ID:

mmu-mir-376a

 Coordinate:

chr12:109723781-109723848 +

 Confidence:

Known

 Type:

Unknown

 [View on miRBase]
[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-25.0 -24.7 -24.7

Sense Strand Reads

GACACAAGCACAAGCTCACAGCATCCTGGATCGAGTTGTTCTTTGATATTTAAAAGGTAGATTCTCCTTCTATGAGTACAATATTAATGACTAATCGTAGAGGAAAATCCACGTTTTCAGTATCAAATGCTGCTTGGGAAACCACCGAGGACATGACATCTTCACCGA
*****************************************(((((((((.((((.((.((((.((((.((((((...................)))))))))).)))).)).)))).)))))))))..*************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR391848
embryo		 SRR039184
fibroblast		 SRR039186
fibroblast		 SRR039185
fibroblast		 SRR391845
embryo		 SRR039183
fibroblast		 SRR391847
embryo		 SRR345203
brain		 SRR391846
embryo		 SRR391849
embryo		 GSM510444
brain		 SRR345201
brain		 SRR391850
embryo		 SRR345197
brain		 SRR390298
fibroblast		 SRR345199
brain		 SRR040488
liver		 SRR037921
embryo		 SRR345198
brain		 SRR390297
fibroblast		 SRR037920
embryo		 SRR345206
brain		 SRR345200
brain		 SRR345202
brain		 SRR038744
brain		 SRR037906
brain		 SRR206942
brain		 SRR206940
brain		 SRR391852
embryo		 SRR553582
brain		 SRR037905
brain		 SRR345204
brain		 SRR391853
embryo		 SRR206939
brain		 SRR391851
embryo		 SRR345207
brain		 SRR206941
brain		 SRR039610
brain		 SRR038741
brain		 SRR037922
embryo		 SRR345196
brain		 SRR345205
brain		 SRR553602
sertoli_cells		 SRR037907
brain		 SRR042477
brain		 SRR037919
embryo		 SRR1509750
spermatogonia		 SRR248526
Thy1-_somatic_testes_cells		 SRR037904
brain		 SRR042475
fibroblast		 SRR037925
embryo		 SRR1509751
foetal_primordial_germ_cells		 SRR060845
brain		 SRR037924
embryo		 SRR077866
liver		 SRR248525
Thy1-_somatic_testes_cells		 SRR095853
heart		 GSM475281
testes		 SRR014234
ovary		 SRR037929
embryo		 SRR248524
Thy1+_spermatogonia		 SRR042471
spleen		 SRR042462
bone marrow		 SRR037928
embryo		 SRR248523
Thy1+_spermatogonia		 SRR037926
embryo		 SRR553584
heart		 SRR037923
embryo		 SRR077865
liver		 SRR1509749
zygote		 SRR032477
uterus		 SRR069809
Type_A_spermatogonia		 SRR032476
uterus		 SRR042481
pancreas		 SRR037927
embryo		 SRR1509747
oocyte		 SRR051940
testes		 SRR037930
embryo		 SRR553583
cerebellum		 SRR042463
spleen		 SRR037902
testes		 SRR077864
liver		 SRR037897
ovary		 SRR037901
testes		 SRR116846
epididymis		 SRR042484
salivary gland		 SRR042483
muscle		 SRR065050
liver		 SRR037898
ovary		 SRR069810
pachytene_spermatocytes		 SRR042486
ovary		 SRR095855BC7
heart		 SRR059768
spleen		 SRR073955
blood		 SRR065046
liver		 SRR248527
spermatogonia		 SRR014231
testes		 SRR037903
testes		 SRR065058
pancreas		 SRR065059
pancreas		 SRR553585
kidney		 SRR037899
ovary		 SRR065045
liver		 SRR069811
round_spermatid		 SRR059770
spleen		 SRR065047
liver		 SRR073954
blood		 SRR095855BC1
heart		 SRR095855BC2
heart		 SRR1509748
spermatozoa		 GSM509279
testes		 SRR037900
testes		 SRR065048
liver		 GSM509275
testes		 SRR042456
bone marrow		 SRR042478
lung		 SRR553604
spermatocytes		 SRR095855BC5
heart		 SRR042482
skin		 SRR065049
liver		 SRR042479
liver		 SRR042485
testes		 SRR069834
blood		 GSM317181
brain		 SRR042476
heart		 SRR095855BC10
heart		 SRR095855BC3
heart		 GSM317182
brain		 SRR042480
kidney		 SRR065053
jejunum		 SRR095855BC8
heart		 SRR1647948
Dgcr8_cKO_leptotene_zygotene_spermatocytes		 SRR553603
spermatids		 GSM566419
fibroblast		 SRR039154
muscle		 SRR042473
lymph		 SRR059769
spleen		 SRR095855BC6
heart		 SRR1647947
Dgcr8_WT_leptotene_zygotene_spermatocytes		 SRR553586
testes		 GSM566420
fibroblast		 SRR039152
muscle		 SRR042457
bone marrow		 SRR042461
bone marrow		 SRR042466
spleen		 SRR065052
jejunum		 SRR1647949
Dicer_WT_leptotene_zygotene_spermatocytes		 SRR1647950
Dicer_cKO_leptotene_zygotene_spermatocytes		 SRR525238
Blood
.............................................................................................ATCGTAGAGGAAAATCCACGT...................................................... 21 0 1 418695.00 418695 50599 31136 29694 28822 4772 19538 3918 21064 4007 19854 18031 16815 16655 15303 17722 12485 7617 9908 8464 7731 7411 8093 4492 6569 1564 5924 1464 1125 1601 898 4474 4502 1613 970 1276 4134 766 907 920 2526 793 1645 132 1371 1432 1192 0 291 938 893 564 0 612 453 364 120 0 381 159 267 79 20 238 198 34 99 19 92 64 0 106 60 74 72 61 0 58 38 3 41 29 24 26 25 0 2 2 28 22 17 18 7 15 8 11 3 1 8 10 9 3 8 9 6 4 8 2 3 1 0 1 6 6 1 6 5 3 0 1 6 2 4 0 1 4 0 2 0 2 2 1 0 0 1 0 0 0 0 1 0 1 0 1 0 0 1 0 0 1
.............................................................................................ATCGTAGAGGAAAATCCACGTT..................................................... 22 0 1 83346.00 83346 6779 8324 10261 9454 711 7421 596 2067 594 2605 3245 442 2543 445 2118 27 1911 1786 35 1330 1218 292 0 365 2354 1054 1905 1790 164 1275 718 412 153 1514 145 326 994 1239 1247 435 44 183 131 211 195 210 0 272 169 72 123 0 93 103 319 169 0 38 115 52 112 24 23 38 33 20 21 24 49 0 8 6 12 6 18 0 8 13 5 5 6 19 10 7 3 5 1 1 3 5 2 12 3 3 1 2 4 0 2 1 2 0 1 1 5 0 2 2 2 0 1 0 1 1 1 1 2 1 3 0 2 0 0 1 0 1 0 0 0 1 2 0 2 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0
.............................................................................................ATCGTAGAGGAAAATCCA......................................................... 18 0 1 64462.00 64462 385 306 157 211 24486 163 20106 140 16956 324 14 55 113 104 0 24 20 14 60 0 5 13 70 50 9 1 4 0 65 4 0 25 29 0 25 47 0 12 6 6 67 73 0 1 0 0 0 5 2 15 0 0 24 1 0 5 0 0 2 0 4 193 1 0 0 0 0 0 0 0 0 13 0 1 0 0 1 0 0 0 0 0 0 0 0 19 19 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................ATCGTAGAGGAAAATCCACG....................................................... 20 0 1 25184.00 25184 2520 2041 1647 1769 416 1405 383 637 349 1018 545 836 689 671 1003 686 713 182 1776 231 102 403 1066 419 77 153 32 90 317 28 80 242 324 37 333 203 18 40 37 60 1030 106 24 41 20 18 0 44 26 31 14 0 38 8 30 4 0 21 24 2 14 11 6 7 0 2 5 11 6 0 8 11 4 5 2 0 2 2 0 4 0 3 2 0 0 0 0 2 0 5 3 0 1 0 0 0 0 0 1 0 1 1 0 0 1 0 0 0 1 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................ATCGTAGAGGAAAATCCAC........................................................ 19 0 1 24445.00 24445 353 390 241 316 9608 241 5471 269 4730 272 61 265 81 341 0 83 58 45 144 10 52 47 137 116 26 13 12 17 83 38 17 73 34 7 53 62 10 19 15 15 316 32 0 4 0 7 0 18 2 25 0 0 20 5 0 5 0 0 2 1 3 114 3 0 3 0 1 1 0 0 3 21 1 1 0 0 1 0 0 0 0 0 0 0 0 12 10 0 0 4 0 0 0 0 0 0 0 0 1 0 0 0 0 3 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................ATCGTAGAGGAAAATCCACGTA..................................................... 22 1 1 19498.00 19498 2247 2146 2140 2739 184 2124 132 158 154 896 269 59 927 68 1 2 2023 566 12 203 318 41 0 17 59 82 169 158 134 59 38 26 163 149 108 24 102 42 33 152 0 8 10 18 15 79 0 86 11 15 29 0 8 24 33 33 0 27 57 16 11 5 6 3 11 1 1 7 6 0 2 1 1 2 2 0 8 4 0 2 5 4 3 2 0 0 0 0 0 0 2 2 0 1 1 0 2 0 0 0 0 1 0 0 0 0 0 0 3 0 0 1 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................GTAGATTCTCCTTCTATGAGT........................................................................................... 21 0 1 13652.00 13652 26 79 70 78 58 51 51 0 60 9 137 0 8 0 0 0 193 20 0 31 26 0 0 1 1372 39 2160 1858 64 1009 26 0 69 1693 65 0 1727 866 828 10 0 0 309 15 0 5 0 255 2 0 7 0 0 13 0 155 0 7 2 5 63 0 0 2 60 1 20 3 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 1 18 0 0 0 0 0 0 0 0 0 0 5 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 1 1 1 0 0 0 2 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0
.......................................................GGTAGATTCTCCTTCTATGAGT........................................................................................... 22 0 1 10474.00 10474 125 55 56 89 181 60 173 7 231 53 503 7 38 6 1416 0 248 187 0 539 169 1 0 2 596 154 233 134 1311 107 99 7 1176 144 1202 4 150 329 245 68 0 10 75 33 0 24 0 30 27 3 26 0 0 20 10 19 0 8 1 12 14 1 0 7 4 4 2 2 4 0 0 1 1 0 5 0 0 1 3 0 5 0 1 3 3 0 0 0 0 0 0 0 0 4 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................GTAGAGGAAAATCCACGT...................................................... 18 0 1 9902.00 9902 899 1546 1098 1049 6 833 10 150 3 181 580 115 152 92 98 924 61 356 67 21 194 133 40 66 92 180 18 50 5 11 98 29 2 27 0 35 29 88 70 104 53 17 24 37 0 51 0 21 27 16 37 0 4 24 0 3 0 22 0 10 7 1 3 3 1 12 0 1 0 0 1 0 0 1 1 0 0 1 1 4 3 0 0 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................ATCGTAGAGGAAAATCCACGC...................................................... 21 1 1 6309.00 6309 20 264 207 285 13 207 9 177 23 16 315 1004 7 162 8 697 32 58 317 10 15 74 420 86 45 97 313 196 4 416 63 47 3 167 3 47 172 50 27 9 9 22 34 25 10 6 0 11 17 3 5 0 2 3 2 5 0 0 29 3 4 0 0 0 4 3 11 0 0 0 0 0 1 0 1 0 0 0 9 0 1 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................GTAGATTCTCCTTCTATGAGTA.......................................................................................... 22 0 1 6122.00 6122 32 82 79 75 31 65 66 0 36 9 91 0 6 0 0 0 46 72 0 50 50 0 0 0 281 19 287 416 905 242 19 0 774 318 816 0 242 132 153 16 0 0 273 10 0 8 0 153 2 1 29 0 0 30 0 72 0 1 3 4 36 0 0 3 31 7 17 8 0 1 0 0 0 0 2 0 0 0 8 0 1 0 0 1 6 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................ATCGTAGAGGAAAATCCACGTTT.................................................... 23 0 1 5883.00 5883 1230 349 390 404 275 323 185 236 205 681 136 0 451 0 0 0 221 104 2 21 68 16 0 10 29 61 13 8 16 7 39 55 24 9 22 43 7 15 12 28 7 24 4 7 25 12 0 0 3 17 8 0 8 2 21 3 0 6 1 2 0 2 5 2 0 0 0 2 3 0 1 2 2 1 0 0 3 0 0 0 0 2 0 0 0 2 1 1 0 0 0 1 0 1 3 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................GGTAGATTCTCCTTCTATGAGTA.......................................................................................... 