ID:

mmu-mir-144

 Coordinate:

chr11:78073005-78073070 +

 Confidence:

Known

 Type:

Unknown

 [View on miRBase]
[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-37.9

Sense Strand Reads

ATCCCCTGGCTCACTCCAGGCCTGCTGCTCACCTCCTCCTCCAGGACCTTGGCTGGGATATCATCATATACTGTAAGTTTGTGATGAGACACTACAGTATAGATGATGTACTAGTCTGGGTACCCCACCTCCAGAGCCTGCCTGGTTTGCAGCAGAGATGCAGAAG
****************************************...((((((.((((((.((((((((.(((((((((.((((......))))..))))))))))))))))).)))))).)))).))...*************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR073955
blood		 SRR391845
embryo		 SRR391847
embryo		 SRR553582
brain		 SRR391846
embryo		 SRR073954
blood		 SRR553584
heart		 SRR248526
Thy1-_somatic_testes_cells		 SRR040488
liver		 SRR077866
liver		 SRR391848
embryo		 SRR248525
Thy1-_somatic_testes_cells		 GSM510444
brain		 SRR077864
liver		 SRR037925
embryo		 SRR1509750
spermatogonia		 SRR037924
embryo		 SRR391849
embryo		 SRR037921
embryo		 SRR391852
embryo		 SRR391850
embryo		 SRR553585
kidney		 SRR037920
embryo		 SRR1509748
spermatozoa		 SRR095855BC1
heart		 SRR391853
embryo		 SRR391851
embryo		 SRR095855BC7
heart		 SRR345196
brain		 SRR037906
brain		 SRR095855BC5
heart		 SRR037905
brain		 SRR037929
embryo		 SRR037928
embryo		 GSM475281
testes		 SRR059765
thymus		 SRR077865
liver		 SRR037922
embryo		 SRR345197
brain		 SRR345198
brain		 SRR1509751
foetal_primordial_germ_cells		 SRR037926
embryo		 SRR095855BC3
heart		 SRR345200
brain		 SRR037923
embryo		 SRR095855BC2
heart		 SRR038744
brain		 SRR059767
thymus		 SRR095855BC8
heart		 SRR059769
spleen		 SRR095855BC6
heart		 SRR037897
ovary		 SRR095853
heart		 SRR037907
brain		 SRR095855BC4
heart		 SRR014234
ovary		 SRR037898
ovary		 SRR345201
brain		 SRR037919
embryo		 SRR037927
embryo		 SRR042480
kidney		 SRR038741
brain		 SRR345199
brain		 SRR248523
Thy1+_spermatogonia		 SRR037930
embryo		 SRR037902
testes		 SRR037904
brain		 SRR345203
brain		 SRR039610
brain		 SRR037901
testes		 SRR059766
thymus		 SRR206940
brain		 SRR065046
liver		 SRR345206
brain		 SRR095855BC10
heart		 SRR1509749
zygote		 SRR1509747
oocyte		 SRR345202
brain		 SRR037899
ovary		 SRR059768
spleen		 SRR248524
Thy1+_spermatogonia		 SRR059770
spleen		 SRR206939
brain		 SRR095855BC9
heart		 SRR345207
brain		 SRR042477
brain		 SRR553586
testes		 SRR345205
brain		 SRR042486
ovary		 SRR032477
uterus		 SRR065049
liver		 SRR037903
testes		 SRR065050
liver		 SRR065053
jejunum		 SRR065048
liver		 SRR065047
liver		 SRR553583
cerebellum		 SRR206942
brain		 SRR042481
pancreas		 SRR345204
brain		 SRR206941
brain		 SRR065045
liver		 SRR042476
heart		 SRR553603
spermatids		 SRR065052
jejunum		 SRR065055
jejunum		 SRR042478
lung		 SRR065059
pancreas		 SRR042484
salivary gland		 SRR1647947
Dgcr8_WT_leptotene_zygotene_spermatocytes		 SRR065054
jejunum		 SRR065056
jejunum		 SRR060845
brain		 SRR065058
pancreas		 SRR248527
