ID:

mmu-mir-489

 Coordinate:

chr6:3721897-3722003 -

 Confidence:

Known

 Type:

Unknown

 [View on miRBase]
[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-28.6
mature
star
  1. chr12:113880712-113880725 +
  2. chr14:15970064-15970077 +
  3. chr14:62737968-62737981 +
  4. chr16:83605733-83605746 +
  5. chr18:37915645-37915658 -
  6. chr18:61996395-61996408 +
  7. chr2:75575071-75575084 +
  8. chr2:167065004-167065017 +
  9. chr3:108046202-108046215 -
  10. chr5:117690717-117690730 +
  11. chr7:27525533-27525546 +
  12. chr7:104571057-104571070 -
  13. chr7:138675298-138675311 +
  14. chr8:38224126-38224139 -
  15. chr8:127279315-127279328 +
  16. chr9:55430586-55430599 +
  17. chr9:88193513-88193526 +
  18. chrX:93164908-93164921 +
  19. chrX:122241732-122241745 -
  20. chrX:163009582-163009595 -
  21. chr14:23316769-23316782 -
  22. chr17:73496875-73496888 -
  23. chr6:3721962-3721975 -

Sense Strand Reads

TGAGTTTTCAGAACCTACAACAGGACCTGGTGACGCCTCATCTGCTGCTAACTGCTGCAGTGGCAGCTTGGTTGTCATATGTGTGATGACACTTTCTAAAGTCTTCCAGAATGACACCACATATATGGCAGCTAAACTGTTACATGGAACAACAAGTAAGATATAGGCTTGTGTGTTGGTTAGTTTTTAAAGACATGTGACATGTTT
***************************************************************(((.((((((((((((((((((.((.((..((((..........)))))).)).)))))))))))))))))).)))........************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR391851
embryo		 SRR391853
embryo		 SRR206939
brain		 SRR391852
embryo		 SRR206940
brain		 SRR206942
brain		 SRR391848
embryo		 SRR391847
embryo		 SRR206941
brain		 SRR391846
embryo		 SRR391845
embryo		 SRR553582
brain		 SRR391849
embryo		 SRR038744
brain		 SRR553585
kidney		 SRR391850
embryo		 GSM510444
brain		 SRR037906
brain		 SRR037905
brain		 SRR038741
brain		 SRR248524
testes		 SRR116846
epididymis		 GSM317181
brain		 SRR042477
brain		 GSM317182
brain		 SRR037920
embryo		 SRR248523
testes		 SRR248527
testes		 SRR039610
brain		 SRR037904
brain		 SRR037907
brain		 SRR037919
embryo		 SRR042478
lung		 SRR042483
muscle		 SRR553584
heart		 SRR039184
fibroblast		 SRR345201
brain		 SRR039153
muscle		 SRR065046
liver		 SRR059767
thymus		 SRR059770
spleen		 SRR065058
pancreas		 SRR345197
brain		 SRR345198
brain		 SRR059772
spleen		 SRR345203
brain		 SRR059771
spleen		 SRR095855BC3
heart
.............................................................................................................AATGACACCACATATATGGCAGC........................................................................... 23 0 1 984.00 984 115 139 115 94 96 96 30 44 54 34 32 42 12 20 23 13 4 4 1 4 3 1 1 0 0 2 3 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACATATATGGCAG............................................................................ 22 0 1 391.00 391 59 46 29 55 24 18 35 16 9 13 18 11 18 6 3 7 6 5 3 2 1 1 1 2 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................ATGACACCACATATATGGCAGC........................................................................... 22 0 1 81.00 81 16 14 5 9 5 4 5 4 1 7 2 1 5 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACATATATGGCA............................................................................. 21 0 1 54.00 54 8 7 2 3 0 1 5 4 2 1 5 1 3 2 0 1 3 1 2 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGACACCACATATATGGCAGC........................................................................... 21 0 1 53.00 53 1 2 14 0 17 4 3 1 2 1 0 1 0 3 2 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................ATGACACCACATATATGGCAG............................................................................ 21 0 1 42.00 42 9 5 2 7 3 3 1 3 1 3 2 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACATATATGGC.............................................................................. 20 0 1 36.00 36 0 0 9 0 5 12 0 0 0 0 0 2 0 3 4 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AGTGACATCACATATACGGCAGC........................................................................... 23 3 6 26.83 161 0 0 0 0 0 0 74 0 0 0 0 0 48 0 0 36 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 1 0 0 0 0 0 0
.............................................................................................................AATGACACCACATATATGGCAGG........................................................................... 23 1 1 21.00 21 2 1 0 1 0 0 0 5 0 3 4 3 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGACACCACATATATGGCAG............................................................................ 20 0 1 13.00 13 1 0 1 3 0 2 1 0 0 2 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACATATATGGCAGCA.......................................................................... 24 1 1 11.00 11 1 0 2 3 0 0 0 2 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACATATATGG............................................................................... 19 0 2 7.50 15 0 0 1 0 1 1 0 1 2 0 2 0 0 1 1 0 4 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACATATATGGCAGA........................................................................... 23 1 1 7.00 7 3 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACATATATGGCAGT........................................................................... 23 1 1 5.00 5 0 0 1 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGACACCACATATATGGCAGCA.......................................................................... 22 1 1 5.00 5 1 0 1 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................ATGACACCACATATATGGCA............................................................................. 20 0 1 5.00 5 0 0 2 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACAGATATGGCAGC........................................................................... 23 1 1 4.00 4 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACATATATGGCAGCT.......................................................................... 24 0 1 4.00 4 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATTACACCACATATATGGCAGC........................................................................... 