ID:

mmu-mir-497a

 Coordinate:

chr11:70234717-70234800 +

 Confidence:

Known

 Type:

Unknown

 [View on miRBase]
[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-43.8 -43.8 -43.5

Sense Strand Reads

GGGGTCTTCACGGCACTGCCTGTGCTGTCTTCCTCTCGACCCACCCCAGTCCTGCCCCCGCCCCAGCAGCACACTGTGGTTTGTACGGCACTGTGGCCACGTCCAAACCACACTGTGGTGTTAGAGCGAGGGTATGGGAGGCACCGATGAGCCTGGCCCTGGGAGGCCACCCTGGAGAAGCAAC
************************************************.((((((((.(((...((((.((((.(((((((((.(((((......)))..)).))))))))).)))).))))...))).))))..)))).******************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR037929
embryo		 GSM510444
brain		 SRR037928
embryo		 SRR037924
embryo		 SRR037925
embryo		 SRR037906
brain		 SRR077866
liver		 GSM475281
testes		 SRR032476
uterus		 SRR037927
embryo		 SRR037905
brain		 SRR553583
cerebellum		 SRR032477
uterus		 SRR077864
liver		 SRR390298
fibroblast		 SRR037930
embryo		 SRR391845
embryo		 SRR391846
embryo		 SRR077865
liver		 SRR037923
embryo		 SRR553585
kidney		 SRR391847
embryo		 SRR345199
brain		 SRR039153
muscle		 SRR345203
brain		 SRR553582
brain		 SRR037926
embryo		 SRR039152
muscle		 SRR037897
ovary		 SRR039154
muscle		 SRR345202
brain		 SRR390297
fibroblast		 SRR345201
brain		 SRR345207
brain		 SRR345204
brain		 SRR095853
heart		 SRR037907
brain		 SRR039610
brain		 SRR042478
lung		 SRR553584
heart		 SRR038744
brain		 SRR391849
embryo		 SRR345197
brain		 SRR345205
brain		 SRR1647950
Dicer_cKO_leptotene_zygotene_spermatocytes		 SRR391848
embryo		 SRR037902
testes		 SRR038741
brain		 SRR037898
ovary		 SRR069809
Type_A_spermatogonia		 SRR037904
brain		 SRR037901
testes		 SRR248526
Thy1-_somatic_testes_cells		 SRR037921
embryo		 SRR065058
pancreas		 SRR042480
kidney		 SRR1647954
Dicer_cKO_pachytene_spermatocytes		 SRR206940
brain		 SRR065059
pancreas		 SRR345198
brain		 SRR042486
ovary		 SRR391852
embryo		 SRR206942
brain		 SRR248525
Thy1-_somatic_testes_cells		 SRR037920
embryo		 SRR391851
embryo		 SRR1647947
Dgcr8_WT_leptotene_zygotene_spermatocytes		 SRR391853
embryo		 SRR345196
brain		 SRR069810
pachytene_spermatocytes		 SRR1647949
Dicer_WT_leptotene_zygotene_spermatocytes		 SRR116846
epididymis		 SRR042477
brain		 SRR040488
liver		 SRR042484
salivary gland		 SRR1509750
spermatogonia		 SRR206941
brain		 SRR391850
embryo		 SRR345206
brain		 SRR095855BC7
heart		 SRR042462
bone marrow		 SRR1647948
Dgcr8_cKO_leptotene_zygotene_spermatocytes		 SRR248527
spermatogonia		 SRR206939
brain		 SRR553602
sertoli_cells		 SRR345200
brain		 SRR248524
Thy1+_spermatogonia		 SRR1509751
foetal_primordial_germ_cells		 SRR037899
ovary		 SRR248523
Thy1+_spermatogonia		 SRR553603
spermatids		 SRR1647953
Dicer_WT_pachytene_spermatocytes		 SRR037903
testes		 SRR037922
embryo		 SRR1647951
Dgcr8_WT_pachytene_spermatocytes		 SRR065055
jejunum		 SRR553586
testes		 SRR042471
spleen		 SRR363964
testes		 SRR553604
spermatocytes		 SRR037900
testes		 SRR095855BC2
heart		 SRR039185
fibroblast		 SRR073954
blood		 SRR042476
heart		 SRR095855BC6
heart		 SRR065053
jejunum		 SRR039186
fibroblast		 SRR095855BC1
heart		 SRR051940
testes		 SRR1647952
Dgcr8_cKO_pachytene_spermatocytes		 SRR042481
pancreas		 SRR065047
liver		 SRR065054
jejunum		 SRR095855BC3
heart		 SRR014234
ovary		 SRR073955
blood		 SRR039183
fibroblast		 SRR059770
spleen		 SRR065049
liver		 SRR059769
spleen		 SRR065050
liver		 SRR065052
jejunum		 SRR037919
embryo		 SRR059768
spleen		 SRR014231
testes		 SRR042482
skin		 SRR065056
jejunum		 SRR069811
round_spermatid		 SRR042483
muscle		 SRR065046
liver		 SRR039184
fibroblast		 SRR060845
brain		 SRR095855BC5
heart		 SRR065048
liver		 SRR1509748
spermatozoa		 SRR042487
spleen		 SRR1509749
zygote		 SRR095855BC8
heart		 SRR065045
liver		 SRR363963
testes		 SRR1509747
oocyte		 SRR042479
liver		 SRR095855BC10
heart		 SRR042466
spleen		 SRR095855BC4
heart		 SRR042455
blood		 SRR042472
lymph		 GSM317181
brain		 SRR059771
spleen		 SRR042485
testes		 GSM566419
fibroblast		 SRR059765
thymus		 SRR037896
ovary		 SRR042470
lymph		 SRR525238
Blood		 SRR042473
lymph		 SRR095855BC9
heart		 GSM566420
fibroblast		 SRR059767
thymus		 SRR042461
bone marrow		 GSM509275
testes		 SRR042465
spleen		 SRR525237
Blood		 GSM509279
testes		 SRR042463
spleen		 SRR042468
lymph		 SRR059766
thymus		 SRR042457
bone marrow		 GSM317182
brain		 SRR042475
fibroblast		 SRR059773
spleen		 SRR014235
testes		 SRR042456
bone marrow		 SRR042460
blood		 SRR059772
spleen		 SRR069834
blood
...............................................................CAGCAGCACACTGTGGTTTGT.................................................................................................... 21 0 1 56619.00 56619 5417 6637 4988 2694 2589 2303 2047 1800 2011 1409 1754 535 1452 1487 0 857 352 280 805 592 307 236 38 491 573 260 428 370 534 336 618 151 497 534 526 30 482 328 283 155 281 177 428 418 499 153 347 262 402 304 372 313 115 165 236 212 290 132 233 85 99 62 98 93 114 72 202 59 30 73 154 95 118 148 66 0 93 52 148 105 83 189 43 61 17 13 54 0 92 34 27 68 64 45 59 63 35 21 0 20 56 23 43 38 40 41 50 38 13 39 62 20 50 36 31 36 18 26 35 28 41 38 24 23 47 6 12 13 15 17 17 24 14 7 24 0 6 0 6 20 0 0 2 3 5 2 1 3 13 0 0 1 6 4 1 3 1 1 1 4 1 1 1 1 1 2 1 2 0 1 0 0 0 0 0 0 1
...............................................................CAGCAGCACACTGTGGTTTGTA................................................................................................... 22 0 1 32024.00 32024 3708 1273 3212 870 763 379 906 728 695 995 315 451 753 704 2079 565 651 572 242 181 354 560 1 319 155 296 131 279 272 318 77 583 26 104 134 18 88 238 213 184 223 449 13 107 235 429 182 236 180 269 72 146 300 235 131 109 162 164 98 3 102 204 150 138 170 183 126 160 3 107 114 99 68 69 81 0 101 134 23 48 85 30 95 84 61 0 86 0 39 77 97 72 27 57 70 15 45 49 0 55 27 24 44 30 18 18 16 35 25 16 17 27 11 23 16 14 32 31 12 19 11 13 18 34 9 4 24 13 15 10 20 15 19 15 11 0 14 0 2 10 0 0 5 5 5 3 0 7 0 0 5 0 2 1 3 3 1 2 0 0 1 1 1 2 1 1 1 1 1 0 1 0 0 0 0 0 0
...............................................................CAGCAGCACACTGTGGTTTGTAA.................................................................................................. 23 1 1 5821.00 5821 617 538 541 141 151 183 96 338 124 167 153 189 86 92 0 112 221 181 24 28 43 173 0 23 59 47 21 44 28 45 6 53 0 28 23 0 27 30 60 20 37 36 0 33 6 36 50 38 27 30 27 37 35 27 30 20 3 20 21 0 42 30 11 19 14 29 3 20 0 56 7 10 14 13 16 0 4 12 3 7 8 0 7 7 4 0 8 28 6 9 21 1 6 5 0 14 9 4 0 6 5 2 5 6 5 1 1 9 6 9 1 6 1 1 3 0 5 2 3 1 0 0 9 3 0 10 4 6 3 2 5 3 4 5 0 0 1 0 2 0 0 0 2 0 1 3 1 0 0 0 2 0 1 0 0 0 0 0 0 0 2 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................CAGCAGCACACTGTGGTTTGTAT.................................................................................................. 23 1 1 3341.00 3341 217 180 210 121 126 69 134 200 202 75 44 31 137 124 0 41 140 143 34 28 16 93 0 25 26 7 13 23 29 25 9 0 0 21 11 0 15 17 73 10 16 25 0 11 3 21 8 17 30 19 9 12 6 10 32 18 4 5 20 1 63 11 2 9 10 18 1 11 0 17 5 16 15 14 9 0 5 3 1 4 7 2 5 2 1 0 4 0 3 0 2 0 8 2 1 10 2 3 0 1 4 1 2 3 8 3 3 0 3 8 0 12 4 8 2 0 3 0 3 3 3 3 4 0 3 6 2 7 8 1 2 0 6 2 0 0 0 0 0 2 0 0 6 1 2 1 0 0 1 0 1 1 0 1 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0
...............................................................CGGCAGCACACTGTGGTTTGT.................................................................................................... 21 1 1 2761.00 2761 7 856 10 8 4 332 1 1 1 1 294 698 1 1 0 5 0 0 1 0 6 0 2 1 25 101 0 2 1 0 28 0 15 20 26 0 65 11 12 4 26 0 16 31 0 0 0 8 2 0 65 2 0 0 0 0 0 23 0 4 0 0 9 0 0 0 0 0 6 0 0 0 5 1 0 0 7 0 3 1 0 0 0 7 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................CAGCAGCACACTGTGGTTTG..................................................................................................... 20 0 1 1999.00 1999 81 111 56 39 61 37 3 93 66 21 19 16 55 5 0 16 63 47 3 11 12 33 42 31 60 10 8 26 10 35 69 0 82 53 37 2 6 5 4 8 9 21 56 37 7 15 3 7 12 17 5 2 8 4 19 8 1 7 23 127 10 2 6 5 0 1 5 1 6 5 1 2 2 3 26 0 3 9 19 8 2 0 1 1 4 62 5 0 2 3 2 1 1 0 1 4 4 7 0 2 0 0 0 0 0 5 4 0 1 1 1 3 2 1 4 0 0 0 1 3 1 1 2 0 0 0 2 3 3 2 1 0 1 1 1 0 5 0 0 0 0 0 0 0 0 0 3 2 0 0 0 1 0 0 1 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................AGCAGCACACTGTGGTTTGTAC.................................................................................................. 22 0 1 1870.00 1870 228 100 172 158 160 27 4 83 65 54 25 11 61 9 0 31 32 28 2 26 5 15 0 10 7 7 22 11 15 10 7 40 0 4 2 0 12 6 21 1 7 41 0 5 3 54 14 9 8 48 5 6 4 14 6 4 1 1 5 0 7 11 5 2 6 15 1 19 0 5 0 4 8 1 3 0 2 32 1 0 0 0 1 0 2 0 2 0 1 2 1 0 2 1 1 0 1 0 0 1 1 0 1 0 1 0 2 0 2 4 0 1 1 0 0 0 1 0 0 2 0 0 1 0 0 0 0 1 3 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................AGCAGCACACTGTGGTTTGT.................................................................................................... 20 0 1 1771.00 1771 187 244 172 42 35 95 40 80 42 43 74 9 40 37 0 28 1 2 11 10 4 2 13 18 19 3 6 15 12 12 17 0 29 18 11 0 19 19 0 3 14 9 20 15 0 10 14 14 13 11 12 12 3 6 13 8 1 2 7 54 1 0 2 2 2 0 1 2 0 1 0 0 4 0 1 0 5 1 6 7 2 0 3 1 0 24 1 0 5 3 0 0 1 1 0 0 0 0 0 1 2 0 0 0 0 1 1 0 5 0 0 1 1 1 0 1 0 2 0 1 3 0 0 0 1 0 1 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 11 0 1 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 2 0 0 0 1 0
............................................................AAACAGCAGCACACTGTGGTTTGTA................................................................................................... 25 3 1 1520.00 1520 2 0 0 684 637 0 0 0 0 0 0 0 0 0 0 0 0 0 0 118 0 0 0 0 0 0 79 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................CAGCAGCACACTGTGGTT....................................................................................................... 18 0 1 1209.00 1209 11 5 7 4 9 1 0 3 4 2 1 3 2 0 0 1 4 1 0 1 0 1 1037 2 1 3 3 6 0 5 3 0 5 2 2 0 0 6 0 3 2 0 9 0 0 0 0 3 0 0 0 0 3 2 1 0 0 0 3 7 3 0 0 0 1 0 0 0 16 0 1 0 0 2 0 0 0 0 4 0 0 1 0 0 0 4 3 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................CAGCAGCACACTGTGGTTTGTAG.................................................................................................. 23 1 1 1061.00 1061 39 23 30 25 24 2 2 11 21 4 5 147 11 3 0 7 5 11 0 6 106 6 0 4 1 60 2 4 3 2 0 0 0 1 1 0 1 12 4 154 8 6 0 0 0 7 1 10 2 0 2 0 27 0 4 1 0 19 3 0 5 6 2 17 3 5 0 10 0 1 0 9 2 3 0 0 6 1 0 15 3 0 6 4 36 0 4 0 0 8 1 0 0 1 0 0 5 0 0 5 0 14 0 0 0 10 0 0 8 0 0 0 0 0 6 0 0 2 0 0 0 0 1 0 0 6 0 0 0 0 0 0 0 6 0 0 0 0 17 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................AGCAGCACACTGTGGTTTGTA................................................................................................... 21 0 1 995.00 995 153 53 129 51 33 11 25 23 26 44 17 4 23 12 0 18 3 5 3 9 7 1 0 18 4 4 6 14 11 17 5 3 3 5 3 0 4 15 5 5 10 12 5 2 0 17 12 11 9 8 3 8 4 2 3 6 2 1 0 0 3 2 5 3 4 1 3 2 0 0 1 5 1 2 9 0 2 5 0 10 2 0 10 1 1 0 1 0 2 0 0 0 1 2 1 0 1 3 0 2 2 2 0 0 0 2 1 1 3 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 2 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................CAGCAGCACACTGTGGTTTGTT................................................................................................... 22 1 1 935.00 935 35 118 52 32 36 31 36 11 14 11 29 48 5 43 2 8 2 2 12 5 37 4 0 5 3 26 2 9 13 5 9 0 0 7 5 0 8 17 10 24 14 1 0 8 10 0 4 23 8 2 4 3 9 0 1 3 6 20 1 0 2 0 19 4 1 0 3 0 0 0 2 6 1 0 1 0 12 1 0 4 1 3 2 7 0 0 2 0 1 1 0 1 2 0 1 1 1 0 0 0 1 2 0 0 2 2 2 0 2 0 1 0 0 0 0 0 0 0 2 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 4 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................CGATCCAGCAGCACACTGTGGTTTGT.................................................................................................... 26 2 1 917.00 917 99 68 105 178 238 23 0 3 0 25 21 0 0 0 0 12 0 0 0 40 0 0 0 0 0 0 30 0 14 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 19 0 8 0 3 9 0 8 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................CAGCAGCACACTGTGGTTTGTAC.................................................................................................. 