23 0 1 5172.00 5172 46 44 26 50 75 31 108 0 78 11 32 0 12 0 0 0 24 65 0 209 45 0 0 0 26 13 11 18 1415 8 15 0 1233 8 1432 0 9 14 19 10 0 0 5 3 0 10 0 4 0 1 18 0 0 16 2 2 0 2 1 4 0 0 2 5 0 1 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................GTAGATTCTCCTTCTATGAGTAA......................................................................................... 23 1 1 5155.00 5155 2 5 7 6 9 6 12 0 3 3 68 0 2 0 0 0 19 1 0 3 10 0 0 0 413 16 407 504 80 1336 22 0 63 302 66 0 298 226 255 1 0 0 759 6 0 2 0 110 3 0 2 0 0 2 0 37 0 3 0 0 11 0 0 0 14 2 35 0 0 0 0 0 0 0 1 0 0 0 14 0 0 0 0 0 4 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................ATCGTAGAGGAAAATCCACGTTA.................................................... 23 1 1 4183.00 4183 730 380 407 498 109 366 86 92 82 393 39 0 292 0 0 0 388 61 0 0 33 2 0 3 6 15 3 2 18 3 5 18 14 2 9 9 2 4 4 14 1 4 1 3 15 8 0 1 5 10 2 0 5 0 8 1 0 10 0 1 0 6 1 1 0 0 0 1 0 0 3 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................ATCGTAGAGGAAAATCCACGTAA.................................................... 23 2 1 3615.00 3615 637 219 208 252 111 192 88 312 95 488 20 5 241 11 0 11 384 41 18 0 23 39 0 27 1 5 1 1 18 0 5 19 13 2 10 27 0 0 1 17 0 14 0 0 15 3 0 0 2 14 1 0 3 2 0 0 0 2 0 2 0 3 5 1 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................ATCGGAGAGGAAAATCCACGT...................................................... 21 1 1 3572.00 3572 6 5 4 4 3 4 2 722 6 1 23 414 2 503 2 328 19 41 323 0 32 68 309 251 0 39 5 2 1 2 20 137 0 5 0 163 0 0 1 12 4 58 0 6 12 1 0 0 0 2 3 0 2 8 2 0 0 0 0 3 0 0 4 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................ATCGAAGAGGAAAATCCACGT...................................................... 21 1 1 3018.00 3018 10 15 22 22 4 19 2 243 6 5 2 446 2 814 4 307 1 12 287 1 143 17 315 59 0 10 4 1 1 0 86 40 0 0 0 36 1 0 0 16 5 12 0 6 0 0 0 0 0 0 2 0 2 20 0 0 0 1 0 0 0 0 0 9 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................AATCGTAGAGGAAAATCCACGT...................................................... 22 0 1 2692.00 2692 184 376 403 375 47 261 24 71 26 90 125 16 59 10 0 0 80 94 0 30 69 23 1 15 10 54 6 10 16 6 33 10 21 3 15 6 5 7 9 27 0 3 2 11 2 15 0 1 6 9 0 0 3 0 1 3 0 1 0 1 1 0 3 3 1 0 0 0 0 0 1 0 0 0 0 0 1 2 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................GTAGAGGAAAATCCACGTT..................................................... 19 0 1 2356.00 2356 115 389 414 284 1 312 1 22 0 12 86 0 20 0 0 1 11 52 0 1 42 10 0 7 119 28 25 40 0 18 16 4 0 22 0 6 26 88 88 26 4 3 9 6 1 7 0 10 2 0 3 0 0 1 0 6 0 1 0 2 6 2 0 1 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................ATCGTAGAGGAAAATCCCCGT...................................................... 21 1 1 2054.00 2054 10 16 10 12 0 27 1 480 27 3 75 62 4 54 4 54 7 45 28 34 56 340 21 228 0 24 1 0 0 0 51 100 2 2 1 162 0 1 0 11 4 43 0 13 1 0 0 0 2 2 0 0 6 6 1 1 0 1 9 0 0 0 3 6 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................ATCGTAGAGGAAAATCCACGA...................................................... 21 1 1 1748.00 1748 54 28 33 42 1 21 1 62 8 12 47 466 26 75 2 262 31 20 134 2 9 21 226 23 1 14 2 0 6 1 7 24 2 2 6 10 1 1 0 9 2 5 0 12 0 6 0 1 4 3 2 0 3 3 3 0 0 1 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................ATCGCAGAGGAAAATCCACGT...................................................... 21 1 1 1639.00 1639 22 48 34 45 9 37 6 166 9 5 19 195 6 289 9 169 26 24 133 4 27 16 144 52 1 13 0 2 2 0 17 21 1 0 1 19 1 1 0 10 6 19 0 4 1 1 0 2 0 0 4 0 2 3 1 0 0 0 1 5 0 0 0 1 0 3 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................ATCGTAGAGAAAAATCCACGT...................................................... 21 1 1 1515.00 1515 173 20 15 22 9 12 8 40 8 65 13 185 79 269 4 160 21 9 136 20 13 17 108 12 1 9 1 0 8 0 10 8 6 0 4 8 0 0 0 16 0 3 0 12 1 2 0 0 0 1 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................ACCGTAGAGGAAAATCCACGT...................................................... 21 1 1 1382.00 1382 10 42 29 38 20 25 2 52 0 6 5 194 3 365 3 202 27 8 173 0 16 4 103 11 1 2 1 1 0 0 5 5 0 3 0 6 1 0 0 5 0 2 0 2 2 1 0 0 2 0 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................ATCGTAGAGGAAAATCC.......................................................... 17 0 1 1306.00 1306 78 0 0 0 323 0 307 77 183 27 0 31 25 39 0 12 0 0 13 0 0 6 53 17 10 0 3 1 2 8 0 11 0 2 7 17 6 6 3 0 19 8 6 0 0 0 0 1 0 0 0 0 2 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................GGTGGATTCTCCTTCTATGAGT........................................................................................... 22 1 1 1289.00 1289 0 1 0 2 0 0 0 0 1 0 203 0 0 0 1 0 0 0 0 2 1 0 0 0 351 52 126 45 0 41 53 2 0 46 0 3 62 136 116 0 0 0 1 18 0 0 0 0 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................ATCGTAGAGGAGAATCCACGT...................................................... 21 1 1 1237.00 1237 10 35 36 30 3 33 5 128 2 2 145 121 1 112 1 32 23 5 66 1 7 105 27 42 12 51 10 6 0 7 37 24 1 8 0 25 9 8 3 4 17 15 0 11 7 0 0 0 7 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................ATCGTAGAGGAAAATCCACTT...................................................... 21 1 1 1187.00 1187 94 29 23 23 9 13 14 100 6 41 27 111 33 121 3 84 21 25 64 28 15 26 36 17 1 18 1 2 12 13 18 26 1 4 5 15 2 0 0 5 2 7 0 1 42 1 0 0 1 0 1 0 2 2 0 0 0 0 2 2 0 1 23 2 0 0 1 0 0 0 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................ATCGTAGAGGAAAACCCACGT...................................................... 21 1 1 1127.00 1127 14 44 19 28 4 28 2 60 7 6 16 275 3 45 0 200 27 13 124 6 34 12 85 10 0 10 1 1 0 1 26 4 0 0 1 2 1 1 1 2 0 5 0 2 0 2 0 0 1 0 2 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................GTAGATTCTCCTTCTATGAGTAC......................................................................................... 23 0 1 1079.00 1079 3 8 10 15 5 11 12 0 19 1 24 0 2 0 0 0 11 9 0 7 5 0 0 0 129 8 89 83 20 146 5 0 12 44 11 0 72 55 64 4 0 0 119 4 0 2 0 24 0 0 3 0 0 0 0 6 0 0 0 1 5 0 0 0 8 1 15 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................ATCGTAGAGGAAAATCCACGG...................................................... 21 1 1 1063.00 1063 3 9 4 17 2 1 7 114 6 6 20 146 2 140 1 112 18 14 67 0 1 38 146 49 1 13 0 1 0 2 2 28 0 0 0 38 0 0 0 4 4 21 0 1 5 0 0 0 0 2 6 0 0 1 0 0 0 1 1 5 0 0 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................ATCGTAGAGCAAAATCCACGT...................................................... 21 1 1 1055.00 1055 9 20 5 20 2 27 1 48 3 4 5 161 3 245 2 152 11 5 180 1 5 2 99 9 0 5 0 1 1 0 2 0 0 0 0 5 0 0 0 8 0 1 0 4 0 7 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................ATCGTAGAGGAAAATCAACGT...................................................... 21 1 1 950.00 950 17 24 13 8 0 14 0 71 1 14 20 133 6 115 6 50 6 32 55 33 56 39 49 27 1 9 0 0 0 0 36 18 0 0 0 16 2 1 3 19 1 6 0 18 9 3 0 0 1 6 2 0 0 6 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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...............................................................................AATATTAATGACTAATCGTAGAG.................................................................. 23 0 1 53.00 53 0 1 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 1 2 2 2 15 0 0 2 2 2 0 2 2 0 0 0 0 10 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................ATCGGAGAGGAAAACCCACGT...................................................... 21 2 1 52.00 52 0 0 0 0 0 0 0 9 1 0 1 8 0 5 0 7 0 1 4 0 1 0 13 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................CGTAGAGGAAAATCCACGTT..................................................... 20 0 1 52.00 52 3 2 3 0 1 4 0 1 1 2 5 0 1 1 0 0 3 2 0 0 4 0 0 0 9 0 0 0 0 0 2 0 0 0 0 0 0 1 2 4 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................ATCGTAGCGGAAAATCCACG....................................................... 20 1 1 52.00 52 0 0 0 0 1 0 0 0 1 0 0 7 0 8 0 0 0 1 16 0 0 1 11 2 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................ATCGTAGACGAAAATCCACGTT..................................................... 22 1 1 51.00 51 4 0 1 2 0 6 1 6 0 1 1 3 0 0 0 0 3 1 0 0 1 1 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 13 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CTGTGTTCGTGTTCGAGTGTCGTAGGACCTAGCTCAACAAGAAACTATAAATTTTCCATCTAAGAGGAAGATACTCATGTTATAATTACTGATTAGCATCTCCTTTTAGGTGCAAAAGTCATAGTTTACGACGAACCCTTTGGTGGCTCCTGTACTGTAGAAGTGGCT
***************************************(((((((((.((((.((.((((.((((.((((((...................)))))))))).)))).)).)))).)))))))))..***************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM361408
brain		 GSM361430
brain		 GSM361415
brain		 GSM361407
brain		 GSM361395
brain		 GSM361402
brain		 GSM361394
brain		 GSM361399
brain		 GSM361398
brain		 SRR069809
Type_A_spermatogonia		 SRR345201
brain		 SRR039154
muscle		 SRR073954
blood		 SRR345197
brain		 SRR345199
brain		 SRR391852
embryo
.............................................................................................TAGCATCTCCTTTTAGGTGCA...................................................... 21 0 1 59.00 59 31 14 5 5 2 2 0 0 0 0 0 0 0 0 0 0
.............................................................................................TAGCATCTCCTTTTAGGTGCAA..................................................... 22 0 1 33.00 33 21 4 2 2 1 1 1 1 0 0 0 0 0 0 0 0
