ID:

mmu-mir-496a

 Coordinate:

chr12:109739119-109739197 +

 Confidence:

Known

 Type:

Unknown

 [View on miRBase]
[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-37.5 -36.6 -36.6

Sense Strand Reads

GACTCCATCCTCAGATGCCTGAGATGTATCAACACAAGCTCTCGAAATCAAGTGTTCGAATGGAGGTTGCCCATGGTGTGTTCATTTTATTTATGATGAGTATTACATGGCCAATCTCCTTTCGGCACTAAAATCTTCCTGGGAGAGCTTCTTCGACTGTGCGGGTTAAGGAAATAAAT
************************************************..(((((.((((.((((((((.(((((..(((((((((........)))))))))..))))).)))))))).))))))))).....********************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR038744
brain		 SRR391847
embryo		 SRR391845
embryo		 SRR391846
embryo		 SRR391848
embryo		 SRR038741
brain		 SRR039610
brain		 SRR391852
embryo		 SRR391851
embryo		 SRR391853
embryo		 SRR345199
brain		 SRR391849
embryo		 SRR206940
brain		 SRR391850
embryo		 SRR206942
brain		 SRR039184
fibroblast		 SRR345198
brain		 SRR040488
liver		 SRR206939
brain		 GSM510444
brain		 SRR039185
fibroblast		 SRR206941
brain		 SRR1509750
spermatogonia		 SRR039183
fibroblast		 SRR390297
fibroblast		 SRR553582
brain		 SRR553602
sertoli_cells		 SRR345197
brain		 SRR345206
brain		 SRR037921
embryo		 SRR345202
brain		 SRR345201
brain		 SRR039186
fibroblast		 SRR037920
embryo		 SRR345200
brain		 SRR042475
fibroblast		 SRR345203
brain		 SRR345207
brain		 SRR042471
spleen		 SRR042477
brain		 SRR345196
brain		 SRR1509751
foetal_primordial_germ_cells		 SRR037906
brain		 SRR037905
brain		 SRR345205
brain		 SRR248526
Thy1-_somatic_testes_cells		 SRR345204
brain		 SRR037922
embryo		 SRR248525
Thy1-_somatic_testes_cells		 SRR363964
testes		 SRR553583
cerebellum		 GSM475281
testes		 SRR248524
Thy1+_spermatogonia		 SRR037925
embryo		 SRR037919
embryo		 SRR037907
brain		 SRR037924
embryo		 SRR077866
liver		 SRR060845
brain		 SRR1509749
zygote		 SRR042462
bone marrow		 SRR065059
pancreas		 SRR042483
muscle		 SRR1509747
oocyte		 SRR037904
brain		 SRR065058
pancreas		 SRR069809
Type_A_spermatogonia		 GSM317181
brain		 SRR116846
epididymis		 SRR1509748
spermatozoa		 SRR248523
Thy1+_spermatogonia		 SRR032476
uterus		 SRR037929
embryo		 SRR095855BC1
heart		 SRR553584
heart		 SRR032477
uterus		 SRR042463
spleen		 GSM509275
testes		 SRR042484
salivary gland		 SRR073955
blood		 SRR014234
ovary		 SRR037926
embryo		 SRR037928
embryo		 GSM509279
testes		 GSM566419
fibroblast		 SRR042486
ovary		 SRR051940
testes		 SRR095855BC5
heart		 SRR248527
spermatogonia		 SRR065050
liver		 SRR069810
pachytene_spermatocytes		 SRR073954
blood		 SRR553586
testes		 SRR037923
embryo		 SRR042481
pancreas		 SRR065046
liver		 SRR095855BC7
heart		 SRR065049
liver		 SRR1647950
Dicer_cKO_leptotene_zygotene_spermatocytes		 SRR553604
spermatocytes		 SRR037902
testes		 GSM317182
brain		 SRR037901
testes		 SRR037927
embryo		 SRR039154
muscle		 SRR042478
lung		 SRR042485
testes		 SRR065047
liver		 SRR077865
liver		 SRR095853
heart		 SRR095855BC4
heart		 SRR1647949
Dicer_WT_leptotene_zygotene_spermatocytes		 SRR1647953
Dicer_WT_pachytene_spermatocytes		 SRR1647954
Dicer_cKO_pachytene_spermatocytes		 GSM566420
fibroblast		 SRR014236
testes		 SRR037897
ovary		 SRR037903
testes		 SRR037930
embryo		 SRR065045
liver		 SRR065048
liver		 SRR065053
jejunum		 SRR065056
jejunum		 SRR069811
round_spermatid		 SRR077864
liver		 SRR095855BC2
heart		 SRR095855BC3
heart		 SRR1647947
Dgcr8_WT_leptotene_zygotene_spermatocytes		 SRR1647948
Dgcr8_cKO_leptotene_zygotene_spermatocytes		 SRR553603
spermatids
..................................................................................................AGTATTACATGGCCAATCTCC............................................................ 21 0 1 21845.00 21845 2974 1261 1162 963 1692 1269 1268 1500 1295 1136 1082 609 773 467 470 75 210 23 315 285 59 282 0 45 148 259 133 97 164 121 160 113 25 108 114 131 119 110 20 61 3 0 90 78 66 58 52 39 38 0 53 17 22 12 15 21 8 11 5 0 12 6 6 0 14 9 14 18 10 0 6 3 5 7 9 0 0 1 1 1 0 1 0 1 1 4 2 4 3 1 1 1 2 1 0 0 0 1 2 0 0 0 0 2 0 0 0 0 2 0 1 2 1 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0
................................................................................................TGAGTATTACATGGCCAATCTC............................................................. 22 0 1 7940.00 7940 899 1202 1143 1060 517 416 281 191 136 155 0 175 68 185 58 154 0 173 37 50 128 46 0 119 120 14 79 1 16 95 10 1 79 72 0 29 7 7 24 32 0 0 11 18 7 9 9 24 9 0 0 3 5 4 16 3 7 1 5 0 4 0 4 0 2 1 2 0 1 0 1 0 0 0 0 0 3 1 0 0 2 1 2 1 0 0 1 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TGAGTATTACATGGCCAATCT.............................................................. 21 0 1 4225.00 4225 448 772 714 433 53 201 145 22 13 15 21 14 39 18 61 102 67 129 31 17 76 45 0 99 13 10 31 46 42 8 56 58 42 2 2 14 42 27 113 44 0 0 11 8 13 6 25 2 3 0 0 4 4 1 1 1 0 3 10 0 1 2 9 0 1 0 0 0 0 0 2 5 0 1 0 9 5 1 4 0 2 0 0 1 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................AGTATTACATGGCCAATCTC............................................................. 20 0 1 1962.00 1962 402 145 145 96 74 137 137 32 21 22 21 31 62 24 43 27 57 17 22 32 15 28 0 17 21 13 19 10 27 9 23 7 10 6 30 10 3 15 7 1 17 0 9 5 7 7 3 0 6 0 2 12 0 5 1 2 7 6 1 0 3 14 1 0 2 4 0 3 2 0 1 1 2 1 1 0 0 1 0 0 1 0 2 1 1 0 2 0 0 0 1 1 2 0 1 0 2 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TGAGTATTACATGGCCAATCTCT............................................................ 23 1 1 1321.00 1321 148 151 128 117 149 87 68 12 2 10 0 64 6 55 8 39 0 57 3 15 32 3 0 29 7 2 17 0 1 13 0 0 12 11 0 8 1 1 2 17 0 0 3 4 2 5 5 5 3 0 0 1 0 0 2 1 0 1 4 0 2 0 0 0 0 0 1 0 2 0 1 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TGAGTATTACATGGCCAATCTCC............................................................ 23 0 1 1054.00 1054 112 124 136 103 122 49 46 33 22 30 0 42 24 40 33 12 0 11 18 9 7 16 0 5 0 2 4 0 0 3 0 0 6 6 0 4 2 2 1 4 0 0 0 4 1 1 0 1 5 0 2 1 2 0 1 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................AGTATTACATGGCCAATCT.............................................................. 19 0 1 858.00 858 98 26 23 17 4 60 58 3 0 0 11 2 17 0 28 10 37 15 16 21 3 15 0 12 0 4 4 84 23 1 11 25 6 1 20 1 0 3 1 0 126 0 6 8 5 0 4 0 1 0 0 6 0 5 0 2 4 2 0 0 1 3 1 0 0 4 2 0 1 0 1 1 1 1 0 0 0 0 1 0 0 2 2 0 1 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0
..................................................................................................AGTATTACATGGCCAATCTCCA........................................................... 22 1 1 638.00 638 31 15 14 15 31 16 20 118 99 121 0 15 12 6 9 4 0 0 2 23 2 2 0 1 0 0 1 0 8 11 0 0 1 8 0 10 4 3 0 4 0 0 6 3 0 2 3 1 4 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 2 1 1 0 0 0 0 0 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................AGTATTACATGGCCAATCTCT............................................................ 21 1 1 613.00 613 61 81 58 48 44 22 17 20 10 6 9 15 6 18 3 5 15 5 1 4 4 5 0 7 13 0 5 5 6 0 11 6 1 4 0 17 4 8 8 4 0 0 0 1 7 1 4 1 0 0 1 5 0 4 0 0 1 6 4 0 4 0 1 0 0 1 3 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0
................................................................................................TGAGTATTACATGGCCAATCTCA............................................................ 23 1 1 573.00 573 38 38 20 45 144 22 22 6 8 14 0 44 3 40 11 11 0 28 5 3 13 1 0 8 5 1 2 0 0 5 0 0 6 10 0 1 0 0 0 3 0 0 1 1 0 3 0 1 2 0 0 0 6 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TGAGTATTACATGGCCAATC............................................................... 20 0 1 551.00 551 24 128 110 114 19 11 11 3 1 1 3 8 5 6 3 20 1 14 1 0 17 5 0 9 0 0 4 0 0 2 1 2 7 0 0 0 2 1 2 0 0 0 1 0 1 3 0 0 2 0 0 2 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................AAATCAAGTGTTCGAATGGA................................................................................................................... 20 0 1 443.00 443 1 52 46 40 18 2 1 57 32 37 0 7 1 5 0 27 0 2 2 2 22 0 0 21 21 2 4 0 0 1 0 0 14 7 0 0 0 0 1 0 0 0 1 1 2 2 0 2 0 0 0 0 1 3 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................AGTATTACATGGCCAATCTCCATC......................................................... 24 2 1 442.00 442 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 303 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 91 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19 0 0 0 20 0 0 0 0 0 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................GAAATCAAGTGTTCGAATGGA................................................................................................................... 21 0 1 350.00 350 0 55 56 33 10 1 0 41 22 34 0 5 5 2 0 15 0 2 0 0 14 0 0 6 9 3 1 0 0 2 0 0 10 3 0 0 0 0 0 0 0 0 0 2 0 5 0 1 2 0 0 1 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................AGTATTACATGGCCAATCTCCT........................................................... 