ID:

mmu-mir-541

 Coordinate:

chr12:109742409-109742498 +

 Confidence:

Known

 Type:

Unknown

 [View on miRBase]
[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-37.8

Sense Strand Reads

ACCAGTCTCTTGCTGCCCTGCAGCAAGGCTAGAAGCCTGTGTGAACTCTTGCCAAAATCAGAGAAGGGATTCTGATGTTGGTCACACTCCAAGAGTTTTAAAATGAGTGGCGAACACAGAATCCATACTCTGCTTATGGCCTAAGTCAATGGATCCTGACCCTTACTGGAGAGCCCTCCCTGGCGTGCTC
************************************************..((((.((.(((((...((((((((.((((.(((((((((...))))..........))))).))))))))))))...))))).)).))))....********************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR390298
fibroblast		 SRR390297
fibroblast		 SRR553582
brain		 SRR553602
sertoli_cells		 SRR039186
fibroblast		 SRR206940
brain		 SRR039185
fibroblast		 SRR248526
Thy1-_somatic_testes_cells		 SRR039183
fibroblast		 SRR040488
liver		 SRR391853
embryo		 SRR391852
embryo		 SRR553583
cerebellum		 SRR039184
fibroblast		 SRR391851
embryo		 SRR206939
brain		 SRR206942
brain		 SRR206941
brain		 SRR391849
embryo		 SRR038744
brain		 SRR1509750
spermatogonia		 SRR391848
embryo		 SRR391850
embryo		 SRR1509751
foetal_primordial_germ_cells		 SRR039610
brain		 SRR038741
brain		 SRR014231
testes		 SRR248525
Thy1-_somatic_testes_cells		 GSM510444
brain		 SRR345204
brain		 SRR248524
Thy1+_spermatogonia		 SRR042477
brain		 SRR391845
embryo		 SRR345205
brain		 SRR345203
brain		 SRR345202
brain		 SRR391846
embryo		 SRR391847
embryo		 SRR553584
heart		 SRR042471
spleen		 SRR248523
Thy1+_spermatogonia		 SRR345207
brain		 SRR037921
embryo		 SRR345198
brain		 SRR345201
brain		 SRR060845
brain		 SRR037920
embryo		 SRR042475
fibroblast		 SRR037906
brain		 SRR345199
brain		 SRR345197
brain		 SRR037905
brain		 SRR1509747
oocyte		 SRR345200
brain		 SRR037924
embryo		 SRR037925
embryo		 SRR1509749
zygote		 SRR077866
liver		 SRR345196
brain		 SRR248527
spermatogonia		 SRR037922
embryo		 SRR065058
pancreas		 SRR042483
muscle		 SRR042462
bone marrow		 SRR345206
brain		 SRR065059
pancreas		 SRR042484
salivary gland		 SRR042486
ovary		 SRR037907
brain		 SRR042463
spleen		 SRR042481
pancreas		 SRR037929
embryo		 SRR116846
epididymis		 SRR553585
kidney		 SRR037928
embryo		 SRR037919
embryo		 SRR037904
brain		 SRR553604
spermatocytes		 SRR014234
ovary		 SRR032477
uterus		 SRR553603
spermatids		 SRR037923
embryo		 SRR095855BC7
heart		 SRR032476
uterus		 SRR065046
liver		 SRR065050
liver		 SRR037926
embryo		 SRR065045
liver		 SRR065047
liver		 SRR553586
testes		 SRR073954
blood		 SRR069809
Type_A_spermatogonia		 SRR095855BC8
heart		 GSM475281
testes		 SRR065048
liver		 SRR037927
embryo		 SRR077865
liver		 SRR042482
skin		 SRR1647950
Dicer_cKO_leptotene_zygotene_spermatocytes		 SRR077864
liver		 SRR037930
embryo		 SRR042478
lung		 SRR1647954
Dicer_cKO_pachytene_spermatocytes		 SRR1647947
Dgcr8_WT_leptotene_zygotene_spermatocytes		 SRR065049
liver		 SRR065056
jejunum		 SRR073955
blood		 SRR037902
testes		 SRR095855BC6
heart		 SRR1647949
Dicer_WT_leptotene_zygotene_spermatocytes		 SRR1647951
Dgcr8_WT_pachytene_spermatocytes		 SRR095855BC5
heart		 SRR065052
jejunum		 SRR065055
jejunum		 SRR095855BC1
heart		 SRR042473
lymph		 SRR037901
testes		 SRR042479
liver		 SRR095855BC2
heart		 SRR042480
kidney		 SRR1509748
spermatozoa		 SRR037897
ovary		 SRR1647953
Dicer_WT_pachytene_spermatocytes		 SRR059768
spleen		 SRR095855BC3
heart		 SRR051940
testes		 SRR042456
bone marrow		 SRR037898
ovary		 SRR069811
round_spermatid		 SRR042476
heart		 SRR069810
pachytene_spermatocytes		 GSM317181
brain		 SRR065053
jejunum		 SRR042485
testes		 SRR095853
heart		 SRR1647948
Dgcr8_cKO_leptotene_zygotene_spermatocytes		 SRR065054
jejunum		 SRR042465
spleen		 SRR037903
testes		 GSM509275
testes		 GSM509279
testes		 SRR059771
spleen		 SRR095855BC10
heart		 SRR037899
ovary		 SRR014235
testes		 SRR037900
testes		 SRR042472
lymph		 GSM566419
fibroblast		 SRR014236
testes		 SRR042470
lymph		 SRR042487
spleen		 SRR095855BC4
heart		 SRR525238
Blood		 SRR059770
spleen		 GSM566420
fibroblast		 SRR042457
bone marrow		 SRR042459
blood		 SRR042461
bone marrow		 SRR095855BC9
heart		 SRR042466
spleen		 SRR1647952
Dgcr8_cKO_pachytene_spermatocytes		 SRR042468
lymph		 SRR059767
thymus		 SRR059769
spleen		 GSM317182
brain		 SRR037896
ovary		 SRR042455
blood		 SRR042460
blood		 SRR042467
spleen		 SRR042469
lymph		 SRR051939
testes		 SRR059766
thymus		 SRR069834
blood		 SRR525237
Blood
...............................................................AAGGGATTCTGATGTTGGTCACACT...................................................................................................... 25 0 1 546350.00 546350 131965 82849 36144 30326 17727 16849 13231 8261 12688 8619 18818 18351 12600 7442 17204 9617 7219 5891 12538 8514 0 9169 10974 0 5700 6183 5136 2014 2954 0 1961 1331 3082 30 257 5 2649 2100 1105 2174 1366 1 1566 8 1 265 1330 673 950 2 3 741 0 0 551 561 0 274 2 640 296 55 56 246 0 66 39 80 174 118 42 281 84 71 193 169 141 212 3 46 163 120 22 14 39 28 76 43 41 61 69 28 12 17 19 60 20 15 45 30 29 6 40 47 17 8 27 13 4 39 34 4 5 8 6 2 15 8 7 3 0 13 27 3 5 6 5 5 3 3 1 4 3 4 0 4 1 3 7 1 1 0 1 1 6 5 1 1 1 2 0 0 1 0 1 1 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................AAGGGATTCTGATGTTGGTCAC......................................................................................................... 22 0 1 216442.00 216442 20251 13375 29779 9141 10528 10070 7844 12404 6694 11129 3362 3082 6123 5385 1077 5333 6126 5499 1589 4546 0 1235 881 0 3567 3308 35 3112 1390 4095 2495 1849 675 2754 1944 1559 509 461 1179 1232 1187 1448 409 41 166 1248 366 905 391 19 114 335 0 6 150 114 0 236 31 197 140 154 319 153 155 135 139 162 98 150 114 72 150 93 45 50 58 46 119 95 34 22 60 87 60 54 22 35 31 18 4 42 36 9 29 15 28 25 16 23 14 31 4 4 15 22 10 5 23 2 2 12 17 17 12 9 7 9 9 14 0 3 1 3 3 14 12 7 11 6 7 5 10 6 0 4 4 4 1 1 1 0 6 1 1 0 2 1 0 2 1 0 0 1 1 2 2 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................AAGGGATTCTGATGTTGGTCA.......................................................................................................... 21 0 1 207077.00 207077 47436 19032 28188 3917 7911 10924 6535 9845 4149 4155 2382 3115 5173 4030 1514 4909 4611 4395 315 1811 0 314 176 0 1347 1227 5 2034 1464 2504 1685 1305 230 1954 1802 2706 185 166 1497 633 906 1528 148 105 1329 576 116 523 487 52 1082 367 0 7 64 91 0 180 102 112 47 296 253 34 235 245 284 149 122 168 241 36 174 161 44 15 52 32 71 84 39 10 49 70 36 33 14 26 39 22 12 40 55 48 25 8 23 37 16 17 5 19 4 11 10 18 3 16 12 7 0 14 22 14 11 20 9 4 11 16 0 7 1 19 5 9 4 7 6 9 4 0 3 7 0 6 10 6 3 1 1 0 1 2 0 3 4 0 0 1 4 1 2 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0
...............................................................AAGGGATTCTGATGTTGGTCACA........................................................................................................ 23 0 1 120817.00 120817 21080 16812 2196 1060 8748 1589 7674 1412 5208 4110 6357 6320 465 4241 5330 951 1519 1058 2077 1180 8 3164 1512 41 1003 997 321 307 1596 644 264 923 741 887 944 47 742 705 71 661 87 296 418 10 0 647 342 600 481 8 0 394 0 3 284 287 0 149 7 24 117 122 35 125 11 97 34 62 93 124 44 64 26 6 50 65 80 6 19 39 9 56 1 21 27 20 51 32 25 7 27 14 1 28 8 17 11 11 28 18 13 8 9 10 11 5 8 9 0 8 3 0 5 1 5 1 11 9 2 5 0 13 1 3 0 2 7 6 1 2 0 0 1 1 0 4 0 0 3 1 1 0 1 2 1 0 0 0 1 0 1 0 1 0 0 1 1 0 1 0 2 0 0 1 0 1 0 0 0 0 1 0 0 0
...............................................................AAGGGATTCTGATGTTGGTCACAC....................................................................................................... 24 0 1 106115.00 106115 12365 8174 9108 6055 6865 2904 5654 2355 4999 3079 2314 2364 2945 3028 1542 1595 2042 1707 4028 1404 3 3918 2491 0 1321 1103 1061 522 645 75 431 420 1393 339 774 4 1414 1351 299 419 299 22 370 3 0 293 268 435 209 0 0 151 0 0 159 162 1 102 0 134 84 29 33 114 1 27 9 27 47 41 6 44 16 22 44 41 31 18 13 17 13 25 7 3 10 8 15 16 8 14 5 17 6 5 9 18 5 2 15 10 6 2 9 13 4 3 3 1 1 10 8 1 2 2 4 1 4 2 2 2 0 1 1 2 1 0 4 3 4 1 1 5 2 0 0 3 0 0 0 1 1 0 0 0 2 0 1 1 2 2 0 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................AAGGGATTCTGATGTTGGTCACACTC..................................................................................................... 26 0 1 93019.00 93019 24079 13764 6578 3850 2731 3003 2884 1337 3941 1959 2277 1379 3611 1790 669 1822 1863 1448 990 1809 3 99 582 37 1294 1140 2303 381 751 2 355 343 202 0 0 0 48 10 189 197 239 0 545 0 0 1 432 40 212 0 0 202 0 0 230 262 0 83 0 97 115 24 5 19 0 18 0 17 33 7 3 68 28 10 45 53 43 60 5 18 7 41 6 1 14 16 30 11 7 13 22 3 6 2 6 17 8 1 8 6 9 2 25 7 9 1 14 8 6 1 22 1 0 0 2 0 5 3 3 0 0 4 15 0 0 2 0 0 2 0 3 1 0 3 0 0 0 0 0 1 1 0 1 2 1 0 0 1 1 0 0 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...............................................................AAGGGATTCTGATGTTGGT............................................................................................................ 19 0 1 75063.00 75063 3336 822 19301 2804 2655 2689 2361 5280 1012 557 854 1269 1877 2168 635 1277 1503 1242 236 562 0 368 154 0 381 277 0 1286 400 1156 2249 7 223 654 350 1154 213 267 881 9 1036 417 70 3281 1219 144 60 44 129 1043 879 97 0 1959 41 29 0 22 1132 94 18 38 10 9 262 13 31 13 31 1 14 12 18 57 20 14 24 43 15 1 26 11 10 5 0 1 9 0 1 40 1 13 25 19 0 5 2 5 1 3 4 0 0 0 0 1 1 3 7 1 1 13 1 0 9 0 1 0 8 0 0 0 0 5 6 0 0 0 2 0 3 0 1 1 0 1 0 0 0 0 0 0 2 1 0 0 0 0 0 0 1 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................AAGGGATTCTGATGTTGGTC........................................................................................................... 20 0 1 51947.00 51947 8598 3767 10901 951 2436 2129 1785 2673 1142 1037 588 633 1749 1560 374 854 702 697 57 303 0 49 24 0 236 176 0 536 409 704 426 92 146 477 227 746 92 150 695 42 210 298 44 543 533 68 44 35 122 191 448 105 0 260 20 24 0 50 30 18 9 48 40 1 61 70 39 13 29 20 43 5 14 63 5 9 21 6 33 8 15 4 7 3 3 7 3 2 2 9 3 2 17 14 2 2 7 11 1 5 3 2 1 2 1 1 2 6 2 1 0 6 0 2 7 4 4 0 4 0 0 1 0 5 4 1 0 3 2 1 0 7 0 2 0 0 0 1 1 1 1 0 2 2 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................AAGGGATTCTGATGTTGGTCACACTCT.................................................................................................... 27 1 1 28903.00 28903 12784 5654 589 474 75 575 93 411 507 1483 1 0 262 118 0 321 320 240 37 561 0 0 39 0 363 355 1712 133 317 0 86 0 0 0 0 0 0 0 24 1 68 0 366 0 0 0 279 0 85 0 0 64 0 0 52 47 0 59 0 13 76 5 0 0 0 6 0 0 8 0 0 35 2 2 24 16 15 10 4 2 3 10 3 1 8 5 7 6 6 3 9 4 0 1 8 5 5 0 2 4 3 0 7 3 2 1 4 2 0 3 5 0 0 0 1 0 2 0 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................AAGGGATTCTGATGTTGGTCACACTATC................................................................................................... 28 3 1 14665.00 14665 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 3954 0 0 8590 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1271 0 0 0 842 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................AAGGGATTCTGATGTTGGTCAT......................................................................................................... 22 1 1 14167.00 14167 4 568 2949 361 268 1018 193 1626 179 455 55 57 500 152 19 475 445 419 32 145 5 30 23 0 93 92 2 364 104 492 288 273 9 274 274 167 9 3 218 65 127 148 13 11 10 59 10 57 28 6 5 19 0 1 8 3 0 27 0 15 5 68 90 7 12 59 94 59 5 9 77 7 42 32 2 1 2 5 7 31 3 1 11 33 17 17 0 13 10 6 0 11 17 4 12 3 2 19 0 1 1 8 0 0 8 9 0 3 5 1 0 7 4 17 2 8 0 4 2 4 0 3 0 2 1 1 2 0 1 4 2 1 4 3 0 0 3 7 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................AAGGGATTCTGATGTTGGTCACT........................................................................................................ 23 1 1 13084.00 13084 4472 2443 177 64 500 159 355 209 349 876 129 111 26 257 48 93 153 103 141 121 0 160 92 0 89 103 210 73 169 117 62 131 8 130 127 4 13 8 7 33 12 38 29 2 0 78 12 30 43 3 0 47 0 0 8 6 0 98 0 2 7 24 23 10 1 33 11 21 15 2 15 3 8 1 4 2 8 1 3 10 0 0 2 7 25 12 1 17 14 0 0 1 0 0 12 1 7 2 0 4 0 0 2 1 4 9 0 0 0 0 0 0 2 1 0 1 0 1 0 2 0 3 1 0 0 4 2 1 0 1 1 0 3 0 0 2 3 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...............................................................AAGGGATTCTGATGTTGGTCACACA...................................................................................................... 25 1 1 12645.00 12645 1936 778 618 1351 678 406 616 425 423 403 788 745 240 258 772 189 125 130 191 176 0 146 167 0 109 103 73 81 51 0 79 14 120 0 7 0 110 85 18 11 47 0 26 0 0 6 20 13 12 0 0 10 0 0 11 6 0 2 0 2 13 1 0 7 0 0 1 1 2 0 0 2 5 3 5 7 2 1 0 1 2 4 0 0 1 0 3 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................AAGGGATTCTGATGTTGGTCACAA....................................................................................................... 24 1 1 11424.00 11424 1606 990 380 625 1110 267 925 454 758 409 215 239 92 452 159 159 128 105 210 95 48 213 153 17 70 64 280 89 40 97 75 68 56 88 107 32 60 52 16 42 39 27 9 0 0 56 17 64 9 0 0 8 0 0 10 8 4 13 0 8 3 7 2 18 1 3 4 5 2 15 7 4 2 0 1 1 1 1 1 5 0 0 0 1 1 2 1 4 0 2 0 0 0 0 2 0 0 1 0 1 0 2 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................AAGGGATTCTGATGTTGGTCACATC...................................................................................................... 