1 0 0 1 0 0 0 2 0 0 0 0 1 1 0 0 1 1 0 0 0 1 1 0 2 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0
..................................................................................................................ACTGCAACCTCCTTTCTCCAG................................................................................ 21 0 1 42.00 42 4 5 4 2 0 1 1 1 1 0 1 2 0 1 1 0 1 1 2 1 1 0 0 0 0 0 0 0 1 1 0 0 0 0 2 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CTGCAACCTCCTTTCTCCAGT............................................................................... 21 1 2 16.00 32 4 3 0 4 1 1 2 1 3 0 0 1 0 0 1 0 0 0 0 0 0 2 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..................................................................................................................ACTGCAACCTCCTTTCTCCA................................................................................. 20 0 1 10.00 10 0 0 1 4 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ACTGCAACCTCCTTTCTCC.................................................................................. 19 0 1 6.00 6 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ACTGCAACCTCCTTTCTCCCGT............................................................................... 22 2 1 4.00 4 0 0 1 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TGCAACCTCCTTTCTCCAGT............................................................................... 20 1 2 4.00 8 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................TCAGGGGAAGGGAAGAGATGCAC....................................................................................................................... 23 0 1 4.00 4 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................AGGGGAAGGGAAGAGATGCACT...................................................................................................................... 22 0 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CAGGGGAAGGGAAGAGATGCACTGT.................................................................................................................... 25 0 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ACTGCAACCTCCTTTCTCCAGC............................................................................... 22 1 1 3.00 3 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CAGGGGAAGGGAAGAGATGCACT...................................................................................................................... 23 0 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................AGGGGAAGGGAAGAGATGCACTG..................................................................................................................... 23 0 1 3.00 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ACTGCAACCTCCTTTCTCCATT............................................................................... 22 2 3 2.33 7 0 0 1 0 0 1 0 1 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................GGACGACAACCAAATCATC.................................... 19 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................CCTGGACGACAACCAAATCATC.................................... 22 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................CGACAACCAAATCATCACCAGCTCTGGGGACA.................... 32 0 1 2.00 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........GTCAGGGTCAGCAGAGAGCTGCCTGGCC................................................................................................................................................................................... 28 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................AAATCATCACCAGCTCTGGGGACACC.................. 26 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........GTCAGGGTCAGCAGAGAGCT........................................................................................................................................................................................... 20 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ACTGCAACCTCCTTTCTC................................................................................... 18 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ACTGCAACCTCCTTTCTCCAT................................................................................ 21 1 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................CCTGGACGACAACCAAATC....................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CAGGTGAAGGTAAGAGATGCACT...................................................................................................................... 23 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ACTGCCACCTCCTTTCTCCAGT............................................................................... 22 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TCATCACCAGCTCTGGGGACA.................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CAGGGGAAGGGAAGAGATGCACTGTC................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ACTGCAACATCCTTTCTCCAG................................................................................ 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................GTGAGTGGAGCCAGAAGAGGCAAG..................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................TGACTGCAACCTCCTTTCTCCAGAA.............................................................................. 25 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................ACGACAACCAAATCATCACCAGC.............................. 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CAGGGGAAGGGAAGAGATGCACTG..................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TCATCACCAGCTCTGGGGTCACCA................. 24 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TCTAAAATGCCTGACTGCAACCTC.......................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