22 0 1 244.00 244 14 7 17 13 35 9 19 24 9 11 0 8 2 5 1 3 0 0 3 4 1 4 0 0 26 2 0 0 4 1 1 0 1 1 0 4 2 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 1 0 0 0 2 0 0 1 2 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................AGTATTACATGGCCAATC............................................................... 18 0 1 238.00 238 7 60 49 33 6 9 4 2 0 1 1 1 1 4 0 21 2 2 0 0 14 2 0 4 0 0 0 0 1 1 0 0 3 0 0 0 1 0 0 0 2 0 0 1 0 1 0 0 0 0 0 0 1 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................AGTATTACATGGCCAATCTCA............................................................ 21 1 1 172.00 172 20 10 9 10 10 4 4 6 2 3 5 7 6 7 0 4 12 3 0 4 4 1 0 3 0 0 0 0 8 0 2 0 1 0 1 6 0 5 2 2 0 0 3 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................ATCAAGTGTTCGAATGGA................................................................................................................... 18 0 1 157.00 157 1 15 8 15 8 0 0 19 6 4 1 2 0 1 0 7 2 3 0 1 10 1 0 3 2 3 0 14 0 5 0 3 13 1 0 0 1 0 1 0 0 0 0 0 0 2 0 1 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TGAGTATTACATGGCCAATCTCG............................................................ 23 1 1 135.00 135 3 3 4 5 41 0 0 4 2 4 0 29 2 15 0 5 0 6 0 0 3 0 0 4 0 0 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................AATCAAGTGTTCGAATGGA................................................................................................................... 19 0 1 113.00 113 2 15 20 12 1 0 0 6 11 13 0 0 0 0 0 8 4 0 0 0 4 0 0 1 0 3 2 0 0 0 0 0 7 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................AGGTTGCCCATGGTGTGTTCA............................................................................................... 21 0 1 101.00 101 5 7 2 7 13 2 3 9 8 5 0 9 3 7 0 2 0 0 0 0 2 1 0 1 0 0 0 0 0 0 0 0 1 1 0 5 0 0 1 0 0 0 0 0 2 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................AAATCAAGTGTTCGAATGG.................................................................................................................... 19 0 1 95.00 95 2 8 12 7 1 0 1 8 1 1 0 0 0 1 0 7 1 0 0 0 6 0 0 7 0 8 7 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
................................................................................................TGAGTATTACATGGCCAA................................................................. 18 0 1 93.00 93 0 22 31 19 0 0 0 0 0 0 0 1 0 0 0 5 0 0 0 0 9 0 0 3 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................AGGATTACATGGCCAATCTCC............................................................ 21 1 1 90.00 90 2 1 2 5 0 0 0 0 1 1 48 0 0 0 0 0 9 0 0 2 0 0 0 0 0 0 0 2 0 2 1 2 0 1 8 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TGAGTATTACATGGCCAATCTA............................................................. 22 1 1 88.00 88 16 3 3 6 2 3 4 0 3 2 0 0 3 0 1 4 0 11 6 1 5 3 0 6 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................AGTATTACATGGCCAATCCCC............................................................ 21 1 1 81.00 81 7 0 1 1 0 1 0 2 0 1 42 0 1 0 0 0 11 0 1 0 0 0 0 0 0 0 0 4 0 0 0 3 0 2 2 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................GTATTACATGGCCAATCTCC............................................................ 20 0 1 80.00 80 16 0 0 3 7 11 7 3 1 2 0 13 0 7 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................CTTTCGGCACTAAAATCTTCCTGGGAGAGCTTCTTCGACTGTGCGGGTTAAG......... 52 0 1 77.00 77 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 77 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TGAGTATTACATGGCCAAT................................................................ 19 0 1 76.00 76 3 6 1 2 1 1 4 0 0 0 0 0 0 0 0 22 0 3 0 0 12 0 0 10 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 1 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................GAGTATTACATGGCCAATCTCC............................................................ 22 0 1 70.00 70 8 5 8 7 3 3 3 0 2 2 0 1 0 1 0 0 0 0 1 3 0 0 0 0 0 0 0 3 1 4 0 3 0 0 0 1 0 2 0 3 0 0 1 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................AGTATTACATGGCCACTCTCC............................................................ 21 1 1 70.00 70 1 4 5 2 0 1 1 7 1 0 5 0 8 0 5 0 3 0 0 6 0 3 0 0 1 1 0 0 3 0 0 0 0 0 2 1 1 6 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................AGTATTACATGGCCAATCTCCATA......................................................... 24 2 1 69.00 69 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................GAAATCAAGTGTTCGAATGG.................................................................................................................... 20 0 1 68.00 68 0 8 6 6 0 1 0 4 3 1 0 0 2 0 0 3 0 0 0 0 4 0 0 3 0 3 12 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 3 0 1 0 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................AGCATTACATGGCCAATCTCC............................................................ 21 1 1 67.00 67 4 1 1 2 1 2 3 2 1 3 25 0 1 0 1 0 3 0 0 0 0 1 0 0 0 0 0 1 0 1 1 2 0 1 3 0 2 1 0 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TCAAGTGTTCGAATGGA................................................................................................................... 17 0 1 67.00 67 5 4 0 2 4 3 1 2 5 2 0 0 2 0 0 0 2 0 1 0 0 0 0 0 0 12 4 9 0 0 0 1 0 0 2 0 0 1 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................AATCAAGTGTTCGAATGG.................................................................................................................... 18 0 1 65.00 65 4 10 5 3 0 0 2 2 1 0 0 0 2 1 0 6 0 0 1 0 3 0 0 3 2 3 3 0 0 1 0 0 4 0 0 0 0 0 0 0 5 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TGAGTATTACATGGCCAATCTCATC.......................................................... 25 2 1 63.00 63 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................GAGTATTACATGGCCAATCTC............................................................. 21 0 1 63.00 63 10 3 6 3 3 8 5 0 0 1 0 3 0 2 0 1 0 0 1 1 0 0 0 0 0 0 3 0 0 0 3 0 0 1 0 0 0 0 2 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................GAGTATTACATGGCCAATCT.............................................................. 20 0 1 57.00 57 4 2 0 0 0 3 6 0 0 0 3 0 0 0 0 0 3 0 1 3 0 0 0 0 0 1 0 8 1 0 0 2 0 0 0 0 0 0 6 0 2 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 4 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TGAGTATTACATGGCCAATCTT............................................................. 22 1 1 51.00 51 4 10 9 2 3 6 3 0 0 2 0 0 0 1 0 1 0 2 0 0 0 1 0 0 0 1 1 0 0 0 1 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................AGAATTACATGGCCAATCTCC............................................................ 21 1 1 51.00 51 4 0 0 3 0 1 1 1 0 2 19 0 0 0 0 0 6 0 1 1 0 0 0 0 0 0 0 0 1 1 2 3 0 0 2 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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..................................................................................................AGTAATACATGGCCAATCTCC............................................................ 21 1 2 3.50 7 0 0 1 0 0 0 0 0 0 0 3 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................AGAATTACATGGCCAATCTC............................................................. 20 1 2 3.50 7 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................ATTACATGGCCAATCTCT............................................................ 18 1 5 3.20 16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 3 0 0 0 0 0 0 0 0 0 6 0 0 0 3 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TGAGTATTACATCGCCAATCT.............................................................. 21 1 1 3.00 3 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TGAGTATTACATGGCCAATCTCTATC......................................................... 26 3 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TGAGTATTACATGTCCAATCTC............................................................. 22 1 1 3.00 3 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................AGTATTACATGGCCAATCGC............................................................. 20 1 1 3.00 3 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TGAGTAATACATGGCCAATCTC............................................................. 22 1 1 3.00 3 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................AGTATTACATGGCCAATATC............................................................. 20 1 1 3.00 3 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TGAGTGTTACATGGCCAATCTC............................................................. 22 1 1 3.00 3 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TGAGTATTACATGGCCAATCATC............................................................ 23 2 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TGAGTATTTCATGGCCAATCTC............................................................. 22 1 1 3.00 3 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CTGAGGTAGGAGTCTACGGACTCTACATAGTTGTGTTCGAGAGCTTTAGTTCACAAGCTTACCTCCAACGGGTACCACACAAGTAAAATAAATACTACTCATAATGTACCGGTTAGAGGAAAGCCGTGATTTTAGAAGGACCCTCTCGAAGAAGCTGACACGCCCAATTCCTTTATTTA
