ID:

mmu-mir-3063

 Coordinate:

chr11:95963292-95963383 -

 Confidence:

Known

 Type:

Unknown

 [View on miRBase]
[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-36.4 -36.3

Sense Strand Reads

GGAGGGCCGGTGTGCTCTTCCCAGCAGGCCTGAGAATGAGTGGGAATCAGGGCATTTGGGCCTGGCTGGAGATCAGGTTTGCACACTGTCTTGAGAACAATGTTCCAGTGAGGAATCCTGATCTCTCGCCCCCAATTGAGCCAGCTGGCCACAGCCCACCCCTTGGAATATCACCATTGCAATCATAGCTTG
***************************************************.((.(((((...(((.((((((((((.((...(((((......((((...)))))))))...)).)))))))))).)))))))).)).......*********************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR1509750
spermatogonia		 SRR390297
fibroblast		 SRR391847
embryo		 SRR391848
embryo		 SRR391845
embryo		 SRR248523
Thy1+_spermatogonia		 SRR391853
embryo		 SRR069809
Type_A_spermatogonia		 SRR248524
Thy1+_spermatogonia		 SRR391852
embryo		 SRR391849
embryo		 SRR391850
embryo		 SRR391851
embryo		 SRR014231
testes		 SRR391846
embryo		 SRR014235
testes		 SRR037921
embryo		 SRR1509751
foetal_primordial_germ_cells		 SRR039185
fibroblast		 SRR014236
testes		 SRR039184
fibroblast		 SRR248526
Thy1-_somatic_testes_cells		 SRR060845
brain		 SRR248525
Thy1-_somatic_testes_cells		 SRR248527
spermatogonia		 SRR345197
brain		 GSM509275
testes		 SRR037919
embryo		 SRR038744
brain		 SRR039154
muscle		 SRR040488
liver		 SRR051940
testes		 SRR073954
blood		 SRR073955
blood		 SRR345201
brain		 SRR553585
kidney		 SRR1509748
spermatozoa		 SRR037902
testes		 SRR345199
brain		 SRR065055
jejunum		 SRR345196
brain		 SRR345198
brain
............................................................................................................TGAGGAATCCTGATCTCTCGCC.............................................................. 22 0 1 37.00 37 0 5 1 8 0 0 4 1 0 3 2 2 4 0 0 0 3 0 0 0 0 0 1 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................TGGAGATCAGGTTTGCACACTGT....................................................................................................... 23 0 1 25.00 25 0 15 1 0 7 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................TGAGGAATCCTGATCTCTCGC............................................................... 21 0 1 18.00 18 0 0 0 4 0 2 3 0 1 0 4 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................TGGAGATCAGGTTTGCACACT......................................................................................................... 21 0 1 9.00 9 0 0 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................TGAGGAATCCTGATCTCTCGCATC............................................................ 24 2 1 9.00 9 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................TGAGAATGAGTGGGAATCAGGGCATT........................................................................................................................................ 26 0 1 7.00 7 0 0 0 0 0 0 0 3 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................TGGAGATCAGGTTTGCACACTG........................................................................................................ 22 0 1 7.00 7 0 0 5 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................CTGGAGATCAGGTTTGCACACT......................................................................................................... 22 0 1 7.00 7 0 0 3 0 2 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................TGGAGATCAGGTTTGCACACTGA....................................................................................................... 23 1 2 5.50 11 0 0 2 1 1 0 2 0 0 1 0 1 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................CTTGAGAACAATGTTCCAGTGAGGAATCATC........................................................................ 31 2 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGAGAACAATGTTCCAGTGAGGAATC........................................................................... 26 0 1 5.00 5 0 0 0 0 0 3 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................TGAGAATGAGTGGGAATCAGGGCA.......................................................................................................................................... 24 0 1 4.00 4 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................CAGGGCATTTGGGCCTGGCTGGAGATCATC................................................................................................................... 30 2 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TGTCTTGAGAACAATGTTCCAGTGAGG............................................................................... 27 0 1 3.00 3 0 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GGAATATCACCATTGCAATCAT...... 22 0 1 3.00 3 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................TGAGGAATCCTGATCTCTCG................................................................ 20 0 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................TGGAGATCAGGTTTGCACACTGTT...................................................................................................... 24 1 1 3.00 3 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................TGAGGAATCCTGATCTCTCGCCA............................................................. 23 1 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................TGAGGAATCCTGATCTC................................................................... 17 0 1 2.00 2 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................TGAGAATGAGTGGGAATCAGGGCAT......................................................................................................................................... 25 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................GCAGGCCTGAGAATGAGTGGGAATC................................................................................................................................................ 