.............................................................................................TAGCATCTCCTTTTAGGTGC....................................................... 20 0 1 15.00 15 10 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TAGCATCTCCTTTTAGGTGCC...................................................... 21 1 1 14.00 14 0 0 7 7 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TACCATCTCCTTTTAGGTGCAA..................................................... 22 1 1 8.00 8 5 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TCGCATCTCCTTTTAGGTGCAA..................................................... 22 1 1 5.00 5 2 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................TATCATCTCCTTTTAGGTGCA...................................................... 21 1 1 4.00 4 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................ATCTAAGAGGAAGATACTCATG......................................................................................... 22 0 1 3.00 3 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CCACCTAAGAGGAAGATACTCA........................................................................................... 22 1 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................ATCTAAGAGGAAGATACTCATA......................................................................................... 22 1 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TTAGCATCTCCTTTTAGGTGC....................................................... 21 0 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TCGCATCTCCTTTTAGGTGCC...................................................... 21 2 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................CATCTAAGAGGAAGATACTCA........................................................................................... 21 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TAGCATCTCCTTTTAGGTGCAT..................................................... 22 1 1 2.00 2 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0
.............................................................................................TAGCATCTCCTTTTAGGTGCAC..................................................... 22 1 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TAGCATCTCCTTTTAGGTGCATCT................................................... 24 3 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TCGCATCTCCTTTTAGGTGCAC..................................................... 22 2 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TTGCATCTCCTTTTTGGTGCAA..................................................... 22 2 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TCGCATCTCCTTTTAGGTGCA...................................................... 21 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TACCATCTCTTTTTAGGTGCAA..................................................... 22 2 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TTGCATCTCTTTTTAGGTGCAA..................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TATCATCTCCTTTTAGGTGCAT..................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TAGCTTCTCCTTTTAGGTGCAA..................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TAGCATCTCCTTTTAGGTG........................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TAGAATCTCCTTTTAGGTGCAC..................................................... 22 2 2 1.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TTGCATCTCCTTTTAGGTGC....................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................TCCATCTAAGAGGAAGATACTCA........................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................CATCTAAGAGGAAGATACTCAT.......................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................CGTAGGACCTAGCTCAACAAGAAACT.......................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................CCATCTAAGAGGAAGATACTCA........................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................TTCCACCTAAGAGGAAGATACTCAT.......................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TAACATCTCCTTTTAGGTGCA...................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TAGCATCTCCTTTTAGGT......................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TAGTATCTCCTTTTAGGTGCAA..................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................CATCTACGAGGAAGATACTCA........................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TCGCATCTCCTTTTAGGTGC....................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TAGAATCTCCTTTTAGGTGCAA..................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................CACCTAAGAGGAAGATACTCAT.......................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TAGCATCTCCTTTTAGGTGCGA..................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................TAGTATCTCCTTTTAGGTGCA...................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TAGCATCTCCTTTTAGGTGCAAT.................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................CATCACAGAGGAAGATACTCAT.......................................................................................... 22 2 2 1.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TAGCATCTCCTTTCAGGTGCAA..................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TATCATCTCCTTTTAGGTGCAA..................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................AAGCATCTCCTTTTAGGTGCA...................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TAGCATCTCCTTTTAGGTGCG...................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TAGCATCTCCTTTTAGGTACAA..................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................CTTAGGTGCAAAAGTAATAGT........................................... 21 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................TACCATCTCCTTTTAGGTGCG...................................................... 21 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................CACCTAACAGGAAGATACTCA........................................................................................... 21 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................AATTTTCCATCCAAGAGGACCAT................................................................................................ 23 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................TAGCATCTCCTTTTAGA.......................................................... 17 1 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................TGTAGAAGTGGC. 12 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.........................................................................................................................................CATGCGTGGCTCCTGTACTG........... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.TGTGTTCGTGTTCGCTTGTGGT................................................................................................................................................. 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.....................................................................................................................................AGCCCTTTGGTGGCCCCT................. 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................................................................ATAGTTTACGACGA.................................. 14 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
mm10 chr12:109723731-109723898 + mmu-mir-376a GACACAAGCAC------------------------------AAGCTCACAGCATCCTGGATCGAGTTGTTCTTTGATATTTAAAAGGTAGATTCTCCTTCTATGAGTACAATATTAATGACTAATCGTAGAGGAAAATCCACGTTTTCAGTATCAAATGCTGCTTGGGAAACCACCGAGGACATGACATCTTCACCGA
cavPor3 scaffold_111:1096029-1096194 + ACCTCAAGCAC------------------------------AGCTTCACGTCTTCCTGGATGAAGTCATTCTTTGGTATTTAAAAGGTAGATTCTCCTTCTATGAGTACATTATTTATGATTAATCATAGAGGAAAATCCACGTTTTCAGTATCAAATGCGGCTTTGGAAACTTCTGAAGA--AGACATCACCATGGA
dipOrd1 scaffold_11516:19497-19663 + A-GTCAAGCACCGTTTTGTAGTTCAGGGTTTTTGTGTGTGT--GTTTGTGTGTCCC--CATGAAGCTCTTCTTTGGTATTTAAAAGGTAGATTCTCCTTCTATGAGTACATTATTTATGATTAATCATAGAGGAAAATCCACATTTTCAGTATCAAATGCTGCTTTGGAAAC--------------------------
hetGal2 Unknown ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ochPri2 scaffold_89963:3880-4045 + CGCTGGAGCAC------------------------------AGG-TCGCCTTTCCTTGGATGGAGCCA-TCTTTGGTATTTAAAAGGTAGATTCTCCTTCTATGAGTACATTGGTTATGATTAATCATAGAGGAAAATCCACGTTTTCAGTATCAAATGCCACTATGAAAGCCTGCGAGGACGCCGCGTCGCCACGGA
oryCun2 chrUn0352:133791-133956 + AGCTGGAACAC------------------------------AGG-TCGCCTTTTCCCGGATGGAACCA-CCTTTGGTATTTAAAAGGTAGATTCTCCTTCTATGAGTACATTATTTATGATTAATCATAGAGGAAAATCCACGTTTTCAGTATCAAATGCGACTGGGAAAGACTCCGCGGATGCGACGTCGCCACAGA
rn5 chr6:143035919-143036086 + rno-mir-376a GACGCAAGCAC------------------------------AAGTTCGAGGCCTCCTGGATCGAGTTGTTCTTTGATATTTAAAAGGTAGATTCTCCTTCTATGAGTACAATATTAATGACTAATCGTAGAGGAAAATCCACGTTTTCAGTATCAAATGCTGCTTGGGAAACCACCGAGGACAAGACGTCATCATGGA
speTri2 JH393414:4786869-4787034 + GACACAAGCGC------------------------------AGATTCACGTTTTCCGGGATGCAATCTTTCTTTGGTATTTAAAAGGTAGATTCTCCTTCTATGAGTACATTATTTATGATTAATCATAGAGGAAAATCCACGTTTTCAGTATCAAATGCTGCTTG-GAAACCTCCGTCGGTGGGAAG-GGCCGCAGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
mm10
GACACAAGCAC------------------------------AAGCTCACAGCATCCTGGATCGAGTTGTTCTTTGATATTTAAAAGGTAGATTCTCCTTCTATGAGTACAATATTAATGACTAATCGTAGAGGAAAATCCACGTTTTCAGTATCAAATGCTGCTTGGGAAACCACCGAGGACATGACATCTTCACCGASizeHit CountTotal NormTotalSRR042455
blood		SRR042459
blood		SRR042460
blood		SRR069834
blood		SRR073954
blood		SRR073955
blood		SRR525238
Blood		SRR525237
Blood		SRR042456
bone marrow		SRR042457
bone marrow		SRR042461
bone marrow		SRR042462
bone marrow		GSM317181
brain		GSM317182
brain		GSM361394
brain		GSM361395
brain		GSM361398
brain		GSM361399
brain		GSM361402
brain		GSM361407
brain		GSM361408
brain		GSM361415
brain		GSM361430
brain		GSM510444
brain		SRR037904
brain		SRR037905
brain		SRR037906
brain		SRR037907
brain		SRR038741
brain		SRR038744
brain		SRR039610
brain		SRR042477
brain		SRR060845
brain		SRR206939
brain		SRR206940
brain		SRR206941
brain		SRR206942
brain		SRR345196
brain		SRR345197
brain		SRR345198
brain		SRR345199
brain		SRR345200
brain		SRR345201
brain		SRR345202
brain		SRR345203
brain		SRR345204
brain		SRR345205