*********************************************..(((((.((((.((((((((.(((((..(((((((((........)))))))))..))))).)))))))).))))))))).....************************************************ 		Read size # Mismatch Hit Count Total Norm Total GSM361430
brain		 GSM361408
brain		 GSM361407
brain		 GSM361415
brain		 SRR345200
brain		 GSM361394
brain		 GSM361395
brain		 GSM361398
brain		 GSM361399
brain		 GSM361402
brain		 SRR073954
blood		 SRR345197
brain		 SRR065055
jejunum		 SRR1509749
zygote		 SRR391847
embryo		 SRR039154
muscle		 SRR345199
brain		 SRR345201
brain		 SRR345198
brain		 SRR069811
round_spermatid		 SRR065056
jejunum		 SRR391848
embryo		 SRR073955
blood		 SRR345196
brain		 SRR039152
muscle		 SRR069810
pachytene_spermatocytes
..................................................................................................TCATAATGTACCGGTTAGAGG............................................................ 21 0 1 33.00 33 14 10 2 2 0 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................ACTCATAATGTACCGGTTAGAG............................................................. 22 0 1 7.00 7 0 1 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................TCATAATGTACCGGTTAGAGA............................................................ 21 1 1 6.00 6 1 1 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................ACTCATAATGTACCGGTTAGC.............................................................. 21 1 1 6.00 6 0 0 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................CCTCATAATGTACCGGTTAGC.............................................................. 21 2 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................TCATAATGTACCGGTTAGAG............................................................. 20 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................CCTCATAATGTACCGGTTAGAGG............................................................ 23 1 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................ACTCATAATGTACCGGTTAGA.............................................................. 21 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................TCCTAATGTACCGGTTAGAGG............................................................ 21 1 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TCCAACGGGTACCACACAAGTAA............................................................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................ACTCAAGATGTACCGGTTAGAGG............................................................ 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................CCAACGGGTACCACACAAGTAA............................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................TCATAATTTACCGGTTAGA.............................................................. 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................TCATAATGTACCGGTTAGAGT............................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TCCAACGGGTACCACACAAG................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................ACTCATAATGTACCGGTTAGAGG............................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................TCATAATTTACCGGTTAGAG............................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................TCATAATGTACCGGTTAGAGGC........................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................ACTCATAATGTACCGGTTAG............................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................ACTCAAAATGTACCGGTTAGAG............................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................TCATAATGTACCGGTTAGAGGAA.......................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................TCATAATGTACCGGTTAGAGGT........................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................CGAAGAAGCATACACGCCCAA............ 21 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................CCTAATAATGTACCGGTTAGAG............................................................. 22 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................ACCGGTTAGGGGAAAGCCC..................................................... 19 2 7 0.43 3 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 0 0
..GAGGTAGGAGTCTGCGGAC.............................................................................................................................................................. 19 1 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................TCTACATAGTAGTGTTCGA........................................................................................................................................... 19 1 4 0.25 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................CTCTACAGAGTTGTGTTCG............................................................................................................................................ 19 1 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................CTACAAAGTCGTGGTCGAGAGCT...................................................................................................................................... 23 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................TCTACATAGTAGTGTTCG............................................................................................................................................ 18 1 5 0.20 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................CCCGGTTAGAGGCAGGCCG..................................................... 19 3 20 0.20 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 1
..........................................................................................................TACAGGTTAGAGGAAAGGCG..................................................... 20 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................CGAACAAGCCGATACGCCCAA............ 21 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................TTCGCGAAGAAGCTGACAC.................. 19 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................GTGATGTTAGAAGGATCCT................................... 19 2 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 2 0
..............................................................................................................................TGATGTTAGAAGGACCCT................................... 18 1 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................CTACATAGTAGTGTTCGA........................................................................................................................................... 18 1 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..GTGGTAGGAGTCTACGGA............................................................................................................................................................... 18 1 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................CTCCAATGGGGCCCACACAAG................................................................................................ 21 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................AAGCTTGGCTCCAACGGG........................................................................................................... 18 2 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................TGCGTGCGAGAGCTTTA................................................................................................................................... 17 2 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................GTAGAAGCTGACACGCCA.............. 18 2 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................CGCCAACGGGGTCCACACAAG................................................................................................ 21 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................CCAACGGGGCCCACACAAG................................................................................................ 19 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................GGAAAGCCGTGATAGTAGC........................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................CCGGTTAGGGGAAAGCCC..................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................CCGCTCTAAGAAGCTGCCA................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