25 0 1 2.00 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................TGAGGAATCCTGATCTCTCGCATA............................................................ 24 3 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................CTGGAGATCAGGTTTGCACACTGT....................................................................................................... 24 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................TTCCCAGCAGGCCTGAGAATGAGTGGG.................................................................................................................................................... 27 0 1 2.00 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................TGGGAATCAGGGCATTTGGGCCTGGCT............................................................................................................................. 27 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................AGGCCTGAGAATGAGTGGGAAT................................................................................................................................................. 22 0 1 2.00 2 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................CCTGGCTGGAGATCAGGTTTGCA............................................................................................................. 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................AGCCCATCCCTTGGAATATCACCATT.............. 26 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................TTCCCAGCAGGACTAAGAATGAGTGG..................................................................................................................................................... 26 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................TGAGAATGAGTGGGAATCAGTGCATA........................................................................................................................................ 26 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................GAGGAATCCTGATCTCTCGCCCCC........................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TTGAGAACAATGTTCCAGTGAGGAATCC.......................................................................... 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................TGGCTGGAGATCAGGTTTGCACACT......................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................TGGAGATCAGGTTTGCACACTGTCT..................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................CTTGAGAACAATGTTCCAGTGAGGAATT........................................................................... 28 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................AGCAGGCCTGAGAATGAGTGGGAATC................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................TGGAGATCAGGTTTGCACACTGTA...................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................TGAGTGGGAATCAGGGCA.......................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................TGGCTGGAGATCAGGTTTG............................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGATCTCTCGCCCCCAATTGAGCCAGC............................................... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................CACTGTCTTGAGAACAATGTTCCAGT................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................CAGGCCTGAGAATGAGTGGGAATCAG.............................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................GAGATCAGGTTTGCACACTGT....................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................CTTGAGAACAATGTTCCTGTGAGGAATCATC........................................................................ 31 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................TGAGAATGAGTGGGAATCAGGGCATTT....................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................TGAGGAATCCTGATCTCTCGCCATC........................................................... 25 2 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................GTGAGGAATCCTGATCTCTCGCC.............................................................. 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................TGAGTGGGAATCAGGGCATTTGGGCCTGT............................................................................................................................... 29 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TGTCTTGAGAACAATGTTCCAGTGAGGA.............................................................................. 28 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................TGGGGAATCCTGATCTCTCGC............................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................GAGCCAGCTGGCCACAGCCC................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................TTGGAATATCACCATTGCAATCATAGCTTG 30 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................TGGAATATCACCATTGCAATCAT...... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............GCTCTTCCCAGCAGGCCTGAGAA............................................................................................................................................................ 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGAGAACAATGTTCCAGTGAGGAATCCCG........................................................................ 29 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................TGGAGATCAGGTTTGCACTCTG........................................................................................................ 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................GAATGAGAGGGAATCAGGGCATTTGGGG................................................................................................................................... 28 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................TGGAGATCAGGTTTGCACACTAT....................................