25 2 1 9709.00 9709 0 0 1 1 1 1 1 0 0 0 2 0 0 0 0 1 0 0 0 0 7391 0 0 1825 0 0 0 0 3 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 289 0 0 0 179 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................AAGGGATTCTGATGTTGGTAA.......................................................................................................... 21 1 1 8372.00 8372 9 194 2706 61 70 588 62 437 34 50 17 28 755 29 10 234 137 208 6 21 0 17 3 0 20 12 0 74 70 334 47 121 6 293 172 406 8 7 123 3 39 197 0 39 171 16 0 10 22 13 148 26 0 16 1 3 0 1 8 1 1 28 8 1 63 11 53 12 4 0 40 1 3 12 0 0 5 2 1 2 0 0 0 1 0 1 1 2 3 1 0 3 0 3 1 0 0 1 0 0 0 3 0 0 0 3 0 3 0 0 0 0 1 0 0 6 0 0 0 2 0 0 0 1 0 1 0 0 1 0 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................AAGGGATTCTGATGTTGGTCACACTCA.................................................................................................... 27 1 1 8147.00 8147 3683 2207 101 184 40 67 77 64 347 353 0 0 77 72 0 58 58 37 2 58 11 0 4 31 41 17 201 19 54 0 24 0 0 0 0 0 0 0 2 1 4 0 67 0 0 0 42 3 14 0 0 16 0 0 19 14 0 6 0 1 15 1 0 0 0 3 0 0 4 0 0 6 1 1 3 6 2 0 2 0 0 6 0 0 0 1 5 1 0 0 6 0 0 0 0 1 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................AAGGGATTCTGATGTTGGTCAA......................................................................................................... 22 1 1 7941.00 7941 2625 526 208 39 566 265 521 197 383 313 29 49 56 276 10 144 133 114 30 37 8 23 11 0 39 24 0 54 53 181 49 96 10 97 119 54 20 7 16 31 12 64 6 9 19 32 1 41 14 0 20 10 0 0 4 1 0 7 1 0 1 39 6 4 13 28 25 16 6 11 32 1 8 5 2 2 2 0 6 9 0 0 0 12 2 6 0 1 0 0 0 0 1 5 6 0 2 1 0 2 1 1 0 0 2 1 0 0 0 1 0 0 3 0 1 3 0 2 2 0 0 0 0 2 1 1 1 0 1 3 2 0 1 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................AAGGGATTCTGATGTTGGTCAATC....................................................................................................... 24 2 1 5680.00 5680 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4576 0 0 842 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 151 0 0 0 95 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................AAGGGATTCTGATGTTGGTCACACTT..................................................................................................... 26 1 1 5358.00 5358 846 392 410 475 137 180 148 221 208 392 30 21 117 92 12 107 86 93 142 207 0 5 111 0 157 160 190 45 30 0 38 13 10 0 0 0 4 2 14 24 37 0 28 0 0 0 29 3 15 0 0 7 0 0 5 9 0 13 0 4 9 4 2 1 0 2 0 1 3 2 2 9 6 3 2 5 2 3 0 0 4 1 0 0 0 3 0 2 4 3 5 0 0 0 0 1 2 0 1 0 1 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................ATTCTGATGTTGGTCACACT...................................................................................................... 20 0 1 5239.00 5239 3213 1732 4 5 12 1 7 2 9 10 7 2 3 5 7 0 0 0 3 8 0 1 2 0 3 4 0 0 21 0 1 1 2 0 0 0 0 4 1 75 0 0 33 0 0 0 15 0 7 0 0 4 0 0 5 4 0 1 0 0 6 0 5 0 0 0 1 0 0 0 0 2 0 0 4 4 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................TGGCGAACACAGAATCCATACT............................................................. 22 0 1 5190.00 5190 420 349 412 153 1 359 4 28 2 2 204 213 18 4 207 276 186 196 46 242 0 151 61 0 165 168 0 11 86 27 7 3 273 13 1 11 349 227 3 1 9 6 64 0 4 8 52 1 34 1 2 36 0 0 8 8 0 3 0 0 22 0 0 0 2 0 0 0 11 0 0 2 0 0 3 15 2 1 2 0 2 2 0 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 3 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................AAGGGATTCTGATGTTGGTCACAT....................................................................................................... 24 1 1 5032.00 5032 603 584 247 195 231 143 177 352 149 324 153 133 46 99 87 54 69 55 98 69 54 96 62 0 56 60 257 54 37 3 33 36 39 11 28 2 30 43 5 20 23 0 25 0 0 34 16 10 11 0 0 8 0 0 6 4 0 23 0 5 4 3 6 5 0 3 0 7 0 3 1 2 0 3 2 2 1 0 1 4 0 1 0 0 2 1 1 2 2 1 1 0 0 0 5 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................GATTCTGATGTTGGTCACACT...................................................................................................... 21 0 1 4990.00 4990 3627 1190 7 6 1 1 4 2 5 5 4 0 2 4 1 1 0 5 1 28 0 4 1 0 9 16 0 0 8 0 0 0 1 0 0 0 2 1 0 29 1 0 3 0 0 0 5 1 2 0 0 0 0 0 1 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................AGGGATTCTGATGTTGGTCACACT...................................................................................................... 24 0 1 4918.00 4918 630 665 229 441 173 117 107 114 132 89 82 102 56 66 61 62 33 34 197 126 0 74 190 0 93 106 44 26 110 3 35 52 8 5 15 0 9 10 8 170 31 0 51 0 0 18 43 48 40 0 0 18 0 0 4 4 0 9 0 13 15 4 18 19 0 1 5 1 9 0 1 10 0 0 7 5 7 8 0 2 6 1 17 2 2 4 0 1 2 0 0 0 0 0 0 2 0 1 0 0 1 0 2 0 0 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................TTCTGATGTTGGTCACACT...................................................................................................... 19 0 1 4579.00 4579 3334 648 17 20 5 1 11 9 10 10 1 1 24 19 0 3 1 3 1 125 0 3 1 0 87 150 0 0 24 0 2 0 2 0 0 0 0 0 2 1 3 0 13 0 0 0 17 0 10 0 0 9 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 2 0 0 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................AAGGGATTCTGATGTTGGTA........................................................................................................... 20 1 2 4516.50 9033 0 212 1130 61 77 271 73 340 31 48 118 144 191 36 89 150 137 121 19 39 0 40 14 18 22 17 0 63 55 298 67 21 10 230 176 398 9 23 51 9 36 154 1 369 329 13 1 11 18 2719 229 11 0 116 0 4 0 3 15 4 1 17 7 1 67 7 19 4 6 1 12 1 3 5 0 0 5 2 3 3 1 0 0 1 0 3 0 1 0 4 0 4 0 1 1 0 0 2 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 1 0 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................AAGGGATTCTGATGTTGG............................................................................................................. 18 0 2 4285.00 8570 456 85 135 17 314 44 314 174 215 119 53 160 15 320 46 13 41 33 141 28 45 162 126 6 19 26 0 33 31 187 31 46 1827 120 66 123 565 1558 3 40 12 48 10 103 71 50 10 5 7 31 46 4 0 90 4 1 11 1 167 1 6 3 13 5 22 7 10 17 2 10 9 4 3 0 2 0 2 0 2 7 3 1 0 7 1 3 0 1 0 1 0 2 0 6 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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...............................................................AAGGGACTCTGATGTTGGTCA.......................................................................................................... 21 1 1 139.00 139 5 1 9 0 9 4 9 2 7 11 1 0 2 3 0 1 6 6 0 0 0 0 1 0 0 0 0 2 0 5 0 3 0 8 7 9 0 0 2 0 1 6 1 0 4 0 0 1 0 0 5 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................AAGGGATTCTGATTTTGGT............................................................................................................ 19 1 2 138.00 276 25 0 128 10 2 0 4 4 0 2 2 6 15 0 3 1 0 0 0 0 0 2 0 0 0 0 0 0 3 7 1 0 0 3 1 8 0 0 6 0 0 3 0 8 7 3 0 0 1 4 2 0 0 5 0 0 0 0 0 0 0 0 0 0 2 0 0 1 0 0 1 0 0 2 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................AAGGGATTCTGATGTTGGACACAC....................................................................................................... 24 1 1 138.00 138 26 24 3 1 3 0 3 1 7 1 3 3 3 2 3 3 6 2 3 0 0 1 1 0 3 0 0 0 1 0 1 1 1 0 1 0 3 4 0 2 2 0 2 0 0 3 4 3 0 0 0 0 0 0 3 2 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................AAGGTATTCTGATGTTGGT............................................................................................................ 19 1 1 137.00 137 0 1 75 1 4 0 1 3 1 2 0 0 4 1 0 1 1 0 0 0 0 2 0 0 0 0 0 1 0 6 3 0 0 2 3 1 0 0 6 0 0 2 0 3 2 0 0 0 0 2 1 0 0 4 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................AAGGGATCCTGATGTTGGTCAC......................................................................................................... 22 1 1 137.00 137 1 1 7 2 10 3 13 3 12 30 2 2 2 8 1 2 2 2 0 1 0 0 0 0 1 0 1 7 0 9 1 1 2 1 1 1 0 0 1 0 0 0 0 3 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................AAGGGATGCTGATGTTGGTCAC......................................................................................................... 22 1 1 135.00 135 1 0 10 1 1 1 0 0 0 3 0 0 0 0 0 3 0 0 0 1 0 0 0 0 0 0 0 3 0 33 0 1 2 19 10 10 0 1 0 0 0 12 0 2 2 0 0 2 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 3 0 0 0 5 0 4 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................AAGGGATTCTGAGGTTGGTCA.......................................................................................................... 21 1 1 134.00 134 0 1 5 0 0 14 1 0 0 0 0 0 2 0 0 74 6 3 0 1 0 0 0 0 0 0 0 0 0 4 0 0 0 2 1 8 0 1 1 0 0 1 0 0 4 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................AAGCGATTCTGATGTTGGTCAC......................................................................................................... 22 1 1 134.00 134 6 2 14 9 6 1 2 2 5 19 2 0 6 7 0 1 4 2 0 0 0 2 0 0 2 0 0 5 0 5 0 0 0 5 5 1 2 0 2 1 0 6 1 0 1 1 0 1 1 0 0 1 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................AAGGGATTGTGATGTTGGTCACACT...................................................................................................... 25 1 1 134.00 134 13 9 7 8 1 2 4 6 2 2 4 3 0 3 2 1 1 2 3 11 0 0 3 0 20 10 1 0 3 0 5 0 2 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TGGTCAGAGAACGACGGGACGTCGTTCCGATCTTCGGACACACTTGAGAACGGTTTTAGTCTCTTCCCTAAGACTACAACCAGTGTGAGGTTCTCAAAATTTTACTCACCGCTTGTGTCTTAGGTATGAGACGAATACCGGATTCAGTTACCTAGGACTGGGAATGACCTCTCGGGAGGGACCGCACGAG
**********************************************..((((.((.(((((...((((((((.((((.(((((((((...))))..........))))).))))))))))))...))))).)).))))....************************************************ 		Read size # Mismatch Hit Count Total Norm Total GSM361430
brain		 GSM361408
brain		 GSM361407
brain		 GSM361415
brain		 GSM361394
brain		 GSM361399
brain		 GSM361398
brain		 GSM361395
brain		 GSM361402
brain		 SRR206940
brain		 SRR248524
Thy1+_spermatogonia		 SRR391853
embryo		 SRR553582
brain		 SRR345199
brain		 SRR345200
brain		 SRR1509748
spermatozoa		 SRR037902
testes		 SRR037925
embryo		 SRR039153
muscle		 SRR039185
fibroblast		 SRR073954
blood		 SRR345198
brain		 SRR391845
embryo
...............................................................TTCCCTAAGACTACAACCAGT.......................................................................................................... 21 0 1 109.00 109 74 11 10 10 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTCCCTAAGACTACAACCAGTGT........................................................................................................ 23 0 1 42.00 42 19 13 4 4 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTCCCTAAGACTACAACCAGTGTGA...................................................................................................... 25 0 1 28.00 28 4 15 2 2 2 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTCCCTAAGACTACAACCAGTG......................................................................................................... 22 0 1 28.00 28 15 8 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTCCCTAAGACTACAACCA............................................................................................................ 19 0 1 24.00 24 17 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTCCCTAAGACTACAACCAGTGTG....................................................................................................... 24 0 1 20.00 20 3 6 2 2 1 1 3 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTCCCTAAGACTACAACCAGTA......................................................................................................... 22 1 1 14.00 14 12 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTCCCTAAGACTACAACCAGTGTGC...................................................................................................... 25 1 1 14.00 14 0 0 7 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTCCCTAAGACTACAACCAG........................................................................................................... 20 0 1 13.00 13 8 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTCCCTAAGACTACAACCAGTGA........................................................................................................ 23 1 1 12.00 12 8 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTCCCTAAGACTACAACCAGTGTGAG..................................................................................................... 26 0 1 12.00 12 1 1 4 4 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTCCCTAAGACTACAACCATT.......................................................................................................... 21 1 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTCCCTAAAACTACAACCAGTGTG....................................................................................................... 24 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTCCCTAAGAATACAACCAGTGTGAGA.................................................................................................... 27 2 1 2.00 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTCCCTAAGACTACAACCAGTT......................................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTCCCTAAGACTACAACCAGTGTGAA..................................................................................................... 26 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTCACTAAGACTACAACCAGT.......................................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TCCCCTAAGACTACAACCAGT.......................................................................................................... 21 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTCCCTAAGACTACAACCAGTGTGATC.................................................................................................... 27 2 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTCCCTACGACTACAACCAGTGTG....................................................................................................... 24 1 1 2.00 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................CTCACCGCTTGTGTCTTAGGTAT............................................................... 23 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTCCCTAAGACTACAACCACT.......................................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTCCCTAAGACTACAACCAGTGTGAGC.................................................................................................... 27 1 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTCCCTAAGACTACAACCAT........................................................................................................... 20 1 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTCCCTAAAACTACAACCAGTGTGA...................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTCCCTAACACTAAAACCAGTGT........................................................................................................ 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTCCTTAAGACTACAACCAGTGT........................................................................................................ 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TCCCCTAAGACTACAACCAGTGTGAG..................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTCCCTAAAACTACAACCAGTG......................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTCCCAAAGACTACAACCAGTG......................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................CTCACCGCTTGTGTCTTAGGTA................................................................ 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTCCCTAACACTACAACCAGTGT........................................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTCCCTAATACTACAACCAGTGTG....................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTCACTAAGACTACAACCAGTGT........................................................................................................ 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTCCCTAAGACTACAACCAATA......................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTCCCTAAGACTACAACCAGTTC........................................................................................................ 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTCCCTAACACTACAACCAGTGC........................................................................................................ 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTCCCTAAGACAACAACCAGTG......................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TCACCGCTTGTGTCTTAGGTAT............................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................TTCCCTAAGACTACAACCAATG......................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TACCCTAAGACTACAACCAGT.......................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTCCCTAAGACTACAACCAGTGAA....................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TCCCCTAAGACTACAACCAGTGTGA...................................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTCCCTAATACTACAACCAGTGT........................................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTCCCTAAAACTACAACCAGT.......................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTCCCTCAGACTACAACCAGT.......................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTCCCTAAGAATACAACCAGTGA........................................................................................................ 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTCCCTAAAACTACAACCAGTGT........................................................................................................ 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TACCCTAAGACTACAACCA............................................................................................................ 19 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTCCCTAAGACTACAAACAG........................................................................................................... 20 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTCACTAAGACCACAACCAGTGT........................................................................................................ 23 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTCCCTAAGACTACAACC............................................................................................................. 18 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TCCCCTAAGACTACAACCAGA.......................................................................................................... 21 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................ACCTCTCGGGAGGAGCCGC..... 19 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.GGTCAGAGAATGACGGGA........................................................................................................................................................................... 18 1 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................CTAGGACTCGCAATGACCGC................... 20 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................CGAGCATCGGACACACTT................................................................................................................................................. 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.....AGAGATCGACGGGCCGTTGTT.................................................................................................................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................ACTACCGGATTGAGTTACC...................................... 19 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................CCACCGCTTGTATCTTAG................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................................TGTCTTAGGGATGCGACGAT....................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.......................................TCACTTGACCACGGTTTTAGT.................................................................................................................................. 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................CACGGGAGGGACCGCA.... 16 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
mm10 chr12:109742359-109742548 + mmu-mir-541 ACCAGTCTCTTGCTGC-CCTGCAGCA----------AGGCTAGAAG--CCTGTGTGAACTCTTGCCAAAATCAGAGAAGGGATTCTGATGTTGGTCACACTCCAAGAGTTTTAAAATGAGTGGCGAACACAGAATCCATACTCTGCTTATGGCCTAAGTCAATGGATCCTG-----------ACCCTTACTGGAGAGCCCTCCC--TGGCGTGCTC----------
cavPor3 scaffold_111:1116191-1116381 + GCTGGCCTCTTGCTCCAACCATAGCC----------AGGCTTGGAG-AGCTTTCTGAACCAATGCCAATGTCAGAGAGAGGATTCTGCTGCCGGTCCCACTCCAAAGTTTATAAAATGGGTGGTGGGCACAGAATCCGGACTCTGCCTGTGGCATACATCATCTGGTCTGG-----------ATCCTCACTGGCCACCCCGCTG--GGTCGA-TGT----------
dipOrd1 Unknown GC----CCCGTGCTCCAGGCCTGGCA----------AGACTTGGAG-GGCGTGCTGAGCTCATGCCAAAGTCAGGGAAAGGATTCTGCTGTCGGTCCCACTCCAAAGTTCACAAAATGGGTGGTGGGCACAGAATCCAGACTCTGCTTATGGCTTATGTCGTC-------G-----------ATCCTCGCCGGCCAGCACTCCT--TGGTGTGCTGCGGGTTGGGG
hetGal2 Unknown ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ochPri2 scaffold_7053:50706-50887 + GCTGGCACCTCACAGTTGGCGGAGTG----------AGGCTTGGAGGGGCTTCCCGAAGTCGTGCCAACGTCAGGGAAAGGATTCTGCTGTCGGTCCCACTCCAAAGTTCACAAAATGGGTGGTGGGCACAGAATCCAGACCCTGCTTGTGGCATCTGTCGTCTGGCCCCG-----------C--CCCCGCGGCCAGCCCG----------T-GGT----------
oryCun2 chrUn0352:152018-152220 + GCTGGCGTCTCGCTCTCATCATAGCCAGGCCTGGGGGGGG-GGGGG-GGCGTTCTGAACTCGAGCCAACGTCAGGGAAAGGATTCTGCTGTCGGTCCCACTCCAAAGTTCACAGAATGGGTGGTGGGCACAGAATCCAGACTCTGCTTGTGGCACACGTCGTCTGGTCCCGGCCTGGCCCCGGCCCTCCGCGGCCAGCCGG----------T-GGC----------
rn5 chr6:143054962-143055153 + rno-mir-541 ACCAGTCTCTTGCC-GAGCTACAGCA----------AGGCTAGAAG--CCTGTGTGAACTCTTGCCAAAATCAGAGAAGGGATTCTGATGTTGGTCACACTCCAAGAATTTTAAAATGAGTGGCGAACACAGAATCCATACTCTGCTTATGGCCTAAGTCAATGGATCCTG-----------ACCCTTACTGGATAGCCCTCTCTATGACGTGCTT----------
speTri2 JH393414:4808409-4808595 + GCTGGCCTCTTGCTCCAGTAGCAGCA----------AGACTTCGAG-GGCTTTCTGAACTCATGCCAACGTCAGGGCAAGGATTCTGCTGTCGGTCCCACTCCAAAGTTCACAAAATGGGTGGTGGGCACAGAATCCAGACTCTGCTTGTGGCTTATATCGTCTGACCCCA-----------GCCCTCTCCGGCTAGCCAACTGC------T-TGT----------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
mm10
ACCAGTCTCTTGCTGC-CCTGCAGCA----------AGGCTAGAAG--CCTGTGTGAACTCTTGCCAAAATCAGAGAAGGGATTCTGATGTTGGTCACACTCCAAGAGTTTTAAAATGAGTGGCGAACACAGAATCCATACTCTGCTTATGGCCTAAGTCAATGGATCCTG-----------ACCCTTACTGGAGAGCCCTCCC--TGGCGTGCTC----------SizeHit CountTotal NormTotalSRR042455
blood		SRR042459
blood		SRR042460
blood		SRR069834
blood		SRR073954
blood		SRR073955
blood		SRR525238
Blood		SRR525237
Blood		SRR042456
bone marrow		SRR042457
bone marrow		SRR042461
bone marrow		SRR042462
bone marrow		GSM317181
brain		GSM317182
brain		GSM361394
brain		GSM361395
brain		GSM361398
brain		GSM361399
brain		GSM361402
brain		GSM361407
brain		GSM361408
brain		GSM361415
brain		GSM361430
brain		GSM510444
brain		SRR037904
brain		SRR037905
brain		SRR037906
brain		SRR037907
brain		SRR038741
brain		SRR038744
brain		SRR039610
brain		SRR042477
brain		SRR060845
brain		SRR206939
brain		SRR206940
brain		SRR206941
brain		SRR206942
brain		SRR345196
brain		SRR345197
brain		SRR345198
brain		SRR345199
brain		SRR345200
brain		SRR345201
brain		SRR345202
brain		SRR345203
brain		SRR345204
brain		SRR345205
brain		SRR345206
brain		SRR345207
brain		SRR037919
embryo		SRR037920
embryo		SRR037921
embryo		SRR037922
embryo		SRR037923
embryo		SRR037924
embryo		SRR037925
embryo		SRR037926
embryo		SRR037927
embryo		SRR037928
embryo		SRR037929
embryo		SRR037930
embryo		SRR391845
embryo		SRR391846
embryo		SRR391847
embryo		SRR391848
embryo		SRR391849
embryo		SRR391850
embryo		SRR391851
embryo		SRR391852
embryo		SRR391853
embryo		SRR116846
epididymis		GSM566419
fibroblast		GSM566420
fibroblast		SRR039183
fibroblast		SRR039184
fibroblast		SRR039185
fibroblast		SRR039186
fibroblast		SRR042475
fibroblast		SRR390297
fibroblast		SRR390298
fibroblast		SRR042484
salivary gland		SRR042476
heart		SRR095853
heart		SRR095855BC1
heart		SRR095855BC10
heart		SRR095855BC2
heart		SRR095855BC3
heart		SRR095855BC4
heart		SRR095855BC5
heart		SRR095855BC6
heart		SRR095855BC7
heart		SRR095855BC8
heart		SRR095855BC9
heart		SRR065052
jejunum		SRR065053
jejunum		SRR065054
jejunum		SRR065055
jejunum		SRR065056
jejunum		SRR042480
kidney		SRR040488
liver		SRR042479
liver		SRR065045
liver		SRR065046
liver		SRR065047
liver		SRR065048
liver		SRR065049
liver		SRR065050
liver		SRR077864
liver		SRR077865
liver		SRR077866
liver		SRR042478
lung		SRR042468
lymph		SRR042469
lymph		SRR042470
lymph		SRR042472
lymph		SRR042473
lymph		SRR039152
muscle		SRR039153
muscle		SRR039154
muscle		SRR042483
muscle		SRR014234
ovary		SRR037896
ovary		SRR037897
ovary		SRR037898
ovary		SRR037899
ovary		SRR042486
ovary		SRR042481
pancreas		SRR065058
pancreas		SRR065059
pancreas		SRR042482
skin		SRR042463
spleen		SRR042465
spleen		SRR042466
spleen		SRR042467
spleen		SRR042471
spleen		SRR042487
spleen		SRR059768
spleen		SRR059769
spleen		SRR059770
spleen		SRR059771
spleen		SRR059772
spleen		SRR059773
spleen		GSM475281
testes		GSM509275
testes		GSM509279
testes		SRR014231
testes		SRR014235
testes		SRR014236
testes		SRR028731
testes		SRR037900
testes		SRR037901
testes		SRR037902
testes		SRR037903
testes		SRR042485
testes		SRR051939
testes		SRR051940
testes		SRR069809
Type_A_spermatogonia		SRR069810
pachytene_spermatocytes		SRR069811
round_spermatid		SRR248523
Thy1+_spermatogonia		SRR248524
Thy1+_spermatogonia		SRR248525
Thy1-_somatic_testes_cells		SRR248526
Thy1-_somatic_testes_cells		SRR248527
spermatogonia		SRR363956
testes		SRR363957
testes		SRR363958
testes		SRR363959
testes		SRR363960
testes		SRR363963
testes		SRR363964
testes		SRR553582
brain		SRR553583
cerebellum		SRR553584
heart		SRR553585
kidney		SRR553602
sertoli_cells		SRR553603
spermatids		SRR553604
spermatocytes		SRR553586
testes		SRR042464
thymus		SRR059765
thymus		SRR059766
thymus		SRR059767
thymus		SRR032476
uterus		SRR032477
uterus		SRR1509747
oocyte		SRR1509748
spermatozoa		SRR1509749
zygote		SRR1509750
spermatogonia		SRR1509751
foetal_primordial_germ_cells		SRR1647947
Dgcr8_WT_leptotene_zygotene_spermatocytes		SRR1647948
Dgcr8_cKO_leptotene_zygotene_spermatocytes		SRR1647949
Dicer_WT_leptotene_zygotene_spermatocytes		SRR1647950
Dicer_cKO_leptotene_zygotene_spermatocytes		SRR1647951
Dgcr8_WT_pachytene_spermatocytes		SRR1647952
Dgcr8_cKO_pachytene_spermatocytes		SRR1647953
Dicer_WT_pachytene_spermatocytes		SRR1647954
Dicer_cKO_pachytene_spermatocytes
............................................................................AAGGGATTCTGATGTTGGTCACACT.............................................................................................................................251546350.005463501100692710511246400000000002954141741950174618385145700133126596171684958917219238201525703001169133015662961205515617660193281293082264921009169125381097417204183511881884111268874421323117727673828491319653930617504422120531883861984339411917283020274600212000563013518042556615118300217403000001711513661051513740628131366196120148261640000000036144126001105713032616321261000014460000047439453402740