23 1 1 4.00 4 0 0 3 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACATATATGGCG............................................................................. 21 1 1 3.00 3 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACATATATGGCAGCAA......................................................................... 25 1 1 3.00 3 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACATATATGGCAGCAT......................................................................... 25 2 1 3.00 3 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGACACCACATATATGGCAGA........................................................................... 21 1 1 3.00 3 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACATATATG................................................................................ 18 0 2 3.00 6 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGACACCACATATATGGCAGCT.......................................................................... 22 0 1 3.00 3 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGACACCACATATATGGCAGCTA......................................................................... 23 0 1 3.00 3 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................ATGACACCACATATATGGCAGT........................................................................... 22 1 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACACATATGGCAGC........................................................................... 23 1 1 2.00 2 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACGCCACATATATGGCAG............................................................................ 22 1 1 2.00 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................ATGACACCACATATATGGCAGG........................................................................... 22 1 1 2.00 2 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................ATGACACCACATATATGGCAGCA.......................................................................... 23 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACAACACATATATGGCAGC........................................................................... 23 1 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGACATCACATATACGGCAGC........................................................................... 21 2 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................ATTGACACCACATATATGGCAGC........................................................................... 23 1 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................CAATGACACCACATATATGGCAGC........................................................................... 24 1 1 2.00 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACAGATATGGCAG............................................................................ 22 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................ATGACACCACATATATGGCAGA........................................................................... 22 1 1 2.00 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................ATGACACCACATATATGGC.............................................................................. 19 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACATATATGGCAGCG.......................................................................... 24 1 1 2.00 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACATATATAGCAGC........................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACATAAATGGCAGC........................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACATATATGGCGGC........................................................................... 23 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACATATATGGCAC............................................................................ 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................ATGACACCACATATATAGCAGC........................................................................... 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACAAATATGGCA............................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACTACATATATGGCAGC........................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGACACCACATATATGGCAGCG.......................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................GATGACACCACATATATGGCAG............................................................................ 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACATACATGGCAT............................................................................ 22 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACAAATATGGCAGC........................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................ATGACACCACATGTATGGCAG............................................................................ 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................TATGACACCACATATATGGCAGC........................................................................... 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGAGACCACATATATGGC.............................................................................. 20 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACATATACGGCAGC........................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACATATACGGCAG............................................................................ 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACAGATATGGCAGG........................................................................... 23 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACATATATGCCAG............................................................................ 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACATATATGGCCGC........................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACATATATAGCAG............................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................CATGACACCACATATATGGCAGC........................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGACACCACATATATGGCAGT........................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACATACATGGCAGC........................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATAACACCACATATATGGCAGC........................................................................... 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACATATATGGCAGCATA........................................................................ 26 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGACACCACATATATGGCAGCC.......................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................TATGAAACCACATATATGGCAGC........................................................................... 23 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACACATATGGCAG............................................................................ 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACATATATCGCAGC........................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACCTATATGGCA............................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................CAATGACACCACATATATGGCAG............................................................................ 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACAAATATGGCAG............................................................................ 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACATATATGCCAGC........................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCAAATATATGGCAGC........................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACATCACATATACGGCAGC........................................................................... 23 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACATATCTGGCAGC........................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACATATATGTCAGC........................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACCCCACATATATGGC.............................................................................. 20 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACATCACATATATGGCAGC........................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGACACCACATATATGGCAGCCAAA....................................................................... 25 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGACACCACATATATGGCAGCAG......................................................................... 23 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACATATATTGCAGA........................................................................... 23 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACATATTTGGCAGC........................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACATATATGGGAGC........................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................ATGACACCACATATATTGCAG............................................................................ 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................AAGGTCGTCATATGTGTGATGA...................................................................................................................... 22 3 4 0.75 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACATATA.................................................................................. 16 0 3 0.67 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACATATATAGC.............................................................................. 20 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACATATATGGAAGC........................................................................... 23 1 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACCCATATGGCAGC........................................................................... 23 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACATATATGGCAGCATT........................................................................ 26 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACATATATGGCAA............................................................................ 22 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................ATGACACCACATATATGG............................................................................... 18 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................CATGCCACCACATATATGGCAGC........................................................................... 23 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................AACAGGACCCGGAGACGCC.......................................................................................................................................................................... 19 2 8 0.50 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0
..............................................................................................................ATGACACCACACTTATGGCAG............................................................................ 21 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACATATATTGCAT............................................................................ 22 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................ACGACATCACATATACGGCAGC........................................................................... 22 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACATATATGGAAGG........................................................................... 23 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................AGGACATCACATATACGGCAGC........................................................................... 22 3 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AGTGACAACACATATACGGCAGC........................................................................... 23 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................AGGACCTGGCGGCGCTTCATCT.................................................................................................................................................................... 