brain		SRR345206
brain		SRR345207
brain		SRR037919
embryo		SRR037920
embryo		SRR037921
embryo		SRR037922
embryo		SRR037923
embryo		SRR037924
embryo		SRR037925
embryo		SRR037926
embryo		SRR037927
embryo		SRR037928
embryo		SRR037929
embryo		SRR037930
embryo		SRR391845
embryo		SRR391846
embryo		SRR391847
embryo		SRR391848
embryo		SRR391849
embryo		SRR391850
embryo		SRR391851
embryo		SRR391852
embryo		SRR391853
embryo		SRR116846
epididymis		GSM566419
fibroblast		GSM566420
fibroblast		SRR039183
fibroblast		SRR039184
fibroblast		SRR039185
fibroblast		SRR039186
fibroblast		SRR042475
fibroblast		SRR390297
fibroblast		SRR390298
fibroblast		SRR042484
salivary gland		SRR042476
heart		SRR095853
heart		SRR095855BC1
heart		SRR095855BC10
heart		SRR095855BC2
heart		SRR095855BC3
heart		SRR095855BC4
heart		SRR095855BC5
heart		SRR095855BC6
heart		SRR095855BC7
heart		SRR095855BC8
heart		SRR095855BC9
heart		SRR065052
jejunum		SRR065053
jejunum		SRR065054
jejunum		SRR065055
jejunum		SRR065056
jejunum		SRR042480
kidney		SRR040488
liver		SRR042479
liver		SRR065045
liver		SRR065046
liver		SRR065047
liver		SRR065048
liver		SRR065049
liver		SRR065050
liver		SRR077864
liver		SRR077865
liver		SRR077866
liver		SRR042478
lung		SRR042468
lymph		SRR042469
lymph		SRR042470
lymph		SRR042472
lymph		SRR042473
lymph		SRR039152
muscle		SRR039153
muscle		SRR039154
muscle		SRR042483
muscle		SRR014234
ovary		SRR037896
ovary		SRR037897
ovary		SRR037898
ovary		SRR037899
ovary		SRR042486
ovary		SRR042481
pancreas		SRR065058
pancreas		SRR065059
pancreas		SRR042482
skin		SRR042463
spleen		SRR042465
spleen		SRR042466
spleen		SRR042467
spleen		SRR042471
spleen		SRR042487
spleen		SRR059768
spleen		SRR059769
spleen		SRR059770
spleen		SRR059771
spleen		SRR059772
spleen		SRR059773
spleen		GSM475281
testes		GSM509275
testes		GSM509279
testes		SRR014231
testes		SRR014235
testes		SRR014236
testes		SRR028731
testes		SRR037900
testes		SRR037901
testes		SRR037902
testes		SRR037903
testes		SRR042485
testes		SRR051939
testes		SRR051940
testes		SRR069809
Type_A_spermatogonia		SRR069810
pachytene_spermatocytes		SRR069811
round_spermatid		SRR248523
Thy1+_spermatogonia		SRR248524
Thy1+_spermatogonia		SRR248525
Thy1-_somatic_testes_cells		SRR248526
Thy1-_somatic_testes_cells		SRR248527
spermatogonia		SRR363956
testes		SRR363957
testes		SRR363958
testes		SRR363959
testes		SRR363960
testes		SRR363963
testes		SRR363964
testes		SRR553582
brain		SRR553583
cerebellum		SRR553584
heart		SRR553585
kidney		SRR553602
sertoli_cells		SRR553603
spermatids		SRR553604
spermatocytes		SRR553586
testes		SRR042464
thymus		SRR059765
thymus		SRR059766
thymus		SRR059767
thymus		SRR032476
uterus		SRR032477
uterus		SRR1509747
oocyte		SRR1509748
spermatozoa		SRR1509749
zygote		SRR1509750
spermatogonia		SRR1509751
foetal_primordial_germ_cells		SRR1647947
Dgcr8_WT_leptotene_zygotene_spermatocytes		SRR1647948
Dgcr8_cKO_leptotene_zygotene_spermatocytes		SRR1647949
Dicer_WT_leptotene_zygotene_spermatocytes		SRR1647950
Dicer_cKO_leptotene_zygotene_spermatocytes		SRR1647951
Dgcr8_WT_pachytene_spermatocytes		SRR1647952
Dgcr8_cKO_pachytene_spermatocytes		SRR1647953
Dicer_WT_pachytene_spermatocytes		SRR1647954
Dicer_cKO_pachytene_spermatocytes
...........................................................................................................................ATCGTAGAGGAAAATCCACGT......................................................211418695.0041869500002810610238100000000001803193844745924137192015649071432612970112576614647931530384641248544921681565692106445021645809341341192741199082526924535649961198267384772400739185059919854166551276160116130111953831136288222969489377311772224030120007101200027617291186628246436450000000021590262281872109141000200150400038111100062529840586017634791202913000000089831931320300000741060000010000000
...........................................................................................................................ATCGTAGAGGAAAATCCACGTT.....................................................22183346.0083346000023001002310000000000324516971810542111247235412391959315141790994190544445352704423652067412183292326210121817864352410312320183852137115945966779260525431451641533007421832494541026172133021185002120010122001000019112110101194931910000000011150103026213500024031500038114000076000865133112169272200000001275521213122100001280000000100000
...........................................................................................................................ATCGTAGAGGAAAATCCA.........................................................18164462.0064462000000000001000000000001420116912024000467104602470555014025731347051460100000024486169562010638532411325652900016330621115715001900000000000000000020000100200000000200019200000100100101930000000000000000000011300045500000000400000000000000000000000000
...........................................................................................................................ATCGTAGAGGAAAATCCACG.......................................................20125184.00251840000000000060000000000054526801534137774020383790183210306711776686106683641963724210640320318102182601181422722416349383252010186893333173240001405204117691647312311003000001000000000000071300000023630000000000024020135100400011011100021110000000000211500144440000000028051240100000480000000000000
...........................................................................................................................ATCGTAGAGGAAAATCCAC........................................................19124445.00244450000100000030000000000061217134152619020717101231634114483137265116269733247627524515150000109608473054713532728153833400024139031624125100120000000000000000005800000000000000000001020000011000000114000000000000000000001214333518000000003801000000000130000000000000
...........................................................................................................................ATCGTAGAGGAAAATCCACGTA.....................................................22119498.001949800050100000600000000000269113882183359421581491581021690681220591715826841247931856615272429123164184154132224789692710813416300021242146273921401520310000030000200000000202300100004633000000000057030122000200050000000270020001250008100111133860000000059010100000000120000000000000
......................................................................................GTAGATTCTCCTTCTATGAGT...........................................................................................21113652.00136520000000000002100000000013722639158281372866001693185817272160000000100000526201031371025058605126986564691810517978700310000010100000000000019300000000000000000000200000001000000000000070000000100000000606315525550000000100972023090000000000000012010000
.....................................................................................GGTAGATTCTCCTTCTATGAGT...........................................................................................22110474.001047400000400000000000000000503279915433245596329001441341502330600072771014241691876822026457121181231173125533812021311117630060558956353914160000110001000000000248000000004100000000000101000000000001000000080000000351000100414193010000000107320750000000100000001000000
..............................................................................................................................GTAGAGGAAAATCCACGT......................................................1819902.0099020000000000030000000000058027981803770928804275029185392679244011566150291713335511943561041243712131016310899181152052000833154610491098162198000000000000000000061000000000000000000000002001000400010000000220000000230000000173210000000011100240000000010000000000000
...........................................................................................................................ATCGTAGAGGAAAATCCACGC......................................................2116309.0063090000000000000000000000031517639725274550102167196172313916231769742010048617747227447615589035310301323920167343000207264285207310800000000001000000003200000001020000000000290000000000000001000000000000001000000044511000000004169110340100000100000000000000
......................................................................................GTAGATTCTCCTTCTATGAGTA..........................................................................................2216122.0061220000100000000000000000091219191015328113200318416242287000000000000850721683029723403136663296816905774600658275791500000100000000000000046000000000000000000003000000000000000000000100000001100000003136721531000000024281722730000000000010000000000
...........................................................................................................................ATCGTAGAGGAAAATCCACGTTT....................................................2315883.00588300000100000500000000000136339617122915258987137020001023655241643126810428228002202752051851230681451221624000323349404390172102000000000100000000221003000123210000000001100010100000002000000061100000000003201003000000000700040000000210000000000000
.....................................................................................GGTAGATTCTCCTTCTATGAGTA..........................................................................................2315172.0051720000000000020000000000032015133192614008189110000000000001045651071618105407578108461112143214151233000314450261209000000000000000000002400000000020000000000100000000000000000000021010000000000000002400000000800050000000000000000000000
