ID:

mmu-mir-466e

 Coordinate:

chr2:10479088-10479171 +

 Confidence:

Known

 Type:

Unknown

 [View on miRBase]
[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-35.5 -35.4 -35.3
mature
  1. chr2:10474269-10474290 +
  2. chr2:10476681-10476702 +
  3. chr2:10479139-10479160 +
  4. chr2:10481585-10481606 +
  5. chr2:10484020-10484041 +
  6. chr2:10486477-10486498 +
  7. chr2:10488939-10488960 +
  8. chr2:10491390-10491411 +
  9. chr2:10493852-10493873 +
  10. chr2:10496320-10496341 +
  11. chr2:10498735-10498756 +
  12. chr2:10501163-10501184 +
  13. chr2:10503615-10503636 +
  14. chr2:10506059-10506080 +
  15. chr2:10507968-10507989 +
star
  1. chr2:10472553-10472574 +
  2. chr2:10474228-10474249 +
  3. chr2:10476640-10476661 +
  4. chr2:10479098-10479119 +
  5. chr2:10486436-10486457 +
  6. chr2:10488898-10488919 +
  7. chr2:10493811-10493832 +
  8. chr2:10496279-10496300 +
  9. chr2:10498694-10498715 +
  10. chr2:10501122-10501143 +
  11. chr2:10503574-10503595 +
  12. chr9:93407323-93407344 +

Sense Strand Reads

TGATGTGTTAGAGGTCATCCTGGCATTCATGTGATTGCCCCTATGTATGTGTGTATGTGTTGATGTGTGTGTACATGTACATATGTGAATATGATATACATATACATACACGCACACATAAGACACATATGAGCACACAGACACATGGGAATGGCACTCATCAATCCATTTGAGTGATAAGTGA
*********************************************..((((((((((((((.((((((((((..(((((..((((((.........)))))))))))..))))))))))..)))))))))..))))).********************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR390298
fibroblast		 SRR391852
embryo		 SRR391851
embryo		 SRR391853
embryo		 SRR390297
fibroblast		 SRR391847
embryo		 SRR391846
embryo		 SRR391845
embryo		 GSM475281
testes		 SRR248527
testes		 SRR391848
embryo		 SRR069809
testes		 SRR391849
embryo		 SRR037925
embryo		 SRR248523
testes		 SRR059765
thymus		 SRR037924
embryo		 SRR248524
testes		 SRR248526
testes		 SRR391850
embryo		 SRR042471
spleen		 SRR073954
blood		 SRR059767
thymus		 SRR037929
embryo		 SRR037921
embryo		 SRR039185
fibroblast		 SRR039183
fibroblast		 SRR042470
lymph		 SRR037928
embryo		 SRR553583
cerebellum		 GSM510444
brain		 SRR248525
testes		 SRR042473
lymph		 SRR039184
fibroblast		 SRR037920
embryo		 SRR059770
spleen		 SRR553586
testes		 SRR037923
embryo		 SRR037926
embryo		 SRR116846
epididymis		 SRR042465
spleen		 SRR042466
spleen		 SRR069810
testes		 SRR059768
spleen		 SRR037902
testes		 SRR042464
thymus		 SRR042459
blood		 SRR553603
testes		 SRR037927
embryo		 SRR553582
brain		 SRR059769
spleen		 SRR040488
liver		 SRR037901
testes		 SRR037930
embryo		 SRR525238
Blood		 SRR059766
thymus		 SRR014231
testes		 SRR037906
brain		 SRR553604
testes		 SRR042456
bone marrow		 SRR042472
lymph		 SRR032476
uterus		 SRR039186
fibroblast		 SRR037922
embryo		 SRR069811
testes		 SRR042475
fibroblast		 SRR037905
brain		 SRR042469
lymph		 SRR042467
spleen		 SRR038744
brain		 SRR042487
spleen		 SRR206942
brain		 SRR206940
brain		 SRR039610
brain		 SRR206941
brain		 SRR032477
uterus		 SRR037919
embryo		 SRR042468
lymph		 SRR038741
brain		 SRR553602
testes		 SRR073955
blood		 SRR206939
brain		 SRR051940
testes		 SRR042484
salivary gland		 SRR042483
muscle		 SRR037903
testes		 SRR042462
bone marrow		 SRR525237
Blood		 SRR345196
brain		 SRR345197
brain		 SRR042463
spleen		 SRR037900
testes		 SRR037907
brain		 SRR077864
liver		 SRR042460
blood		 SRR553585
kidney		 SRR037904
brain		 SRR042461
bone marrow		 SRR345198
brain		 SRR345207
brain		 SRR042455
blood		 GSM566419
fibroblast		 SRR077866
liver		 SRR345202
brain		 SRR042486
ovary		 SRR069834
blood		 GSM509279
testes		 SRR065052
jejunum		 GSM509275
testes		 SRR065058
pancreas		 SRR345206
brain		 SRR553584
heart		 SRR065059
pancreas		 SRR095855BC3
heart		 SRR042481
pancreas		 SRR095853
heart		 SRR095855BC1
heart		 SRR037897
ovary		 SRR014234
ovary		 SRR065056
jejunum		 SRR345204
brain		 GSM566420
fibroblast		 SRR345199
brain		 GSM317181
brain		 SRR042480
kidney		 SRR037898
ovary		 SRR042477
brain		 SRR345205
brain		 SRR060845
brain		 SRR345201
brain		 SRR077865
liver		 SRR065054
jejunum		 GSM317182
brain		 SRR095855BC7
heart		 SRR037899
ovary		 SRR042485
testes		 SRR065055
jejunum		 SRR095855BC8
heart		 SRR042478
lung		 SRR059771
spleen		 SRR042476
heart		 SRR042482
skin		 SRR014235
testes		 SRR014236
testes		 SRR345203
brain		 SRR065053
jejunum		 SRR095855BC2
heart
.....................................................................................................ATACATACACGCACACATAAGA............................................................. 22 0 15 4762.13 71432 15318 13816 11992 11123 7803 1673 1216 854 754 549 625 214 611 193 363 221 214 212 287 233 142 61 129 85 68 153 118 120 69 209 120 59 68 97 68 64 143 34 28 60 29 33 51 25 52 38 34 68 14 62 20 38 35 16 43 25 3 28 48 38 17 35 27 12 26 43 28 23 26 18 10 13 27 24 11 15 6 6 17 13 4 18 13 7 9 7 6 4 0 0 7 7 9 15 3 10 3 5 0 2 3 0 6 1 4 6 1 2 1 0 1 4 0 0 0 0 1 1 2 1 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0