22 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................GACATCACATATACGGCAGC........................................................................... 20 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................ATTACACCCCATATATGGCAG............................................................................ 21 2 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................CAATGACACCACATATATG................................................................................ 19 1 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TGACACCACATATATGTCAGCAG......................................................................... 23 3 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TAAGATAGAGGCTTGTATGTT.............................. 21 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AGTGACATCACATATACGGCAG............................................................................ 22 3 13 0.15 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGACACCACATATCAGGCAGG........................................................................... 23 3 7 0.14 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................CAACAGGACTTGGTGTCGC........................................................................................................................................................................... 19 2 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................AATGACACCACATATATTTCATC........................................................................... 23 3 11 0.09 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................AACAGCACTTGGTGACGGCTC........................................................................................................................................................................ 21 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................TTCAGTGGCAGCTTGGTGGT.................................................................................................................................... 20 2 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................CATGCCACCACATATATGGCAGG........................................................................... 23 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................GTGACATCACATATACGGCAGC........................................................................... 22 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TCAGATACCGGCTTGTGTGTT.............................. 21 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................GGTCGTCATATGTGTAACGA...................................................................................................................... 20 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.......................................................TGCAGCGGGAGTTTGGTTGTC................................................................................................................................... 21 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......TCGGAACCTACAACAGGTCTT................................................................................................................................................................................... 21 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...................................................................AAGGTCGTCATATGTGTGAT........................................................................................................................ 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...................ACAGGACCCGGAGACGCC.......................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................ATGTGTGATGACAC................................................................................................................... 14 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

ACTCAAAAGTCTTGGATGTTGTCCTGGACCACTGCGGAGTAGACGACGATTGACGACGTCACCGTCGAACCAACAGTATACACACTACTGTGAAAGATTTCAGAAGGTCTTACTGTGGTGTATATACCGTCGATTTGACAATGTACCTTGTTGTTCATTCTATATCCGAACACACAACCAATCAAAAATTTCTGTACACTGTACAAA
************************************************************(((.((((((((((((((((((.((.((..((((..........)))))).)).)))))))))))))))))).)))........*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR073954
blood		 SRR073955
blood		 SRR059771
spleen		 SRR345198
brain		 SRR037902
testes		 SRR039184
fibroblast		 SRR095853
heart		 SRR345197
brain		 SRR345200
brain		 SRR345203
brain
...................TGTCCTGGACAACTGCGC.......................................................................................................................................................................... 18 2 9 0.11 1 1 0 0 0 0 0 0 0 0 0
...................TGTCCTGGGCCATTGCGG.......................................................................................................................................................................... 18 2 10 0.10 1 0 1 0 0 0 0 0 0 0 0
...................TGTCCGGGACCACTGCGC.......................................................................................................................................................................... 18 2 20 0.10 2 2 0 0 0 0 0 0 0 0 0
...............................CTGCGCATTAGACGACGA.............................................................................................................................................................. 18 2 13 0.08 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................CCAGAAGGTCTTGCTGTGG......................................................................................... 19 2 16 0.06 1 0 0 0 1 0 0 0 0 0 0
...................TGTCCTGGACCACAGCGC.......................................................................................................................................................................... 18 2 17 0.06 1 1 0 0 0 0 0 0 0 0 0
...............................................................................ACACACTACTGTGCAAGAA............................................................................................................. 19 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0