......................................................................................GTAGATTCTCCTTCTATGAGTAA.........................................................................................2315155.00515500000100000000000000000683221662554132260030250429840700000000000021011022210009312232668063400656703000000000000000000001900000000000000000000000000000000000000000030000000001000000141137110100000001336143517591000000000000000000000
...........................................................................................................................ATCGTAGAGGAAAATCCACGTTA....................................................2314183.00418300000100000100000000000395515346415522231000003921842983361141020111010982867303932929181400036638049840710000000000000000000000388000000000800000000000000120001000060000000100000000000000000001110000000300010000000030000000000000
...........................................................................................................................ATCGTAGAGGAAAATCCACGTAA....................................................2313615.003615000001000005000000000002025501101532101011181105273121914392732341170210012011195886374882411018130001922192522081400000000000000000000038400000000000000000000000000000010003000000020000000010003000000000000000000000000000000000000000000
..........................................................................................................................AATCGTAGAGGAAAATCCACGT......................................................2212692.0026920000010000030000000000012563354119107233105601000116157110323615699427000003124726241849059151621000261376375403930000000000000000000008000000000010000000000001100000000000000000011100000000001000113100000000600020000000010000000000000
..............................................................................................................................GTAGAGGAAAATCCACGTT.....................................................1912356.0023560000000000000000000000086216286881198810224026254001007224310674252260133012010111512200000003123892844140100000000000000000000110000000000000000000000000000001000200000001000000010000000016610000000001800090000000000000000000000
...........................................................................................................................ATCGTAGAGGAAAATCCACGA......................................................2111748.00174800000000000000000000000474714120110320122751342622264662362245211069209032000011815412266620002128423332200000000001000000003100000000030000000000800000000000000010000010000000000000000000100000000100000000000000000000000000
...........................................................................................................................ATCGTAGAGGAAAATCC..........................................................1711306.00130600000000000000000000000000003106022163193913125331177711861700000000000032318330778272572000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100011100000000800060000000000000000000000
......................................................................................GTAGATTCTCCTTCTATGAGTAC.........................................................................................2311079.001079000000000000000000000002405846412955004483728900000000000025940031001051912312112012100118151007000000000000000000001100000000000000000000000000000000000000000000000000000000000856241000000014641501190010000000000000000000
...........................................................................................................................ATCGTAGAGGAAAATCCACGG......................................................2111063.001063000000000002000000000002002131010500100414067112146146491142821383801144016000502673620000001917420100000000000000000001800000000000000000000100001100000000000000010000000000000000000000000000200000000000000000000000000
...........................................................................................................................ATCGTAGAGGAAAAT............................................................151926.009260000000000000000000000000000000000000026184281762423522744500000000000096388210100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000
............................................................................................................................TCGTAGAGGAAAATCCACGT......................................................201864.00864000000000000010000000007806101100001001020101121090214215123100002611562361990010002631605700000000020100000000400000000210000000000000000000000000000000000000000000000000000000000000100030000000000000000000000
......................................................................................GTAGATTCTCCTTCTATGAG............................................................................................201802.0080200000000000000000000000800524011257009411373126000000000000022100200000781013003210000310000000000000000000000400000000000000000000000000000000000000000010000000000000000441819000000006403090000000000000000000000
....................................................................................AGGTAGATTCTCCTTCTATGAGT...........................................................................................231790.007900000000000000000000000023036092180434130000000812105217176033000008424432119791251160007774410100000000000000000000150000000000000000000100000000000000100000001010000000000000000140000000014100230000000000000000000000
......................................................................................GTAGATTCTCCTTCTATGAGTATC........................................................................................241766.00766000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000002222748323000000000
...........................................................................................................................ATCGTAGAGGAAAATCCACGTC.....................................................221762.00762000000000000000000000002122611423160113202225023310124226135081620010003065634139113000679675750900000000000000000000150000000001000000000030010000000000000000000100000000010000000138000000001801060000000000000000000000
...........................................................................................................................ATCGTAGAGGAAAATCCACGTG.....................................................221736.007360000000000000000000000010012134402151566030004060000249211210011272100314215200088901019110000000000000000000005800000000020000000000200000000000000000000000000000000000000000400000000100000000000000000000000000
.......................................................................................TAGATTCTCCTTCTATGAGTAC.........................................................................................221706.007060000100000000000000000019207014381500558500000000000133543100550125028121101112118000518163470230000000000000000000011600000000010000000000000000002000000000000000000000000000000001100000000400030000000000000000000000
............................................................................................................................TCGTAGAGGAAAATCCACGTTT....................................................221673.0067300000000000000000000000442914541459155916082309321172071714176201200000342222763638121000187902000000000200000000003000000000000000000000000000000000010000000011000000000000000000000000001501000000000000000000000000
.....................................................................................GGTAGATTCTCCTTCTATGAGTAA.........................................................................................241646.00646000000000000000000000001423311626140116221617000000000000067203210000132020601153969000000310240000000000000000000050000000000000000000000000000000000000000000000000000000000011030000000018010180000000000000000000000
...........................................................................................................................ATCGTAGAGGAAAATCCACGTAG....................................................231636.006360000000000000000000000030001110011000000000000000135100010000191325109935547400039384742000000000000000000000011400000000000000000000000000000000000000000000000000000000000001500000000100010000000000000000000000
..........................................................................................................................AATCGTAGAGGAAAATCCA.........................................................191614.006140000000000000000000000000010000000000104529300001000000000000020815518123000000055630000000000000000000000000000000000000000001000000000000009000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................ATCGTAGAGGAAAATC...........................................................161474.00474000000000000000000000000000000000000012259323151612014882200000000000079406330010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000500060000000000000000000000
......................................................................................GTAGATTCTCCTTCTATGAGTAT.........................................................................................231463.0046300000000000000000000000102001031110010621160000000000000391050000005190001014131005581201300000000000000000000420000000000000000000000000000000000000000000000000000000000061218551000000051010540000000000100000000000
.......................................................................................TAGATTCTCCTTCTATGAGTA..........................................................................................211460.00460000000000000000000000003010023100000100000000000038850000000015200092126970001523201300000000000000000000003100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................GTAGAGGAAAATCCACGTTTT...................................................211452.004520000000000000000000000030201466340004338566500000000000000010000000015712201100000103100000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000004310060000000000000000000000