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TTGAGAACAATGTTCCAGTGAGGAAT............................................................................ 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................GGAGATCAGGTTTGCACACTGT....................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................TGAGAATGAGTGGGAATCAGGGCATATA...................................................................................................................................... 28 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................TGCGGAATCCTGATCTCTCGCC.............................................................. 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................TGAGAACAATGTTCCAGTGAGGAATCCT......................................................................... 28 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................GCACACTGTCTTGAGAACAAT........................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................CTTGAGAACAATGTTCCAGTGAGGAATCATA........................................................................ 31 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................CACACTGTCTTGAGAACAATGTTCCAGTGAGGA.............................................................................. 33 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................TGAGGAATCCTGTTCTTTCGC............................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................TGGAGATCAGGTTTGCACAC.......................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................TGAGAATGAGTGGGAATCAGGGCCT......................................................................................................................................... 25 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................GGCCTGAGAATGAGTGGGAATC................................................................................................................................................ 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................GCAGGCCTGAGAATGAGTGGGAATCA............................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................CACACTGTCTTGAGAACAATGTTCCAG.................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................CAGCCCACCCCTTGGAATATCACCATT.............. 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TCTTGAGAACAATGTTCCAGTGAGGAATC........................................................................... 29 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................TGAGAATGAGTGGGAATCAGGGCATATC...................................................................................................................................... 28 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................CAGGCCTGAGAATGAGTGGGAATCAGGG............................................................................................................................................ 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................TCAGGGCATTTGGGCCTGGCTGGAGA........................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TCTTGAGAACAATGTTCCAGTGAGGAAT............................................................................ 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................GGGCCTGGCTGGAGATCAGGTTT................................................................................................................ 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................GAATGAGTGGGAATCAGGGCATATGGGC................................................................................................................................... 28 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................CAGCAGGCCTGAGAATGAGTGGGA................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................GGAGATCAGGTTTGCACACT......................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GGAATATCACCATTGCAATCA....... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................CCTGAGAAAGTGTGGGCATCAGGGC........................................................................................................................................... 25 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................GAGGAATCCTGATGTCTCGC............................................................... 20 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................TGAGGAAGCCTGATCTCTCGC............................................................... 21 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................TGAGGAATCCTTATCTCTCGCCATC........................................................... 25 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................TGAGGAATCCTGATCTCTCGAATC............................................................ 24 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GGAGGGCCCGTGTTCTCTTCGC.......................................................................................................................................................................... 22 3 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................TGGAGATCAGGTTTGAACACTGA....................................................................................................... 23 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......CCGGTGTGCTCTTCC........................................................................................................................................................................... 15 0 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................TGAAGAACCCTGATCTCTCGC............................................................... 21 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................AATGTTCCCGTGTGGAATC........................................................................... 19 2 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0