............................................................................AAGGGATTCTGATGTTGGTCAC................................................................................................................................221216442.002164420200410001220153500000000001390583353919833084546356718491248533310070549961263111441196166155919444095275415514485036640914022150114221545721467550946112351589881107730823362150116694538578441052890513375202511396012693012236036017104172214111299356031291554232823631102290003191190371162114154135251504101232131100091135100075160144271111872495311212404197000000029779612311799391413446180000879500000442162114
............................................................................AAGGGATTCTGATGTTGGTCA.................................................................................................................................211207077.00207077000012320400340000000000014645236748712212271811134713055764909109244395461110210821055271329270618022504195423515281511614847106491148443652301851663143151761514311523821740041494030653579115231903247436284901111151141249552223101418164155426363925103317231801901142000025371077214924129624537168601633419020004811500039163709404690616852034984511200000002818851731497161391739322200107084000001167160014
............................................................................AAGGGATTCTGATGTTGGTCACA...............................................................................................................................231120817.0012081701002781071012500000000000159680394481939971180100392364795115891058151970108304794464488711296653424181175628428751175064137417427053164207715125330632063572600520842417674874860016812210803420512000011151015541109322725811201811149800001000351911362624412297111240006611310000281132111001193112140187264307141224000000021964657161060967000021390008411048283219
............................................................................AAGGGATTCTGATGTTGGTCACAC..............................................................................................................................241106115.0010611500005300401114500000000006453115120947110314041321420293159529041707204200300047747533912241268370842515916215184444613931414135139184028249115422364231416114999302856546865435817412365910402111176022023230792161089481051022002110003313013027629272410004190201000511106122004100001714299431522235513400000009108294529922605513181400003170013013310158019
............................................................................AAGGGATTCTGATGTTGGTCACACTC............................................................................................................................26193019.00930190001221400002191000000000075143202212331140180912943431182230031448186300000000200053432545115412302623017456892024810999905826691379227728113941179028842731401376424079000213001666000001019593111476916688320000000055040217324181700019700000002112303110058030233223935538113379700000006578361118910385076013000011800033770182201525
............................................................................AAGGGATTCTGATGTTGGT...................................................................................................................................19175063.007506300101100010900000000000400249712931277562381714412772689124215031132879328110431959121911543501156654262417146070181141299520124223213267368236154635126985418001012216823612655448223336310092862137102501100105570001001322200000000010150001131438135100091500000190000000130100133210362249128652809400000001930118778815728042643400000510000001111000
............................................................................AAGGGATTCTGATGTTGGTC..................................................................................................................................20151947.00519470000320000017000000000040921105122291763032369268854212969770230448543191260533746227704477612989444494202432553146921504957243746335881411114215601785243635376785983910724406271700002101037023221757502100040004033013213434870112010042050000014110000046120120221042653626731800000001090117496956395115690000380000020110001
............................................................................AAGGGATTCTGATGTTGGTCACACTCT...........................................................................................................................27128903.00289030000940000000000000000031715648583555613630032157524032000000000000016279366761052477524353000037390012005071189375056541278400010000003000010101483068682545590000000000402100056000001000000010017120000220000400688613341113000000058926224247431030001120000031325017
............................................................................AAGGGATTCTGATGTTGGTCACACTATC..........................................................................................................................28114665.001466500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000127168423954859000000000
............................................................................AAGGGATTCTGATGTTGGTCAT................................................................................................................................22114167.001416700000000200710000000000104219285921459327359475101841944505116110167274492274121481101351830327199330322319575542001791521932685756849440202117511170443179445541317101281712278000180009070300597768591997006502010004002000003030111211272883641626150000000294950021832361356000133310005000100000
............................................................................AAGGGATTCTGATGTTGGTCACT...............................................................................................................................23113084.001308400000011200100000000000016984743151031218913178931591031530023004127117130138212297086114308138160141924811112980034925735550030244344721110000000020023319287611725141241247980000010002330310211524332200033000000000021010000000041101262732092000000017726716401000007100000012000012
............................................................................AAGGGATTCTGATGTTGGTCACACA.............................................................................................................................25112645.00126450000000000070000000000051210122103176109146189406130125000000070000720261341163252012011085146191167772745788500423258616678137781936100010000000000000040300100000020000000000000101010000001100000000007300000000000004779814252000000061824018313512100000010000001000011
............................................................................AAGGGATTCTGATGTTGGTCACAA..............................................................................................................................24111424.00114240000022000018000000000004018926495706856159267105128000000321079788127117930108101405660522132101531592392152007584529251110649901606400000001000000000040904102021013200000000210000577311500042010000000028000000000000103975894548000000038092160625012000015004481700000000
............................................................................AAGGGATTCTGATGTTGGTCACATC.............................................................................................................................2519709.00970900000000000000000000000300000000011000000000000000000000001002010000020000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000289101797391182500000000
............................................................................AAGGGATTCTGATGTTGGTCACACTCA...........................................................................................................................2718147.0081470000600000000000000000054216144175841005867375800000000000064267156191451361000024000100347727740322073683000000000000000000035301000011260000000000200100013000001000000000020100010000000004241964100000001017721184000000000000113101000000
............................................................................AAGGGATTCTGATGTTGGTCAA................................................................................................................................2217941.00794100000000100400000000000532101462437399632144265114133120900195411918197136421610410021110207233011104929800383276521566415262625253010210000103100103132120626227100003000660000163239281110103102000005000000000020102112495419700000000208561653900000001290008001100000
............................................................................AAGGGATTCTGATGTTGGTCACACTT............................................................................................................................2615358.005358010051000001000000000003027153160207157130107180938600000000000052928915901291104251421111221306002089214813733928460000001000000000000392020400302130000000002000001242020002400000000001900000000000000373845221400000004101171434754330000000000020010010
.................................................................................ATTCTGATGTTGGTCACACT.............................................................................................................................2015239.005239000000000000000000000002104704831001000000000000004153360540142120413272700095712017323213100000000000000000010000100000100000000050000000000000075000000000000000000000000010200000000431050000000000000000000000
........................................................................................................................TGGCGAACACAGAATCCATACT....................................................................................2215190.0051900000110000000000000000086236341116824216538276359196186020104111271326155264222881132027334922715146612072132040002441134942000000000000000000002000000000300000000002001000000000010000000001000001030010009711280000000041218301532100000000000000000000
............................................................................AAGGGATTCTGATGTTGGTCACAT..............................................................................................................................2415032.00503201001000000510000000000371811060695636345414355690000002283110021625416410220393043969862871331530001499917723110584603000000000000010010032412225111023000000000610000713303000200100000000257000000000101023335435250000000247465319500100000400054000000000
................................................................................GATTCTGATGTTGGTCACACT.............................................................................................................................2114990.004990000032000000000000000008002016289001150000000000000253301010000121411104100544111190362700000000000000000005000000000000000000000000000000000029000000000000000000000000100200000000720060000000000000000000000
.............................................................................AGGGATTCTGATGTTGGTCACACT.............................................................................................................................2414918.0049180000000000019000000000001107184091061269352186211734330000000153500543511514402710189107419719061102820001326610717348665630500000101017000000008911220040090000000001800000114110000170000050001144000001000000031352611413000000022956804416800000220000000000012
..................................................................................TTCTGATGTTGGTCACACT.............................................................................................................................1914579.004579000000000000000000000002429102150125870031310000000000000171320100301120031101100010191150648333400000000000000000001000000000000000000000000000000000001000000000000000000000000320900000000172420200000000000000000000000
............................................................................AAGGGATTCTGATGTTGGTA..................................................................................................................................2024516.5090330000000000010000000000055511186173922211315027112113715229369271911632939817629823067154011100400010109234019148914411830031367377112120191020000010000000004801001230030000000007301104121772100090100000100000000000004013667633404000000011301915156112400001300001800000000
............................................................................AAGGGATTCTGATGTTGG....................................................................................................................................1824285.0085700000000000050000000000031247226281946501344334116746103319071123661871202248010106141002401827565155816214112646160533002153203143145854561010100000000020200011901102030010000010001320000179370100004000010006000000000000120012313317410000000135153017301000077001145600010000