23 0 1 882.00 882 108 40 86 68 62 15 8 29 22 25 11 12 19 0 0 8 35 43 1 11 5 27 0 2 0 4 15 4 1 3 0 21 0 1 7 2 3 8 2 4 7 8 0 0 8 9 2 4 2 8 3 1 4 5 3 2 0 1 2 0 4 13 3 1 8 15 1 15 0 2 2 2 1 0 0 0 1 2 0 0 0 2 3 3 0 0 0 0 1 1 0 0 1 1 0 0 0 0 0 0 0 0 0 1 1 0 3 1 0 0 0 1 0 2 0 0 3 0 0 1 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................ACAGCAGCACACTGTGGTTTGT.................................................................................................... 22 1 1 849.00 849 0 1 0 365 346 0 1 0 0 0 1 0 0 0 0 0 0 0 0 82 0 0 0 0 0 0 51 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................ACAGCAGCACACTGTGGTTTGTA................................................................................................... 23 1 1 819.00 819 0 0 0 330 348 0 0 0 0 0 0 0 0 0 0 0 0 0 0 84 0 1 0 0 0 0 53 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................CAGCAGCACACTGTGGTTT...................................................................................................... 19 0 1 731.00 731 3 16 3 4 3 2 0 20 22 2 3 12 22 0 0 0 10 5 1 2 15 5 17 13 16 5 0 16 0 15 11 0 16 6 7 0 1 3 1 12 3 0 21 6 0 2 1 8 0 5 0 0 10 0 2 4 0 6 5 63 5 1 3 2 0 0 0 1 141 0 0 2 0 0 38 0 1 1 14 0 0 0 0 4 1 42 1 0 0 2 0 0 0 0 0 0 0 10 0 0 0 0 0 1 0 0 1 2 0 0 0 0 1 1 0 0 0 0 2 0 0 0 0 0 0 0 3 0 0 8 0 1 1 0 0 0 4 0 0 0 0 0 0 0 1 0 6 1 0 0 0 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................CCAGCAGCACACTGTGGTTTGT.................................................................................................... 22 0 1 602.00 602 2 12 3 2 0 4 0 2 0 0 2 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 562 3 0 0 0 0 1 0 0 0 0 0 1 1 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................CAGCAGCACACTGTGGTTTGA.................................................................................................... 21 1 1 595.00 595 14 74 9 15 7 17 30 22 14 1 25 37 17 28 0 12 0 1 16 4 7 0 0 14 8 5 1 6 7 12 14 0 15 11 11 0 5 1 13 11 1 0 8 14 1 0 6 1 2 2 3 7 0 0 8 8 1 3 8 0 2 0 2 0 2 0 0 0 2 2 0 3 1 0 0 0 0 0 4 1 0 0 1 0 0 1 0 0 2 1 0 0 0 0 0 2 0 0 0 0 1 0 0 0 2 0 0 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................CGGCAGCACACTGTGGTTTGTA................................................................................................... 22 1 1 516.00 516 3 137 5 1 0 49 2 0 0 1 46 133 0 1 1 6 2 0 4 0 6 0 0 1 5 19 0 3 0 0 3 0 0 3 4 0 11 8 6 1 18 0 0 7 0 0 0 5 0 0 13 0 1 0 0 0 0 1 0 0 0 0 2 0 0 0 0 0 0 1 0 0 1 0 0 0 2 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CGGCACTGTGGCCACGTC................................................................................. 18 0 1 455.00 455 0 0 0 0 0 0 0 1 0 0 0 22 0 0 0 0 0 0 0 0 18 0 5 9 1 15 0 10 0 23 0 0 11 3 3 0 0 1 1 14 0 0 30 2 0 2 0 1 0 1 0 0 16 0 1 0 0 0 3 9 3 0 0 29 1 0 0 0 87 0 0 2 0 0 0 0 0 0 0 1 10 0 32 0 37 0 5 0 0 14 0 0 0 0 1 1 2 9 0 7 0 1 0 0 0 0 0 0 2 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 2 0 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................CAAACCACACTGTGGTGTTAGA........................................................... 22 0 1 443.00 443 61 10 53 48 47 0 25 15 0 16 5 0 2 12 0 8 0 2 9 9 3 0 0 0 0 4 4 0 3 0 0 23 0 0 0 0 1 5 0 1 5 1 0 0 0 0 0 2 1 0 0 0 2 8 0 0 0 4 0 0 0 12 3 1 7 5 0 13 0 0 0 0 0 0 0 0 0 1 0 0 0 0 2 0 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 2 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................CAGCAGCACACTGTGGCTTGT.................................................................................................... 21 1 1 326.00 326 43 33 37 30 20 9 4 4 2 2 5 0 1 0 0 10 0 0 1 0 1 0 1 4 9 0 1 9 1 4 10 0 21 3 5 0 4 0 2 0 1 0 16 7 1 0 4 0 0 1 1 8 0 0 0 1 0 0 0 2 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................CAGCAGCACACTGCGGTTTGT.................................................................................................... 21 1 1 325.00 325 60 37 17 23 28 11 0 8 0 6 3 0 3 0 0 4 1 0 1 1 0 0 0 5 8 0 3 4 0 4 5 1 23 4 3 0 3 0 2 0 0 0 8 3 0 1 6 1 0 0 1 2 2 2 2 6 0 0 0 4 0 0 0 0 0 0 0 0 1 0 0 1 2 1 0 0 0 0 0 0 2 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 0 1 0 0 2 0 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................CAGCAGCACACTGTGGGTTGT.................................................................................................... 21 1 1 310.00 310 54 15 42 42 26 11 2 5 3 1 6 1 1 1 0 3 0 0 1 1 1 0 1 8 3 0 1 1 1 1 2 0 10 2 4 0 2 0 1 1 0 1 17 3 2 1 3 0 0 1 3 3 0 1 4 1 0 1 0 3 0 0 1 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................CAGCAGCACACTGTGGTTTGTAAA................................................................................................. 24 2 1 294.00 294 47 23 19 6 6 7 5 30 6 10 5 5 7 2 0 6 3 10 1 1 1 2 0 0 1 1 1 0 4 1 2 9 0 0 1 0 0 2 3 1 1 1 0 0 0 0 3 0 2 1 3 3 4 1 1 0 0 1 2 0 1 1 0 1 0 2 1 4 0 11 2 1 1 1 0 0 0 0 0 0 0 0 1 0 2 0 1 0 0 0 1 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 4 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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...............................................................CAGCAGCACACTGTGGTTTGTACA................................................................................................. 24 1 1 9.00 9 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................AGCAGCACACTGTGGTTTGTACG................................................................................................. 23 0 1 9.00 9 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................AGCCGCACACTGTGGTTTGT.................................................................................................... 20 1 1 9.00 9 2 0 1 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................CAGCAGCACACCGTGGTT....................................................................................................... 18 1 3 9.00 27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................ATCAGCAGCACACTGTGGTTTGT.................................................................................................... 23 2 1 9.00 9 4 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................AGATCCAGCAGCACACTGTGGTTTGTA................................................................................................... 27 3 1 9.00 9 0 0 0 5 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CCCCAGAAGTGCCGTGACGGACACGACAGAAGGAGAGCTGGGTGGGGTCAGGACGGGGGCGGGGTCGTCGTGTGACACCAAACATGCCGTGACACCGGTGCAGGTTTGGTGTGACACCACAATCTCGCTCCCATACCCTCCGTGGCTACTCGGACCGGGACCCTCCGGTGGGACCTCTTCGTTG
********************************************.((((((((.(((...((((.((((.(((((((((.(((((......)))..)).))))))))).)))).))))...))).))))..)))).************************************************ 		Read size # Mismatch Hit Count Total Norm Total GSM361430
brain		 GSM361408
brain		 GSM361399
brain		 GSM361394
brain		 GSM361402
brain		 GSM361395
brain		 GSM361407
brain		 GSM361415
brain		 GSM361398
brain		 SRR1509751
foetal_primordial_germ_cells		 SRR391848
embryo		 SRR391852
embryo		 SRR042471
spleen		 SRR391849
embryo		 SRR391850
embryo		 SRR391851
embryo		 SRR391853
embryo		 SRR042470
lymph		 SRR391845
embryo		 SRR042469
lymph		 SRR1509750
spermatogonia		 SRR042464
thymus		 SRR248526
Thy1-_somatic_testes_cells		 SRR391847
embryo		 SRR042465
spleen		 SRR042466
spleen		 SRR391846
embryo		 SRR042468
lymph		 SRR042472
lymph		 SRR060845
brain		 SRR073954
blood		 SRR248524
Thy1+_spermatogonia		 SRR042477
brain		 SRR390297
fibroblast		 SRR042459
blood		 SRR065052
jejunum		 SRR553582
brain		 SRR553584
heart		 SRR065056
jejunum		 SRR1509747
oocyte		 SRR206940
brain		 SRR248525
Thy1-_somatic_testes_cells		 SRR042457
bone marrow		 SRR042487
spleen		 SRR065054
jejunum		 SRR065055
jejunum		 SRR206939
brain		 SRR248523
Thy1+_spermatogonia		 GSM475281
testes		 SRR042475
fibroblast		 SRR042483
muscle		 SRR042484
salivary gland		 SRR248527
spermatogonia		 SRR037922
embryo		 SRR037928
embryo		 SRR038744
brain		 SRR039186
fibroblast		 SRR042461
bone marrow		 SRR042462
bone marrow		 SRR042463
spleen		 SRR042467
spleen		 SRR042473
lymph		 SRR042478
lung		 SRR042480
kidney		 SRR059765
thymus		 SRR065046
liver		 SRR065047
liver		 SRR065053
jejunum		 SRR069809
Type_A_spermatogonia		 SRR095855BC2
heart		 SRR206941
brain		 SRR345204
brain		 SRR553585
kidney		 SRR553602
sertoli_cells		 GSM509275
testes		 GSM510444
brain		 SRR037905
brain		 SRR037921
embryo		 SRR037924
embryo		 SRR038741
brain		 SRR039153
muscle		 SRR040488
liver		 SRR042455
blood		 SRR042456
bone marrow		 SRR042460
blood		 SRR042486
ovary		 SRR059766
thymus		 SRR059771
spleen		 SRR065048
liver		 SRR073955
blood		 SRR077864
liver		 SRR095855BC1
heart		 SRR095855BC6
heart		 SRR095855BC7
heart		 SRR206942
brain		 SRR345197
brain		 SRR345202
brain		 SRR014234
ovary		 SRR345201
brain
...............................................................GTCGTCGTGTGACACCAAACA.................................................................................................... 21 0 1 1679.00 1679 452 282 209 209 170 170 64 64 59 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................GTCGTCGTGTGACACCAAACAT................................................................................................... 22 0 1 1485.00 1485 121 409 195 195 157 157 79 79 93 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................GGTGCAGGTTTGGTGTGACACCA................................................................. 23 0 1 197.00 197 0 0 0 0 0 0 0 0 0 0 41 20 0 19 25 8 12 0 4 0 0 0 6 4 0 0 3 0 0 3 1 2 3 0 0 2 3 4 2 0 1 2 1 0 1 0 1 1 1 3 0 0 0 0 1 1 1 0 1 1 0 0 0 2 0 0 1 0 1 1 2 0 2 2 1 1 0 0 1 0 0 0 0 0 0 1 1 0 1 1 0 1 0 0 0 0 0 0 0
...............................................................TTCGTCGTGTGACACCAAACA.................................................................................................... 21 1 2 106.00 212 158 48 2 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTCGTCGTGTGACACCAAACAT................................................................................................... 22 1 1 101.00 101 37 60 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................GTGCAGGTTTGGTGTGACACCA................................................................. 22 0 1 98.00 98 0 0 0 0 0 0 0 0 0 0 1 0 29 0 0 2 0 8 4 4 0 7 0 0 4 6 1 5 4 1 0 0 0 0 2 0 1 0 2 0 0 0 1 3 2 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 1 1 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................GCCGTCGTGTGACACCAAACA.................................................................................................... 21 1 1 94.00 94 90 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................GTCGTCGTGTGACACCAAACATT.................................................................................................. 23 1 1 78.00 78 13 13 10 10 8 8 8 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................CGGTGCAGGTTTGGTGTGACACCA................................................................. 24 0 1 74.00 74 0 0 0 0 0 0 0 0 0 0 5 14 0 11 4 17 14 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 0 3 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................GTCGTCGTGTGACACCAAACC.................................................................................................... 21 1 1 70.00 70 0 2 0 0 0 0 34 34 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................GTCGTCGTGTGACACCAAACATC.................................................................................................. 23 1 1 56.00 56 17 11 4 4 4 4 4 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................GTCGTCGTGTGACACCAAACATA.................................................................................................. 23 1 1 55.00 55 4 14 5 5 5 5 5 5 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................GTCGTCGTGTGACACCAAAC..................................................................................................... 20 0 1 52.00 52 22 7 5 5 5 5 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................GGTGCAGGTTTGGTGTGACACCAC................................................................ 24 0 1 51.00 51 0 0 0 0 0 0 0 0 0 0 1 10 0 2 0 3 6 0 1 0 0 0 0 0 0 0 3 0 0 1 2 1 0 4 0 1 0 1 0 0 2 1 0 0 0 3 1 1 0 0 0 0 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