.....................................................................................GGTAGATTCTCCTTCTATGAG............................................................................................211441.004410000000000000000000000018148223512000352111150000000001000041000000001420308361921380002330023000000000000000000009000000000000000000000000000000000000000000200000000000000001013000000001510040000000000000000000000
......................................................................................GTAGATTCTCCTTCTATG..............................................................................................181430.0043000000000000000000000000000002856300010820150000000000001010000000000000000010000432000000000000000000000000000000000000000000000000000000000000000000000000000000000015129000000001010601170000000000000000000000
..........................................................................................................................AATCGTAGAGGAAAATCCACG.......................................................211366.003660000000000000000000000019124016200110105000105003002102101000001054101022114130003349464103200000000000000000000400000000000000000000100000000000000000000000000000000000000001000000000200000000000000000000000000
...........................................................................................................................ATCGTAGAGGAAAATCCACGTTG....................................................231344.0034400000000000000000000000101003220043160000000200100120000000002414321161100003333417800000000000000000000003500000000000000000000100000000000000000000000000000000000000010100000000300000000000000000000000000
.............................................................................................................................CGTAGAGGAAAATCCACGT......................................................191327.003270000000000000000000000038112621810140000000320074540612282990320010045424451000001017121401500010000000000000000300000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................GTAGATTCTCCTTCTATGAGTAATC.......................................................................................251319.003190000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010613517700000000
...........................................................................................................................ATCGTAGAGGAAAATCCACGTGA....................................................231314.0031400000000000000000000000100000000000000000000200000020001002004437940250250001919223300000000000000000000004900000000000000000000000000000000000000000010000000000000000000000000000000000000000100000000000000
...........................................................................................................................ATCGTAGAGGAAAATCCACGTAAA...................................................241314.003140000000000000000000000050000000000000000000030011294200000000712541410040003135504500000000000000000000007300000000000000000000000000000000002000000000010000120000000000000000000000000000000000000000000000
..............................................................................................................................GTAGAGGAAAATCCACG.......................................................171299.002990000000000000000000000000000232329001423324211021223610720000000000000043547000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001402300000000430090000000000000000000000
.............................................................................................................AATATTAATGACTAATCGTAGAGG.................................................................241259.0025900000000000000000000000200107239008129130000000001000000011000000200006040000010000000000000000000000000000000000000000000000000000000000000000000000000000000000001130000000086030650000000000000000000000
..........................................................................................................................AATCGTAGAGGAAAATCCAC........................................................201255.002550000000000000000000000030121111000000301300010011000000000000736157230252000106330000000000000000000000100000000000000000001000000000000002000000000000000000000000000100000000300000000000000000000000000
.....................................................................................GGTAGATTCTCCTTCTATGAGTAT.........................................................................................241244.0024400000000000000000000000300002620041120000000000003121210100000012925610294340000015300000000000000000000001000000000000000000000000000000000001000000000010000000000000000000000000100070000000000000000000000
...........................................................................................................................ATCGTAGAGGAAAATCCACGTTC....................................................231243.002430000000000000000000000040000122002103010003083100033200000000104626780100002817454000000000000000000000001000000000010000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................TAGAGGAAAATCCACGTT.....................................................181221.002210000000000000000000000000100122000000000000000000000000000000000110000000427353400000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................GTAGAGGAAAATCCACGTTT....................................................201221.002210000000000000000000000090211769005111144000000403100450001000001002773010000172020190000000000000000000000800000000000000000000000000000000000000000010000000000000000000000000000900000000000000000000000000
..........................................................................................................................AATCGTAGAGGAAAATCCACGTT.....................................................231215.0021500000000000000000000000703412201002040000000400001413000000004202486001000282538330000000000000000000000000000000010000000000000000000000000000000000000000000000000002100000000001020000000000000000000000
...........................................................................................................................ATCGTAGAGGAAAATCCACGTTTT...................................................241213.00213000000000000000000000001001202814100000000000501000251000000001214230331101000012181693000000000000000000000600001000000000000000100000000000000000000000000000000000000001000000000000000000000000000000000000
...........................................................................................................................ATCGTAGAGGAAAATCCACGAA.....................................................221208.0020800000000000000000000000101200000210000521141461144194084320500050000010100000033100100000000001000000000200000000000000000000401000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................TCGTAGAGGAAAATCCACGTT.....................................................211198.0019800000000000001000000000190221242006462001000052131052301010000214232633010000350701000001000000000000000100000000020000000000000000000000000000000000000000000000000000100000000100010000000000000000000000
.....................................................................................GGTAGATTCTCCTTCTATGAGTATC........................................................................................251174.00174000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005281104900000000
.......................................................................................TAGATTCTCCTTCTATGAGT...........................................................................................201172.00172000010000000000000000008030022730001240000000000000212010000000110109870006219600000000000000000000003700000000000000000000200000000000000000000020000000001000000000100000000200010000000000000000000000
..........................................................................................ATTCTCCTTCTATGAGT...........................................................................................172169.503390000000000000000000000000000771778200000100000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..............................................................................................................................GTAGAGGAAAATCCACGC......................................................181164.00164000000000000000000000005012232700143211262410121412013100000000010000000000310640020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600040000000000000000000000
...........................................................................................................................ATCGTAGAGGAAAATCCACGTTAA...................................................241152.001520000000000000000000000000000000000000000000060103024300000010835251211021000119201100000000000000000000001400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................GTAGATTCTCCTTCTATGAGTAG.........................................................................................231137.001370000000000000000000000000000912700611290000000000000000000000000000001210000000000000000000000000000030000000000000000000000000000000000000000000000000000000000013070000000029000340000000000000000000000
.............................................................................................................................CGTAGAGGAAAATCCACG.......................................................181131.00131000000000000000000000000001029682500010000000000000000000000000000010110000011100000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................ATCGTAGAGGAAAATCCACT.......................................................201127.001270000000000000000000000030001000100001103186861800520031000001002101242221000022340000000000000000000000200000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