............................................................................AAGGGATTCTGATGTTGGTCACACTA............................................................................................................................2614014.004014000000000000000000000001901043643302144933237000000000000212197072002506101665122284600032512622517814598710000000001100000000248100000000500000000001010001000000070000000000950000000000000161935143200000001517391357011000010001172000020000
............................................................................AAGGGATTCTGATGTTGGTCACACTAT...........................................................................................................................2713999.003999000020000000000000000003021442644400385230320000000000004111861380011000000300021096192060551107400000000000000000004400000000113000000000000000000010000100000000000193000000000010023413824550000000122498065701100000000401600000000
.................................................................................ATTCTGATGTTGGTCACA...............................................................................................................................1813547.00354700000000000000000000000183105620000000000000000000006870000021002000000000010282615044629450000000000000000000100000000000000000000000100000000000000000000000000000000000010000000000310000000000000000000000000
...................................................................................TCTGATGTTGGTCACACT.............................................................................................................................1812631.00263100000000000000000000000400002031180020330000000000000332000000000010121100005322019923060000000000000000000300000000000000000000000000000000000000000000000000000000000001100000000340070000000000000000000000
...............................................................................GGATTCTGATGTTGGTCACACT.............................................................................................................................2212218.00221800000000000000000000000400002520001000000000000001420000000000003222000000022074214350000000000000000000000000000000000000000000000000000000000000000010000000000000000100000000100040000000000000000000000
..............................................................................GGGATTCTGATGTTGGTCACACT.............................................................................................................................2311985.0019850000000000000100000000012002056300111100000000000003500010101011011401100010200360154400000000000000000003000000000000000000010000000000000020000000000100000000000000100000000004100100100000000000000000000
............................................................................AAGGGATTCTGATGTTGGTCACAAA.............................................................................................................................2511875.0018750000100000010000000000040100362421734128000000013110102500010000061037209294927000168105232208719000000000000000000000118000000100100000000000000010110000090000000100990000000000000101536129000000003012202170000000110000100000000
............................................................................AAGGGATTCTGATGTTGGTCACACTCATC.........................................................................................................................2911868.0018680000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000068220341143400000000
............................................................................AAGGGATTCTGATGTTGGTCT.................................................................................................................................2111838.00183800000000000000000000000223598613121246210740320310013370355951238020104001100300333313300182232252504700001002050001000044020110300110000000001400003910180000010000000200000000000000001535402401000000039366395350010000300000000000000
................................................................................GATTCTGATGTTGGTCA.................................................................................................................................1721795.0035900000000000000000000000000000030002184000000000000000000000000000000010000000008634730000000000000000000000000000000000000000000000000000000000000000000000000000000202400000000400000000000000000000000000
............................................................................AAGGGATTCTGATGTTGGTCACATA.............................................................................................................................2511697.0016970000000000000000000000010000210104443000000000000000010000000220011614100006214140110000000000000000000160000000000000000000000000000000000000000000007000000000000004518000000008001500000000048019113733400000000
.............................................................................AGGGATTCTGATGTTGGTCACACTCT...........................................................................................................................2611582.001582000000000000000000000008024098820220100000000000001273030000000001461010004396035136100000000001000000001300000001120000000000000000000000001000000000010000000000000005213100000003210240000000000000000000000
............................................................................AAGGGATTCTGATGTTGGTCAAT...............................................................................................................................2311445.001445000010000001000000000008051011250132314240000000003001010010001101002104572003935426262096782000000000000120010340010211012000000000210000325500000201000000001000000000000003696510000000243202100000000200028200000000
.............................................................................AGGGATTCTGATGTTGGTCAC................................................................................................................................2111391.00139100000000000100000000000313810139353925518261780710062010207113071040000011110022283105000713262711554213000006016290000000033000001100400000000091000012262200017000010001100000000000020471443100000001102262610000000310000000000000
.............................................................................AGGGATTCTGATGTTGGTCACA...............................................................................................................................2211326.0013260000000010030000000000043016137721263276275000000614720132262013110200111831281318152001815414713135523900000000010000101219011100010510000000040001032321200018000020001100000130100210135121000000010110100100000030000000010000
................................................................................GATTCTGATGTTGGTCACA...............................................................................................................................1911248.0012480000100000000000000000060000312000001000000000000021100300100000010000000258304617370000000000000000000700000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000
...................................................................................TCTGATGTTGGTCACACTC............................................................................................................................1911210.0012100000000000000000000000010100282927000000000000000000110000000000000000000000140004710640000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000121010000000000000000000000
............................................................................AAGGGATTCTGATGTTGGTCAATA..............................................................................................................................2411192.001192000000000000000000000000000000000010000000000010000000000000000000000000042001100000000000000000000100000000000000000000000000000000000000000000000000000000000000100000000000000000000003141793918900000000
............................................................................AAGGGATTCTGATGTTGGTCACACTCAT..........................................................................................................................2811173.00117300001000000000000000000001206199001424131000000000000001214801400001000000000200310003770000000000000000000017000010020020000000000000000000000000000000000013001010000000004131057300000004419201800000000003009000000000
............................................................................AAGGGATTCTGATGTTGGTCACACTTA...........................................................................................................................2711026.00102600000000000000000000000000000110000000000000000000421000000200000000000001331105786200000000000000000005200000000120000000000000000000000000000000000090000000000000010000000000000060000000002004100000000
.................................................................................ATTCTGATGTTGGTCACACTCT...........................................................................................................................221949.009490000000000000000000000010110010000000000000000000269200000000110220310000000001337780000000000000000000100000000000000000000000000000000000000000000000000000000000000200000000100000100000000000000000000
...............................................................................GGATTCTGATGTTGGTCACAC..............................................................................................................................211944.00944000000000000000000000001020032300000000000000000000010000000000110000000010110528710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100030000000000000000000000
................................................................................GATTCTGATGTTGGTCACAC..............................................................................................................................201925.009250000000000000000000000021000474537003010000000000000001101000010000000000000542301096300000000000000000000600000000000000000000000000000000000000000000000000000000000000500000000990020000000000000000100000
.............................................................................AGGGATTCTGATGTTGGTC..................................................................................................................................191909.0090900000100000000000000000131240435311200057609301110000000000000001000020000187101774800000020116000000001000110000000000000001010010000000020000000000000000000000000045000000001324040000000010000000000000
..............................................................................GGGATTCTGATGTTGGTCACACTCT...........................................................................................................................251899.00899000000000000000000000002000001000000000000000000000000000000000000000000000000818150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................AAGGGATTCTGATGTTGGTCAAC...............................................................................................................................231894.008940000000000006000000000000010000000000000000310100000000000000100000030011707110447940000000000000000000100000000000000000000000000000000001000000000000000000000000000300000000100020000000000005000000000
..................................................................................TTCTGATGTTGGTCACA...............................................................................................................................173892.00267600000000000000000000000000003284102720012200000000000000000000000000000000000000000027313140000000000000000000000000000000000000000000000000000000000000000000000000000000440170000000016301020000000000000000000000
............................................................................AAGGGATTCTGATGTTGGTCACACTAA...........................................................................................................................271866.008660000000000000000000000010100022002525000000010000051021710011000000100000094161017131900000000000100000000137000000000000000000001000000020000040000000000650000000000100063220000000063008300000000000002500000000
............................................................................AAGGGATTCTGATGTTGGTCACACG.............................................................................................................................251781.007810000000000020000000000012002171252019362470000000000003141010001009421416243251580003120314031700000000000000000000250001000000000000000100000010001000200000000006000000000000024434000000006429201130000000000000000000000
.............................................................................AGGGATTCTGATGTTGGTCACAC..............................................................................................................................231766.0076600000000000300000000000222971131019303123312700000011335011570011000002331559331240001915343815660400000000070000000022003200000100000000070001011252100014000010001130000000000000357280000000037630640110000200000000000000