......CCGGTGAGCTCTTCCCGGC....................................................................................................................................................................... 19 2 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
....GGCCGGTGTGCTC............................................................................................................................................................................... 13 0 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.............................CTCAGAATGGGTGGGAATCA............................................................................................................................................... 20 2 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................CCCGTGGGGAATCCTGATC..................................................................... 19 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................TGGGAATCAGGGCATGT....................................................................................................................................... 17 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..................................................GGCATGTGGGCGTGGCTGGAC......................................................................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................AGGAATCCCGATCTCT.................................................................. 16 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

CCTCCCGGCCACACGAGAAGGGTCGTCCGGACTCTTACTCACCCTTAGTCCCGTAAACCCGGACCGACCTCTAGTCCAAACGTGTGACAGAACTCTTGTTACAAGGTCACTCCTTAGGACTAGAGAGCGGGGGTTAACTCGGTCGACCGGTGTCGGGTGGGGAACCTTATAGTGGTAACGTTAGTATCGAAC
***********************************************.((.(((((...(((.((((((((((.((...(((((......((((...)))))))))...)).)))))))))).)))))))).)).......*************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR065059
pancreas		 SRR345200
brain		 SRR1509750
spermatogonia		 SRR059768
spleen		 SRR095855BC7
heart		 SRR116846
epididymis		 SRR391848
embryo		 SRR391850
embryo		 SRR014236
testes		 SRR345199
brain		 SRR073954
blood		 SRR391852
embryo		 SRR037929
embryo		 SRR065054
jejunum		 SRR095855BC3
heart		 SRR042469
lymph		 SRR042487
spleen		 SRR1509749
zygote		 SRR1509751
foetal_primordial_germ_cells		 SRR345198
brain		 SRR345201
brain		 SRR391845
embryo
......................................................................................................................ACTAGGGTGCTGGGGTTAACTCG................................................... 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................CTAGAGAGCGTGGGTT......................................................... 16 1 20 0.30 6 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...CCCGGCCACA................................................................................................................................................................................... 10 0 20 0.25 5 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TGTCGGGTTGGGAACCT......................... 17 1 20 0.20 4 0 0 0 0 0 0 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................GGGGGTTGACTCGGTTGGCCGG.......................................... 22 3 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TGTCGGGTTGGGAACCTT........................ 18 1 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................GAGCGGGGGTT......................................................... 11 0 20 0.20 4 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................GGTCAACCGGTGTCGGGT.................................. 18 1 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................CCTCCTTAGGACTAGAGA.................................................................. 18 1 8 0.13 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....CCGGCCACAGGAGAAGGTTC........................................................................................................................................................................ 20 2 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................TGAGTACTGGAGAGCGGGGGTT......................................................... 22 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................CGCTGCTTAGGACTAGAG................................................................... 18 2 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TCTTGTTGCAAGGTCAAGCCT.............................................................................. 21 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................GCGGGGGTCAACTCGG.................................................. 16 1 14 0.07 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................GACCTAGAGAGCGGGGGTT......................................................... 19 2 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................CACCGGTGTCGGATTGGGAACC.......................... 22 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................AACTAGAGAGCGCGGGTT......................................................... 18 2 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................GTCGGGTTGGGAACCTT........................ 17 1 19 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................AGTATCGAAC 10 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................GGACTAGGGAGCGGGG............................................................ 16 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