....................................................................................AGGTAGATTCTCCTTCTATGAGTA..........................................................................................241124.001240000000000000000000000010000010000001000000000000021001000000121101152824000114003700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..........................................................................................................................AATCGTAGAGGAAAATCC..........................................................181123.001230000000000000000000000000000000000000300000000000100000000000936100000000183823200000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................ATCGTAGAGGAAAATCCACGTAC....................................................231114.00114000000000000000000000000000000000000000100006100000120000000054291100220001010201000000000000000000000001700000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................ATCGTAGAGGAAAATCCACGCA.....................................................221111.001110000000000000000000000071300000000001040307317323311400100000011031001000065660000000000000000000000700000000000000000000800000000000000000000000000000010000000000000000000100000000000000000000000000
...........................................................................................................................ATCGTAGAGGAAAATCCACA.......................................................201110.001100000000000000000000000010000000001100401741212311105300000000000000120001100055860000000000000000000000300000000000000000000100000000000000000000000000000000000000001000000000100000000000000000000000000
....................................................................................AGGTAGATTCTCCTTCTAT...............................................................................................191109.00109000000000000000000000000000000000000042301064960110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................GTAGATTCTCCTTCTATGA.............................................................................................191108.0010800000000000000000000000200204156001110121200006000000000100100000121121100000000000000000000000000000000000000000000000000000000100000000000000000020000000000000000224200000000200020000000000000000000000
.....................................................................................GGTAGATTCTCCTTCTATGAGA...........................................................................................221107.0010700000000000000000000000221421365002041201000000000101110000000010000010111600000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................................................................................GGTAGATTCTCCTTCTATG..............................................................................................19199.00990000000000000000000000070100919120011147900000000000000100000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000800000000000000000000000000
................................................................................................................................AGAGGAAAATCCACGTTT....................................................18191.00910000000000000000000000000000010000000000000000000000000000000001100000000192926110000000000000000000000200000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................ATCGTAGAGGAAAATCCC.........................................................18189.008900000000000000000000000000000000000000000001002000000000010009641200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................GTAGAGGAAAATCCACGTA.....................................................19487.25349000000000000000000000007121123400263100000002201037169200000100002326000000326454701000000000000000000000900000000000000000000000100000000000000000010000000000000000021700000000000000000000000000000000000
...........................................................................................................................ATCGTAGAGGAAAATCCACC.......................................................20187.00870000000000000000000000000120000000000013310101021003000000010000012010010000020011110000000000000000000100000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................GTAGAGGAAAATCCACGTTA....................................................20180.0080000000000000000000000001000000000000000000000000010010000000000051100100017179220000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................ATCGTAGAGGAAAATCCACGTAGA...................................................24174.007400000000000000000000000000000000000000000000000000210000000001113321340005611907000000000000000000001200000000100000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
............................................................................................................................TCGTAGAGGAAAATCCACGTA.....................................................21174.0074000000000000000000000002000000000000000000002300000100000000000010212401100000310200000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................GGTAGATTCTCCTTCTATGA.............................................................................................20174.00740000000000000000000000081200316100241300200043000200000000000051072001000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000200000000000000000000000001000000000
.....................................................................................GGTAGATTCTCCTTCTATGAGTAC.........................................................................................24172.00720000000000000000000000040120061001431000000000000043000201010162121561100020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
..........................................................................................................................AATCGTAGAGGAAAATCCACGTA.....................................................23169.0069000000000000000000000000000000000000000000001000002100000000000053600100012102070000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................TTCTCCTTCTATGAGTA..........................................................................................17165.006500000000000000000000000000002037800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................GGTAGATTCTCCTTCTATGAGTT..........................................................................................23163.00630000000000000000000000020110234000101000000000000023000000000300000951200000130000000000000000000000700000000000000000000000000000000000000000000000000000000000000200000000000010000000000000000000000
....................................................................................AGGTAGATTCTCCTTCTATGAG............................................................................................22159.0059000000000000000000000004000024300030000000063010200110000000011143043500001201000000000000000000000200000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
.......................................................................................TAGATTCTCCTTCTATGAGTAA.........................................................................................22157.00570000000000000000000000060200311200101100000000000003000000000000000065700011110000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................AGGTAGATTCTCCTTCTATG..............................................................................................20156.00560000000000000000000000000110131003120748311041002000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
..........................................................................................................................AATCGTAGAGGAAAATCCACGC......................................................22154.00540000000000000000000000020211001001012010011030000000000000010001000000000106650000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000411010000000000000000000000
....................................................................................AGGTAGATTCTCCTTCTATGA.............................................................................................21154.005400000000000000000000000100000000010000931041141312000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000100010000000000000000000000
.........................................................................................GATTCTCCTTCTATGAGT...........................................................................................18153.005300000000000000000000000200000010000000000000000000000000000000000000000001017670000000000000000000000900000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
.............................................................................................................AATATTAATGACTAATCGTAGAG..................................................................23153.005300000000000000000000000000100421022220000000000000000000000000000002220000131000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000015000100000000000000000000000
.............................................................................................................................CGTAGAGGAAAATCCACGTT.....................................................20152.0052000000000000000000000005020029100000001000001000004240100000011032100000042030000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
cavPor3