....................................................................................................TATACATACACGCACACATAAGA............................................................. 23 0 14 3083.29 43166 16403 6470 5035 4549 5350 619 487 343 147 233 184 214 211 311 217 104 375 130 126 73 54 137 68 41 52 85 56 34 42 73 43 41 15 39 38 29 38 84 52 15 8 14 14 8 22 16 40 11 9 20 11 19 25 8 12 16 1 13 9 8 7 4 11 16 9 17 15 4 0 11 11 10 9 4 14 6 9 4 7 11 11 6 7 6 4 2 2 1 0 0 5 4 4 2 3 6 4 1 0 1 1 0 2 0 0 1 1 0 1 0 0 0 0 0 1 0 0 1 2 0 0 0 0 0 0 1 1 2 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................ATACATACACGCACACATAAGAC............................................................ 23 0 15 1371.67 20575 7834 3016 2411 2248 1740 799 559 356 47 288 151 12 159 16 88 39 23 102 41 67 31 38 14 23 11 48 59 18 23 11 12 20 8 25 20 1 5 2 7 11 3 0 3 5 5 9 13 10 2 7 5 8 3 3 2 4 1 2 4 4 2 4 14 5 0 3 4 0 9 7 4 1 1 10 3 2 0 1 2 2 3 3 1 0 1 1 0 2 0 0 3 0 0 0 1 1 0 1 0 2 0 0 0 0 1 0 1 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................ATACATACACGCACACATAAG.............................................................. 21 0 15 1047.00 15705 3140 3538 3075 2616 512 269 225 168 206 159 154 77 120 26 100 75 21 60 88 54 70 19 31 12 16 21 30 60 22 40 39 25 28 30 13 18 24 4 1 37 17 31 28 24 20 25 5 14 11 16 7 8 12 1 16 8 0 10 15 12 10 14 6 5 10 12 8 4 6 9 10 3 13 7 6 5 2 6 7 4 1 3 5 1 1 0 9 1 0 0 0 0 3 2 0 0 1 2 2 1 2 1 3 1 4 0 1 0 1 0 0 1 1 0 0 0 2 0 0 0 0 1 0 2 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................TATACATACACGCACACATAAG.............................................................. 22 0 14 1033.64 14471 1322 3869 2688 2492 1064 223 196 128 111 140 96 130 75 89 79 102 101 52 91 25 105 78 62 45 37 56 42 36 36 33 43 30 43 58 20 27 13 29 23 37 28 22 14 17 14 20 12 6 13 17 17 21 11 4 5 8 0 15 6 15 16 11 11 5 4 12 10 9 10 17 14 28 7 7 12 7 3 8 8 7 7 1 7 2 6 4 3 3 0 0 4 1 1 0 3 1 6 2 0 1 2 1 3 3 0 0 1 1 1 0 0 0 1 0 2 0 2 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................TACATACACGCACACATAAGA............................................................. 21 0 15 294.93 4424 2550 432 429 326 244 50 28 19 14 11 35 6 33 26 6 11 28 6 7 14 8 16 4 13 4 6 3 6 1 8 1 3 4 5 7 6 5 3 3 0 0 2 0 1 0 0 1 2 1 3 2 1 2 2 0 0 0 1 2 0 1 0 1 1 0 1 1 2 3 0 1 2 0 0 0 0 1 2 0 0 1 2 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TATACATACACGCACACATAA............................................................... 21 0 14 180.50 2527 911 95 37 50 135 77 50 37 77 16 41 111 17 4 7 51 7 5 4 24 102 12 31 10 3 12 14 44 8 4 9 1 63 14 6 37 1 1 2 3 58 34 12 4 1 21 8 1 1 1 13 12 11 3 19 1 0 2 0 11 18 20 1 1 8 6 4 13 11 3 14 1 2 1 2 11 1 9 0 0 1 0 2 6 7 1 4 1 0 0 3 1 0 0 0 1 2 0 0 2 1 0 0 3 1 0 0 3 1 1 2 0 1 0 3 0 0 0 0 3 0 0 0 0 2 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................TGATGTGTGTGTACATGTACAT...................................................................................................... 22 0 12 174.08 2089 0 147 66 91 99 89 94 88 51 29 128 204 141 107 25 21 46 21 10 67 0 21 13 85 69 12 10 2 25 0 23 16 0 9 36 9 0 26 23 1 0 0 4 6 14 0 1 0 25 1 3 1 3 18 1 4 0 5 0 2 0 0 6 23 6 1 4 1 1 4 0 7 2 2 2 2 13 0 2 0 2 5 0 0 0 1 0 0 0 0 1 2 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 3 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TATACATACACGCACACATAAGAC............................................................ 24 0 14 154.64 2165 0 525 445 341 329 110 101 65 1 45 11 6 14 10 24 5 3 20 9 3 0 26 1 5 5 9 2 1 5 3 0 3 0 9 2 0 2 0 2 2 0 0 2 0 0 0 3 0 0 0 0 0 0 0 0 0 4 3 0 0 0 0 1 0 1 0 0 0 0 1 1 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................ATACATACACGCACACATAAGACT........................................................... 24 1 15 153.00 2295 0 439 464 340 216 144 84 87 13 85 41 10 31 1 13 17 3 17 9 25 8 4 20 3 5 20 13 5 2 5 2 8 3 10 5 3 10 0 0 12 2 2 9 2 2 1 11 8 1 3 1 2 0 0 0 6 22 2 8 1 2 1 6 0 2 0 2 4 0 2 1 0 0 0 0 2 1 2 2 0 1 1 0 1 0 0 0 2 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................TGATGTGTGTGTACATGTACATAT.................................................................................................... 24 0 2 131.00 262 0 23 12 21 0 14 18 5 6 9 10 2 3 13 9 4 8 11 5 1 0 2 0 11 17 2 0 0 7 0 1 1 0 0 8 0 1 6 3 0 0 0 0 1 2 0 0 0 2 0 0 1 1 4 0 2 5 1 1 0 0 0 0 1 0 0 1 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................ATACATACACGCACACATAAGT............................................................. 22 1 17 105.88 1800 1 447 311 253 23 34 18 14 72 26 16 17 14 7 9 104 3 15 15 8 11 4 84 2 2 13 10 6 1 2 3 2 17 11 1 37 10 2 2 16 1 6 12 28 1 4 2 11 1 1 22 3 1 0 3 9 0 0 6 1 4 2 6 0 6 0 0 2 0 3 3 0 4 2 1 2 1 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0
............................................................TGATGTGTGTGTACATGTACA....................................................................................................... 21 0 12 103.50 1242 0 98 104 82 25 88 102 49 16 20 68 312 52 0 15 6 2 22 9 27 3 11 2 18 11 1 2 2 10 3 7 6 0 0 4 0 3 1 1 0 1 1 7 1 0 4 4 2 1 2 0 1 0 5 0 2 0 2 0 1 0 0 2 3 4 0 0 2 2 1 2 1 1 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................GATGTGTGTGTACATGTACATAT.................................................................................................... 23 0 2 91.50 183 0 10 12 8 0 3 5 3 12 8 3 3 0 15 5 1 3 14 11 1 1 3 2 8 17 0 0 0 2 0 1 10 0 1 3 0 0 2 3 0 0 0 0 0 0 0 0 0 4 0 0 0 0 3 0 0 0 2 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................ATACATACACGCACACATAAGACA........................................................... 24 0 15 85.67 1285 0 288 266 216 116 60 63 47 5 30 25 6 20 0 7 6 0 9 4 13 4 2 2 3 0 7 6 4 1 1 0 7 1 2 0 1 5 0 0 2 1 0 1 1 0 3 2 9 1 0 0 1 0 1 0 3 13 0 3 4 0 1 1 0 0 0 0 0 0 0 0 0 1 2 2 1 0 0 1 0 0 1 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................TGATGTGTGTGTACATGTACATA..................................................................................................... 23 0 2 77.00 154 0 30 37 42 0 9 5 0 3 1 3 7 0 0 2 2 0 1 0 0 0 0 1 2 0 0 1 0 1 0 1 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TACATACACGCACACATAAGAC............................................................ 