spermatogonia		 SRR037900
testes		 SRR553602
sertoli_cells		 SRR1647948
Dgcr8_cKO_leptotene_zygotene_spermatocytes		 SRR116846
epididymis		 SRR032476
uterus		 SRR042483
muscle		 SRR1647950
Dicer_cKO_leptotene_zygotene_spermatocytes		 SRR525237
Blood		 SRR037896
ovary		 SRR039184
fibroblast		 SRR042479
liver		 SRR039153
muscle		 SRR1647949
Dicer_WT_leptotene_zygotene_spermatocytes		 GSM509275
testes		 GSM509279
testes		 SRR039154
muscle		 SRR051940
testes		 SRR039183
fibroblast		 SRR039186
fibroblast		 SRR039152
muscle		 SRR553604
spermatocytes		 SRR069810
pachytene_spermatocytes		 SRR042456
bone marrow		 SRR042459
blood		 SRR042473
lymph		 SRR069809
Type_A_spermatogonia		 SRR1647953
Dicer_WT_pachytene_spermatocytes		 SRR525238
Blood		 SRR039185
fibroblast		 SRR042466
spleen		 SRR042467
spleen		 SRR042485
testes		 SRR069811
round_spermatid
............................................................................................TACAGTATAGATGATGTACT...................................................... 20 0 1 63856.00 63856 3911 3694 3548 68 4560 1979 25 320 6636 6926 1210 217 2179 4443 2911 0 2754 778 2646 663 683 13 2166 0 93 500 393 13 25 770 72 655 537 495 232 824 971 785 13 70 0 553 7 74 562 18 84 493 9 514 6 242 0 250 9 321 176 27 325 152 11 23 25 8 124 100 146 12 18 100 198 3 1 8 8 0 0 4 50 126 8 121 2 4 12 0 2 2 2 7 2 24 2 1 1 0 0 2 5 5 6 2 0 1 2 6 1 0 5 11 2 0 2 0 2 14 0 5 0 2 1 2 0 4 7 0 1 2 1 1 0 0 3 5 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................GGATATCATCATATACTGTAAGT........................................................................................ 23 0 1 52557.00 52557 14305 456 650 4147 596 7321 2721 4477 176 99 953 2318 88 56 105 4 105 845 149 2072 549 785 112 0 2221 1615 1285 86 0 20 877 26 33 28 107 3 15 33 0 0 0 14 355 0 11 341 319 2 48 4 184 2 0 5 47 2 1 0 14 6 114 161 0 127 1 2 4 25 95 1 3 52 93 3 42 0 0 11 0 0 57 1 36 14 16 71 45 45 60 11 26 1 33 45 30 28 15 27 26 17 16 34 35 28 36 31 30 22 10 14 22 26 15 14 25 1 8 14 7 3 7 11 0 0 0 5 2 0 1 1 3 0 0 0 0 1 0 1 0 0 0 2 0 0 0 0 1 0
.......................................................GGATATCATCATATACTGTAAG......................................................................................... 22 0 1 43823.00 43823 561 50 50 14117 51 271 10928 5906 6 82 59 3457 82 57 54 0 47 57 13 102 43 2301 14 0 356 120 51 40 3 18 706 13 17 11 96 0 14 1 0 0 0 13 459 0 12 335 223 1 611 0 335 6 0 4 443 0 2 0 2 5 29 110 0 217 7 1 5 6 80 2 0 160 34 2 136 0 0 12 0 0 91 0 93 107 16 24 61 18 21 6 8 1 9 6 15 11 53 36 11 3 41 7 17 32 9 6 11 8 11 3 12 7 1 6 8 0 22 4 9 2 3 1 0 0 0 0 0 2 1 1 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................TACAGTATAGATGATGTA........................................................ 18 0 1 36155.00 36155 143 11128 10972 83 6529 62 44 66 34 20 61 37 233 5 192 0 189 26 34 83 35 14 22 2 20 68 85 9 1974 94 20 59 98 60 212 9 1 16 1022 626 0 47 4 490 42 12 37 4 7 1 3 16 0 22 3 3 13 304 4 15 3 6 217 1 22 10 7 95 14 11 0 2 2 117 1 0 0 73 4 3 0 0 1 2 52 0 0 16 2 19 1 5 4 1 2 4 0 3 0 10 1 0 1 1 0 0 0 0 3 7 1 0 0 1 0 1 1 4 0 3 0 1 0 0 0 0 2 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