................................................................CTACCTCTAGTCTAAAGGTGTG.......................................................................................................... 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................GCCCTAGAGAGCGGGGGT.......................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................CACTAGAGAGCGGGGGCT......................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
......................................................................................................................................TACCTCGGTCGAGCGGTGTC...................................... 20 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................GCCTGGAGAGCGGGGGTT......................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
mm10 chr11:95963242-95963433 - mmu-mir-3063 GGAGGGCCGGTGTGCTCTTCCCAGCAGGCCTGAGAATGAGTGGGAATCAGGG-CATTTGG-GCCT-GGCTGGAGATCAGGTTTGCACACTGTCTTGAGAACAATG-TTCCAGTGA---GGAATCCTGATCTCTCGCCCCCAA------TTGAGCCAGCTGGCCA---------------CAGCC---CACCCCTTGGAATATCACCATTGC--AATCATAGCTTG
cavPor3 scaffold_53:8365606-8365795 - CAGAGCCCACTGTGC--C-CCCTGCAGGCCTGAGAAGGTGTGGGAATCGGGGA-CCCCGGGGC-C-TTTGGGAGATCAGGTTTGCCCACCCACCTGACACAGCTG-CTCC-GTGA---GGAA-CCTGATCCCTGGCTCCTCAGAGCCC----------TGGCCAAGCAGCCC-AGG---CTGCT---CACCCCTCGG--CATCACCGCAGA--AA--CCAGCTCA
dipOrd1 Unknown ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
hetGal2 Unknown ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ochPri2 scaffold_1315:253392-253580 + AAGCGC-----GTGCTCTCCCGGGCAGGCTTGAGAATGAATGGGAATCAGGGACAGGCGG-GCCG-GGCTGTAGATCAGGTTTGCTCGCTTGCTTGAGACCGATGGCTCCAGTG------AATCCTGATCGTTTGCCCCCCACCACCC----------CACC--------CC-AGCAAGCGGCC---CGCCCCAAGAGATGTCCCC-TTGAAAAATTTTAGCTCA
oryCun2 chr19:38409126-38409321 - CAGCGC-----GTGCGCTCCCGGGCAGGCCTGAGAATGAGTGGGGATCAGGGACAGGCAG-GCCG-GGCTGTAGATCAGGTTTGCCCGCTTGCTCGAGACAGATG-CTCCGGTGAGGAGGAACCCTGATCTCTCGGCCCCCA-CGCCC---CACCTATTGGC--------CCGACA---CCGCC---AGCCCC-AGGGGTGTCACCATTGA--AATTCTAGCTCA
rn5 chr10:83584943-83585137 - GGAGGGCCGGCGTGCTCCTCCTAGCAGGCCTGAGAATGAGTGGGAATCAGGG-CGTTTGG-GTCT-GGCTGGAGATCAGGTTTGCACACTGTCTTGAGAAAAATG-TTCCAGTGA---GGAATCCTGATCTCTCGCCCCCAA------TTCAGCCCGCTGGCCG--C------AGC---CCGCC---TACCCC-TGGAATGTCACCATTGC--AGTTGTAGCTTG
speTri2 JH393300:12430100-12430296 - GGGAGT-----GCGCTCT-CCCGGCAGGCCTGAGAATGAGTGGGAATCAGGGA-CCTCGGGGC-TGGGCTGGAGATCAGGTTTGCCCACTTGCTTGAAAAGGATG-TTCTGGTGA---GGAATCCTGATCTCTCTGTCCCAA-ACCCC----------TGGCTGACCAGCCC-AGCCA--GGCCCACCACACCTTGGGGTGTCACCATTCA--AATTCTAGCTCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
mm10
GGAGGGCCGGTGTGCTCTTCCCAGCAGGCCTGAGAATGAGTGGGAATCAGGG-CATTTGG-GCCT-GGCTGGAGATCAGGTTTGCACACTGTCTTGAGAACAATG-TTCCAGTGA---GGAATCCTGATCTCTCGCCCCCAA------TTGAGCCAGCTGGCCA---------------CAGCC---CACCCCTTGGAATATCACCATTGC--AATCATAGCTTGSizeHit CountTotal NormTotalSRR042455
blood		SRR042459
blood		SRR042460
blood		SRR069834
blood		SRR073954
blood		SRR073955
blood		SRR525238
Blood		SRR525237
Blood		SRR042456
bone marrow		SRR042457
bone marrow		SRR042461
bone marrow		SRR042462
bone marrow		GSM317181
brain		GSM317182
brain		GSM361394
brain		GSM361395
brain		GSM361398
brain		GSM361399
brain		GSM361402
brain		GSM361407
brain		GSM361408
brain		GSM361415
brain		GSM361430
brain		GSM510444
brain		SRR037904
brain		SRR037905
brain		SRR037906
brain		SRR037907
brain		SRR038741
brain		SRR038744
brain		SRR039610
brain		SRR042477
brain		SRR060845
brain		SRR206939
brain		SRR206940
brain		SRR206941
brain		SRR206942
brain		SRR345196
brain		SRR345197
brain		SRR345198
brain		SRR345199
brain		SRR345200
brain		SRR345201
brain		SRR345202
brain		SRR345203
brain		SRR345204
brain		SRR345205
brain		SRR345206
brain		SRR345207
brain		SRR037919
embryo		SRR037920
embryo		SRR037921
embryo		SRR037922
embryo		SRR037923
embryo		SRR037924
embryo		SRR037925
embryo		SRR037926
embryo		SRR037927
embryo		SRR037928
embryo		SRR037929
embryo		SRR037930
embryo		SRR391845
embryo		SRR391846
embryo		SRR391847
embryo		SRR391848
embryo		SRR391849
embryo		SRR391850
embryo		SRR391851
embryo		SRR391852
embryo		SRR391853
embryo		SRR116846
epididymis		GSM566419
fibroblast		GSM566420
fibroblast		SRR039183
fibroblast		SRR039184
fibroblast		SRR039185
fibroblast		SRR039186
fibroblast		SRR042475
fibroblast		SRR390297
fibroblast		SRR390298
fibroblast		SRR042484
salivary gland		SRR042476
heart		SRR095853
heart		SRR095855BC1
heart		SRR095855BC10
heart		SRR095855BC2
heart		SRR095855BC3
heart		SRR095855BC4
heart		SRR095855BC5
heart		SRR095855BC6
heart		SRR095855BC7
heart		SRR095855BC8
heart		SRR095855BC9
heart		SRR065052
jejunum		SRR065053
jejunum		SRR065054
jejunum		SRR065055
jejunum		SRR065056
jejunum		SRR042480
kidney		SRR040488
liver		SRR042479
liver		SRR065045
liver		SRR065046
liver		SRR065047
liver		SRR065048
liver		SRR065049
liver		SRR065050
liver		SRR077864
liver		SRR077865
liver		SRR077866
liver		SRR042478
lung		SRR042468
lymph		SRR042469
lymph		SRR042470
lymph		SRR042472
lymph		SRR042473
lymph		SRR039152
muscle		SRR039153
muscle		SRR039154
muscle		SRR042483
muscle		SRR014234
ovary		SRR037896
ovary		SRR037897
ovary		SRR037898
ovary		SRR037899
ovary		SRR042486
ovary		SRR042481
pancreas		SRR065058
pancreas		SRR065059
pancreas		SRR042482
skin		SRR042463
spleen		SRR042465
spleen		SRR042466
spleen		SRR042467
spleen		SRR042471
spleen		SRR042487
spleen		SRR059768
spleen		SRR059769
spleen		SRR059770
spleen		SRR059771
spleen		SRR059772
spleen		SRR059773
spleen		GSM475281
testes		GSM509275
testes		GSM509279
testes		SRR014231
testes		SRR014235
testes		SRR014236
testes		SRR028731
testes		SRR037900
testes		SRR037901
testes		SRR037902
testes		SRR037903
testes		SRR042485
testes		SRR051939
testes		SRR051940
testes		SRR069809
Type_A_spermatogonia		SRR069810
pachytene_spermatocytes		SRR069811
round_spermatid		SRR248523
Thy1+_spermatogonia		SRR248524
Thy1+_spermatogonia		SRR248525
Thy1-_somatic_testes_cells		SRR248526
Thy1-_somatic_testes_cells		SRR248527
spermatogonia		SRR363956
testes		SRR363957