22 0 15 72.07 1081 0 206 213 155 193 40 28 39 4 20 15 1 24 4 5 7 6 3 5 8 4 36 1 6 1 8 8 4 7 0 2 1 0 2 0 1 2 1 0 1 1 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 0 3 1 0 0 2 0 2 0 1 0 0 0 0 0 0 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................GATGTGTGTGTACATGTACAT...................................................................................................... 21 0 13 61.54 800 0 37 22 37 13 30 48 21 42 28 75 20 56 19 13 5 10 45 12 41 1 23 2 37 22 1 1 0 9 0 9 34 0 0 7 3 0 7 5 0 0 0 1 1 9 0 0 0 10 0 1 0 3 5 1 0 0 2 0 0 0 0 6 2 4 0 0 0 0 0 0 3 1 0 3 0 4 0 1 0 3 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TATACATACACGCACACATA................................................................ 20 0 17 59.76 1016 0 61 62 68 62 10 5 10 20 16 4 58 7 0 7 57 2 4 5 8 60 14 37 6 4 8 4 26 6 2 12 4 43 13 3 27 4 1 1 3 35 28 3 13 3 15 10 4 0 2 3 4 3 0 2 3 0 6 3 2 20 4 1 0 3 2 2 12 7 1 4 2 3 3 1 6 0 8 3 0 3 1 0 7 7 2 1 3 0 7 1 1 1 0 2 1 2 0 0 2 3 0 0 1 0 0 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TATACATACACGCACACATAAGT............................................................. 23 1 14 59.21 829 0 197 118 101 92 17 16 6 29 14 5 10 4 2 6 27 0 2 9 0 7 5 28 3 0 2 5 0 1 0 0 1 5 3 0 20 6 2 1 9 2 4 3 6 1 2 1 2 0 0 5 0 5 0 0 11 0 1 5 2 4 1 2 0 2 0 0 1 0 3 0 1 2 1 0 2 0 0 0 1 1 2 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................ATACATACACGCACACATAAGAA............................................................ 23 1 17 58.76 999 0 214 135 128 45 68 44 44 61 10 18 6 14 7 2 7 2 3 2 7 17 1 3 9 1 11 9 4 3 4 10 0 8 5 0 3 4 0 0 4 4 5 10 1 8 1 2 1 3 0 3 0 3 0 11 1 0 2 0 1 2 5 1 0 0 1 2 1 2 0 1 0 0 1 0 2 0 0 2 0 0 0 2 0 0 0 2 0 0 0 0 1 0 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................ATACATACACGCACACATAA............................................................... 20 0 16 57.38 918 0 52 14 22 58 44 41 39 73 9 36 64 21 2 8 25 4 7 6 9 35 0 8 1 3 6 7 38 1 1 10 2 42 9 4 12 0 0 0 2 19 18 10 7 9 8 1 0 0 2 6 0 3 0 17 2 0 1 0 6 10 8 0 0 3 6 3 5 4 0 5 0 1 0 0 6 2 4 0 0 0 0 3 1 4 3 1 2 3 4 0 2 1 0 0 0 0 0 3 1 1 0 0 0 0 0 1 0 1 3 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................ATACATACACGCACACATAAGAT............................................................ 23 1 15 44.33 665 3 103 59 56 43 61 41 34 44 5 26 8 14 2 6 24 1 0 1 8 3 5 6 0 1 6 8 3 1 0 0 3 7 3 0 4 4 0 0 0 2 4 5 6 1 1 4 1 1 0 10 3 1 0 5 5 1 0 1 2 2 2 2 0 3 1 0 1 2 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TATACATACACGCACACATAAGACT........................................................... 25 1 14 36.43 510 0 119 122 85 35 28 27 21 2 12 2 2 7 0 3 3 1 1 1 2 0 6 0 1 0 2 2 0 1 2 0 6 0 3 1 0 0 0 0 2 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 1 6 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TATACATACACGCACACAT................................................................. 19 0 20 34.80 696 0 5 2 4 21 1 1 0 25 16 3 60 2 3 3 87 0 10 10 1 21 6 62 1 1 10 4 20 0 2 6 3 25 7 0 13 2 1 0 4 15 16 1 26 2 9 2 1 0 0 21 1 2 0 2 3 0 3 3 0 11 8 0 0 4 0 1 12 3 7 6 2 1 4 2 1 0 3 2 0 0 0 0 3 0 0 0 2 32 11 0 0 0 0 0 0 0 0 10 1 3 0 0 2 2 0 0 0 0 2 5 0 0 0 0 0 0 0 0 0 1 0 3 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................GATGTGTGTGTACATGTACATA..................................................................................................... 22 0 2 28.00 56 0 10 15 13 0 0 0 0 0 5 1 0 0 1 0 0 2 3 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................TGATGTGTGTGTACATGTAC........................................................................................................ 20 0 12 25.92 311 0 4 7 2 13 18 24 24 15 4 8 102 6 3 2 7 0 1 3 5 1 0 4 4 2 2 2 5 1 0 0 1 0 2 4 2 0 1 1 1 0 2 0 6 1 1 1 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 1 2 0 0 1 0 0 3 0 1 0 1 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TATACATACACGCACACATAAGAA............................................................ 24 1 15 20.80 312 0 56 37 37 58 23 12 15 14 1 6 5 8 1 0 2 1 0 0 0 1 3 1 1 1 0 6 0 2 0 1 0 0 2 0 0 1 0 1 1 0 1 1 0 0 0 0 1 3 0 0 0 0 0 0 1 1 0 0 0 0 0 0 1 1 0 2 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TACATACACGCACACATAAG.............................................................. 20 0 15 20.33 305 0 69 83 61 14 4 4 5 5 2 5 1 6 0 0 2 0 0 0 1 2 2 3 0 3 2 1 0 1 0 2 1 0 2 3 1 0 0 0 1 1 1 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 1 1 0 1 1 1 0 1 0 0 0 0 0 1 0 1 0 2 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TATACATACACGCACACATAAGAT............................................................ 24 1 14 15.50 217 0 50 31 24 2 28 10 9 3 1 11 2 2 2 1 7 4 0 0 0 0 1 1 1 0 0 4 1 0 1 1 0 0 2 0 3 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 1 0 1 0 0 3 0 0 1 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................ACGCACACATAAGA............................................................. 14 0 20 14.10 282 280 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TACATACACGCACACATAAGACT........................................................... 23 1 15 12.80 192 0 31 50 28 17 10 5 7 2 2 5 0 5 0 1 2 0 1 1 5 0 3 2 0 1 0 2 0 0 0 0 0 0 0 2 0 0 0 0 3 0 0 0 1 0 0 1 0 0 1 1 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................GATGTGTGTGTACATGTACA....................................................................................................... 20 0 13 12.77 166 0 8 8 8 0 12 8 13 7 7 17 15 8 6 6 3 0 4 3 6 1 3 1 2 0 0 0 2 2 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 3 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................ATATACATACACGCACACATAAG.............................................................. 