AGGGCAATGTCAGGGTCAG.................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ACTGCAACCTCCTTTCTCAAGT............................................................................... 22 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................TGACTGCAACCTCCTTTCTCCAG................................................................................ 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................GTCAGGGGAAGGGAAGAGATGCAT....................................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CAGGGGAAGGGAAGAGATGCAC....................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................CTGGGTACCTGTCATGCTGCC.............................................................. 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................AATCATCACCAGCTCTGGG........................ 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ACTGCAACCTCCTTGCTCCAGG............................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........GTCAGGGTCAGCGGAGAGCTGCCTGGCC................................................................................................................................................................................... 28 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................CATCACCAGCTCTGGGGACACCACCT.............. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TCCTGGACGACAACCAAATC....................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ACTACAACCTCCTTTCTCCAGT............................................................................... 22 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ACTGCAACCTCCGTTCTCCAGT............................................................................... 22 2 2 1.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................CACTGCAACCTCCTTTCTCCA................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................TCAGGGGAAGGGAAGAGATGCA........................................................................................................................ 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................AACCAAATCATCACCAGCTCTGGGGACACC.................. 30 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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.......................................................................................................................................................................................GCTCTGGGGACACCACCTGTG........... 21 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................GCTGCCTGGCCACACTGGG........................................................................................................................................................................... 19 1 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CTGCCACCTCCTTTCTCCAGT............................................................................... 21 2 9 0.11 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................AGAGATGCACTGTCC.................................................................................................................. 15 0 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
................................................................................................................................................................GGACGACAACCAAATGCTC.................................... 19 2 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................GGCTTACTGGACGACAAC............................................. 18 2 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CTGCAACCTCCTTTCTCCAGTAG............................................................................. 23 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ACTGCAACTCCCTTTCTCCA................................................................................. 20 2 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................GCCACACTGGTGAGTGT..................................................................................................................................................................... 17 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
......................................................................................AGAGATGCACAGTCCTC................................................................................................................ 17 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................CGGATTACTGGACGACAAC............................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................AGGCATGAACACGGTC............................................................................................................................................ 16 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.......................................................GAAGAGGCAAGAACA................................................................................................................................................. 15 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TCCCGTTACAGTCCCAGTCGTCTCTCGACGGACCGGTGTGACCACTCACCTCGGTCTTCTCCGTTCTTGTGCCAGTCCCCTTCCCTTCTCTACGTGACAGGAGATTTTACGGACTGACGTTGGAGGAAAGAGGTCCCATGGACAGTACGACGGCGAAGGACCTGCTGTTGGTTTAGTAGTGGTCGAGACCCCTGTGGTGGACCACTCCGAGACGG
*****************************************************************..((((.((.((.(((..((((((((((.....((((..(((.............)))))))...)))))))))).....))))))).))))********************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039185
fibroblast		 SRR391850
embryo		 SRR073954
blood		 SRR345198
brain		 SRR553585
kidney		 SRR116846
epididymis		 SRR345207
brain		 SRR391851
embryo		 SRR037902
testes		 SRR345200
brain		 SRR065059
pancreas		 SRR345202
brain		 SRR391852
embryo