mm10 chr12:109739069-109739247 + mmu-mir-496a GACTCCATCCTCAGA-----TGCCTGAGAT---GTATCAACA-CAAGCTCTCGAAATCAAGTGTTCGAATGGAGGTTGCCCATGGTGTGTTCATTTTATTTATGATGAGTATTACATGGCCAATCTCCTTTCGGCACTAAAATCTTCCTGGGAGAGCTTCT-------------------TCGACTGTGCGGGTTAAGGA-AATAAAT
cavPor3 scaffold_111:1112973-1113154 + ATC-CCATCCTTAGGCCTGGCATCTGGGAC---TCGGCAATA-CAAGCACACT-AGTCGGGTACTTGAATGGAGGTTGTCCATGGTGTGTTCATTTTATTTATGATGAGTATTACATGGCCAATCTCTTTTCGGTACTAAAATCTTCTCGGGAAAACTTCA-------------------GCGCCTGCACGGGGTAAGGA-AACGGGT
dipOrd1 scaffold_11516:31982-32163 + GTCTCC---------CCTGCTGCCTGGGAGACCCCCGCGGTGACCGCCACCCT-AGCCAGGTGCTCGAATGGAGGTTGTCCATGGTGTGTTCATTTTATTTATGATGAGTATTACATGGCCAATCTCCTTTCGGTACTAAAGTCTTCTTGGGAAGCCGTCACAG---GGAGCT------------CGCGCCGG-TAAGAAGAATGAAG
hetGal2 Unknown ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ochPri2 scaffold_7053:48330-48435 + ------------------------------------------------------AGTCGGGTACTCGAATGGAGGTTGTCCATGGTGTGTTCATTTTATTTATGATGAGTATTACATGGCCAATCTCCTTTCGGTACTAAATTCTTCTTGGGGAGGCTCC------------------------------------------------
oryCun2 Unknown GTCTCTGTCCTCAGGGCTGCTGTCGGGGAC---GCACCAGGAGGGAGCACCCT-AGTCAGGTACTTGAATGGAGGTTGTCCATGGTGTGTTCATTTTATTTATGATGAGTATTACATGGCCAATCTCCTTTCGGTACTAAGTTCTTCTTGGGGAGGCTCCACAAGTGG-ACGTCCAGCCGGCTGCCGTGCGGGGTAAGAA-GCCGACC
rn5 chr6:143051585-143051768 + rno-mir-496 GACTCCATCTTCAGGTCTGTGGCCTGAGAC---GTAGCAATG-CAAGCTCTCGAAATCAAGTGTTCGAATGGAGGTTGTCCATGGTGTGTTCATTTTATTTATGATGAGTATTACATGGCCAATCTCCTTTCGGCACTAAAATCTTCCTGGGAGAGCTTCT-------------------CCGACTGTGCAGGTTAGGGG-AACAAAT
speTri2 Unknown ATCTCTGTCCTTAGGCCTGCCACCAGGGAC---ACACTGCAG-CCAGCACCCG-AGTCCGGTACTCGAATGGAGGTTGTCCATGGTGTGTTCATTATATTTATGATGAGTATTACATGGCCAATCTCCTTTCGGTACTAAATTCTTCTTGGGAAAACTTCGCCAGGGGAAGCTCCAGCCAGTGCCTGTGCAGGGTAAGGA-AATGGGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
mm10
GACTCCATCCTCAGA-----TGCCTGAGAT---GTATCAACA-CAAGCTCTCGAAATCAAGTGTTCGAATGGAGGTTGCCCATGGTGTGTTCATTTTATTTATGATGAGTATTACATGGCCAATCTCCTTTCGGCACTAAAATCTTCCTGGGAGAGCTTCT-------------------TCGACTGTGCGGGTTAAGGA-AATAAATSizeHit CountTotal NormTotalSRR042455
blood		SRR042459
blood		SRR042460
blood		SRR069834
blood		SRR073954
blood		SRR073955
blood		SRR525238
Blood		SRR525237
Blood		SRR042456
bone marrow		SRR042457
bone marrow		SRR042461
bone marrow		SRR042462
bone marrow		GSM317181
brain		GSM317182
brain		GSM361394
brain		GSM361395
brain		GSM361398
brain		GSM361399
brain		GSM361402
brain		GSM361407
brain		GSM361408
brain		GSM361415
brain		GSM361430
brain		GSM510444
brain		SRR037904
brain		SRR037905
brain		SRR037906
brain		SRR037907
brain		SRR038741
brain		SRR038744
brain		SRR039610
brain		SRR042477
brain		SRR060845
brain		SRR206939
brain		SRR206940
brain		SRR206941
brain		SRR206942
brain		SRR345196
brain		SRR345197
brain		SRR345198
brain		SRR345199
brain		SRR345200
brain		SRR345201
brain		SRR345202
brain		SRR345203
brain		SRR345204
brain		SRR345205
brain		SRR345206
brain		SRR345207
brain		SRR037919
embryo		SRR037920
embryo		SRR037921
embryo		SRR037922
embryo		SRR037923
embryo		SRR037924
embryo		SRR037925
embryo		SRR037926
embryo		SRR037927
embryo		SRR037928
embryo		SRR037929
embryo		SRR037930
embryo		SRR391845
embryo		SRR391846
embryo		SRR391847
embryo		SRR391848
embryo		SRR391849
embryo		SRR391850
embryo		SRR391851
embryo		SRR391852
embryo		SRR391853
embryo		SRR116846
epididymis		GSM566419
fibroblast		GSM566420
fibroblast		SRR039183
fibroblast		SRR039184
fibroblast		SRR039185
fibroblast		SRR039186
fibroblast		SRR042475
fibroblast		SRR390297
fibroblast		SRR390298
fibroblast		SRR042484
salivary gland		SRR042476
heart		SRR095853
heart		SRR095855BC1
heart		SRR095855BC10
heart		SRR095855BC2
heart		SRR095855BC3
heart		SRR095855BC4
heart		SRR095855BC5
heart		SRR095855BC6
heart		SRR095855BC7
heart		SRR095855BC8
heart		SRR095855BC9
heart		SRR065052
jejunum		SRR065053
jejunum		SRR065054
jejunum		SRR065055
jejunum		SRR065056
jejunum		SRR042480
kidney		SRR040488
liver		SRR042479
liver		SRR065045
liver		SRR065046
liver		SRR065047
liver		SRR065048
liver		SRR065049
liver		SRR065050
liver		SRR077864
liver		SRR077865
liver		SRR077866
liver		SRR042478
lung		SRR042468
lymph		SRR042469
lymph		SRR042470
lymph		SRR042472
lymph		SRR042473
lymph		SRR039152
muscle		SRR039153
muscle		SRR039154
muscle		SRR042483
muscle		SRR014234
ovary		SRR037896
ovary		SRR037897
ovary		SRR037898
ovary		SRR037899
ovary		SRR042486
ovary		SRR042481
pancreas		SRR065058
pancreas		SRR065059
pancreas		SRR042482
skin		SRR042463
spleen		SRR042465
spleen		SRR042466
spleen		SRR042467
spleen		SRR042471
spleen		SRR042487
spleen		SRR059768
spleen		SRR059769
spleen		SRR059770
spleen		SRR059771
spleen		SRR059772
spleen		SRR059773
spleen		GSM475281
testes		GSM509275
testes		GSM509279
testes		SRR014231
testes		SRR014235
testes		SRR014236
testes		SRR028731
testes		SRR037900
testes		SRR037901
testes		SRR037902
testes		SRR037903
testes		SRR042485
testes		SRR051939
testes		SRR051940
testes		SRR069809
Type_A_spermatogonia		SRR069810
pachytene_spermatocytes		SRR069811
round_spermatid		SRR248523
Thy1+_spermatogonia		SRR248524
Thy1+_spermatogonia		SRR248525
Thy1-_somatic_testes_cells		SRR248526
Thy1-_somatic_testes_cells		SRR248527
spermatogonia		SRR363956
testes		SRR363957
testes		SRR363958
testes		SRR363959
testes		SRR363960
testes		SRR363963
testes		SRR363964
testes		SRR553582
brain		SRR553583
cerebellum		SRR553584
heart		SRR553585
kidney		SRR553602
sertoli_cells		SRR553603
spermatids		SRR553604
spermatocytes		SRR553586
testes		SRR042464
thymus		SRR059765
thymus		SRR059766
thymus		SRR059767
thymus		SRR032476
uterus		SRR032477
uterus		SRR1509747
oocyte		SRR1509748
spermatozoa		SRR1509749
zygote		SRR1509750
spermatogonia		SRR1509751
foetal_primordial_germ_cells		SRR1647947
Dgcr8_WT_leptotene_zygotene_spermatocytes		SRR1647948
Dgcr8_cKO_leptotene_zygotene_spermatocytes		SRR1647949
Dicer_WT_leptotene_zygotene_spermatocytes		SRR1647950
Dicer_cKO_leptotene_zygotene_spermatocytes		SRR1647951
Dgcr8_WT_pachytene_spermatocytes		SRR1647952
Dgcr8_cKO_pachytene_spermatocytes		SRR1647953
Dicer_WT_pachytene_spermatocytes		SRR1647954
Dicer_cKO_pachytene_spermatocytes
...........................................................................................................AGTATTACATGGCCAATCTCC................................................................................21121845.0021845000011000001218000000000028514789021126929741268615315773282470397210108211411316011952661641101510812139181212050116296312611692609467129515001136101145755925131148010070001400000000002301000110211000000000600000409600000200000000171100000000002141062238583000000025953901330020000300000001220011
.........................................................................................................TGAGTATTACATGGCCAATCTC.................................................................................2217940.00794000000000000400000000000502181134168992813253768465801000110797167167295241741020011431060120251717518513619115510011915412879291200000000010000000000017300100000010000000004200000010030002400000003110000000000121015990000000014000790000000000000000000000
.........................................................................................................TGAGTATTACATGGCCAATCT..................................................................................2114225.0042250000100000010000000000017181112014481454410313945610466721258564225134227128200100001714433772531418132215000991027642141304001000000000000000129001000000300000000292000000020500011300000004110000000000000024360000000010000310000000590000000000000
...........................................................................................................AGTATTACATGGCCAATCTC.................................................................................2011962.00196200001000000330000000000322592137402137112262284317105721307233372715169007500220145961457431242132222101727151010210000100000020000000017000000000610000000011000001414000007000000012110000010000201010670000000013210190020000100000000010010
.........................................................................................................TGAGTATTACATGGCCAATCTCT................................................................................2311321.00132100000000000200000000000150431871486817436380000000152112111350000000012811715114964552121020029393212870000000000000000000057000000100100000000000000000000100020000000100000000000001001035000000002000170000000200000000000000
.........................................................................................................TGAGTATTACATGGCCAATCTCC................................................................................2311054.00105400000000000000000000000914024911246401824163300000002010216310001000013610312412242402233300005127640000000000000000000001100000000000000000000000000000000001000000011100100000000000125100000000220040000000000000000000000