................................................................TCGTCGTGTGACACCAAACAT................................................................................................... 21 0 1 47.00 47 13 6 4 4 4 4 4 4 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................TCGTCGTGTGACACCAAACA.................................................................................................... 20 0 1 46.00 46 19 7 1 1 7 7 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................CTAGGTGCAGGTTTGGTGTGACACCA................................................................. 26 3 1 45.00 45 0 0 0 0 0 0 0 0 0 42 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................GTCTTCGTGTGACACCAAACA.................................................................................................... 21 1 1 39.00 39 26 11 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................GCCGTCGTGTGACACCAAACAT................................................................................................... 22 1 1 36.00 36 31 0 1 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................CTACGGTGCAGGTTTGGTGTGACACCA................................................................. 27 2 1 34.00 34 0 0 0 0 0 0 0 0 0 34 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................TGCAGGTTTGGTGTGACACCA................................................................. 21 0 1 26.00 26 0 0 0 0 0 0 0 0 0 0 1 2 3 0 0 0 0 1 4 1 0 0 0 1 2 2 1 1 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................GTCTTCGTGTGACACCAAACAT................................................................................................... 22 1 1 26.00 26 10 16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................TCGTCGTGTGACACCAAACATG.................................................................................................. 22 0 1 24.00 24 4 7 1 1 3 3 1 1 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................GTGCAGGTTTGGTGTGACACCAC................................................................ 23 0 1 23.00 23 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0 0 2 0 4 0 2 0 2 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TGGTGCAGGTTTGGTGTGACACCA................................................................. 24 1 1 21.00 21 0 0 0 0 0 0 0 0 0 0 6 1 0 3 3 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................GTCGTCGTGTGACACCAAACAA................................................................................................... 22 1 1 19.00 19 11 6 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................GTCGTCGCGTGACACCAAACAT................................................................................................... 22 1 1 18.00 18 0 5 0 0 5 5 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TGTGCAGGTTTGGTGTGACACCA................................................................. 23 1 1 17.00 17 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 1 0 1 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 2 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................AGGTGCAGGTTTGGTGTGACACCA................................................................. 24 1 1 16.00 16 0 0 0 0 0 0 0 0 0 0 2 0 0 1 2 3 2 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................CTAGGTGCAGGTTTGGTGTGACACCAC................................................................ 27 3 1 16.00 16 0 0 0 0 0 0 0 0 0 8 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................ATAGGTGCAGGTTTGGTGTGACACCA................................................................. 26 2 1 16.00 16 0 0 0 0 0 0 0 0 0 15 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................GTCGTCGTGTGCCACCAAACAT................................................................................................... 22 1 1 15.00 15 0 0 0 0 6 6 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................GTCGTCGTGTGCCACCAAACA.................................................................................................... 21 1 1 15.00 15 1 0 0 0 7 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................GCCGTCGTGTGACACCAAACATT.................................................................................................. 23 2 1 14.00 14 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................CTAGTGCAGGTTTGGTGTGACACCA................................................................. 25 2 1 14.00 14 0 0 0 0 0 0 0 0 0 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................GTCGTCGTGGGACACCAAACAT................................................................................................... 22 1 1 11.00 11 0 1 0 0 0 0 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................GTGGTCGTGTGACACCAAACAT................................................................................................... 22 1 1 11.00 11 1 4 1 1 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................GTCGTCGGGTGACACCAAACAT................................................................................................... 22 1 1 10.00 10 0 2 0 0 0 0 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................GTCGTCGCGTGACACCAAACA.................................................................................................... 21 1 1 10.00 10 4 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................GTCGCCGTGTGACACCAAACA.................................................................................................... 21 1 1 10.00 10 1 1 2 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................GTCGTAGTGTGACACCAAACAT................................................................................................... 22 1 1 9.00 9 0 0 1 1 1 1 2 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................CTCGTCGTGTGACACCAAACA.................................................................................................... 21 1 1 8.00 8 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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...............................................................................................TGGTGCTGGTTTGGTGTGACTCCA................................................................. 24 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................GTCGCCGTGCGACACCAAACAT................................................................................................... 22 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....GAAGTGCCGTGACGGAC.................................................................................................................................................................. 17 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................GCCGTAGTGTGACACCAAACAT................................................................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................GTCGTAGTGAGACACCAAACAT................................................................................................... 22 2 4 0.50 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................GTCGTCGTGTGGCACCAAACA.................................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................CTCGTCGTGAGACACCAAACAT................................................................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................TCGTCCTGTGACACCAAACA.................................................................................................... 20 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................GCCCTCGTGTGACACCAAACA.................................................................................................... 21 2 4 0.50 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................GTCCTCGTGTGACACCAAACATC.................................................................................................. 23 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................ATCATCGTGTGACACCAAACAT................................................................................................... 22 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................GGGGGCGGGGTCGTCGTCTGAGACCAT....................................................................................................... 27 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...............................................................GTCGTCGGGTGACAACAAACAT................................................................................................... 22 2 4 0.50 2 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
mm10 chr11:70234667-70234850 + mmu-mir-497a GGGGTCTTCACGGCACTGCC-TGTGCTGTCTTCCTCTCGACCCACCCC----AGTCCTGCCCCCGCCCCAGCAGCACACTGTGGTTTGTACGGCACTGTGGCCACGTCCAAACCACACTGTGGTGTTAGAGCGAGGGTATGGGAGGCACCGATGAG-CCTGGCCCTGGGAGGCCACCCTGGAGAAGCAac
cavPor3 scaffold_61:9616727-9616899 + GGGGTCTTCAC---------TTG-GCT---CTCTTCTTAGCCCACCCT----AGTCCTGCTCCCGCCCCAGCAGCACACTGTGGTTTGTACGGCACTGTGGCCACGTCCAAACCACACTGTGGTGTTAGAGCGAGGGTGGGGGAGGCACCGCGGAGGCCCGGCCCTGGGAGGCCGCCCTGGAGAAGCAAC
dipOrd1 scaffold_7868:10248-10430 - GAGGATTTCACAGCCCTGTGTTGTATT---TTCCTCTCAATCCATCCCAGCCAGTCCTGCTCCCGCCCCAGCAGCACACTGTGGTTTGTACGGCACTGTGGCCACGTCCAAACCACACTGTGGTGTTAGAGCGAGGGTAGGGGACACACAGCTGAGGCCTGGGCCTAGAAAGCCATTCTGGAGAAG----
hetGal2 Unknown ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ochPri2 Unknown ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
oryCun2 chr19:12026135-12026320 + GGGGTCTTCACAGCGCTGCCTTGTGTCTTCTTCCTCTCAACCCACCCG----AATCCTGCTCCCGCCCCAGCAGCACACTGTGGTTTGTACGGCACTGTGGCCACGTCCAAACCACACTGTGGTGTTAGAGCGAGGGTGGGGGAGGCACCGCCGAGGCTTGGCCCTGGGAGGCCACCCTGGAGAAGTGAC
rn5 chr10:56589078-56589263 + rno-mir-497 GGGGTCTTCATGGCACTGTCTTGTGCTGTCTTCCTCTCGACACACCCC----AGTCCTGCTCCCGCCCCAGCAGCACACTGTGGTTTGTACGGCACTGTGGCCACGTCCAAACCACACTGTGGTGTTAGAGCGAGGGTATGGGAGGCACCGCTGAGGCCTGGCCCTGGGAGGCCACCATGGAGAacacac
speTri2 JH393405:289474-289657 - GGGGTCTTCATAGCACCATCTTGTGCTCTATTCCTCTCAACCCACCC------GTCCTGCCCCCGCCCCAGCAGCACACTGTGGTTTGTACGGCACTGTGGCCACGTCCAAACCACACTGTGGTGTTAGAGCGAGGGTGGGGGAGGCACCGCTGAGGCCTGGCCCTGGAAGGCCACCCTGGAGAAGCGAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
mm10
GGGGTCTTCACGGCACTGCC-TGTGCTGTCTTCCTCTCGACCCACCCC----AGTCCTGCCCCCGCCCCAGCAGCACACTGTGGTTTGTACGGCACTGTGGCCACGTCCAAACCACACTGTGGTGTTAGAGCGAGGGTATGGGAGGCACCGATGAG-CCTGGCCCTGGGAGGCCACCCTGGAGAAGCAacSizeHit CountTotal NormTotalSRR042455
blood		SRR042459
blood		SRR042460
blood		SRR069834
blood		SRR073954
blood		SRR073955
blood		SRR525238
Blood		SRR525237
Blood		SRR042456
bone marrow		SRR042457
bone marrow		SRR042461
bone marrow		SRR042462
bone marrow		GSM317181
brain		GSM317182
brain		GSM361394
brain		GSM361395
brain		GSM361398
brain		GSM361399
brain		GSM361402
brain		GSM361407
brain		GSM361408
brain		GSM361415
brain		GSM361430
brain		GSM510444
brain		SRR037904
brain		SRR037905
brain		SRR037906
brain		SRR037907
brain		SRR038741
brain		SRR038744
brain		SRR039610
brain		SRR042477
brain		SRR060845
brain		SRR206939
brain		SRR206940
brain		SRR206941
brain		SRR206942
brain		SRR345196
brain		SRR345197
brain		SRR345198
brain		SRR345199
brain		SRR345200
brain		SRR345201
brain		SRR345202
brain		SRR345203
brain		SRR345204
brain		SRR345205
brain		SRR345206
brain		SRR345207
brain		SRR037919
embryo		SRR037920
embryo		SRR037921
embryo		SRR037922
embryo		SRR037923
embryo		SRR037924
embryo		SRR037925
embryo		SRR037926
embryo		SRR037927
embryo		SRR037928
embryo		SRR037929
embryo		SRR037930
embryo		SRR391845
embryo		SRR391846
embryo		SRR391847
embryo		SRR391848
embryo		SRR391849
embryo		SRR391850
embryo		SRR391851
embryo		SRR391852
embryo		SRR391853
embryo		SRR116846
epididymis		GSM566419
fibroblast		GSM566420
fibroblast		SRR039183
fibroblast		SRR039184
fibroblast		SRR039185
fibroblast		SRR039186