ACCTCAAGCAC------------------------------AGCTTCACGTCTTCCTGGATGAAGTCATTCTTTGGTATTTAAAAGGTAGATTCTCCTTCTATGAGTACATTATTTATGATTAATCATAGAGGAAAATCCACGTTTTCAGTATCAAATGCGGCTTTGGAAACTTCTGAAGA--AGACATCACCATGGASizeHit CountTotal NormTotal
No Reads
dipOrd1
A-GTCAAGCACCGTTTTGTAGTTCAGGGTTTTTGTGTGTGT--GTTTGTGTGTCCC--CATGAAGCTCTTCTTTGGTATTTAAAAGGTAGATTCTCCTTCTATGAGTACATTATTTATGATTAATCATAGAGGAAAATCCACATTTTCAGTATCAAATGCTGCTTTGGAAAC--------------------------SizeHit CountTotal NormTotal
No Reads
hetGal2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
ochPri2
CGCTGGAGCAC------------------------------AGG-TCGCCTTTCCTTGGATGGAGCCA-TCTTTGGTATTTAAAAGGTAGATTCTCCTTCTATGAGTACATTGGTTATGATTAATCATAGAGGAAAATCCACGTTTTCAGTATCAAATGCCACTATGAAAGCCTGCGAGGACGCCGCGTCGCCACGGASizeHit CountTotal NormTotal
No Reads
oryCun2
AGCTGGAACAC------------------------------AGG-TCGCCTTTTCCCGGATGGAACCA-CCTTTGGTATTTAAAAGGTAGATTCTCCTTCTATGAGTACATTATTTATGATTAATCATAGAGGAAAATCCACGTTTTCAGTATCAAATGCGACTGGGAAAGACTCCGCGGATGCGACGTCGCCACAGASizeHit CountTotal NormTotalGSM1528820
Adult_testes		GSM1528821
Adult_testes_Mili_IP
......................................................................................GTAGATTCTCCTTCTATGAGT...........................................................................................21149.0049490
......................................................................................GTAGATTCTCCTTCTATGAGTAC.........................................................................................2314.00440
......................................................................................GTAGATTCTCCTTCTATGA.............................................................................................1911.00110
......................................................................................GTAGATTCTCCTTCTATGAGTAT.........................................................................................2311.00110
............................................................................................................................TCATAGAGGAAAATCCACGT......................................................2011.00110
...........................................................................................................................ATCATAGAGGAAAATCCAC........................................................1920.50101
rn5
GACGCAAGCAC------------------------------AAGTTCGAGGCCTCCTGGATCGAGTTGTTCTTTGATATTTAAAAGGTAGATTCTCCTTCTATGAGTACAATATTAATGACTAATCGTAGAGGAAAATCCACGTTTTCAGTATCAAATGCTGCTTGGGAAACCACCGAGGACAAGACGTCATCATGGASizeHit CountTotal NormTotalGSM1528817
Adult_testes		GSM1528818
Adult_testes_Mili_IP		GSM1528819
10dpp_testes
...........................................................................................................................ATCGTAGAGGAAAATCCAC........................................................191392.00392000
...........................................................................................................................ATCGTAGAGGAAAATCCACGT......................................................211325.00325000
...........................................................................................................................ATCGTAGAGGAAAATCCACG.......................................................201217.00217000
...........................................................................................................................ATCGTAGAGGAAAATCCA.........................................................18132.0032000
...........................................................................................................................ATCGTAGAGGAAAATCC..........................................................17125.0025000
...........................................................................................................................ATCGTAGAGGAAAATCCACGTT.....................................................22123.0023000
...........................................................................................................................ATCGTAGAGGAAAATCCACGTA.....................................................22119.0019000
..........................................................................................................................AATCGTAGAGGAAAATCCAC........................................................20118.0018000
............................................................................................................................TCGTAGAGGAAAATCCACG.......................................................19113.0013000
....................................................................................AGGTAGATTCTCCTTCTATGA.............................................................................................21111.0011000
..........................................................................................................................AATCGTAGAGGAAAATCCACG.......................................................2117.007000
............................................................................................................................TCGTAGAGGAAAATCCACGT......................................................2017.007000
.....................................................................................GGTAGATTCTCCTTCTATGA.............................................................................................2017.007000
..........................................................................................................................AATCGTAGAGGAAAATCCACGT......................................................2217.007000
.............................................................................................................................CGTAGAGGAAAATCCACG.......................................................1816.006000
....................................................................................AGGTAGATTCTCCTTCTATGAGT...........................................................................................2315.005000
......................................................................................GTAGATTCTCCTTCTATGAGT...........................................................................................2115.005000
...........................................................................................................................ATCGTAGAGGAAAATC...........................................................1624.509000
............................................................................................................................TCGTAGAGGAAAATCCAC........................................................1814.004000
...................................................................................AAGGTAGATTCTCCTTCTATGAG............................................................................................2313.003000
......................................................................................GTAGATTCTCCTTCTATGA.............................................................................................1912.002000
...................................................................................AAGGTAGATTCTCCTTCTATGA.............................................................................................2212.002000
............................................................................................................................TCGTAGAGGAAAATCCACGTT.....................................................2112.002000
...........................................................................................................................ATCGTAGAGGAAAATCCACGTAA....................................................2312.002000
....................................................................................AGGTAGATTCTCCTTCTATGAGC...........................................................................................2312.002000
...........................................................................................................................ATCGTAGAGGAAAATCCAT........................................................1911.001000
......................................................................................GTAGATTCTCCTTCTATGAG............................................................................................2011.001000
...........................................................................................................................ATCGTAGAGGAAAATCCAA........................................................1911.001000
...........................................................................................................................ATCGTAGAGGAAAATCCACGC......................................................2111.001000
............................................................................................................................TCGTAGAGGAAAATCCA.........................................................1711.001000
...........................................................................................................................ATCGTAGAGGAAAATCCACGTAG....................................................2311.001000
....................................................................................................................................GAAAATCCACGTTTT...................................................1560.171000
...........................................................................................TTCTCCTTCTATGAG............................................................................................15200.051000
speTri2
GACACAAGCGC------------------------------AGATTCACGTTTTCCGGGATGCAATCTTTCTTTGGTATTTAAAAGGTAGATTCTCCTTCTATGAGTACATTATTTATGATTAATCATAGAGGAAAATCCACGTTTTCAGTATCAAATGCTGCTTG-GAAACCTCCGTCGGTGGGAAG-GGCCGCAGASizeHit CountTotal NormTotal
No Reads

Generated: 06/17/2015 at 02:28 PM