...........................................CGACGATTGACG........................................................................................................................................................ 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1
...................................................................TTCCAGCAGTATACACACTA........................................................................................................................ 20 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0
.......................CTGGACCACTGC............................................................................................................................................................................ 12 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0
......AAGCCTTGGATGTTGCC........................................................................................................................................................................................ 17 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...................TATCCTGGGCCACTGCG........................................................................................................................................................................... 17 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0
......ATGTCTTGGATGTTGTACT...................................................................................................................................................................................... 19 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0
...............................................................................ACACACTACT...................................................................................................................... 10 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
mm10 chr6:3721847-3722053 - mmu-mir-489 TGtGTT-TTgtGttggTtgttgtGGtggT---------------------------------------------------GGTGACGCCTCATCTGCT-GCTAACTGCTGC----AGTGGCAGCTTGGTTGTCATATGTGTGATGACACTTTCTAAAGTCTTCCAGAATGACACCACATATATGGCAGCTAAACTGTTACATGGAACAACAAGTAAGAT-ATAGGCTTGTGTGTTGGT-TAGTTTT-TA---------------------------------------------------AAGACATGTGACATGTTT---
cavPor3 scaffold_11:25054383-25054412 - G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTTATTCAGACAAGCAATATACACTTA
dipOrd1 scaffold_1777:42445-42707 - TgtgTTTTggtGtt---------GgTtGtGTTTTGCAGAAA---GTTAAAA-GT--ATTTCTCAAA-TGATTCC-------ATGACGTCTCAACAGCT-GA---TTACT---GTTGTGGGCAGCTTGGCTGTCATATGTGTGGAGCCATTTGCTTGAACTTTGAGAAGTCACATCGCATATATGATGGCTAAACTGCCACACTGGAGA-----------------------TTTTGGTTTGGTTTT-TGACAAATCATGTAACATAGTTTATTTGCAAAACTTGAACACTAGTCTTTATTGA----AAGAATATGCCCTTG
hetGal2 Unknown ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ochPri2 Unknown TGttTT-TggtGttTTTT-----ggTGGGgTtTGGttGGgG---gTgttAGTCT--GGTGTGCGTA-GGA----CCTGTG--TGATGTTCCTGCTGCT-GT---CTCCCACTATTGGTGGCAGCTTGGTGGTCGTATGTGTGGTGTCATTCACTTGAATCCTTAGGAGTGACATCACATATACGGCAGCTAAACTGCTACAAGGGACAACAAGTAAGT--------------------GTGTGTGT-TGAAGAAGCATGTAAGATGGTTTG---------------------GTTTTATTCAGACAAACAGGAGGTCCCTA
oryCun2 Unknown TGttTT-TggtGtttGttgtGTGggTGGgtTGTGGttGGgt---gTTtttGTtTtTGTTGTGCAAAAGAA----CCAGTG--TGATGTTTGTGCTGCTTGA---CTACC--TGTTGGTGGCAGCTTGGTGGTCGTATGTGTGGTGCCATTCACTTGAACCTTTAGGGGTGACATCACATATACGGTGGCTAAACTGCTACAAGGGACAACGAGTAAGT--GT-------------------------AGAAGAATCACATA-GATGGTTTA---------------------TCTTTACTCATGCAAGCAATATGCCCCCA
rn5 chr4:28564109-28564351 - rno-mir-489 TttGTT-TTgttttggTtgtt--ggTGGTGTtgtGttGGTG---TTttTtGTtTTTtTTGgt-gtt-tGGtCCT------GGTGGCGCCTCATCTGCT-GA---CTGCTAC----AGTGGCAGCTTGGTTGTCGTATGCGTGATGACACGTTCTCGTGTATTCCAGAATGACATCACATATATGGCAGCTAAACTGTTACA-GGAACAACAAGTAATATTATAGATAAGTGAGTTGGT-TGGTTTTTTA---------------------------------------------------AAGACATGTGACATGTTT---
speTri2 Unknown TtttTT-TgTGGttgggtGttTGGGtTgTGGtGTGTGGGtGGgtgTTgttGTtTTTtTTgtg-gtt-ttGttCC------AATGA-GGATCAGCTGCT-GA---TTACT------GGTGGCAGCGTGGCTGTTGGATATATGGCGTCATTTACTTGAACTTTTGGAAGTGACATCAAATATCCAGCAGCTAAACTGCCATGGGGGACAACAGTTAAGAG-AGAGATT-------------------------------GTTAGTTTGTTTATAGGCAAAATTCGAACATTAGTCTTTTCTCAAACAAGCAATATACCCTTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
mm10
TGtGTT-TTgtGttggTtgttgtGGtggT---------------------------------------------------GGTGACGCCTCATCTGCT-GCTAACTGCTGC----AGTGGCAGCTTGGTTGTCATATGTGTGATGACACTTTCTAAAGTCTTCCAGAATGACACCACATATATGGCAGCTAAACTGTTACATGGAACAACAAGTAAGAT-ATAGGCTTGTGTGTTGGT-TAGTTTT-TA---------------------------------------------------AAGACATGTGACATGTTT---SizeHit CountTotal NormTotalSRR042455
blood		SRR042459
blood		SRR042460
blood		SRR069834
blood		SRR073954
blood		SRR073955
blood		SRR525238
Blood		SRR525237
Blood		SRR042456
bone marrow		SRR042457
bone marrow		SRR042461
bone marrow		SRR042462
bone marrow		GSM317181
brain		GSM317182
brain		GSM361394
brain		GSM361395
brain		GSM361398
brain		GSM361399
brain		GSM361402
brain		GSM361407
brain		GSM361408
brain		GSM361415
brain		GSM361430
brain		GSM510444
brain		SRR037904
brain		SRR037905
brain		SRR037906
brain		SRR037907
brain		SRR038741
brain		SRR038744
brain		SRR039610
brain		SRR042477
brain		SRR060845
brain		SRR206939
brain		SRR206940
brain		SRR206941
brain		SRR206942
brain		SRR345196
brain		SRR345197
brain		SRR345198
brain		SRR345199
brain		SRR345200
brain		SRR345201
brain		SRR345202
brain		SRR345203
brain		SRR345204
brain		SRR345205
brain		SRR345206
brain		SRR345207
brain		SRR037919
embryo		SRR037920
embryo		SRR037921
embryo		SRR037922
embryo		SRR037923
embryo		SRR037924
embryo		SRR037925
embryo		SRR037926
embryo		SRR037927
embryo		SRR037928
embryo		SRR037929
embryo		SRR037930
embryo		SRR391845
embryo		SRR391846
embryo		SRR391847
embryo		SRR391848
embryo		SRR391849
embryo		SRR391850
embryo		SRR391851
embryo		SRR391852
embryo		SRR391853
embryo		SRR116846
epididymis		GSM566419
fibroblast		GSM566420
fibroblast		SRR039183
fibroblast		SRR039184
fibroblast		SRR039185
fibroblast		SRR039186