23 0 14 12.50 175 0 58 46 35 0 9 4 1 1 1 1 3 1 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 2 0 0 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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....................................................................................................TAGACATACACGCACACATAAGA............................................................. 23 1 14 0.57 8 0 1 2 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................TGATGTGTGTGTACATTTACAT...................................................................................................... 22 1 14 0.57 8 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TATACATACAAGCACACATAAGA............................................................. 23 1 16 0.56 9 1 0 1 2 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................ATACATAGACGCACACATAAGA............................................................. 22 1 16 0.56 9 0 1 1 0 1 1 0 1 0 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................GTTGATGTGTGTGTACATGTAC........................................................................................................ 22 0 11 0.55 6 0 0 0 1 0 1 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

ACTACACAATCTCCAGTAGGACCGTAAGTACACTAACGGGGATACATACACACATACACAACTACACACACATGTACATGTATACACTTATACTATATGTATATGTATGTGCGTGTGTATTCTGTGTATACTCGTGTGTCTGTGTACCCTTACCGTGAGTAGTTAGGTAAACTCACTATTCACT
**********************************************..((((((((((((((.((((((((((..(((((..((((((.........)))))))))))..))))))))))..)))))))))..))))).********************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM361407
brain		 GSM361415
brain		 GSM361398
brain		 GSM361408
brain		 GSM361395
brain		 GSM361402
brain		 GSM361399
brain		 GSM361394
brain		 GSM361430
brain		 SRR206942
brain		 SRR391846
embryo		 SRR391847
embryo		 SRR345196
brain		 SRR345199
brain
.....................................................................................................TATGTATGTGCGTGTGTATTCT............................................................. 22 0 15 20.13 302 88 88 33 15 25 25 13 13 2 0 0 0 0 0
....................................................................................................ATATGTATGTGCGTGTGTATTCT............................................................. 23 0 14 7.07 99 23 23 16 5 13 13 3 3 0 0 0 0 0 0
.....................................................................................................TATGTATGTGCGTGTGTATTC.............................................................. 21 0 15 3.20 48 8 8 5 10 4 4 4 4 1 0 0 0 0 0
....................................................................................................ATATGTATGTGCGTGTGTATTC.............................................................. 22 0 14 2.79 39 4 4 12 4 4 4 3 3 1 0 0 0 0 0
............................................................ACTACACACACATGTACATGTATA.................................................................................................... 24 0 2 2.50 5 1 1 0 1 1 1 0 0 0 0 0 0 0 0
.....................................................................................................TATGTATGTGCGTGTGTATTCTG............................................................ 23 0 15 1.20 18 2 2 4 0 3 3 2 2 0 0 0 0 0 0
.............................................................CTCCACACACATGTACATGTATA.................................................................................................... 23 1 2 1.00 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0
.....................................................................................................TATGTATGTGCGTGTGTATTCTGT........................................................... 24 0 15 0.80 12 2 2 0 0 3 3 1 1 0 0 0 0 0 0
....................................................................................................ATATGTATGTGCGTGTGTATT............................................................... 21 0 14 0.79 11 2 2 0 2 1 1 1 1 1 0 0 0 0 0
............................................................ACTACACACACATGTACATGTA...................................................................................................... 22 0 12 0.75 9 1 1 2 1 1 1 0 0 2 0 0 0 0 0
......................................................................................................ATGTATGTGCGTGTGTATTCT............................................................. 21 0 15 0.60 9 2 2 3 0 0 0 1 1 0 0 0 0 0 0
.............................................................CTACACACACATGTACATGTA...................................................................................................... 21 0 13 0.46 6 0 0 1 3 1 1 0 0 0 0 0 0 0 0
............................................................ACTACACACACATGTACATGTC...................................................................................................... 22 1 14 0.43 6 3 3 0 0 0 0 0 0 0 0 0 0 0 0
............................................................ACTACACACACATGTACATG........................................................................................................ 20 0 12 0.33 4 1 1 0 2 0 0 0 0 0 0 0 0 0 0
............................................................ACTACACACACATGTACATGT....................................................................................................... 21 0 12 0.33 4 1 1 0 2 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TATTTATGTGCGTGTGTATTCT............................................................. 22 1 15 0.33 5 0 0 0 2 0 0 1 1 1 0 0 0 0 0