......................................................................................................................AGTGGCGAACACAGAATCCATAC.....................................................................................231752.0075200000000000200000000000958007664110522000000020100824384311710480435742553619346599000528331000000000000000000000000000000010000000000000201000000005000000021100000000001100334160000000021100273000000000000000000000
.............................................................................AGGGATTCTGATGTTGGTCA.................................................................................................................................201729.007290000000000000000000000033311134181917613173356329215308151001715600000001000005139820013131221781160000290172900001000500000020110000000007000000316120004000010001101000000000000244180000000079720300000000110000000000000
............................................................................AAGGGATTCTGATGTTGGTCACACAT............................................................................................................................261710.0071000000000000000000000000001115740029480000000000002021000000001001106241300025131618213900000000000000000000760100000000000000000000000002000000200000001003900000000000003101079000000003080013800000000000201200000000
............................................................................AAGGGATTCTGATGTTGGTCACG...............................................................................................................................231707.00707000000001003000000000001004205141110022322321001000038402114001200020310141013786200554954732251000000000010000000070000000111100000000010000010130010050000000000150000000000100531420000000002984090000000020000000000000
............................................................................AAGGGATTCTGATGTTGGTCACACAA............................................................................................................................261698.0069800000000000000000000000200017330144240000000503000101022000000000116237100832951631125000000000000000000007300000000000000000000000000000000000000000000042000000200000022122800000000213107500000000010000000000000
......................................................................................................................AGTGGCGAACACAGAATCCATA......................................................................................221672.006720000000000000000000000010037234340032000000011101130493014000101411131510617263000065634223761000000000000000000400000001000000000000100100000000004000000021100000100000200002300000000200010000000010000000000000
............................................................................AAGGGATTCTGATGTTGGTCACACTCATT.........................................................................................................................291670.0067000001000000000000000000000000110002000000000000000000000000000000000000000000092525000000000000000000026000000000000000000000000000010000000000000000190000000000000000000000000100000000000000000100000000
......................................................................................................................AGTGGCGAACACAGAATCCATACT....................................................................................241627.0062700000000000000000000000171450108911512920000000301005292760350000036483863625404752000021002800000000000000000000400000000000000000000000000000000001000000001000000000000000221140000000029200220000000000000000000000
.............................................................................AGGGATTCTGATGTTGGTCACACTC............................................................................................................................251600.00600000001000001000000000001604511733163211434000000000000082040111010196281712911180001814244441101000000200160000000014000000000000000000000000000000000000000500011500000000000002331010000000151210470400000000000000000011
.......................................................................................................................GTGGCGAACACAGAATCCATACT....................................................................................231561.0056100000000000000000000000101110110100000000000000001812214200000617182114454325383600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110400000000100020000000000000000000000
............................................................................AAGGGATTCTGATGTTGGTCATC...............................................................................................................................231532.0053200000000000000000000000000000010010000000000100000000000000000000000000004221010000000000000000001000000000001000000000000000000000000000000000000000000000200000000000000000000000000000811436312900000000
............................................................................AAGGGATTCTGATGT.......................................................................................................................................1514530.647429000000000000000000000000000000000000061113112619526224800000000000033487682929138124120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000051197900000000541030210000000000001000000000
............................................................................AAGGGATTCTGATGTTGGTCACACTCTT..........................................................................................................................281527.005270000000000000000000000000120242932001015930000000000000111151000001100000000000003000016000000000000000000001290010001000000000000000000004000000000000000008300000000000003310170000000019610470000000000000000000011
............................................................................AAGGGATTCTGATGTTGGTCACACTCC...........................................................................................................................271503.005030000000000000000000000030110156008199100000000000000242112000100000010100003368402461200010000000000000009000000000000000000001000000000000000000000010370000000000000131820000000221710110000000100000000000000
............................................................................AAGGGATTCTGATGTTGGTCACACC.............................................................................................................................251500.0050000000000000000000000000900128761024162611000000000000044111000100124332314111210032243039180200000000000000000002400000000130000000000000000000000000000000000014000000000000014210200000009210280000000000002100000000
............................................................................AAGGGATTCTGATGTTGGTCACACTTT...........................................................................................................................271486.0048600000000000000000000000410001724130035430000000000001540010002200000330000001021306110000000000000000000017800000000270000000000000000010000003000000010059000000000000023517000000009120140000000000000000000000
............................................................................AAGGGATTCTGATGTTGGTCACAAAA............................................................................................................................261478.0047800000000000100000000000000002105253330000000100000100000000000000201010001993721013000000000000000000001800000000000000000000000000000000004000000000024000000000000088237500000000148111630000000000010000000000
.................................................................................ATTCTGATGTTGGTCACACTC............................................................................................................................211459.004590000100000000000000000070000812800316110000001000022151530440000010171017451633120004114231510000000000000000000080000000000000000000000000000000000000000000110000000000000001130000000021900110000000000000000010000
............................................................................AAGGGATTCTGATGTTGGTT..................................................................................................................................202435.0087000000000000000000000000402203430214317813549321530421224611170000001000101004219131000076980310000100000000000010060010000000000000000120000000400000000000001000000000000010091131143000000001631781110100000000000000000000
........................................................................................................................TGGCGAACACAGAATCCATAC.....................................................................................211399.00399000000000000000000000006053217231500333721150100042032010241000000002932241187854000000000000000000000000000001000000000000000000000000000000000010000000100000000000000001246000000004270072000000000000000000000
............................................................................AAGGGATTCTGATGTTGGTCACACTAAT..........................................................................................................................281397.003970000300000000000000000000000230000210000000000000041051010000010000000000020000157000000000000000000009000010000000000000000000000000000000000000000032000000000000034318100000003000500000000000000000000000
................................................................................GATTCTGATGTTGGTCACACTC............................................................................................................................221371.00371000000000000000000000003000130513300441100000000000000200000000010010112100005200193000000000000000000001000000000000000000000000000000000000000000000000000000000001112000000009150040000000000000000000000
.................................................................................ATTCTGATGTTGGTCA.................................................................................................................................164368.7514750000000000000000000000000000000000000000000000000000000000000000000000000000003814270000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000600030000000000000000000000
............................................................................AAGGGATTCTGATGTTGGTCACAG..............................................................................................................................241362.0036200000000000000000000000200000867012191712000000051200000000000000142442491000025153938114200000000000000000001700000010000000000000001000013010005000000000010000000000100134150000000014620210000000000000000000000
............................................................................AAGGGATTCTGATGTTGGTCATT...............................................................................................................................231349.003490000000000000000000000080251121244122500000001614180500100100001010114013100018107152150800001000000010110039111022332021000000004000108526000007010100000070000000000301001900000000510030000000181000020010000
..................................................................................TTCTGATGTTGGTCACACTCA...........................................................................................................................211342.0034200000000000000000000000100113137200020000000000000001130000001000000000110000000022600000000000000000000100000000000000000000000000000000000000000000000000000000000000100000000081040000000000000000000000
.................................................................................ATTCTGATGTTGGTCAC................................................................................................................................172317.00634000000000000000000000000000074500101100000000200000000000000010000000000000000205790000000000000000000000000000000000000000000000000000000000000000000000000000000012200000000430010000000000000000000000
.................................................................................ATTCTGATGTTGGTCACACTCA...........................................................................................................................221301.0030100000000000000000000000100000000000000000000000001480000000000110007370002000025700000000000000000000200000000000000000000000000000000000000000000000000000000000001400000000000020000000000000000000000
............................................................................AAGGGATTCTGATGTTGGTCACAAAT............................................................................................................................261298.00298000000000000000000000000000020000111000000000000000200000010000002000000017311120110000000000000000000022000000000000000000000000000000000020000000000200000000000000669440000000012201200000000000000000000000
............................................................................AAGGGATTCTGATGTTGGTCACC...............................................................................................................................231283.0028300000000000000000000000170011051010301000000076100700200222000044034230200010141613384700000000000000000001500000000120000000000400000000000000000000000040100000000000330310000000410040000000000000000000000