...........................................................................................................AGTATTACATGGCCAATCT..................................................................................191858.0085800000000000100000000000210862609858001617152812684371120251104523301101452021023172642003011012103610010010100000000000001500000000020000000001000000143000001000000060000000100000211101000000000400040000000100000010000000
...........................................................................................................AGTATTACATGGCCAATCTCCA...............................................................................221638.0063800000100000000000000000232361163120402122900000004308318111010000201415153115699118121000142110000000000010000000000000000000010000000000000000010000000000000000000000000000110004200000000000010000000000000000000000
...........................................................................................................AGTATTACATGGCCAATCTCT................................................................................211613.00613000000000004000000000004010022611744165305159061144768040101400000584881441518102060107541171300000000000000010010500121111060000000001000000010000008000000050000000010100300100100000000010050000000000000000000000
.........................................................................................................TGAGTATTACATGGCCAATCTCA................................................................................231573.005730000000000000000000000031110223822315311100000000000001051000000002045381444440861400081113615000000000000000000002800000000000000000000000000000000000000000000000000000000000062300000000100020000000000000000000000
.........................................................................................................TGAGTATTACATGGCCAATC...................................................................................201551.005510000000000000000000000000010112411001553001302120101002000000000110114128198613100092017700010000000000000000001400000000000000000001000000101000002000000021000000000000000002300000000000040000000110000000000000
.....................................................AAATCAAGTGTTCGAATGGA.......................................................................................................................................201443.00443000000000000000000000002011021100210000000000020007120130000046405218753257370002127221402100000000000000000000200000000010000000000200000000000001000000000000000000000000010210000000201040000000000000000000000
....................................................GAAATCAAGTGTTCGAATGGA.......................................................................................................................................211350.003500000010000000000000000000200100000500000000000000032100000110563355105222413400061514100900000001000000000000200000000010000000000000000000000000000000010000000000000000122510000000300010100000000000000000000
...........................................................................................................AGTATTACATGGCCAATCTCCT...............................................................................221244.0024400000000000000000000000410009141900324100000012004001100000000017137358592411000031142600002000000000000000000100000010000000000000000022000000000000011000000000000000001100000000200000000000000000000000000
...........................................................................................................AGTATTACATGGCCAATC...................................................................................181238.0023800000100000000000000000001009740001202021000100100010012000004933606140210004211430000000000000000000000200000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000
...........................................................................................................AGTATTACATGGCCAATCTCA................................................................................211172.0017200000000000100000000000400304204200610001251020008500000000000091010107726310034416000000000000000000000300000000000000000001001000000000002000000000000000000100000001200000000000000000000000000000000000
.......................................................ATCAAGTGTTCGAATGGA.......................................................................................................................................181157.00157000000000000000000000001000001000001001421030100001151011000008151582161940003710130200000000000000000000300000000000000000000000000000000001000000000000000000000000100200000000300000000000000000000000000
.........................................................................................................TGAGTATTACATGGCCAATCTCG................................................................................231135.00135000000000000000000000000010003000020000000000000000110000000045341291524400045320000000000000000000000600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................AATCAAGTGTTCGAATGGA.......................................................................................................................................191113.0011300000100000000000000000000000200000000040000000000101000000002012151001161300018470000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000300020000000000000000000000
........................................................................AGGTTGCCCATGGTGTGTTCA...................................................................................................................211101.001010000000000000000000000000000253000310000000000200010100000000277139789500012215000000000010000000000000000000000000000000000001000000001000000000000000000000000002000000000000000000000000000000000000
.....................................................AAATCAAGTGTTCGAATGG........................................................................................................................................19195.00950000000000000000000000000000021000000001000000000000000000010127810118100077650000000000000000000000000000000000000000000000000000000000000000000000000000000000221400000000800071100000000000000000000
.........................................................................................................TGAGTATTACATGGCCAA.....................................................................................18193.0093000000000000000000000000000000000000000000210000000000000000031192201000000035900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................TGAGTATTACATGGCCAATCTA.................................................................................22188.008800000000000000000000000100003164106331000000000000000000000000363200302100645200000000000000000000001100000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000
............................................................................................................GTATTACATGGCCAATCTCC................................................................................20180.0080000000000000010000000001002011167001000000000000000010000000000030713713201000000000000000000000000000000000000000000000000000000000000002000000001000000000000000000000000000000000000000000000000000000
...............................................................................................................................CTTTCGGCACTAAAATCTTCCTGGGAGAGCTTCT-------------------TCGACTGTGCGGGTTAAG..........52177.00770000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000077000000000000000000000000000
.........................................................................................................TGAGTATTACATGGCCAAT....................................................................................19176.0076000000000000000000000000000013400000000000000310000000000000012610000000010221250000000000000000000000300000000000000000000000000000000000000000000000000000000000000100000000000000000000010000000000000
..........................................................................................................GAGTATTACATGGCCAATCTCC................................................................................22170.0070000000000000000000000003101038330100003000300301200410000000087531120200000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................GAAATCAAGTGTTCGAATGG........................................................................................................................................20168.00680000100000000000000000000000100000200000000000000110100000000668000341000334200000000000000000000000000000000000000000000000000000000000000000000000000000000000203000000003000120100000000000000000000