.....................................................................................................................CGTTGGAGGAAAGAGGTCCC.............................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................TGTTGGCGGAAAGATGTCCCAT............................................................................ 22 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................AAGGAGGTCCCATGGCCCGTACG.................................................................. 23 3 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................CGTTGAAGGCAAGATGTCCCAT............................................................................ 22 3 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................CGTTGGAGGAAACAGGTC................................................................................ 18 1 8 0.13 1 0 0 0 0 0 1 0 0 0 0 0 0 0
......................TGTCGACGGGGCGGTGTGACCA........................................................................................................................................................................... 22 3 9 0.11 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................TACGGACTGTCATTGGATGAAAG..................................................................................... 23 3 9 0.11 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................CAGTATGAGGGCGAAGGAC...................................................... 19 2 15 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................TTCCGGAGTTACGTTGGAGGAA....................................................................................... 22 3 15 0.07 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................AGTACGAGGGCGAAGGA....................................................... 17 1 17 0.06 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................CGGCGGCGATGGACCTGC.................................................. 18 2 17 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................CCTTACCGTCTCTACGTGAC..................................................................................................................... 20 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................................................................................GCTGTTGGTTGAGTA..................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1
.........................................................................................................TTTACGGACTGACGCT.............................................................................................. 16 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................GCTGTTGGTTGAGTAGTC.................................. 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................................CCACAGCGAACGACCTGCTG................................................ 20 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
mm10 chr5:137529430-137529644 - mmu-mir-6418 AGGGCAATGTCAGGGTCAGCAGAGAGCTGCCTGGCCACACTGGTGAGTGGAGCCAGAA---GAGGCAAGAACACGGTCAGG-GG-AAGGGAAG-AGATGCACTGTCCTC--TAA-----AATGCCTGACTG--CA-ACCTCCTTTCTCCAGGGTACCTGTCATGCTGCCGCTTCCTGGACGACAACCAAATCATCACCAGCTCTGG-GGACACCACCTGGTGAGGCTCTGCC
cavPor3 scaffold_30:3301013-3301224 - AAGGCAATGTCAGGGTCAGCCGGGAGCTGCCTGGCCACACTGGTGAGAGGGGTTCAGC---A-GGCAAGGGCTTTGCTGTAGGAG-----AGG-GGCTGTGCTACCCTCCC--AT-----TGACTCAGCTGACCA-GCC-TCTCTCCCCAGGGTACTTGTCGTGCTGCCGCTTTCTGGATGACAACCAAATCATCACCAGCTCTGG-GGATACCACCTGGTGAGGCCTCACA
dipOrd1 scaffold_3726:28571-28778 - AGGGCAATGTCAGGGTCAGCCGGGAGCTGCCTGGCCACACTGGTGAGAGGAGTCTGGC---TGGGCAAGGGCACTG------GGCT-----GG-GGGAGTGCTGACCTCCCTG-------AGACTTGGCTGACCA-GCC-CTTTTCCACAGGGTACCTGTCATGCTGCCGTTTCTTGGATGACAACCAAATCATCACCAGCTCTGGAAGATACCACCTGGTGAGGCCCTTCC
hetGal2 Unknown ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ochPri2 scaffold_516:273536-273747 + AGGGCAATGTCCGGGTCAGCCGGGAACTGCCTGGCCACACCGGTGAGGGGGGCCTGGC---TGGGTGTGGAGGCTG---CG-GGTT-----GGGGCTATCTCTCCTGTCC---ATCACCCGGGCCTACTTGACC--GCT-CCTTCCCCTAGGGTACCTGTCATGCTGCCGCTTCCTGGATGACAACCAGATCATCACCAGCTCTGG-GGATACCACCTGGTGAG-CCCTGCC
oryCun2 chr6:27145355-27145566 - AGGGCAACGTCAGGGTCAGCCGGGAGCTGCCTGGCCACACTGGTGAGAGGGGCCTGGC---TGGGCACAGGCGCTG---GG-GG-T-G--GGG-GGTTGTGCCGCGGTTCCTA-T---TAAGACCTGGCTGACT--GCC-CTTCTCCCCAGGGTACCTGTCTTGCTGCCGATTCCTGGATGACAACCAAATCATCACCAGCTCTGG-GGATACCACCTGGTGAGGCCCCGCC
rn5 chr12:24249381-24249596 + AGGGCAATGTCAGGGTCAGCAGAGAGCTGCCTGGCCATACTGGTGAGTGGGGCCTGAAGAAGAGGCGAGA---TGGTCGGG-GA-GAGGGAAG-GGACGCACTGTCTTCCCTA---------ACACGCCTGACCATGCCTCCTTTCCCAAGGGTACCTCTCCTGCTGCCGCTTCCTGGACGACAACCAAATCATCACCAGCTCTGG-GGACACCACCTGGTGAGGCTCTGCC
speTri2 JH393353:708535-708749 + AGGGCAATGTCAGGGTCAGCCGGGAGCTGCCTGGCCATACTGGTGAGAGGGGCCTGGC---CGTGTAAGGGCGCTGTTATCTGGTC-----AG-GGCCTTGCTGCTCTCCCTGA-----GAGACTCCACTGACCA-GCC-CTCTTCCTTAGGGTACCTGTCATGCTGCCGCTTCCTGGATGACAACCAAATAATCACCAGCTCTGG-GGATACCACCTGGTAAGGCCCTTCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
mm10
AGGGCAATGTCAGGGTCAGCAGAGAGCTGCCTGGCCACACTGGTGAGTGGAGCCAGAA---GAGGCAAGAACACGGTCAGG-GG-AAGGGAAG-AGATGCACTGTCCTC--TAA-----AATGCCTGACTG--CA-ACCTCCTTTCTCCAGGGTACCTGTCATGCTGCCGCTTCCTGGACGACAACCAAATCATCACCAGCTCTGG-GGACACCACCTGGTGAGGCTCTGCCSizeHit CountTotal NormTotalSRR042455
blood		SRR042459
blood		SRR042460
blood		SRR069834
blood		SRR073954
blood		SRR073955
blood		SRR525238
Blood		SRR525237
Blood		SRR042456
bone marrow		SRR042457
bone marrow		SRR042461
bone marrow		SRR042462
bone marrow		GSM317181
brain		GSM317182
brain		GSM361394
brain		GSM361395
brain		GSM361398
brain		GSM361399
brain		GSM361402
brain		GSM361407
brain		GSM361408
brain		GSM361415
brain		GSM361430
brain		GSM510444
brain		SRR037904
brain		SRR037905
brain		SRR037906
brain		SRR037907
brain		SRR038741
brain		SRR038744
brain		SRR039610
brain		SRR042477
brain		SRR060845
brain		SRR206939
brain		SRR206940
brain		SRR206941
brain		SRR206942
brain		SRR345196
brain		SRR345197
brain		SRR345198
brain		SRR345199
brain		SRR345200
brain		SRR345201
brain		SRR345202
brain		SRR345203
brain		SRR345204
brain		SRR345205
brain		SRR345206
brain		SRR345207
brain		SRR037919
embryo		SRR037920
embryo		SRR037921
embryo		SRR037922
embryo		SRR037923
embryo		SRR037924
embryo		SRR037925
embryo		SRR037926
embryo		SRR037927
embryo		SRR037928
embryo		SRR037929
embryo		SRR037930
embryo		SRR391845
embryo		SRR391846