fibroblast		SRR042475
fibroblast		SRR390297
fibroblast		SRR390298
fibroblast		SRR042484
salivary gland		SRR042476
heart		SRR095853
heart		SRR095855BC1
heart		SRR095855BC10
heart		SRR095855BC2
heart		SRR095855BC3
heart		SRR095855BC4
heart		SRR095855BC5
heart		SRR095855BC6
heart		SRR095855BC7
heart		SRR095855BC8
heart		SRR095855BC9
heart		SRR065052
jejunum		SRR065053
jejunum		SRR065054
jejunum		SRR065055
jejunum		SRR065056
jejunum		SRR042480
kidney		SRR040488
liver		SRR042479
liver		SRR065045
liver		SRR065046
liver		SRR065047
liver		SRR065048
liver		SRR065049
liver		SRR065050
liver		SRR077864
liver		SRR077865
liver		SRR077866
liver		SRR042478
lung		SRR042468
lymph		SRR042469
lymph		SRR042470
lymph		SRR042472
lymph		SRR042473
lymph		SRR039152
muscle		SRR039153
muscle		SRR039154
muscle		SRR042483
muscle		SRR014234
ovary		SRR037896
ovary		SRR037897
ovary		SRR037898
ovary		SRR037899
ovary		SRR042486
ovary		SRR042481
pancreas		SRR065058
pancreas		SRR065059
pancreas		SRR042482
skin		SRR042463
spleen		SRR042465
spleen		SRR042466
spleen		SRR042467
spleen		SRR042471
spleen		SRR042487
spleen		SRR059768
spleen		SRR059769
spleen		SRR059770
spleen		SRR059771
spleen		SRR059772
spleen		SRR059773
spleen		GSM475281
testes		GSM509275
testes		GSM509279
testes		SRR014231
testes		SRR014235
testes		SRR014236
testes		SRR028731
testes		SRR037900
testes		SRR037901
testes		SRR037902
testes		SRR037903
testes		SRR042485
testes		SRR051939
testes		SRR051940
testes		SRR069809
Type_A_spermatogonia		SRR069810
pachytene_spermatocytes		SRR069811
round_spermatid		SRR248523
Thy1+_spermatogonia		SRR248524
Thy1+_spermatogonia		SRR248525
Thy1-_somatic_testes_cells		SRR248526
Thy1-_somatic_testes_cells		SRR248527
spermatogonia		SRR363956
testes		SRR363957
testes		SRR363958
testes		SRR363959
testes		SRR363960
testes		SRR363963
testes		SRR363964
testes		SRR553582
brain		SRR553583
cerebellum		SRR553584
heart		SRR553585
kidney		SRR553602
sertoli_cells		SRR553603
spermatids		SRR553604
spermatocytes		SRR553586
testes		SRR042464
thymus		SRR059765
thymus		SRR059766
thymus		SRR059767
thymus		SRR032476
uterus		SRR032477
uterus		SRR1509747
oocyte		SRR1509748
spermatozoa		SRR1509749
zygote		SRR1509750
spermatogonia		SRR1509751
foetal_primordial_germ_cells		SRR1647947
Dgcr8_WT_leptotene_zygotene_spermatocytes		SRR1647948
Dgcr8_cKO_leptotene_zygotene_spermatocytes		SRR1647949
Dicer_WT_leptotene_zygotene_spermatocytes		SRR1647950
Dicer_cKO_leptotene_zygotene_spermatocytes		SRR1647951
Dgcr8_WT_pachytene_spermatocytes		SRR1647952
Dgcr8_cKO_pachytene_spermatocytes		SRR1647953
Dicer_WT_pachytene_spermatocytes		SRR1647954
Dicer_cKO_pachytene_spermatocytes
....................................................................CAGCAGCACACTGTGGTTTGT.....................................................................................................21156619.00566191001381831001831310000000006637372175423034822622813281181461132939830428853813497618573526418148534231141654559226942589428140949885417857352280236153177527262599511262443380151066403013323312741105612450366313212148220175024283814878052047283101313704913361736453440292992023623312215021647413500018001160005631334764003930473153454931154300000002605351553071727203506242011145200000202189154499596268290
....................................................................CAGCAGCACACTGTGGTTTGTA....................................................................................................22132024.0032024000030323201185000000000001273723153798823622323868198416410115031331026771551341072310434170235571818707631319953212370856565157256042944913418320416099003115443515832079811818255241631518482218162315131096951020111119137042429062131037127931931810141272180391022713198241150491491112000728114000271461822750162691071577861383009500000002964511843546197554502106957530000012630114235701772162
....................................................................CAGCAGCACACTGTGGTTTGTAA...................................................................................................2315821.00582110006500002800000000000538271531832738373014472041100000065923333283142752814115121167541617112221181173363612293020100023591530165060233517209111462013205101092249660000004423452002827642630214011041003000338001000053750620930563981935700000004718920434216901001248600002830760113
....................................................................CAGCAGCACACTGTGGTTTGTAT...................................................................................................2313341.00334100003300100711000000000180944691517161715625520010009261111121010102281211261375210217411401439321253181111161100200009803112123401438107181462240331243413473001002325251012930363123220200203033300020000600041288108191780496500000007311016121200002021370000012531004
....................................................................CAGCAGCACACTGTGGTTTG......................................................................................................2011999.00199930000000000200000000000111519376795211736656127426282696037371953004011396182156811663473315219121211000000026021004015800241438300121315334001202631352001012210319232010075011000931000000231001175335581000000010168124224000066550000050171111
.....................................................................AGCAGCACACTGTGGTTTGTAC...................................................................................................2211870.001870000001000000000000000001005252712976800125000000772514061412615816022541722283132281554413215111940001100400310200000000012001411011020924210000011101010015817165000100000000083100000161420044853222410000000711152111000065610000010031001
.....................................................................AGCAGCACACTGTGGTTTGT.....................................................................................................2011771.001771000000000002000000000002441274951914141940125202054132429171911156180261104235643172187281221091002011210000010050001117000110080100101037114000000115181211012135111371000000130111280010000212141000111031233000000039340010000042400000010000001
....................................................................CAGCAGCACACTGTGGTT........................................................................................................1811209.00120900000000000000000000000501103260000001697103745312042012014932711141100000000000100000000000000000000000200000000000000006251000003013000101100000030000000000000000030300000000333001000000420000001100000
....................................................................CAGCAGCACACTGTGGTTTGTAG...................................................................................................2311061.001061000000000003000000000002325211081220419620000000110010301625242430397511676156109002000000000851460610151711000013000000030240000044200032050430000000000000110060000010000010841727600000006014715410636155000021110000000000000
.....................................................................AGCAGCACACTGTGGTTTGTA....................................................................................................211995.009951000000000020000000000053317114111015101125050003543205042295133644129153183511712512250010010309003120102100001000620010001123255000001418171001192313020010310000002300000028121000800013410000000044571021000026230000030101002
....................................................................CAGCAGCACACTGTGGTTTGTT....................................................................................................221935.00935000000000001000000000001184293182314171072012190000009358070100532362115235822401100060000000021202020002400020103001004014312361000001955000138120110000000012000110000001342000201124920000000264824370001000014500000332101116
....................................................................CAGCAGCACACTGTGGTTTGTAC...................................................................................................231882.008820000130000000000000000040311153478103113000000007001085111686215258610883543279821513152010101021001200000000000320020000001001820000042300012141321000000000000290001000121000820101430000000412450000000022191010012280000
....................................................................CAGCAGCACACTGTGGTTT.......................................................................................................191731.00731601010000000000000000001603218330146131412163174216111676146000024302330105520101120001020003800000000000001100400001000010100211161315800000502530010104002000200000000010000500212100000000051212151000000022220000000000000
...................................................................CCAGCAGCACACTGTGGTTTGT.....................................................................................................221602.00602000000000000000000000001222431000000000000000000000000020003203000100000000000000005620000000000000000000000000000000000000000100000000000000000020010000100000000000000000000000000000000000000000000000
....................................................................CAGCAGCACACTGTGGTTTGA.....................................................................................................211595.005950000000000000000000000074325175111100302280011514811144110200415711914120100000003000000000020000100011010020801000100281630130000061412000722228800000001000002200000017600002211000100000005371170000000014170000000010001
..........................................................................................CGGCACTGTGGCCACGTC..................................................................................181455.00455100000000001000000000000000001010000008730950110132030100000000000002000002000000000000201100012100010000000000000100000109231000003113000009200000010000000000000100145291632000000015221418370720000000000000001000
............................................................................................................CAAACCACACTGTGGTGTTAGA............................................................221443.00443000000000000000000000001005012550004030000000000000781948474165361802001151213000100202300000000000000000000000000001292500000000000031000000000000000000150000000000001000111220000000401310200000020000000000000
....................................................................CAGCAGCACACTGTGGTTTGTAAA..................................................................................................241294.002940000010000000000000000023357001210010000000021100000101661101947631020102141000000090000000001000001010011010000215300000001000420101200000200000003000400003300001110011410000000151121000000670000010200000
...................................................................CCAGCAGCACACTGTGGTTTGTA....................................................................................................231252.0025200000000000000000000000100000000000000000000000000000000001107510011000000000000002330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
.......................................................................CAGCACACTGTGGTTTGT.....................................................................................................181242.0024200000000000000000000000241260487000001000000230020000003204690120100000101000000000000000001000000000000000020010000001000001000000000000000000500000001000000000000000000001151234242120000220000000000000
....................................................................CAGCAGCACACTGTGGTTTGTAGA..................................................................................................241239.002390000000000000000000000020000220000511000000000000000011003140023000234200000009000041301224400001010000000010110000000100001000000000000000000000500000000000000296200000001746392490000000130000000000000
....................................................................CAGCAGCACACTGTGGTTTGTAATC.................................................................................................252215.504310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000015233419716200000000