........................................................TCAAGTGTTCGAATGGA.......................................................................................................................................17167.00670000000000000000000000000000351001200192021000001000000000000024400522000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011100000001200040000000000000000000001
......................................................AATCAAGTGTTCGAATGG........................................................................................................................................18165.00650000000000000000000000000000042001200500000000000001100000000531000112001036340200000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000301030000000000000000000000
..........................................................................................................GAGTATTACATGGCCAATCTC.................................................................................21163.00630000000000000000000000010000810520100000000030000001020100000063333200100001000001000000000000000000000000010000000000000000000000000002000000000000000000000000000000000000000030000000000000000000000
..........................................................................................................GAGTATTACATGGCCAATCT..................................................................................20157.0057000000000000000000000003000034600100028330200001000001441000000200000000000000000000000000100000000000000000000000000001000000000000006000000000000000000000000000000000000100000000000000000000000000
.........................................................................................................TGAGTATTACATGGCCAATCTT.................................................................................22151.00510000000000000000000000000000643000010000000100000000000000000921030100200001020000000000000000000000200000000000000000001000000000000001000000000000000000000000000000000000100010000000000000000000000
..............................................................................................................ATTACATGGCCAATCTCC................................................................................18149.00490000000000000000000000080221002000000000000010000121210100001000320004000012110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.........................................................................GGTTGCCCATGGTGTGTTCATT.................................................................................................................22143.00430000100000000000000000010000121001100000000000000000000000000039100313000000024000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................TGAGTATTACATGGCCAATCTCAA...............................................................................24143.00430000000000000000000000000000000000000000000000000012000000000214179401000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................TGAGTATTACATGGCCAATCTCCA...............................................................................24138.00380000000000000000000000000000010000000000000000000000000000000281113122600000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................AGTATTACATGGCCAATCTCG................................................................................21129.00290000000000000000000000000000000000000000010000000000000000000000212010000221201500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................TGAGTATTACATGGCCA......................................................................................17125.00250000000000000000000000000000613300001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
...........................................................................................................AGTATTACATGGCCAAT....................................................................................17124.0024000000000000000000000000000015300000260000003020100000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................GAGTATTACATGGCCAATCTCA................................................................................22123.0023000000000000000000000000000072700000000000000000000000000000000013100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000
...........................................................................................................AGTATTACATGGCCAATCTCCG...............................................................................22122.0022000000000000000000000000000022000010000000000000000000010000000122211400001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000010000000000000000000000000
...........................................................................................................AGTATTACATGGCCAA.....................................................................................16120.0020000000000000000000000000000000000000000000000000100000000000082810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................TGAGTATTACATGGCCAATCTCTA...............................................................................24118.0018000000000000000000000000000003010000000000000000000000000000000063200000010000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
...........................................................................................................AGTATTACATGGCCAATCTCCAA..............................................................................23218.0036000000000000000000000001001021110000000000011011000000000000022382011200001011000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................GTATTACATGGCCAATCTC.................................................................................19116.0016000000000000010000000000000024100000000000000000000000010000002102000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................CGAAATCAAGTGTTCGAATGGA.......................................................................................................................................22116.0016000000000000000000000000000000000100000000000000000000000000010400022400000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................AGTATTACATGGCCAATCC..................................................................................19115.0015000000000000000000000000000010000000016111010000000000000000000110010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................TGAGTATTACATGGCCAATCC..................................................................................21115.0015000000000000000000000000000000000000000022400000000000000000010201000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................AGGTTGCCCATGGTGTGTTC....................................................................................................................20115.0015000000000000000000000003010006000011100000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................TGAGTATTACATGGCCAATCTATC...............................................................................24214.50290000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002302400000000
..........................................................................................................GAGTATTACATGGCCAATCTCT................................................................................22114.0014000000000000000000000000000025100000000000000000000000000000010110000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000
.........................................................................................................TGAGTATTACATGGCCAATCTCAG...............................................................................24113.0013000000000000000000000000000000000000000000000000000000000000001191100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................GTATTACATGGCCAATCT..................................................................................18113.0013000000000000000000000000000054300010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................TATTACATGGCCAATCTCC................................................................................19112.0012000000000000000000000000000001200000000000000000100000000000001210000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000