embryo		SRR391847
embryo		SRR391848
embryo		SRR391849
embryo		SRR391850
embryo		SRR391851
embryo		SRR391852
embryo		SRR391853
embryo		SRR116846
epididymis		GSM566419
fibroblast		GSM566420
fibroblast		SRR039183
fibroblast		SRR039184
fibroblast		SRR039185
fibroblast		SRR039186
fibroblast		SRR042475
fibroblast		SRR390297
fibroblast		SRR390298
fibroblast		SRR042484
salivary gland		SRR042476
heart		SRR095853
heart		SRR095855BC1
heart		SRR095855BC10
heart		SRR095855BC2
heart		SRR095855BC3
heart		SRR095855BC4
heart		SRR095855BC5
heart		SRR095855BC6
heart		SRR095855BC7
heart		SRR095855BC8
heart		SRR095855BC9
heart		SRR065052
jejunum		SRR065053
jejunum		SRR065054
jejunum		SRR065055
jejunum		SRR065056
jejunum		SRR042480
kidney		SRR040488
liver		SRR042479
liver		SRR065045
liver		SRR065046
liver		SRR065047
liver		SRR065048
liver		SRR065049
liver		SRR065050
liver		SRR077864
liver		SRR077865
liver		SRR077866
liver		SRR042478
lung		SRR042468
lymph		SRR042469
lymph		SRR042470
lymph		SRR042472
lymph		SRR042473
lymph		SRR039152
muscle		SRR039153
muscle		SRR039154
muscle		SRR042483
muscle		SRR014234
ovary		SRR037896
ovary		SRR037897
ovary		SRR037898
ovary		SRR037899
ovary		SRR042486
ovary		SRR042481
pancreas		SRR065058
pancreas		SRR065059
pancreas		SRR042482
skin		SRR042463
spleen		SRR042465
spleen		SRR042466
spleen		SRR042467
spleen		SRR042471
spleen		SRR042487
spleen		SRR059768
spleen		SRR059769
spleen		SRR059770
spleen		SRR059771
spleen		SRR059772
spleen		SRR059773
spleen		GSM475281
testes		GSM509275
testes		GSM509279
testes		SRR014231
testes		SRR014235
testes		SRR014236
testes		SRR028731
testes		SRR037900
testes		SRR037901
testes		SRR037902
testes		SRR037903
testes		SRR042485
testes		SRR051939
testes		SRR051940
testes		SRR069809
testes		SRR069810
testes		SRR069811
testes		SRR248523
testes		SRR248524
testes		SRR248525
testes		SRR248526
testes		SRR248527
testes		SRR363956
testes		SRR363957
testes		SRR363958
testes		SRR363959
testes		SRR363960
testes		SRR363963
testes		SRR363964
testes		SRR553582
brain		SRR553583
cerebellum		SRR553584
heart		SRR553585
kidney		SRR553602
testes		SRR553603
testes		SRR553604
testes		SRR553586
testes		SRR042464
thymus		SRR059765
thymus		SRR059766
thymus		SRR059767
thymus		SRR032476
uterus		SRR032477
uterus
...............................................................................................................................ACTG--CA-ACCTCCTTTCTCCAGT................................................................................221451.0045103022000021210000000000012222119291510102227240000000000000330000001102218311011103002281111010020100023300000203000001000000110001010000010010212250326100004000000024000000030159000000014250218100051100
...............................................................................................................................ACTG--CA-ACCTCCTTTCTCCAGA................................................................................22156.005600002200000000000000000201000100011100000000000000110011000000001004591000000050000100100000000000000000000100000000000000000000001000000000000000000000000010001120000000003003000001000
...............................................................................................................................ACTG--CA-ACCTCCTTTCTCCAG.................................................................................21142.004200001100000100000000000101001520111020000000010000000000000000001000101000000000100000000000000000000000000000000000000000000001101000100410000000000000000000000002000000014021000000000
................................................................................................................................CTG--CA-ACCTCCTTTCTCCAGT................................................................................21216.003201001000000000000000000000103310002140000000000000000000000000020000000001020000000010000000000000000000000000000001000000000000000000001400100000000000000000000000000000010001000000000
...............................................................................................................................ACTG--CA-ACCTCCTTTCTCCA..................................................................................20110.001000000000000000000000000000000000000040000000000000000000000000010000001000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000011000000000000
...............................................................................................................................ACTG--CA-ACCTCCTTTCTCC...................................................................................1916.00600000000000000000000000100000100000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000010000000000000000100000
.................................................................................................................................TG--CA-ACCTCCTTTCTCCAGT................................................................................2024.00800000000000000000000000000001000000000000000000000000043000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................TCAGG-GG-AAGGGAAG-AGATGCAC..................................................................................................................................2314.00400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000300000000000000000000000000000000000000000000000
..............................................................................AGG-GG-AAGGGAAG-AGATGCACT.................................................................................................................................2213.00300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000200000000000000000000000000000000000000000000000000
.............................................................................CAGG-GG-AAGGGAAG-AGATGCACTGT...............................................................................................................................2513.00300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000010000000000000000000000010000000000000000000000