.....................................................................................................TATTTATGTGCGTGTGTATTC.............................................................. 21 1 15 0.27 4 0 0 0 4 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TATGTATGTGCGTGTGTATTCTGA........................................................... 24 1 15 0.27 4 0 0 1 1 1 1 0 0 0 0 0 0 0 0
.....................................................................................................TATGTATGTGCGTGTGTATT............................................................... 20 0 16 0.25 4 0 0 0 2 0 0 1 1 0 0 0 0 0 0
....................................................................................................ATATGTATGTGCGTGTGTAT................................................................ 20 0 17 0.24 4 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TATGTATGTGCGTGTGTATTCTT............................................................ 23 1 17 0.24 4 1 1 0 0 1 1 0 0 0 0 0 0 0 0
............................................................ACTACACACACAGGTACATGTATAA................................................................................................... 25 2 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................CTACACACACATGTACATG........................................................................................................ 19 0 13 0.15 2 0 0 0 0 0 0 1 1 0 0 0 0 0 0
....................................................................................................ATATGTATGTGCGTGTGTATTCTA............................................................ 24 1 14 0.14 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................ATCTGTATGTGCGTGTGTATTCT............................................................. 23 1 14 0.14 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................ATATGTATTTGCGTGTGTATTC.............................................................. 22 1 14 0.14 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0
....................................................................................................ATATGTATGTGCGTGTGTATCCT............................................................. 23 1 14 0.14 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................ATATGTATTTGCGTGTGTATTCT............................................................. 23 1 14 0.14 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................ATATGTATGTGCGTGTGTATTCTG............................................................ 24 0 14 0.14 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................ATATGTATGTGCGTGTGTATTCTGT........................................................... 25 0 14 0.14 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................ATATGTATGTGCGTGTGTCTTCT............................................................. 23 1 15 0.13 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TATGTAGGTGCGTGTGTATTCT............................................................. 22 1 15 0.13 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................ATGTATGTGCGTGTGTATTCTGA........................................................... 23 1 15 0.13 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0
.....................................................................................................TATGTATGTGCGTGTGTATTCTGC........................................................... 24 1 15 0.13 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TATGTATGTGCGTGTGTATTCTC............................................................ 23 1 15 0.13 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TATGCATGTGCGTGTGTATTCT............................................................. 22 1 15 0.13 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................ATATGTATGTGAGTGTGTATTCT............................................................. 23 1 15 0.13 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0
......................................................................................................ATGTATGTGCGTGTGTATTC.............................................................. 20 0 15 0.13 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTTGTATGTGCGTGTGTATTCT............................................................. 22 1 15 0.13 2 0 0 0 0 0 0 1 1 0 0 0 0 0 0
....................................................................................................ATATGTATGAGCGTGTGTATTCTTT........................................................... 25 2 15 0.13 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TATGTATGCGCGTGTGTATTCC............................................................. 22 2 16 0.13 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TATGTATATGCGTGTGTATTCT............................................................. 22 1 16 0.13 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0
.............................................................CTCCACACACATGTACATGTA...................................................................................................... 21 1 16 0.13 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0
...................................................................................................TATATGTATGTGCGTGTGTATCC.............................................................. 23 1 17 0.12 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TATGTATGTGCGTGTATATTCT............................................................. 22 1 17 0.12 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TCTGTATGTGCGTGTGTATTCT............................................................. 22 1 17 0.12 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0