fibroblast		SRR042475
fibroblast		SRR390297
fibroblast		SRR390298
fibroblast		SRR042484
salivary gland		SRR042476
heart		SRR095853
heart		SRR095855BC1
heart		SRR095855BC10
heart		SRR095855BC2
heart		SRR095855BC3
heart		SRR095855BC4
heart		SRR095855BC5
heart		SRR095855BC6
heart		SRR095855BC7
heart		SRR095855BC8
heart		SRR095855BC9
heart		SRR065052
jejunum		SRR065053
jejunum		SRR065054
jejunum		SRR065055
jejunum		SRR065056
jejunum		SRR042480
kidney		SRR040488
liver		SRR042479
liver		SRR065045
liver		SRR065046
liver		SRR065047
liver		SRR065048
liver		SRR065049
liver		SRR065050
liver		SRR077864
liver		SRR077865
liver		SRR077866
liver		SRR042478
lung		SRR042468
lymph		SRR042469
lymph		SRR042470
lymph		SRR042472
lymph		SRR042473
lymph		SRR039152
muscle		SRR039153
muscle		SRR039154
muscle		SRR042483
muscle		SRR014234
ovary		SRR037896
ovary		SRR037897
ovary		SRR037898
ovary		SRR037899
ovary		SRR042486
ovary		SRR042481
pancreas		SRR065058
pancreas		SRR065059
pancreas		SRR042482
skin		SRR042463
spleen		SRR042465
spleen		SRR042466
spleen		SRR042467
spleen		SRR042471
spleen		SRR042487
spleen		SRR059768
spleen		SRR059769
spleen		SRR059770
spleen		SRR059771
spleen		SRR059772
spleen		SRR059773
spleen		GSM475281
testes		GSM509275
testes		GSM509279
testes		SRR014231
testes		SRR014235
testes		SRR014236
testes		SRR028731
testes		SRR037900
testes		SRR037901
testes		SRR037902
testes		SRR037903
testes		SRR042485
testes		SRR051939
testes		SRR051940
testes		SRR069809
testes		SRR069810
testes		SRR069811
testes		SRR248523
testes		SRR248524
testes		SRR248525
testes		SRR248526
testes		SRR248527
testes		SRR363956
testes		SRR363957
testes		SRR363958
testes		SRR363959
testes		SRR363960
testes		SRR363963
testes		SRR363964
testes		SRR553582
brain		SRR553583
cerebellum		SRR553584
heart		SRR553585
kidney		SRR553602
testes		SRR553603
testes		SRR553604
testes		SRR553586
testes		SRR042464
thymus		SRR059765
thymus		SRR059766
thymus		SRR059767
thymus		SRR032476
uterus		SRR032477
uterus
......................................................................................................................................................................AATGACACCACATATATGGCAGC....................................................................................................................................231984.00984000000000000100000000004014042000011596549600000000000002000000000032344430121311594139100000000000000000000000000000000000000000000000000000000000000000000000000000000000000003300100000004201230000000000
......................................................................................................................................................................AATGACACCACATATATGGCAG.....................................................................................................................................221391.0039100000000000010000000000603512602029249180000000000001100000000001813163518759554610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000110030000000000
.......................................................................................................................................................................ATGACACCACATATATGGCAGC....................................................................................................................................22181.00810000000000000000000000000010000005514000000000000000000000000274551169140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000
......................................................................................................................................................................AATGACACCACATATATGGCA......................................................................................................................................21154.005400000000000000000000000312100200020210000000000000000000000005145318370000000000000000000000000000000000000000100000000100000000000000000000000000000000000000000000000000010000000000000
........................................................................................................................................................................TGACACCACATATATGGCAGC....................................................................................................................................21153.00530000000000000100000000000000031001417240000000000000000000000000113001020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010020000000000
.......................................................................................................................................................................ATGACACCACATATATGGCAG.....................................................................................................................................21142.004200000000000000000000000000100100023130000000000000000000000002331009750000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
......................................................................................................................................................................AATGACACCACATATATGGC.......................................................................................................................................20136.0036000000000000000000000000000003100950120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020040000000000
......................................................................................................................................................................AATGACACCACATATATGGCAGG....................................................................................................................................23121.002100000000000000000000000000000000000000000000000000000000000004350002112000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000