...............................................................................................................................ACTG--CA-ACCTCCTTTCTCCAGC................................................................................2213.00300000000000000000000000100000000000100000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................CAGG-GG-AAGGGAAG-AGATGCACT.................................................................................................................................2313.00310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................AGG-GG-AAGGGAAG-AGATGCACTG................................................................................................................................2313.00300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000100000000000000000000000000000000000000000000000
...............................................................................................................................ACTG--CA-ACCTCCTTTCTCCATT................................................................................2232.33700001000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000011001000000000
................................................................................................................................................................................GGACGACAACCAAATCATC.....................................1912.00200000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................CCTGGACGACAACCAAATCATC.....................................2212.00200000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................CGACAACCAAATCATCACCAGCTCTGG-GGACA....................3212.00200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000
........GTCAGGGTCAGCAGAGAGCTGCCTGGCC....................................................................................................................................................................................................2812.00200000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................AAATCATCACCAGCTCTGG-GGACACC..................2612.00200000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
........GTCAGGGTCAGCAGAGAGCT............................................................................................................................................................................................................2012.00200000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................ACTG--CA-ACCTCCTTTCTC....................................................................................1812.00200000000000000000000000000000010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................ACTG--CA-ACCTCCTTTCTCCAT.................................................................................2112.00200000000000000000000000000000000010000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................CCTGGACGACAACCAAATC........................................1911.00100000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................TCATCACCAGCTCTGG-GGACA....................2111.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................CAGG-GG-AAGGGAAG-AGATGCACTGTC..............................................................................................................................2611.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
..........................................GTGAGTGGAGCCAGAA---GAGGCAAG...................................................................................................................................................................2411.00100000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TGACTG--CA-ACCTCCTTTCTCCAGAA...............................................................................2511.00100000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................ACGACAACCAAATCATCACCAGC...............................2311.00100000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................CAGG-GG-AAGGGAAG-AGATGCACTG................................................................................................................................2411.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
...........................................................................................................TC--TAA-----AATGCCTGACTG--CA-ACCTC...........................................................................................2411.00100000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AGGGCAATGTCAGGGTCAG.....................................................................................................................................................................................................................1911.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.............................................................................................................................TGACTG--CA-ACCTCCTTTCTCCAG.................................................................................2311.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