......................................................................................................ATGTATGTGCGTGTGTATTCTT............................................................ 22 1 17 0.12 2 0 0 0 0 0 0 1 1 0 0 0 0 0 0
.....................................................................................................TATGTCTGTGCGTGTGTATTC.............................................................. 21 1 17 0.12 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0
....................................................................................................GTATGTATGTGCGTGTGTATTCT............................................................. 23 1 17 0.12 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................ATATGTATGTGCGTGTGTATCC.............................................................. 22 1 18 0.11 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................GTGTCTGTGTACCCTTACCGTGAGTAGTT.................... 29 0 10 0.10 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................ATATGTATGTGCGTGTGTA................................................................. 19 0 20 0.10 2 0 0 0 0 0 0 1 1 0 0 0 0 0 0
............................................................ACTACCCACACATGTACATGTA...................................................................................................... 22 1 12 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................AACTACACACACATGTACATGT....................................................................................................... 22 0 12 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................CTACACACACATGTACATGT....................................................................................................... 20 0 13 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................ATATTTATGTGCGTGTGTATTC.............................................................. 22 1 14 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CCGTGGGCAGTTAAGTAAACTCA......... 23 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................TATATGTATGTGCGTGTGTATTC.............................................................. 23 0 14 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................ATATGTATGTGCGCGTGTATTCT............................................................. 23 1 14 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................ACTACACACACATGTACATGA....................................................................................................... 21 1 14 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................ATATTTATGTGCGTGTGTATTCT............................................................. 23 1 14 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CCGTGGGCAGTTAAGTAAACTC.......... 22 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................ATGTATGTGCGTGTGTATTCTG............................................................ 22 0 15 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TATGTATGCGCGTGTGTATTCT............................................................. 22 1 15 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TATGTATGTGAGTGTGTATTCTG............................................................ 23 1 15 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GTATGTGCGTGTGTATTCT............................................................. 19 0 15 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................TACACACACATGTACATGTATAA................................................................................................... 23 1 15 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................ATGTATGTGCGTGTGTATTCTGC........................................................... 23 1 15 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................ATTTATGTGCGTGTGTATTCT............................................................. 21 1 16 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TATGTATTTGCGTGTGTATTC.............................................................. 21 1 16 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................ATTTATGTGCGTGTGTATTC.............................................................. 20 1 17 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................TACACACACATGTACATGTA...................................................................................................... 20 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TATGTTTGTGCGTGTGTATTC.............................................................. 21 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................ATACGTATGTGCGTGTGTATT............................................................... 21 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
............................................................CCTACACACACATGTACATGTAAA.................................................................................................... 24 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................ATACGCACATACACAACT......................................................................................................................... 18 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.............................................................CTCCACACACATGTACATGTC...................................................................................................... 21 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TATTTATTTGCGTGTGTATTC.............................................................. 21 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......ATTCTCCAGTAGGGCCGT............................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