............................................................................AAGGGATTCTGATGTTGGTCG.................................................................................................................................211282.00282000000000000000000000001003010200814410021110996530200000000000020210007200010962003300000000000000000001400000010000000000000000000003000000000000000000000000000000136210000000049104140000000000000000000000
............................................................................AAGGGATTCTGATGTTGGTCACACATA...........................................................................................................................271280.00280000000000000000000000000000000000000000000000000000000000000100000000000020000000000000000000000000400000000000000000000000000000000000000000000010000000000000000200000000000000000000001801712211300000000
......................................................................................................................AGTGGCGAACACAGAATCCAT.......................................................................................211279.00279000000000001000000000002818142401611301011620111513411730432000001102461912386500045423003000000000000000000300000110000000000002000000000000001000000051100000000000400001100000000200010200000110000000000000
............................................................................AAGGGATTCTGATGTTGGC...................................................................................................................................193257.67773000000000000000000000000000022201467134542494918547747312010000000000510003031100563502000000000000000000001000000000000000000005000000000000000000000000000000000000003108151000000019461150000000000000000000000
............................................................................AAGGGATTCTGATGTTGGTCACTT..............................................................................................................................241251.00251000000000000000000000002113015169243668000000050400010002100100010111000100476800000000000000000000002101020001191000000000000000110000001000000000043000000000000014109000000001730030000000200000000000000
............................................................................AAGGGATTCTGATGTTGGTCACACTATT..........................................................................................................................281243.00243000000000000000000000000000033400031300000000000002610000000000000000000020000500000000000000000000790000000002000000000010000000000000000000000002200000000000001101024000000006300470000000000002300000000
............................................................................AAGGGATTCTGATGTTGGTCC.................................................................................................................................211228.00228000000000000000000000001001021222041330100041989101121000000000000010001300105291046400000000000000000009000000001200000000003000000100000000000000000000000000000003198000000001074010000000000000000000000
..................................................................................TTCTGATGTTGGTCACACTCT...........................................................................................................................211227.002270000000000000000000000060101515830000000000000000000112200000000000110011000002006100000000000000000000000000000000000000000000000000000000000000000000000000000000200200000000020010000000000000000000000
............................................................................AAGGGATTCTGATGTTGGTCACAAG.............................................................................................................................251226.002260000000000000000000000000000020007534000000020000000100000000032040441100011111581180000000000000000000070000000000000000000000000000000000100000000001000000000000017522000000006400560000000000000000000000
............................................................................AAGGGATTCTGATGTTGGTCACACAAT...........................................................................................................................271209.0020900000000000000000000000000002110011010000000000000411000000100000000000001721107400000000000000000000520000000000000000000000010000000000000000000001900000000000003013000000002000190000000000000000000000
................................................................................GATTCTGATGTTGGTCACACTCA...........................................................................................................................231199.0019900000000000000000000000000000000000000000000000000200000000000000002000000100019100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110010000000000000000000000
............................................................................AAGGGATTCTGATGTTGGTCACTA..............................................................................................................................241199.00199000000000000000000000002000033220275500000004020000010000000010123100200014818192100100000000000000000018000000000100000000001000010020000000000000000170000000000000345700000000102050000000010009200000000
.......................................................................................................................GTGGCGAACACAGAATCCATAC.....................................................................................221194.0019400000000000000000000000300301010024100000000000000010001001101717224319143610000000100000000000001000000000000000000100000000000000000000000000000000000000000100000002141000000000000030000000000000000000000
.............................................................................AGGGATTCTGATGTTGGT...................................................................................................................................181192.001920000000000000000000000010022144100031013020002010400100000000000001431240008981301300000012000200000000200000000000000000000100000000000000000000000000000000000000461100000000031400100100000000000000000000
............................................................................AAGGGATTCTGATGTTGGTAT.................................................................................................................................217191.71134200000000000000000000000110200320211173013121024230301709810468156800200000000010131166600003342001500000000000000000070212503014000000000130000010217430000501000003000000000000030379191300000000023838162220010000110000110000000
............................................................................AAGGGATTCTGATGTTGGTCACACTTTT..........................................................................................................................281187.00187000000000000000000000000001010234007526000000000000001000000000000000000000000000000000000000000000006000000000050000000000000000000000001000000000080000000000000312201000000013201100000000010000000000000
................................................................................GATTCTGATGTTGGTCAC................................................................................................................................182185.50371000000000000000000000003001041372700212200000000000001200000010100001000000031291020051000000000000000000005500000000000000000000000000000000000000000000000000000000000221160000000013170020000000000000000000000
.................................................................................ATTCTGATGTTGGTCACAC..............................................................................................................................191185.00185000000000000000000000005011065500001200000000000013420000010042210101000071051008900000000000000000000700000000000000000000000000000000006000000000000000000000000000100000000200000000000000000000000000
.............................................................................AGGGATTCTGATGTTGGTCACACTATC..........................................................................................................................271179.00179000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001805599700000000
............................................................................AAGGGATTCTGATGTTGGTCACAGA.............................................................................................................................251175.0017500000000000000000000000000000002000000000000000000100010000000100003121300011710909200000000000000000000800000000000000000000000000000000003000000000010000000001000000000000000000000000000000000000000000
............................................................................AAGGGATTCTGATGTTG.....................................................................................................................................172171.003420000000000000000000000000000681301413711216203040400000000000000242429127130000000000000000000000000000000000000000100000000000000000000000000000000000000000000001004913520000000055801190210000000000000000000
............................................................................AAGGGATTCTGATGTTGGTCAAG...............................................................................................................................231161.001610000000000020000000000020000100520431000000000000000000000000000010461000614171424500000000000000001000500000000000000000000000000030010001000000000040000000000000002500000000230040000000000000000000000
...............................................................................GGATTCTGATGTTGGTCA.................................................................................................................................181155.0015500000000000000000000000201000100002310000000000000000000000000000000000002402013200000000000000000000000000000000000000000000000000000000000000000000000000000000002100000000100100000000000000000000000
............................................................................AAGGGATTCTGATGTTGGTCACACAAA...........................................................................................................................271140.0014000000000000000000000000000000020000000000000000000100000000000000000000001333007500000000000000000000150000000000000000000000000000000000000000000001100000000000001105000000000000100000000000000000000000
cavPor3
GCTGGCCTCTTGCTCCAACCATAGCC----------AGGCTTGGAG-AGCTTTCTGAACCAATGCCAATGTCAGAGAGAGGATTCTGCTGCCGGTCCCACTCCAAAGTTTATAAAATGGGTGGTGGGCACAGAATCCGGACTCTGCCTGTGGCATACATCATCTGGTCTGG-----------ATCCTCACTGGCCACCCCGCTG--GGTCGA-TGT----------SizeHit CountTotal NormTotal
No Reads
dipOrd1
GC----CCCGTGCTCCAGGCCTGGCA----------AGACTTGGAG-GGCGTGCTGAGCTCATGCCAAAGTCAGGGAAAGGATTCTGCTGTCGGTCCCACTCCAAAGTTCACAAAATGGGTGGTGGGCACAGAATCCAGACTCTGCTTATGGCTTATGTCGTC-------G-----------ATCCTCGCCGGCCAGCACTCCT--TGGTGTGCTGCGGGTTGGGGSizeHit CountTotal NormTotal
No Reads
hetGal2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
ochPri2
GCTGGCACCTCACAGTTGGCGGAGTG----------AGGCTTGGAGGGGCTTCCCGAAGTCGTGCCAACGTCAGGGAAAGGATTCTGCTGTCGGTCCCACTCCAAAGTTCACAAAATGGGTGGTGGGCACAGAATCCAGACCCTGCTTGTGGCATCTGTCGTCTGGCCCCG-----------C--CCCCGCGGCCAGCCCG----------T-GGT----------SizeHit CountTotal NormTotal
No Reads
oryCun2
GCTGGCGTCTCGCTCTCATCATAGCCAGGCCTGGGGGGGG-GGGGG-GGCGTTCTGAACTCGAGCCAACGTCAGGGAAAGGATTCTGCTGTCGGTCCCACTCCAAAGTTCACAGAATGGGTGGTGGGCACAGAATCCAGACTCTGCTTGTGGCACACGTCGTCTGGTCCCGGCCTGGCCCCGGCCCTCCGCGGCCAGCCGG----------T-GGC----------SizeHit CountTotal NormTotalGSM1528820
Adult_testes		GSM1528821
Adult_testes_Mili_IP
............................................................................AAAGGATTCTGCTGTCGGTCCC................................................................................................................................2212.00202
rn5
ACCAGTCTCTTGCC-GAGCTACAGCA----------AGGCTAGAAG--CCTGTGTGAACTCTTGCCAAAATCAGAGAAGGGATTCTGATGTTGGTCACACTCCAAGAATTTTAAAATGAGTGGCGAACACAGAATCCATACTCTGCTTATGGCCTAAGTCAATGGATCCTG-----------ACCCTTACTGGATAGCCCTCTCTATGACGTGCTT----------SizeHit CountTotal NormTotalGSM1528817
Adult_testes		GSM1528818
Adult_testes_Mili_IP		GSM1528819
10dpp_testes
............................................................................AAGGGATTCTGATGTTGGTCACA...............................................................................................................................2311452.001452000
............................................................................AAGGGATTCTGATGTTGGTCAC................................................................................................................................221816.00816000
............................................................................AAGGGATTCTGATGTTGGTCA.................................................................................................................................211500.00500000
............................................................................AAGGGATTCTGATGTTGGTCACAC..............................................................................................................................241391.00391000
............................................................................AAGGGATTCTGATGTTGGTCACACT.............................................................................................................................251229.00229000