................................................................................................................................TTTCGGCACTAAAATCTTCCT...........................................................21111.0011000000000000000000000000000000000000000000000000000000000000001100026100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................AGTATTACATGGCCAATCTCCGA..............................................................................23111.0011000000000000000000000000000000000000000000000000001000000000000041011300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................AGGTTGCCCATGGTGTGTTCAT..................................................................................................................22110.0010000000000000000000000000001001100000000000000000001000000000000111001100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................TGAGTATTACATGGCCAATCTCCT...............................................................................24110.0010000000000000000000000000001000010000000000000000000000000000003031000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................GGTTGCCCATGGTGTGTTCATTA................................................................................................................23110.00100000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................TGAGTATTACATGGCCAATCTCAAA..............................................................................25110.0010000000000000000000000000000000000000000000000000000000000000000125110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................ATTACATGGCCAATCTCCA...............................................................................1919.009000000000000000000000004000000000000000000000000002300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................TGAGTATTACATGGCCAATCTCGA...............................................................................2419.009000000000000000000000000000000000000000000000000001000000000000033200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................AGTATTACATGGCCAATCTCCC...............................................................................2218.008000000000000000000000001000001000010000000000000000000000000020000020100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................GAAATCAAGTGTTCGAATGGATC.....................................................................................................................................2318.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000
...........................................................................................................AGTATTACATGGCCAATCTCCTT..............................................................................2317.007000000000000000000000000000001000000000000000000000000000000011010000000000000000000000000000000000000000010010000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
...........................................................................................................AGTATTACATGGCCAATCTCCAG..............................................................................2317.007000000000000000000000000000000000001000000000000000000000000001000031000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................TATTACATGGCCAATCTC.................................................................................1817.007000000000000000000000000000001000000000000000000001000000000000100000000020100000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................TGAGTATTACATGGCCAATCTAA................................................................................2317.007000000000000000000000000000001010010000000000000000000000000001000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................AGTATTACATGGCCAATCTA.................................................................................2037.0021000000000000000000000000000024000010000000000001000000000000032100000100002200000000000000000000000100000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................CAAGTGTTCGAATGGA.......................................................................................................................................1617.007000000000000000000000000000000000000000310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000200000000000000000000000000
...........................................................................................................AGTATTACATGGCCAATCTCCTA..............................................................................2317.007000000000000000000000000000010000000000000000000000000000000020020001000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................AGTATTACATGGCCAATCTCAA...............................................................................2216.006000000000000000000000001000000000000000120000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................TGAGTATTACATGGCCAATCTATA...............................................................................2416.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110400000000
.........................................................................................................TGAGTATTACATGGCCAATCTAT................................................................................2316.006000000000000000000000000000010100000000000000000000000000000000000001000000010000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
.................................................CTCGAAATCAAGTGTTCGAATGGA.......................................................................................................................................2415.005000000000000000000000000000000000000000000000000000000000000001000001200000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................AGTATTACATGGCCAATCTG.................................................................................2015.005000000000000000000000000000000300001000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................AGTATTACATGGCCAATCTT.................................................................................2015.005000000000000000000000001000000100000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................TGAGTATTACATGGCCAATCTAG................................................................................2315.005000000000000000000000000000001000000100000000000000100000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
.........................................................................................................TGAGTATTACATGGCCAATCTG.................................................................................2215.005000000000000000000000000000001100000000000000100000000000000000000000100000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................TTACATGGCCAATCTCC................................................................................1724.509000000000000000000000000000003000000000000000000000000000000022000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................TGAGTATTACATGGCCAATCA..................................................................................2114.004000000000000000000000000000001000010000000100000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................TGAGTATTACATGGCCAATCTTT................................................................................2314.004000000000000000000000000000001010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
...............................................................................................................................CTTTCGGCACTAAAATCTTCC............................................................2114.004000000000000000000000000000000000000000000000000000000000000021000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................TATTACATGGCCAATCT..................................................................................1714.004000000000000000000000000000002000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................AGGTTGCCCATGGTGTGTTCATT.................................................................................................................2314.004000000000000000000000000000000100000100000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
.........................................................................................................TGAGTATTACATGGCCAATCG..................................................................................2114.004000000000000000000000000000000000000000100100010000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................AGTATTACATGGCCAATCTCCCA..............................................................................2314.004000000000000000000000000000000000000000000000000000000000000000010000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................TGAGTATTACATGGCCAATCTAAA...............................................................................2414.004000000000000000000000000000000000000000000000000000000000000001100000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................AAATCAAGTGTTCGAATGGATC.....................................................................................................................................2214.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000