mm10 chr2:10479038-10479221 + mmu-mir-466e TGATGTGTTAGAGGTCATCCTGGCATTCATGTGATTGCCCCtatgtatgtgtgtatgtgttgatgtgtgtgtacatgtacatatgtgaatatgatatacatatacatacacgcacacataagacacatatgagcacacagacacatGGGAATGGCACTCATCAATCCATTTGAGTGATAAGTGA
cavPor3 Unknown ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dipOrd1 Unknown ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
hetGal2 Unknown ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ochPri2 Unknown ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
oryCun2 Unknown ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
rn5 Unknown ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
speTri2 Unknown ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
mm10
TGATGTGTTAGAGGTCATCCTGGCATTCATGTGATTGCCCCtatgtatgtgtgtatgtgttgatgtgtgtgtacatgtacatatgtgaatatgatatacatatacatacacgcacacataagacacatatgagcacacagacacatGGGAATGGCACTCATCAATCCATTTGAGTGATAAGTGASizeHit CountTotal NormTotalSRR042455
blood		SRR042459
blood		SRR042460
blood		SRR069834
blood		SRR073954
blood		SRR073955
blood		SRR525238
Blood		SRR525237
Blood		SRR042456
bone marrow		SRR042457
bone marrow		SRR042461
bone marrow		SRR042462
bone marrow		GSM317181
brain		GSM317182
brain		GSM361394
brain		GSM361395
brain		GSM361398
brain		GSM361399
brain		GSM361402
brain		GSM361407
brain		GSM361408
brain		GSM361415
brain		GSM361430
brain		GSM510444
brain		SRR037904
brain		SRR037905
brain		SRR037906
brain		SRR037907
brain		SRR038741
brain		SRR038744
brain		SRR039610
brain		SRR042477
brain		SRR060845
brain		SRR206939
brain		SRR206940
brain		SRR206941
brain		SRR206942
brain		SRR345196
brain		SRR345197
brain		SRR345198
brain		SRR345199
brain		SRR345200
brain		SRR345201
brain		SRR345202
brain		SRR345203
brain		SRR345204
brain		SRR345205
brain		SRR345206
brain		SRR345207
brain		SRR037919
embryo		SRR037920
embryo		SRR037921
embryo		SRR037922
embryo		SRR037923
embryo		SRR037924
embryo		SRR037925
embryo		SRR037926
embryo		SRR037927
embryo		SRR037928
embryo		SRR037929
embryo		SRR037930
embryo		SRR391845
embryo		SRR391846
embryo		SRR391847
embryo		SRR391848
embryo		SRR391849
embryo		SRR391850
embryo		SRR391851
embryo		SRR391852
embryo		SRR391853
embryo		SRR116846
epididymis		GSM566419
fibroblast		GSM566420
fibroblast		SRR039183
fibroblast		SRR039184
fibroblast		SRR039185
fibroblast		SRR039186
fibroblast		SRR042475
fibroblast		SRR390297
fibroblast		SRR390298
fibroblast		SRR042484
salivary gland		SRR042476
heart		SRR095853
heart		SRR095855BC1
heart		SRR095855BC10
heart		SRR095855BC2
heart		SRR095855BC3
heart		SRR095855BC4
heart		SRR095855BC5
heart		SRR095855BC6
heart		SRR095855BC7
heart		SRR095855BC8
heart		SRR095855BC9
heart		SRR065052
jejunum		SRR065053
jejunum		SRR065054
jejunum		SRR065055
jejunum		SRR065056
jejunum		SRR042480
kidney		SRR040488
liver		SRR042479
liver		SRR065045
liver		SRR065046
liver		SRR065047
liver		SRR065048
liver		SRR065049
liver		SRR065050
liver		SRR077864
liver		SRR077865
liver		SRR077866
liver		SRR042478
lung		SRR042468
lymph		SRR042469
lymph		SRR042470
lymph		SRR042472
lymph		SRR042473
lymph		SRR039152
muscle		SRR039153
muscle		SRR039154
muscle		SRR042483
muscle		SRR014234
ovary		SRR037896
ovary		SRR037897
ovary		SRR037898
ovary		SRR037899
ovary		SRR042486
ovary		SRR042481
pancreas		SRR065058
pancreas		SRR065059
pancreas		SRR042482
skin		SRR042463
spleen		SRR042465
spleen		SRR042466
spleen		SRR042467
spleen		SRR042471
spleen		SRR042487
spleen		SRR059768
spleen		SRR059769
spleen		SRR059770
spleen		SRR059771
spleen		SRR059772
spleen		SRR059773
spleen		GSM475281
testes		GSM509275
testes		GSM509279
testes		SRR014231
testes		SRR014235
testes		SRR014236
testes		SRR028731
testes		SRR037900
testes		SRR037901
testes		SRR037902
testes		SRR037903
testes		SRR042485
testes		SRR051939
testes		SRR051940
testes		SRR069809
testes		SRR069810
testes		SRR069811
testes		SRR248523
testes		SRR248524
testes		SRR248525
testes		SRR248526
testes		SRR248527
testes		SRR363956
testes		SRR363957
testes		SRR363958
testes		SRR363959
testes		SRR363960
testes		SRR363963
testes		SRR363964
testes		SRR553582
brain		SRR553583
cerebellum		SRR553584
heart		SRR553585
kidney		SRR553602
testes		SRR553603
testes		SRR553604
testes		SRR553586
testes		SRR042464
thymus		SRR059765
thymus		SRR059766
thymus		SRR059767
thymus		SRR032476
uterus		SRR032477
uterus
.....................................................................................................ATACATACACGCACACATAAGA.............................................................22154762.137143233436614434380560000000000012032828917182400182711130000001000126686812342141932814698516854121616736256112331199213816111236000118971532743780315318700100000001020101138000000015061623120176800092011040000729332614210252064000754113010735527001321451263632125928754900000006220941013684814338221251293515
....................................................................................................TATACATACACGCACACATAAGA.............................................................23143083.29431661403113711121801200000000000434151347114106914100000000002019385216843753115294241834348761918421173503564704549150056398511175350164036000000000000000000190000000202044347150004201110100158140541181129000147111000425222107214149217130411262330000000207306111193816104166846