............................................................................AAGGGATTCTGATGTTGGTC..................................................................................................................................201228.00228000
.............................................................................AGGGATTCTGATGTTGGTCACA...............................................................................................................................22146.0046000
............................................................................AAGGGATTCTGATGTTGGTCACACTC............................................................................................................................26138.0038000
............................................................................AAGGGATTCTGATGTTGGT...................................................................................................................................19137.0037000
.............................................................................AGGGATTCTGATGTTGGTCAC................................................................................................................................21132.0032000
......................................................................................................................AGTGGCGAACACAGAATCCAT.......................................................................................21131.0031000
......................................................................................................................AGTGGCGAACACAGAATCCATA......................................................................................22124.0024000
............................................................................AAGGGATTCTGATGTTG.....................................................................................................................................17117.0017000
............................................................................AAGGGATTCTGATGTTGGTCACACTCT...........................................................................................................................27114.0014000
............................................................................AAGGGATTCTGATGTTGGTCACT...............................................................................................................................23113.0013000
.............................................................................AGGGATTCTGATGTTGGTC..................................................................................................................................19111.0011000
............................................................................AAGGGATTCTGATGTTGGTCAA................................................................................................................................22111.0011000
......................................................................................................................AGTGGCGAACACAGAATCC.........................................................................................19110.0010000
.......................................................................................................................GTGGCGAACACAGAATCCATA......................................................................................2118.008000
............................................................................AAGGGATTCTGATGTTGGTCAT................................................................................................................................2218.008000
..............................................................................GGGATTCTGATGTTGGTCACA...............................................................................................................................2117.007000
............................................................................AAGGGATTCTGATGTTGG....................................................................................................................................1816.006000
............................................................................AAGGGATTCTGATGTTGGTCACACTT............................................................................................................................2616.006000
..............................................................................GGGATTCTGATGTTGGTCAC................................................................................................................................2015.005000
.............................................................................AGGGATTCTGATGTTGGTCACAC..............................................................................................................................2315.005000
.............................................................................AGGGATTCTGATGTTGGTCA.................................................................................................................................2015.005000
............................................................................AAGGGATTCTGATGTTGGTCACACA.............................................................................................................................2515.005000
...............................................................................GGATTCTGATGTTGGTC..................................................................................................................................1713.003000
............................................................................AAGGGATTCTGATGTTGGTA..................................................................................................................................2013.003000
...............................................................................GGATTCTGATGTTGGTCAC................................................................................................................................1913.003000
............................................................................AAGGGATTCTGATGTTGGTCACACTTT...........................................................................................................................2713.003000
............................................................................AAGGGATTCTGATGTTGGTCACTAA.............................................................................................................................2512.002000
............................................................................AAGGGATTCTGATGTTGGTCC.................................................................................................................................2112.002000
............................................................................AAGGGATTCTGATGTTGGTCACACTA............................................................................................................................2612.002000
............................................................................AAGGGATTCTGATGTTGGTCACAT..............................................................................................................................2412.002000
............................................................................AAGGGATTCTGATGTTGGTCACACTTA...........................................................................................................................2712.002000
.............................................................................AGGGATTCTGATGTTGGTCACACT.............................................................................................................................2412.002000
......................................................................................................................AGTGGCGAACACAGAATCCA........................................................................................2012.002000
............................................................................AAGGGATTCTGATGTTGGTCACAA..............................................................................................................................2412.002000
..............................................................................GGGATTCTGATGTTGGTCACACT.............................................................................................................................2312.002000
................................................................................GATTCTGATGTTGGTCAC................................................................................................................................1811.001000
........................................................................................................................TGGCGAACACAGAATCCATAC.....................................................................................2111.001000
...............................................................................GGATTCTGATGTTGGTCACT...............................................................................................................................2011.001000
........................................................................................................................TGGCGAACACAGAATCCAT.......................................................................................1911.001000
............................................................................AAGGGATTCTGATGTTGGTCAG................................................................................................................................2211.001000
............................................................................AAGGGATTCTGATGTTGGTCACACAT............................................................................................................................2611.001000
............................................................................AAGGGATTCTGATGTTGGTCACTA..............................................................................................................................2411.001000
............................................................................AAGGGATTCTGATGTTGGTCACC...............................................................................................................................2311.001000
........................................................................................................................TGGCGAACACAGAATCCATA......................................................................................2011.001000
..............................................................................GGGATTCTGATGTTGGTC..................................................................................................................................1811.001000
.......................................................................................................................GTGGCGAACACAGAATCCAT.......................................................................................2011.001000
......................................................................................................................AGTGGCGAACACAGAATC..........................................................................................1811.001000
............................................................................AAGGGATTCTGATGTTGGTCACACTCTT..........................................................................................................................2811.001000
...................................................................................TCTGATGTTGGTCACA...............................................................................................................................1640.753000
............................................................................AAGGGATTCTGATGTTGGTCCA................................................................................................................................2220.501000
................................................................................GATTCTGATGTTGGTC..................................................................................................................................1620.501000
................................................................................GATTCTGATGTTGGTCACACAA............................................................................................................................2220.501000
............................................................................AAGGGATTCTGATGTT......................................................................................................................................1690.444000
............................................................................AAGGGATTCTGATGTTGGTT..................................................................................................................................2030.331000
speTri2
GCTGGCCTCTTGCTCCAGTAGCAGCA----------AGACTTCGAG-GGCTTTCTGAACTCATGCCAACGTCAGGGCAAGGATTCTGCTGTCGGTCCCACTCCAAAGTTCACAAAATGGGTGGTGGGCACAGAATCCAGACTCTGCTTGTGGCTTATATCGTCTGACCCCA-----------GCCCTCTCCGGCTAGCCAACTGC------T-TGT----------SizeHit CountTotal NormTotal
No Reads

Generated: 06/17/2015 at 02:31 PM