...........................................................................GTCAGG-GG-AAGGGAAG-AGATGCAT..................................................................................................................................2411.00100000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................CAGG-GG-AAGGGAAG-AGATGCAC..................................................................................................................................2211.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................AATCATCACCAGCTCTGG-G........................1911.00100000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................CATCACCAGCTCTGG-GGACACCACCT..............2611.00100000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................TCCTGGACGACAACCAAATC........................................2011.00100000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................TCAGG-GG-AAGGGAAG-AGATGCA...................................................................................................................................2211.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................AACCAAATCATCACCAGCTCTGG-GGACACC..................3011.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................AGG-GG-AAGGGAAG-AGATGCAC..................................................................................................................................2111.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................GGACGACAACCAAATCATCACC..................................2211.00100000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................GTCATGCTGCCGCTTCCTGGAC....................................................2211.00100000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................AGTGGAGCCAGAA---GAGGCAAGAACACGGT...........................................................................................................................................................2911.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
................................................................................................................................CTG--CA-ACCTCCTTTCTCCAGA................................................................................2111.00101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................TGCCGCTTCCTGGACGACA................................................1911.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................AAATCATCACCAGCTCTGG-GGACAC...................2511.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................ACCAGCTCTGG-GGACACCACC...............2111.00100000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................GCTTCCTGGACGACAACCAAATCA.......................................2411.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................ACTG--CA-ACCTCCTTTCTCCAGG................................................................................2211.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
.........................................................................................................................................................................GCTTCCTGGACGACAACCAAA..........................................2111.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
............................................................................TCAGG-GG-AAGGGAAG-AGATGCACT.................................................................................................................................2411.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...........................................TGAGTGGAGCCAGAA---GAGGCAAGAACA...............................................................................................................................................................2711.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
............................................................................TCAGG-GG-AAGGGAAG-AGATGCACTGTC..............................................................................................................................2711.00100000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................ACTG--CA-ACCTCCTTTCTCCAGTT...............................................................................2321.00200000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................TCTGG-GGACACCACCTGG............1811.00100000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................GCTTCCTGGACGACAACCAA...........................................2011.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................TCAGG-GG-AAGGGAAG-AGATGCACTG................................................................................................................................2511.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
.............................................................................CAGG-GG-AAGGGAAG-AGATGCA...................................................................................................................................2111.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................CTG--CA-ACCTCCTTTCTCCAG.................................................................................2011.00100000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................AGG-GG-AAGGGAAG-AGATGCACTGTC..............................................................................................................................2511.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...........................................................................GTCAGG-GG-AAGGGAAG-AGATGCAA..................................................................................................................................2411.00100000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TCAGGGTCAGCAGAGAGCTGCC.........................................................................................................................................................................................................2211.00100000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................GCCGCTTCCTGGACGACAACCAA...........................................2311.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................G-GG-AAGGGAAG-AGATGCACTGTCT.............................................................................................................................2411.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