.....................................................................................................ATACATACACGCACACATAAGAC............................................................23151371.67205750131038322401010000000000120420271000313100000000000202011522316722323335655979915115967241130162248110059254814317407834000000000000000000080000000000010182800010000010000330931455100047111000035100112308810220412880000000711212104593941442
.....................................................................................................ATACATACACGCACACATAAG..............................................................21151047.001570525001911611202920000000000391810379700313630020001000012131654212611122121168225269154120543075353826163711303021612512314010020000001000001018000000020306460102800010000040010017316701024718000206110000012200005772810100602588159000000016401041415242575831145
....................................................................................................TATACATACACGCACACATAAG..............................................................22141033.64144712123078753150230000000000043610151817700171228000000300001320375291018923133645412819622396752526883869249237104258561112106413222002000000000100110210000000003089361643000600201020104282210105141717270001111100001111440071301447952309114000000001733017661320102862117
......................................................................................................TACATACACGCACACATAAGA.............................................................2115294.93442401001610000110000000000010110000002002000000000000174132826311132192850353314429432326000356112442550200000000000000000010000000000022614000000000000000023811260001400000002000006006637110000000380002250110400
....................................................................................................TATACATACACGCACACATAA...............................................................2114180.5025271800121191110040000000000092420031210221000000300022163117421810337507741172437955030014141216135911600000000000030003212000000000009134418630007000001311035834111021441337000771000001111100211112875141600000001401010121511312011
............................................................TGATGTGTGTGTACATGTACAT......................................................................................................2212174.0820890101212102000000000000002304512420052270000000030001336692326461072325258518889489128141676614791111109126199000010000000001000001000000000000120000000001000000100100639000510000002314100020446252116102900000001000000002141302
....................................................................................................TATACATACACGCACACATAAGAC............................................................2414154.6421650310261000000000000000000003001000000000000000000012500310205506510111011143445525341200299103290000000000000000000000000000000010100000000000000000000010000001004000000000062124203945000000003100002050100
.....................................................................................................ATACATACACGCACACATAAGACT...........................................................2415153.0022950111041021010000000000002022022000100000000000000015500310123087841444131254644393401200131020602160100000000000000000020000000000024523000000000000001220812130001300220000020000109213178985000000035000881011762012
............................................................TGATGTGTGTGTACATGTACATAT....................................................................................................242131.00262000020000000000000000001011000100011000000000000018171681332711451814103112232101000200000000000000000000000100000000000000000000000000000000000010000060050001121000200911159000000000000011042000
.....................................................................................................ATACATACACGCACACATAAGT.............................................................2217105.8818000210403410000000000000030000032000410000000100000112023721120141834161483114472531600101113602310001000000000010000300000000001026417000000000000000160113282237000720000000110000171269152152600000001200011610410498422
............................................................TGATGTGTGTGTACATGTACA.......................................................................................................2112103.501242041011100100000000000000700201100101010000000000001411312011101854910288685227104988200020120250000000000000000000010000000000012200000000000000000112321000001601000000000003127415226920000000023001203462200
.............................................................GATGTGTGTGTACATGTACATAT....................................................................................................23291.501830000300000000000000000010020000000000000000000000031722315342833533011210800001000000000001000000000000000000000000000000000000000000000001000000012000000000000030051410118000000000000010010200
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cavPor3
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dipOrd1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
hetGal2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
ochPri2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
oryCun2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM1528820
Adult_testes		GSM1528821
Adult_testes_Mili_IP
No Reads
rn5
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM1528817
Adult_testes		GSM1528818
Adult_testes_Mili_IP		GSM1528819
10dpp_testes
No Reads
speTri2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads

Generated: 04/30/2015 at 10:02 PM