testes		SRR363958
testes		SRR363959
testes		SRR363960
testes		SRR363963
testes		SRR363964
testes		SRR553582
brain		SRR553583
cerebellum		SRR553584
heart		SRR553585
kidney		SRR553602
sertoli_cells		SRR553603
spermatids		SRR553604
spermatocytes		SRR553586
testes		SRR042464
thymus		SRR059765
thymus		SRR059766
thymus		SRR059767
thymus		SRR032476
uterus		SRR032477
uterus		SRR1509747
oocyte		SRR1509748
spermatozoa		SRR1509749
zygote		SRR1509750
spermatogonia		SRR1509751
foetal_primordial_germ_cells		SRR1647947
Dgcr8_WT_leptotene_zygotene_spermatocytes		SRR1647948
Dgcr8_cKO_leptotene_zygotene_spermatocytes		SRR1647949
Dicer_WT_leptotene_zygotene_spermatocytes		SRR1647950
Dicer_cKO_leptotene_zygotene_spermatocytes		SRR1647951
Dgcr8_WT_pachytene_spermatocytes		SRR1647952
Dgcr8_cKO_pachytene_spermatocytes		SRR1647953
Dicer_WT_pachytene_spermatocytes		SRR1647954
Dicer_cKO_pachytene_spermatocytes
................................................................................................................TGA---GGAATCCTGATCTCTCGCC........................................................................................22137.0037000000000000000000000000000000001000000000000000010300000000000182243400000000500000000000000000000000000000000000000010000000000000000000000000000000000000100001000000000000000000000000000000000000
.....................................................................TGGAGATCAGGTTTGCACACTGT.....................................................................................................................................23125.00250000000000000000000000000000000000000000000000000000000000000711000000000001001500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................TGA---GGAATCCTGATCTCTCGC.........................................................................................21118.0018000000000000000000000000000000001000000000000000000000000000000044100300000100000000000000000000000100000000000000000000000000000000000000000000000000000000000210000000000000000000000000000000000000
.....................................................................TGGAGATCAGGTTTGCACACT.......................................................................................................................................2119.009000001000000000000000000000000000000000000000000000000000000030300000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TGAGAATGAGTGGGAATCAGGG-CATT........................................................................................................................................................................2617.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000300020000000000000000000000000000000000000
.....................................................................TGGAGATCAGGTTTGCACACTG......................................................................................................................................2217.007000000000000000000000000000000000000000000000000000000000000020500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................CTGGAGATCAGGTTTGCACACT.......................................................................................................................................2217.007000000000000000000000000000000000000000000000000000000000000022300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................TGGAGATCAGGTTTGCACACTGA.....................................................................................................................................2325.5011000000000000000000000000000000000000000000000000000000000000010210121200000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................TGAGAACAATG-TTCCAGTGA---GGAATC.....................................................................................................2615.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000310100000000000000000000000000000000000
..............................TGAGAATGAGTGGGAATCAGGG-CA..........................................................................................................................................................................2414.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000100010000000000000000000000000000000000000
...............................................CAGGG-CATTTGG-GCCT-GGCTGGAGATCATC.................................................................................................................................................3014.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000
.........................................................................................TGTCTTGAGAACAATG-TTCCAGTGA---GG.........................................................................................................2713.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000210000000000000000000000000000000000000
...................................................................................................................................................................................................GGAATATCACCATTGC--AATCAT......2213.003000000000000000000000000000000000000000000000000000000000000000011100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................TGA---GGAATCCTGATCTCTCG..........................................................................................2013.003000000000000000000000000000000000000000000000000000000000000000000000000002100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................TGGAGATCAGGTTTGCACACTGTT....................................................................................................................................2413.003000000000000000000000000000000000000000000000000000000000000002100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................TGA---GGAATCCTGATCTCTCGCCA.......................................................................................2313.003000000000000000000000000000000000000000000000000000100000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................TGA---GGAATCCTGATCTC.............................................................................................1712.002000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