.....................................................................AGCAGCACACTGTGGTTTGTAA...................................................................................................221206.00206000000000000000000000002424802101001000000000342120110014061010501023000010000000100000000010000100005100000004147000001110610002110270000011000000120000000010000210000000000000120010000000970020000000000
....................................................................CAGCAGCACACTGTGGTTTGC.....................................................................................................211205.0020500000000000000000000000260310002000000103100143311020011020101415266111000000010000000000000000000000000120000000045120000002110100110000000000000000040000000401000000001000000000000000000000500000001000000
..........................................................................................................TCCAAACCACACTGTGGTGTTAG.............................................................231197.0019700000000000000000000000813015550016540000000200000010017244151829400000000000000010000003051030300000000000000000010000000000005400000000000000000010000000000000000002300000000302100100000000000000000000
...........................................................................................................CCAAACCACACTGTGGTGTTAG.............................................................221192.0019200000000000000000000000602113430051240000000000000200313194420253220001120000000000000000100001000000000000000003240000000000001010100000000000000080000000000001000127610000000200600000000100000000000010
....................................................................CAGCAGCACACTGTGGTTTGTAGT..................................................................................................241172.0017200000000000000000000000000003341030330000000000000000152203511000000002000000000010112100032000000210000000300100000000000000000000000000000000003000000000000023350000000013122926120000000220000000000000
....................................................................CAGCAGCACACTGTGGT.........................................................................................................171170.00170000000000000000000000000000056200000084110567151900000000000020264010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000050201510000000010501000000000000000000000
..................................................................................................................................GCGAGGGTATGGGAGGCACCGATGAG-CCTGGCCCTGGGAGGCCACCCTGGAG.......521140.00140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000029111000000000000000000000000000
....................................................................CAGCAGCACACTGTGGTTTGG.....................................................................................................211137.0013700000000000000000000000100053001100001020126213102000011515041824101000000000000000000000000000000000000000000002110000001100000000000000000000000020000000120000000000100000000210000000000000000010000001
...........................................................................................................CCAAACCACACTGTGGTGTTAGA............................................................231137.001370000000000000000000000040111000000111000000000000000042521351423400000013200000000500000030000000000000000000004130000000000002100000000000000000000000000000000000000010000000001100000000000000000000000
.....................................................................AGCAGCACACTGTGGTTTG......................................................................................................191125.001251000001000000000000000050250011000000731020545221400000000162001002000100000000006001000000100000000000000000000000005870000002021000003100000010000000101000000100000000000020100000000410000000100001
........................................................................AGCACACTGTGGTTTGTA....................................................................................................181118.00118000000000000000000000007011241070000220000000000000020368031522301000000000000000000000000000000000000000000000050000000000001000000000000000000010000000000000000110100000000332100000000000000000000000
....................................................................CAGCAGCACACTGTGGTTTGTATC..................................................................................................241116.0011600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000924573400000000
.....................................................................AGCAGCACACTGTGGTTTGTACA..................................................................................................231105.001050000000000010000000000013111110020000000000003030000000231217000010000000000000001300000000000000002021000000008000003570000112045000000000000020000000000000100000000000000110000000000650000000000000
.......................................................................CAGCACACTGTGGTTTGTA....................................................................................................191101.0010100000000000000000000000200111111100000000000000100000000000041101321100000000000000000000000100000000000000000000000000000000000000000000000000020000000000000000000100000000811131412240000000000000000000
.....................................................................AGCAGCACACTGTGGTTTGTAT...................................................................................................22190.0090000000000000000000000007120000001000000000003040000000020441011000100010000000000000000000000001000010000000002300000001000040112400000000000001000000000000001000001000000000000000000001060000000000000
....................................................................CAGCAGCACACTGTGGTTTGTAAT..................................................................................................24288.5017700001000000100000000000804213130000010000000000000220577551727435100000031000000000000000000000000000100000012120000001011002102000000000000000070030000110000010002300000000342130110000640000000000000
............................................................................................................CAAACCACACTGTGGTGTTAG.............................................................21174.00740000000000000000000000011210103101010000000000000000024113137110110000000001000000000000000000000000100000000020000000100001000000000000000100070000000000002000214020000000100000000000010000000000000
.........................................................................GCACACTGTGGTTTGTA....................................................................................................17264.00128000012000000000000000000000037341800000000000000000000000000000000000001000000000000002011011210000000000000000010000000000000000000000000000000000000000000000000111810000000480100000000000000000000000
....................................................................CAGCAGCACACTGTGGTTTGTC....................................................................................................22158.0058000031000000000000000002011010000111000000001100011102240347520000010001010000000000000000000000000000000000010000000000102120000000000000000010000000100000000000000000000000000000000000000000000000
......................................................................GCAGCACACTGTGGTTTGT.....................................................................................................19155.0055000000000000000000000009122031100000050000000000001001230117000000000000000000000000100005400010000000000000000000000000000100000000000000000000000000010000000000000000000010100000000000000000000000
.....................................................................AGCAGCACACTGTGGTTTGTACT..................................................................................................23155.0055000000000000000000000006020111100000100000000010000000842058000010000000000000000000000000000000000000000001005000000000001000100000000000000000000000000000100000000000000000000000000040000000000000
....................................................................CAGCAGCACACTGTGGTTTGTATT..................................................................................................24253.501070000000100000000000000030210112000001000000000000000012214810121100000000000000000000001010000000001000000004153000000000003202011000000000000090030000220000001010400000000221200000000440000000000000
....................................................................CAGCAGCACACTGTGGTTTGTG....................................................................................................22150.0050000000000000000000000005113001100010200000001000102101300133200110000000000000000000000000000000000000000001140000000000000300000000000000000000000000000000000000010000000000002000000100000000010001
..........................................................................................................TCCAAACCACACTGTGGTGTTAGA............................................................24148.00480000000000000000000000000000002000001000000000000010127122435100000001100000000000000030000000000000000000000000000000000001000000000000000000000000000000000000000100000000000000000000000000000000000
....................................................................CAGCAGCACACTGTGGTTTGTACT..................................................................................................24144.0044000000000000000000000000010032100010100000000000000000250137200000000010000000000000000000000000000000000002110000000000001000000000000000000000000000000000000102100000000011100000000010000010000000
....................................................................CAGCAGCACACTGTGGTTTGTAATA.................................................................................................25243.508700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000361393800000000
....................................................................CAGCAGCACACTGTGGTTTGTATA..................................................................................................24141.00410000000000000000000000000000000000000000000000000000001000220101000100000000000001000000001000000000000000000010000001000000000000000000000000000000000000000001001000000000200100000002113115100000000
....................................................................CAGCAGCACACTGTGGTTTA......................................................................................................20136.0036000000000000000000000001000000110000000350000030300000100000100000001000000000000000000000000000000000000000011000013120000001000000000000000030000000000000100000000000000000000000000200000000000000
....................................................................CAGCAGCACACTGTGGTTTGTACG..................................................................................................24133.0033000000000000000000000001010001100000100000000000000000020012002000143100000000000000000000000000000000000001000000001000000000001000000100000000020000010000000001000000000100000000000210000000000000
....................................................................CAGCAGCACACTGTGGTTTGTTA...................................................................................................23133.0033000000000000000000000008020000000000000000001000100000000023000000000000000000000000000000000000000000000003131000002100000000000000000000000010000000000000000000100000000001100000000010000000000000