.........................................................................................................TGAGTATTACATGGCCAATCTCCG...............................................................................2414.004000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...........................................................................................................AGTATTACATGGCCAATCA..................................................................................1914.004000000000000000000000000000000000000000001100002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................ATTACATGGCCAATCTCT................................................................................1853.2016000000000000000000000003001000000000000000000000013610000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
cavPor3
ATC-CCATCCTTAGGCCTGGCATCTGGGAC---TCGGCAATA-CAAGCACACT-AGTCGGGTACTTGAATGGAGGTTGTCCATGGTGTGTTCATTTTATTTATGATGAGTATTACATGGCCAATCTCTTTTCGGTACTAAAATCTTCTCGGGAAAACTTCA-------------------GCGCCTGCACGGGGTAAGGA-AACGGGTSizeHit CountTotal NormTotal
No Reads
dipOrd1
GTCTCC---------CCTGCTGCCTGGGAGACCCCCGCGGTGACCGCCACCCT-AGCCAGGTGCTCGAATGGAGGTTGTCCATGGTGTGTTCATTTTATTTATGATGAGTATTACATGGCCAATCTCCTTTCGGTACTAAAGTCTTCTTGGGAAGCCGTCACAG---GGAGCT------------CGCGCCGG-TAAGAAGAATGAAGSizeHit CountTotal NormTotal
No Reads
hetGal2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
ochPri2
------------------------------------------------------AGTCGGGTACTCGAATGGAGGTTGTCCATGGTGTGTTCATTTTATTTATGATGAGTATTACATGGCCAATCTCCTTTCGGTACTAAATTCTTCTTGGGGAGGCTCC------------------------------------------------SizeHit CountTotal NormTotal
No Reads
oryCun2
GTCTCTGTCCTCAGGGCTGCTGTCGGGGAC---GCACCAGGAGGGAGCACCCT-AGTCAGGTACTTGAATGGAGGTTGTCCATGGTGTGTTCATTTTATTTATGATGAGTATTACATGGCCAATCTCCTTTCGGTACTAAGTTCTTCTTGGGGAGGCTCCACAAGTGG-ACGTCCAGCCGGCTGCCGTGCGGGGTAAGAA-GCCGACCSizeHit CountTotal NormTotalGSM1528820
Adult_testes		GSM1528821
Adult_testes_Mili_IP
No Reads
rn5
GACTCCATCTTCAGGTCTGTGGCCTGAGAC---GTAGCAATG-CAAGCTCTCGAAATCAAGTGTTCGAATGGAGGTTGTCCATGGTGTGTTCATTTTATTTATGATGAGTATTACATGGCCAATCTCCTTTCGGCACTAAAATCTTCCTGGGAGAGCTTCT-------------------CCGACTGTGCAGGTTAGGGG-AACAAATSizeHit CountTotal NormTotalGSM1528817
Adult_testes		GSM1528818
Adult_testes_Mili_IP		GSM1528819
10dpp_testes
...........................................................................................................AGTATTACATGGCCAATCT..................................................................................191107.00107000
.........................................................................................................TGAGTATTACATGGCCAATCT..................................................................................21159.0059000
.........................................................................................................TGAGTATTACATGGCCAATC...................................................................................20126.0026000
...........................................................................................................AGTATTACATGGCCAATCTCC................................................................................21116.0016000
...........................................................................................................AGTATTACATGGCCAATC...................................................................................18115.0015000
...........................................................................................................AGTATTACATGGCCAATCTCCA...............................................................................22112.0012000
.........................................................................................................TGAGTATTACATGGCCAAT....................................................................................19110.0010000
.........................................................................................................TGAGTATTACATGGCCAATCTC.................................................................................2216.006000
...........................................................................................................AGTATTACATGGCCAATCTC.................................................................................2014.004000
............................................................................................................GTATTACATGGCCAATCT..................................................................................1813.003000
...........................................................................................................AGTATTACATGGCCAAT....................................................................................1713.003000
...........................................................................................................AGTATTACATGGCCAATCTCCAA..............................................................................2313.003000
.........................................................................................................TGAGTATTACATGGCCAATCTCC................................................................................2312.002000
............................................................................................................GTATTACATGGCCAATCTCC................................................................................2012.002000
........................................................................................................ATGAGTATTACATGGCCAATCTC.................................................................................2312.002000
............................................................................................................GTATTACATGGCCAATCTC.................................................................................1912.002000
........................................................................................................ATGAGTATTACATGGCCAATCT..................................................................................2212.002000
...........................................................................................................AGTATTACATGGCCAATCTCCTA..............................................................................2311.001000
.........................................................................GGTTGTCCATGGTGTGTTCA...................................................................................................................2011.001000
...........................................................................................................AGTATTACATGGCCAATCTCT................................................................................2111.001000
.........................................................................................................TGAGTATTACATGGCCAATCTT.................................................................................2211.001000
..........................................................................................................GAGTATTACATGGCCAATCT..................................................................................2011.001000
...........................................................................................................AGTATTACATGGCCAATCTCCAG..............................................................................2311.001000
.........................................................................................................TGAGTATTACATGGCCAATCTA.................................................................................2211.001000
............................................................................................................GTATTACATGGCCAATCTCCA...............................................................................2111.001000
..........................................................................................................GAGTATTACATGGCCAAT....................................................................................1811.001000
.............................................................................................................TATTACATGGCCAATCT..................................................................................1711.001000
speTri2
ATCTCTGTCCTTAGGCCTGCCACCAGGGAC---ACACTGCAG-CCAGCACCCG-AGTCCGGTACTCGAATGGAGGTTGTCCATGGTGTGTTCATTATATTTATGATGAGTATTACATGGCCAATCTCCTTTCGGTACTAAATTCTTCTTGGGAAAACTTCGCCAGGGGAAGCTCCAGCCAGTGCCTGTGCAGGGTAAGGA-AATGGGTSizeHit CountTotal NormTotal
No Reads

Generated: 06/17/2015 at 02:31 PM