........................................................................................................................................................................TGACACCACATATATGGCAG.....................................................................................................................................20113.001300000000000001000000000000000000010020000000000000000000000000201001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000010000000000000
......................................................................................................................................................................AATGACACCACATATATGGCAGCA...................................................................................................................................24111.001100000000000000000000000000000001020000000000000000000000000000120011300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................AATGACACCACATATATGG........................................................................................................................................1927.501500000000000010000000000400000100011210000000000000000000000002010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
......................................................................................................................................................................AATGACACCACATATATGGCAGA....................................................................................................................................2317.00700000000000000000000000200000000000000000000000000000000000000001003010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................AATGACACCACATATATGGCAGT....................................................................................................................................2315.00500000000000000000000000000000000011000000000000000000000000001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
........................................................................................................................................................................TGACACCACATATATGGCAGCA...................................................................................................................................2215.00500000000000000000000000000000000013000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................ATGACACCACATATATGGCA......................................................................................................................................2015.00500000000000000000000000000000000020000000000000000000000000000002100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................AATGACACCACATATATGGCAGCT...................................................................................................................................2414.00400000000000000000000000000000000000000000000000000000000000000100110100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................AATGACACCACATATATGGCG......................................................................................................................................2113.00300000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................AATGACACCACATATATGGCAGCAT..................................................................................................................................2513.00300000000000000000000000000000000000000000000000000000000000000000000210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................TGACACCACATATATGGCAGA....................................................................................................................................2113.00300000000000000000000000000000000000110000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................AATGACACCACATATATG.........................................................................................................................................1823.00600000000000000000000000200000000000000000000000000000000000002100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
........................................................................................................................................................................TGACACCACATATATGGCAGCT...................................................................................................................................2213.00300000000000000000000000000000000011000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................TGACACCACATATATGGCAGCTA..................................................................................................................................2313.00300000000000000000000000000000000021000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................ATGACACCACATATATGGCAGT....................................................................................................................................2212.00200000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................ATGACACCACATATATGGCAGG....................................................................................................................................2212.00200000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................ATGACACCACATATATGGCAGCA...................................................................................................................................2312.00200000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................ATGACACCACATATATGGCAGA....................................................................................................................................2212.00200000000000000000000000001000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................ATGACACCACATATATGGC.......................................................................................................................................1912.00200000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................AATGACACCACATATATGGCAGCG...................................................................................................................................