......................................................................GCAGCACACTGTGGTTTGTA....................................................................................................20123.0023000000000000000000000004000012200000000000000000000001221012000010000000000000000000010010200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................CCAGCAGCACACTGTGGTTTG......................................................................................................21121.00210000000000000000000000000000000000000000000000000000000000000000000000000000000000210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................CCAAACCACACTGTGGTGTTG..............................................................21121.0021000000000000000000000007024001000000000000000000000000111000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000201000000000000000000000000
...................................................................CCAGCAGCACACTGTGGTTTGTAA...................................................................................................24120.0020000000000000000000000000013000000000000000000000000000010001011210000000000000000070000000000000000000000001000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................AGCAGCACACTGTGGTTT.......................................................................................................18118.0018000000000000000000000000001000000000000000000010000000000000000000000000000000003000000000000000001000000002000000010212000000001000001000000010000000000000100000000000000000000000000000000000000000
...........................................................................................................CCAAACCACACTGTGGTGTTAGT............................................................23118.0018000000000000000000000000000010000000000000000000000000100022000000000200000000000000020000000000000000000001030000000000000000000000000000000020000000000000000020000000000000000000000000000000000000
........................................................................AGCACACTGTGGTTTGT.....................................................................................................17217.0034000000000000000000000000000063500000101000600000000000000000000100000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000100300000000130100010000000000000000000
....................................................................CAGCAGCACACTGTGGTTTGTGA...................................................................................................23117.0017000000000000000000000002012000000000000000000000000000000010000001000000000000000000000000000000000000010001421000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................AGCAGCACACTGTGGTTTGTT....................................................................................................21215.5031000000000000000000000008011100200000200000010000010000000022200000000000000000000000000000000000000000000001001000001000000000001000000000000000000000000000000001000000000101000000000000000000010000
.........................................................................GCACACTGTGGTTTGTAC...................................................................................................18215.0030000000000000000000000002000043200000000000000000000001480041000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................CAGCAGCACACTGTGGTTTGTCA...................................................................................................23115.0015000000000000000000000001000000000000000000000010000000001321101000000010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000010000000000010000000000000
..........................................................................................................TCCAAACCACACTGTGGTGTT...............................................................21115.0015000000000000000000000003021000000000000000000001000000000000000000000000000000000000010000000000000000000002010000000000001010000000000000000010000000000001000000000000000000000000000000000000000000
..........................................................................................................TCCAAACCACACTGTGGTGTTAGAATC.........................................................27114.00140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001400000000
..................................................................................................................................GCGAGGGTATGGGAGGCACC........................................20113.0013000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000030000010000000000000000001000000000000010310001
.....................................................................AGCAGCACACTGTGGTTTGA.....................................................................................................20213.0026000000000000000000000001111100000000000108020000000000010110000000000000000000000000000000000000000000000002010000001010000000000000000000000000000000000000000000000000000010000000000100000000000000
..........................................................................................................TCCAAACCACACTGTGGTGTTG..............................................................22113.0013000000000000000000000006003000000101000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.........................................................................GCACACTGTGGTTTGT.....................................................................................................16412.50500000000000000000000000000000000000000000000000000000000000000000000000000000005000010010003300000000000000000000000000000000000000000000000000000000000000000001024100000002240100020000000000000000000
..........................................................................................................TCCAAACCACACTGTGGTGTTA..............................................................22112.0012000000000000000000000001100000000000000000000000000000151000100000000000000000000000000000000000000000000000010000000000000000000000000000000010000000000000000000000000000000000000000000000000000000
............................................................................................................CAAACCACACTGTGGTGTTA..............................................................20112.0012000000000000000000000001000000000000100000002000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000002100002000000000000000000000000000000000000
....................................................................CAGCAGCACACTGTGGTTTT......................................................................................................20412.0048000000000000000000000002011000000000003402414101200001110100000000000000000000000000000000000000001000000000003000001200000004100000000000000030000000000000000000000000000000000000000120000000000000
........................................................................AGCACACTGTGGTTTGTAC...................................................................................................19111.0011000000000000000000000001000010000000000000000000000000020120110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000
.....................................................................AGCAGCACACTGTGGTTTGTACAA.................................................................................................24111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002010000000000000001010000000030000000000000000000000000000000000000000000000000000000210000000000000
............................................................................................................CAAACCACACTGTGGTGTTAGAA...........................................................23111.0011000000000000000000000002010000000000000000000000000000000040000000000000000000000000000000000000000000000001010000000000000000000000000000000020000000000000000000000000000000000000000000000000000000
.....................................................................AGCAGCACACTGTGGTTTGTAATC.................................................................................................24211.00220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010021000000000
....................................................................CAGCAGCACACTGTGGTTTGTTT...................................................................................................23510.8054000000000000000000000005000000110000000000002240100000320031120000000000000000000000000000000000000000000006132000000010000001000000000000000040000000000000000000000000000000100000000610000000000000
.........................................................................GCACACTGTGGTTTGTAA...................................................................................................18910.56950000000000000000000000012000185600000100000000000000101107111217100000000000000000400000000000000000000100000000000000000000001000000000000000000000000000200000000000100000000110000000000000000000000000
....................................................................CAGCAGCACACTGTGGTTA.......................................................................................................19310.3331000000000000000000000000000000000000035003031100000001200000100100000000000000000000000000000000001000000000000000001410000000000000000000000010000000000000000000000000000000000000000110000000000000
...........................................................................................................CCAAACCACACTGTGGTGTTA..............................................................21110.0010000000000000000000000000000010100100000000000000000000010011000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000100000000000000000000100000000000000
...........................................................................................................CCAAACCACACTGTGGTGTT...............................................................20110.0010000000000000000000000001000000000000005010100000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................CCAGCAGCACACTGTGGTTTGTT....................................................................................................23110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................GCGAGGGTATGGGAGGCA..........................................18110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000090000000000000
....................................................................CAGCAGCACACTGTGGTTTGTAGAA.................................................................................................2529.50190000000000000000000000000000000000000000000000000000000100000000000000100000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101030010000000000000000000
.....................................................................AGCAGCACACTGTGGTTTGTAG...................................................................................................2219.009000000000000000000000002010000000000000000000000000000000000000000000000000000000000010100000000000000000001000000000000000000000000000000000000000000000000000000000000000002100000000000000000000000
....................................................................CAGCAGCACACTGTGGTTTGTACA..................................................................................................2419.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000002000001100000000000000000000000010000000000000010000000000000010000000000010000000000000
.....................................................................AGCAGCACACTGTGGTTTGTACG..................................................................................................2319.009000000000000000000000000000000000000000000000000000000100000000010001000000000000000000000000000000000000100011000000010000000010000000000000000000000000000000000010000000000000000000000000000000000
cavPor3
GGGGTCTTCAC---------TTG-GCT---CTCTTCTTAGCCCACCCT----AGTCCTGCTCCCGCCCCAGCAGCACACTGTGGTTTGTACGGCACTGTGGCCACGTCCAAACCACACTGTGGTGTTAGAGCGAGGGTGGGGGAGGCACCGCGGAGGCCCGGCCCTGGGAGGCCGCCCTGGAGAAGCAACSizeHit CountTotal NormTotal
No Reads
dipOrd1
GAGGATTTCACAGCCCTGTGTTGTATT---TTCCTCTCAATCCATCCCAGCCAGTCCTGCTCCCGCCCCAGCAGCACACTGTGGTTTGTACGGCACTGTGGCCACGTCCAAACCACACTGTGGTGTTAGAGCGAGGGTAGGGGACACACAGCTGAGGCCTGGGCCTAGAAAGCCATTCTGGAGAAG----SizeHit CountTotal NormTotal