............................................................................................................................................................................TCCTGGACGACAACCAAATCATCACC..................................2611.00100000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................CTGGACGACAACCAAATCATCA....................................2211.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................ACTG--CA-ACCTCCTTTCTCCATA................................................................................2240.50200000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................G--CA-ACCTCCTTTCTCCAGT................................................................................1940.50200000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CAGGGTCAGCAGAGAGCT............................................................................................................................................................................................................1820.50100000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................ACTG--CA-ACCTCCTTTCTCCAA.................................................................................2130.33100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
...............................................................................................................................ACTG--CA-ACCTCCTTTCTCCAGTA...............................................................................2330.33100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
..............................................................................AGG-GG-AAGGGAAG-AGATGCAA..................................................................................................................................2130.33100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...............................................................................................................................ACTG--CA-ACCTCCTTTCTCCAGTAG..............................................................................2450.20100000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................CTG--CA-ACCTCCTTTCTCCAGTA...............................................................................2250.20100000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................GCTCTGG-GGACACCACCTGTG...........2160.17100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................GCTGCCTGGCCACACTGGG............................................................................................................................................................................................1980.13100000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................AG-AGATGCACTGTCC.............................................................................................................................1590.11100000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................CTG--CA-ACCTCCTTTCTCCAGTAG..............................................................................23160.06100000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................GCCACACTGGTGAGTGT......................................................................................................................................................................................17200.05100000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................GAA---GAGGCAAGAACA...............................................................................................................................................................15200.05100000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
cavPor3
AAGGCAATGTCAGGGTCAGCCGGGAGCTGCCTGGCCACACTGGTGAGAGGGGTTCAGC---A-GGCAAGGGCTTTGCTGTAGGAG-----AGG-GGCTGTGCTACCCTCCC--AT-----TGACTCAGCTGACCA-GCC-TCTCTCCCCAGGGTACTTGTCGTGCTGCCGCTTTCTGGATGACAACCAAATCATCACCAGCTCTGG-GGATACCACCTGGTGAGGCCTCACASizeHit CountTotal NormTotal
No Reads
dipOrd1
AGGGCAATGTCAGGGTCAGCCGGGAGCTGCCTGGCCACACTGGTGAGAGGAGTCTGGC---TGGGCAAGGGCACTG------GGCT-----GG-GGGAGTGCTGACCTCCCTG-------AGACTTGGCTGACCA-GCC-CTTTTCCACAGGGTACCTGTCATGCTGCCGTTTCTTGGATGACAACCAAATCATCACCAGCTCTGGAAGATACCACCTGGTGAGGCCCTTCCSizeHit CountTotal NormTotal
No Reads
hetGal2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
ochPri2
AGGGCAATGTCCGGGTCAGCCGGGAACTGCCTGGCCACACCGGTGAGGGGGGCCTGGC---TGGGTGTGGAGGCTG---CG-GGTT-----GGGGCTATCTCTCCTGTCC---ATCACCCGGGCCTACTTGACC--GCT-CCTTCCCCTAGGGTACCTGTCATGCTGCCGCTTCCTGGATGACAACCAGATCATCACCAGCTCTGG-GGATACCACCTGGTGAG-CCCTGCCSizeHit CountTotal NormTotal
No Reads
oryCun2
AGGGCAACGTCAGGGTCAGCCGGGAGCTGCCTGGCCACACTGGTGAGAGGGGCCTGGC---TGGGCACAGGCGCTG---GG-GG-T-G--GGG-GGTTGTGCCGCGGTTCCTA-T---TAAGACCTGGCTGACT--GCC-CTTCTCCCCAGGGTACCTGTCTTGCTGCCGATTCCTGGATGACAACCAAATCATCACCAGCTCTGG-GGATACCACCTGGTGAGGCCCCGCCSizeHit CountTotal NormTotalGSM1528820
Adult_testes		GSM1528821
Adult_testes_Mili_IP
......................................................................................................................................................GGGTACCTGTCTTGCTGCCGATTCCTGGATGACG................................................3411.00110
rn5
AGGGCAATGTCAGGGTCAGCAGAGAGCTGCCTGGCCATACTGGTGAGTGGGGCCTGAAGAAGAGGCGAGA---TGGTCGGG-GA-GAGGGAAG-GGACGCACTGTCTTCCCTA---------ACACGCCTGACCATGCCTCCTTTCCCAAGGGTACCTCTCCTGCTGCCGCTTCCTGGACGACAACCAAATCATCACCAGCTCTGG-GGACACCACCTGGTGAGGCTCTGCCSizeHit CountTotal NormTotalGSM1528817
Adult_testes		GSM1528818
Adult_testes_Mili_IP		GSM1528819
10dpp_testes
..........CAGGGTCAGCAGAGAGCTGCCTGAAA....................................................................................................................................................................................................2611.001000
speTri2
AGGGCAATGTCAGGGTCAGCCGGGAGCTGCCTGGCCATACTGGTGAGAGGGGCCTGGC---CGTGTAAGGGCGCTGTTATCTGGTC-----AG-GGCCTTGCTGCTCTCCCTGA-----GAGACTCCACTGACCA-GCC-CTCTTCCTTAGGGTACCTGTCATGCTGCCGCTTCCTGGATGACAACCAAATAATCACCAGCTCTGG-GGATACCACCTGGTAAGGCCCTTCASizeHit CountTotal NormTotal
No Reads

Generated: 05/01/2015 at 12:05 AM