2412.00200000000000010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................AATGACACCACATATATGGCAC.....................................................................................................................................2211.00100000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................TGACACCACATATATGGCAGCG...................................................................................................................................2211.00100000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................TGACACCACATATATGGCAGT....................................................................................................................................2111.00100000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................TGACACCACATATATGGCAGCC...................................................................................................................................2211.00100000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................TGACACCACATATATGGCAGCAG..................................................................................................................................2311.00100000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................AATGACACCACATATA...........................................................................................................................................1630.67200000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................AATGACACCACATATATGGCAGCATT.................................................................................................................................2620.50100000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................AATGACACCACATATATGGCAA.....................................................................................................................................2220.50100000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................ATGACACCACATATATGG........................................................................................................................................1820.50100000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................ATGTGTGATGACAC............................................................................................................................................................................14200.05100000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
cavPor3
G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTTATTCAGACAAGCAATATACACTTASizeHit CountTotal NormTotal
No Reads
dipOrd1
TgtgTTTTggtGtt---------GgTtGtGTTTTGCAGAAA---GTTAAAA-GT--ATTTCTCAAA-TGATTCC-------ATGACGTCTCAACAGCT-GA---TTACT---GTTGTGGGCAGCTTGGCTGTCATATGTGTGGAGCCATTTGCTTGAACTTTGAGAAGTCACATCGCATATATGATGGCTAAACTGCCACACTGGAGA-----------------------TTTTGGTTTGGTTTT-TGACAAATCATGTAACATAGTTTATTTGCAAAACTTGAACACTAGTCTTTATTGA----AAGAATATGCCCTTGSizeHit CountTotal NormTotal
No Reads
hetGal2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
ochPri2
TGttTT-TggtGttTTTT-----ggTGGGgTtTGGttGGgG---gTgttAGTCT--GGTGTGCGTA-GGA----CCTGTG--TGATGTTCCTGCTGCT-GT---CTCCCACTATTGGTGGCAGCTTGGTGGTCGTATGTGTGGTGTCATTCACTTGAATCCTTAGGAGTGACATCACATATACGGCAGCTAAACTGCTACAAGGGACAACAAGTAAGT--------------------GTGTGTGT-TGAAGAAGCATGTAAGATGGTTTG---------------------GTTTTATTCAGACAAACAGGAGGTCCCTASizeHit CountTotal NormTotal
No Reads
oryCun2
TGttTT-TggtGtttGttgtGTGggTGGgtTGTGGttGGgt---gTTtttGTtTtTGTTGTGCAAAAGAA----CCAGTG--TGATGTTTGTGCTGCTTGA---CTACC--TGTTGGTGGCAGCTTGGTGGTCGTATGTGTGGTGCCATTCACTTGAACCTTTAGGGGTGACATCACATATACGGTGGCTAAACTGCTACAAGGGACAACGAGTAAGT--GT-------------------------AGAAGAATCACATA-GATGGTTTA---------------------TCTTTACTCATGCAAGCAATATGCCCCCASizeHit CountTotal NormTotalGSM1528820
Adult_testes		GSM1528821
Adult_testes_Mili_IP
No Reads
rn5
TttGTT-TTgttttggTtgtt--ggTGGTGTtgtGttGGTG---TTttTtGTtTTTtTTGgt-gtt-tGGtCCT------GGTGGCGCCTCATCTGCT-GA---CTGCTAC----AGTGGCAGCTTGGTTGTCGTATGCGTGATGACACGTTCTCGTGTATTCCAGAATGACATCACATATATGGCAGCTAAACTGTTACA-GGAACAACAAGTAATATTATAGATAAGTGAGTTGGT-TGGTTTTTTA---------------------------------------------------AAGACATGTGACATGTTT---SizeHit CountTotal NormTotalGSM1528817
Adult_testes		GSM1528818
Adult_testes_Mili_IP		GSM1528819
10dpp_testes
.......................................................................................................................................................................ATGACATCACATATATGGCAGCAT..................................................................................................................................2414.004000
.......................................................................................................................................................................ATGACATCACATATATGGCAG.....................................................................................................................................2111.001000
.......................................................................................................................................................................ATGACATCACATATATGGCAGCA...................................................................................................................................2311.001000
......................................................................................................................................................................AATGACATCACATATATGGCAGCA...................................................................................................................................2411.001000
speTri2
TtttTT-TgTGGttgggtGttTGGGtTgTGGtGTGTGGGtGGgtgTTgttGTtTTTtTTgtg-gtt-ttGttCC------AATGA-GGATCAGCTGCT-GA---TTACT------GGTGGCAGCGTGGCTGTTGGATATATGGCGTCATTTACTTGAACTTTTGGAAGTGACATCAAATATCCAGCAGCTAAACTGCCATGGGGGACAACAGTTAAGAG-AGAGATT-------------------------------GTTAGTTTGTTTATAGGCAAAATTCGAACATTAGTCTTTTCTCAAACAAGCAATATACCCTTASizeHit CountTotal NormTotal
No Reads

Generated: 05/01/2015 at 12:30 AM