No Reads
hetGal2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
ochPri2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
oryCun2
GGGGTCTTCACAGCGCTGCCTTGTGTCTTCTTCCTCTCAACCCACCCG----AATCCTGCTCCCGCCCCAGCAGCACACTGTGGTTTGTACGGCACTGTGGCCACGTCCAAACCACACTGTGGTGTTAGAGCGAGGGTGGGGGAGGCACCGCCGAGGCTTGGCCCTGGGAGGCCACCCTGGAGAAGTGACSizeHit CountTotal NormTotalGSM1528820
Adult_testes		GSM1528821
Adult_testes_Mili_IP
....................................................................CAGCAGCACACTGTGGTTTGT.....................................................................................................2112367.002367235215
....................................................................CAGCAGCACACTGTGGTTTGTAT...................................................................................................231251.002512510
.....................................................................AGCAGCACACTGTGGTTTGT.....................................................................................................201209.002092090
....................................................................CAGCAGCACACTGTGGTTTGTA....................................................................................................22198.0098962
.....................................................................AGCAGCACACTGTGGTTTGTAC...................................................................................................22165.0065650
....................................................................CAGCAGCACACTGTGGTTTG......................................................................................................20143.0043412
....................................................................CAGCAGCACACTGTGGTTTGTT....................................................................................................22127.0027270
....................................................................CAGCAGCACACTGTGGTTT.......................................................................................................19124.0024231
....................................................................CAGCAGCACACTGTGGTTTGTAC...................................................................................................23124.0024240
.....................................................................AGCAGCACACTGTGGTTTGTAT...................................................................................................22117.0017170
....................................................................CAGCAGCACACTGTGGTTTGTAA...................................................................................................2319.00990
....................................................................CAGCAGCACACTGTGGT.........................................................................................................1727.5015150
.....................................................................AGCAGCACACTGTGGTTTGTT....................................................................................................2117.00770
.....................................................................AGCAGCACACTGTGGTTTGTA....................................................................................................2117.00752
...........................................................................................................CCAAACCACACTGTGGTGTTAG.............................................................2215.00550
......................................................................GCAGCACACTGTGGTTTGT.....................................................................................................1915.00550
.....................................................................AGCAGCACACTGTGGTTT.......................................................................................................1814.00440
..........................................................................CACACTGTGGTTTGTAC...................................................................................................1713.00330
....................................................................CAGCAGCACACTGTGGTTTGA.....................................................................................................2113.00330
....................................................................CAGCAGCACACTGTGGTT........................................................................................................1823.00660
....................................................................CAGCAGCACACTGTGGTTTGTAG...................................................................................................2313.00330
............................................................................................................CAAACCACACTGTGGTGTTA..............................................................2013.00321
.........................................................................GCACACTGTGGTTTGT.....................................................................................................1622.00440
.....................................................................AGCAGCACACTGTGGTTTGTAA...................................................................................................2212.00220
............................................................................................................CAAACCACACTGTGGTGTTAGA............................................................2212.00220
....................................................................CAGCAGCACACTGTGGTTTGTAAT..................................................................................................2412.00220
....................................................................CAGCAGCACACTGTGGTTTGTAGT..................................................................................................2412.00220
.....................................................................AGCAGCACACTGTGGTTTGTG....................................................................................................2131.67550
.....................................................................AGCAGCACACTGTGGTT........................................................................................................1721.50330
....................................................................CAGCAGCACACTGTGGTTTGC.....................................................................................................2121.50330
....................................................................CAGCAGCACACTGTGGTTTGTGA...................................................................................................2321.50330
....................................................................CAGCAGCACACTGTGGTTTGTTT...................................................................................................2321.50330
...........................................................................................................CCAAACCACACTGTGGTGTTAGTT...........................................................2411.00110
......................................................................GCAGCACACTGTGGTTTGTA....................................................................................................2011.00110
....................................................................CAGCAGCACACTGTGGTTTGG.....................................................................................................2111.00110
...........................................................................................................CCAAACCACACTGTGGTGTTAGT............................................................2311.00110
.....................................................................AGCAGCACACTGTGGTTTGC.....................................................................................................2021.00220
..........................................................................................................TCCAAACCACACTGTGGTGT................................................................2011.00101
.....................................................................AGCAGCACACTGTGGTTTGTTA...................................................................................................2211.00110
....................................................................CAGCAGCACACTGTGGTTTGTC....................................................................................................2211.00110
..........................................................................CACACTGTGGTTTGTA....................................................................................................1640.75330
....................................................................CAGCAGCACACTGTGGTTTGTGT...................................................................................................2330.67220
........................................................................AGCACACTGTGGTTTGT.....................................................................................................1720.50101
............................................................................CACTGTGGTTTGTAC...................................................................................................1570.29220
.........................................................................GCACACTGTGGTTTGTAT...................................................................................................1890.22220
....................................................................CAGCAGCACACTGTG...........................................................................................................15190.05110
rn5
GGGGTCTTCATGGCACTGTCTTGTGCTGTCTTCCTCTCGACACACCCC----AGTCCTGCTCCCGCCCCAGCAGCACACTGTGGTTTGTACGGCACTGTGGCCACGTCCAAACCACACTGTGGTGTTAGAGCGAGGGTATGGGAGGCACCGCTGAGGCCTGGCCCTGGGAGGCCACCATGGAGAacacacSizeHit CountTotal NormTotalGSM1528817
Adult_testes		GSM1528818
Adult_testes_Mili_IP		GSM1528819
10dpp_testes
....................................................................CAGCAGCACACTGTGGTTTGT.....................................................................................................2115131.005131000
....................................................................CAGCAGCACACTGTGGTTTG......................................................................................................2012385.002385000
....................................................................CAGCAGCACACTGTGGTTT.......................................................................................................1911068.001068000
....................................................................CAGCAGCACACTGTGGTTTGTA....................................................................................................221428.00428000
.....................................................................AGCAGCACACTGTGGTTTGT.....................................................................................................201199.00199000
.....................................................................AGCAGCACACTGTGGTTTG......................................................................................................19158.0058000
....................................................................CAGCAGCACACTGTGGTT........................................................................................................18157.0057000
..........................................................................................................TCCAAACCACACTGTGGTGTT...............................................................21155.0055000
....................................................................CAGCAGCACACTGTGGTTTGTAT...................................................................................................23150.0050000
............................................................................................................CAAACCACACTGTGGTGTTA..............................................................20150.0050000