..............................TGAGAATGAGTGGGAATCAGGG-CAT.........................................................................................................................................................................2512.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000
.......................GCAGGCCTGAGAATGAGTGGGAATC.................................................................................................................................................................................2512.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000
................................................................................................................TGA---GGAATCCTGATCTCTCGCATA......................................................................................2412.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
....................................................................CTGGAGATCAGGTTTGCACACTGT.....................................................................................................................................2412.002000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TTCCCAGCAGGCCTGAGAATGAGTGGG.....................................................................................................................................................................................2712.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000100000000000000000000000000000000000000
........................................TGGGAATCAGGG-CATTTGG-GCCT-GGCT...........................................................................................................................................................2712.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000
.........................AGGCCTGAGAATGAGTGGGAAT..................................................................................................................................................................................2212.002000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................CCT-GGCTGGAGATCAGGTTTGCA...........................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................GA---GGAATCCTGATCTCTCGCCCCC.....................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................TTGAGAACAATG-TTCCAGTGA---GGAATCC....................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
................................................................T-GGCTGGAGATCAGGTTTGCACACT.......................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................TGGAGATCAGGTTTGCACACTGTCT...................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
............................................................................................CTTGAGAACAATG-TTCCAGTGA---GGAATT.....................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
......................AGCAGGCCTGAGAATGAGTGGGAATC.................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
.....................................................................TGGAGATCAGGTTTGCACACTGTA....................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................TGAGTGGGAATCAGGG-CA..........................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................T-GGCTGGAGATCAGGTTTG.............................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TGATCTCTCGCCCCCAA------TTGAGCCAGC...................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
......................................................................................CACTGTCTTGAGAACAATG-TTCCAGT................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
........................CAGGCCTGAGAATGAGTGGGAATCAG...............................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.......................................................................GAGATCAGGTTTGCACACTGT.....................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TGAGAATGAGTGGGAATCAGGG-CATTT.......................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...............................................................................................................GTGA---GGAATCCTGATCTCTCGCC........................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................TGAGTGGGAATCAGGG-CATTTGG-GCCT-GT.............................................................................................................................................................2911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.........................................................................................TGTCTTGAGAACAATG-TTCCAGTGA---GGA........................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
......................................................................................................................................................GAGCCAGCTGGCCA---------------CAGCC---C.....................................2011.001000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................TTGGAATATCACCATTGC--AATCATAGCTTG3011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................TGGAATATCACCATTGC--AATCAT......2311.001000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............GCTCTTCCCAGCAGGCCTGAGAA.............................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................TTGAGAACAATG-TTCCAGTGA---GGAAT......................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