....................................................................CAGCAGCACACTGTGGTTTGTAA...................................................................................................23137.0037000
...........................................................................................................CCAAACCACACTGTGGTGTTA..............................................................21135.0035000
.....................................................................AGCAGCACACTGTGGTTT.......................................................................................................18135.0035000
.....................................................................AGCAGCACACTGTGGTTTGTA....................................................................................................21131.0031000
...........................................................................................................CCAAACCACACTGTGGTGTT...............................................................20127.0027000
..........................................................................................................TCCAAACCACACTGTGGTGTTA..............................................................22121.0021000
..........................................................................................................TCCAAACCACACTGTGGTGT................................................................20116.0016000
............................................................................................................CAAACCACACTGTGGTGTTAGA............................................................22115.0015000
............................................................................................................CAAACCACACTGTGGTGTT...............................................................1918.008000
....................................................................CAGCAGCACACTGTGGTTTGC.....................................................................................................2117.007000
....................................................................CAGCAGCACACTGTGGTTTGTAAAA.................................................................................................2515.005000
............................................................................................................CAAACCACACTGTGGTGTTAG.............................................................2115.005000
....................................................................CAGCAGCACACTGTGGTTTGTAAA..................................................................................................2415.005000
....................................................................CAGCAGCACACTGTGGT.........................................................................................................1734.6714000
....................................................................CAGCAGCACACTGTGGTTTGTT....................................................................................................2214.004000
...........................................................................................................CCAAACCACACTGTGGTGTTAG.............................................................2214.004000
.........................................................................GCACACTGTGGTTTGT.....................................................................................................1643.7515000
.............................................................................................................AAACCACACTGTGGTGTTA..............................................................1913.003000
....................................................................CAGCAGCACACTGTGGTTTGTATT..................................................................................................2413.003000
....................................................................CAGCAGCACACTGTGGTTTGTAC...................................................................................................2313.003000
....................................................................CAGCAGCACACTGTGGTTTGTATA..................................................................................................2413.003000
...........................................................................................................CCAAACCACACTGTGGTGT................................................................1913.003000
............................................................................................................CAAACCACACTGTGGTGT................................................................1813.003000
.......................................................................CAGCACACTGTGGTTTGT.....................................................................................................1822.004000
......................................................................GCAGCACACTGTGGTTTGT.....................................................................................................1912.002000
..........................................................................................................TCCAAACCACACTGTGGTGTTAG.............................................................2312.002000
......................................................................GCAGCACACTGTGGTTT.......................................................................................................1712.002000
....................................................................CAGCAGCACACTGTGGTTTGTG....................................................................................................2212.002000
....................................................................CAGCAGCACACTGTGGTTTGG.....................................................................................................2112.002000
....................................................................CAGCAGCACACTGTGGTTTGTAG...................................................................................................2312.002000
....................................................................CAGCAGCACACTGTGGTTTGA.....................................................................................................2121.503000
............................................................................................................CAAACCACACTGTGGTGTTAGAA...........................................................2311.001000
.......................................................................CAGCACACTGTGGTTTGTA....................................................................................................1911.001000
............................................................................................................CAAACCACACTGTGGTGTTAGAAA..........................................................2411.001000
.....................................................................AGCAGCACACTGTGGTTTGTAA...................................................................................................2211.001000
....................................................................CAGCAGCACACTGTGGTTTGTTT...................................................................................................2311.001000
............................................................................................................CAAACCACACTGTGGTGTTAGC............................................................2211.001000
.............................................................................................................AAACCACACTGTGGTGTTAGA............................................................2111.001000
...............................................................................................................ACCACACTGTGGTGTTAG.............................................................1811.001000
....................................................................CAGCAGCACACTGTGGTTTGTC....................................................................................................2211.001000
...........................................................................................................CCAAACCACACTGTGGTGTTAGA............................................................2311.001000
....................................................................CAGCAGCACACTGTGGTTTGTAGT..................................................................................................2411.001000
.....................................................................AGCAGCACACTGTGGTT........................................................................................................1711.001000
...........................................................................................................CCAAACCACACTGTGGTGTTAGAAA..........................................................2511.001000
....................................................................CAGCAGCACACTGTGGTTA.......................................................................................................1950.603000
....................................................................CAGCAGCACACTGTGGTTTGTAAT..................................................................................................2420.501000
....................................................................CAGCAGCACACTGTGGTTTTG.....................................................................................................2160.503000
....................................................................CAGCAGCACACTGTGGTTTC......................................................................................................2020.501000
....................................................................CAGCAGCACACTGTGGTTTGTTGC..................................................................................................2420.501000
.....................................................................AGCAGCACACTGTGGTTTGC.....................................................................................................2020.501000
....................................................................CAGCAGCACACTGTGG..........................................................................................................1640.502000
....................................................................CAGCAGCACACTGTGGTTTGTATCC.................................................................................................2520.501000
....................................................................CAGCAGCACACTGTGGTTG.......................................................................................................1930.331000
........................................................................AGCACACTGTGGTTTG......................................................................................................1650.201000
.........................................................................GCACACTGTGGTTTG......................................................................................................15140.142000
..........................................................................CACACTGTGGTTTGT.....................................................................................................15140.142000
.......................................................................CAGCACACTGTGGTTTGTATC..................................................................................................2190.111000
.....................................................................AGCAGCACACTGTGGTTTAA.....................................................................................................20190.051000
speTri2
GGGGTCTTCATAGCACCATCTTGTGCTCTATTCCTCTCAACCCACCC------GTCCTGCCCCCGCCCCAGCAGCACACTGTGGTTTGTACGGCACTGTGGCCACGTCCAAACCACACTGTGGTGTTAGAGCGAGGGTGGGGGAGGCACCGCTGAGGCCTGGCCCTGGAAGGCCACCCTGGAGAAGCGACSizeHit CountTotal NormTotal
No Reads

Generated: 06/17/2015 at 01:03 PM