......................................................................GGAGATCAGGTTTGCACACTGT.....................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................TGAGAACAATG-TTCCAGTGA---GGAATCCT...................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...................................................................................GCACACTGTCTTGAGAACAAT.........................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................CACACTGTCTTGAGAACAATG-TTCCAGTGA---GGA........................................................................................................3311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.....................................................................TGGAGATCAGGTTTGCACAC........................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GGCCTGAGAATGAGTGGGAATC.................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................GCAGGCCTGAGAATGAGTGGGAATCA................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
....................................................................................CACACTGTCTTGAGAACAATG-TTCCAG.................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...................................................................................................................................................................................CAGCC---CACCCCTTGGAATATCACCATT................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
...........................................................................................TCTTGAGAACAATG-TTCCAGTGA---GGAATC.....................................................................................................2911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
........................CAGGCCTGAGAATGAGTGGGAATCAGGG-............................................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..............................................TCAGGG-CATTTGG-GCCT-GGCTGGAGA......................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
...........................................................................................TCTTGAGAACAATG-TTCCAGTGA---GGAAT......................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..........................................................GG-GCCT-GGCTGGAGATCAGGTTT..............................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................CAGCAGGCCTGAGAATGAGTGGGA....................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................GGAGATCAGGTTTGCACACT.......................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................GGAATATCACCATTGC--AATCA.......2111.001000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......CCGGTGTGCTCTTCC............................................................................................................................................................................................................1540.251000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
....GGCCGGTGTGCTC................................................................................................................................................................................................................13180.061000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
cavPor3
CAGAGCCCACTGTGC--C-CCCTGCAGGCCTGAGAAGGTGTGGGAATCGGGGA-CCCCGGGGC-C-TTTGGGAGATCAGGTTTGCCCACCCACCTGACACAGCTG-CTCC-GTGA---GGAA-CCTGATCCCTGGCTCCTCAGAGCCC----------TGGCCAAGCAGCCC-AGG---CTGCT---CACCCCTCGG--CATCACCGCAGA--AA--CCAGCTCASizeHit CountTotal NormTotal
No Reads
dipOrd1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
hetGal2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
ochPri2
AAGCGC-----GTGCTCTCCCGGGCAGGCTTGAGAATGAATGGGAATCAGGGACAGGCGG-GCCG-GGCTGTAGATCAGGTTTGCTCGCTTGCTTGAGACCGATGGCTCCAGTG------AATCCTGATCGTTTGCCCCCCACCACCC----------CACC--------CC-AGCAAGCGGCC---CGCCCCAAGAGATGTCCCC-TTGAAAAATTTTAGCTCASizeHit CountTotal NormTotal
No Reads
oryCun2
CAGCGC-----GTGCGCTCCCGGGCAGGCCTGAGAATGAGTGGGGATCAGGGACAGGCAG-GCCG-GGCTGTAGATCAGGTTTGCCCGCTTGCTCGAGACAGATG-CTCCGGTGAGGAGGAACCCTGATCTCTCGGCCCCCA-CGCCC---CACCTATTGGC--------CCGACA---CCGCC---AGCCCC-AGGGGTGTCACCATTGA--AATTCTAGCTCASizeHit CountTotal NormTotalGSM1528820
Adult_testes		GSM1528821
Adult_testes_Mili_IP
No Reads
rn5
GGAGGGCCGGCGTGCTCCTCCTAGCAGGCCTGAGAATGAGTGGGAATCAGGG-CGTTTGG-GTCT-GGCTGGAGATCAGGTTTGCACACTGTCTTGAGAAAAATG-TTCCAGTGA---GGAATCCTGATCTCTCGCCCCCAA------TTCAGCCCGCTGGCCG--C------AGC---CCGCC---TACCCC-TGGAATGTCACCATTGC--AGTTGTAGCTTGSizeHit CountTotal NormTotalGSM1528817
Adult_testes		GSM1528818
Adult_testes_Mili_IP		GSM1528819
10dpp_testes
......................................................................................................ATG-TTCCAGTGA---GGAATCCTGATCA..............................................................................................2511.001000
..................................................................................................................................................................................................TGGAATGTCACCATTGC--AGTTGTAGC...2611.001000
..............................................................................................TGAGAAAAATG-TTCCAGTGA---GGAATC.....................................................................................................2611.001000
speTri2
GGGAGT-----GCGCTCT-CCCGGCAGGCCTGAGAATGAGTGGGAATCAGGGA-CCTCGGGGC-TGGGCTGGAGATCAGGTTTGCCCACTTGCTTGAAAAGGATG-TTCTGGTGA---GGAATCCTGATCTCTCTGTCCCAA-ACCCC----------TGGCTGACCAGCCC-AGCCA--GGCCCACCACACCTTGGGGTGTCACCATTCA--AATTCTAGCTCASizeHit CountTotal NormTotal
No Reads

Generated: 06/17/2015 at 01:26 PM