............................................................................................TACAGTATAGATGATGTAC....................................................... 19 0 1 31122.00 31122 3960 2816 2390 107 2695 1020 72 250 1247 1002 472 161 2519 454 1083 5 974 223 256 421 159 21 187 3 60 201 356 16 176 908 41 767 834 708 597 392 50 72 30 46 0 235 15 33 249 32 70 212 13 157 3 342 0 255 11 84 285 20 25 240 2 28 20 5 176 141 132 13 30 124 41 3 0 16 19 0 0 4 112 30 1 32 5 20 2 0 0 2 0 0 4 47 1 1 1 1 1 6 1 1 2 0 0 1 0 0 0 0 5 16 1 0 0 0 3 16 0 5 0 1 1 1 0 7 1 0 0 2 0 0 0 4 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TACAGTATAGATGATGTACTA..................................................... 21 0 1 17096.00 17096 917 1892 1863 1 1783 857 0 2 1357 427 2799 3 58 185 34 0 21 1017 542 250 1305 0 441 0 0 189 182 0 0 21 0 20 13 10 30 25 58 154 44 23 0 4 0 17 2 1 1 27 0 44 0 3 0 2 0 25 2 31 54 4 49 0 7 0 0 3 3 45 0 0 5 0 28 26 0 0 0 19 1 12 0 12 1 0 12 2 0 5 2 19 12 1 7 3 12 5 0 0 10 2 0 3 3 1 2 6 1 0 1 0 1 4 13 0 0 1 0 0 0 6 1 0 2 0 2 0 0 0 1 1 0 1 0 1 0 0 0 0 0 0 1 0 1 0 0 0 0 0
............................................................................................TACAGTATAGATGATGTACTAT.................................................... 22 1 1 5205.00 5205 101 953 877 0 632 79 0 7 161 45 931 4 8 23 0 0 6 537 50 29 433 0 45 2 1 29 19 0 0 2 0 3 2 1 7 5 5 9 9 1 0 1 0 0 2 0 0 2 0 6 0 0 0 1 0 3 0 7 3 0 22 0 0 0 0 0 0 28 1 0 4 0 20 9 0 0 0 11 0 2 0 2 0 0 2 3 0 1 1 3 7 0 3 2 3 2 0 0 4 6 0 6 3 0 6 1 1 0 2 0 1 1 4 0 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................GGATATCATCATATACTGTAAGTATC..................................................................................... 26 2 1 4595.00 4595 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2254 0 0 0 0 0 0 0 1531 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 648 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 85 71 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................CTACAGTATAGATGATGTACT...................................................... 21 0 1 4399.00 4399 347 274 344 18 455 131 37 129 146 192 30 33 408 103 51 0 64 30 259 100 11 12 217 0 5 63 35 4 0 130 5 111 67 80 9 21 44 61 0 0 0 13 0 0 9 3 5 14 1 7 1 36 55 32 1 9 14 0 27 19 1 2 0 2 10 29 13 4 5 11 1 2 1 0 1 0 0 0 12 6 0 2 3 2 0 1 0 0 0 1 0 8 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 1 0 1 1 0 0 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................GGATATCATCATATACTGTAAGTT....................................................................................... 24 0 1 3224.00 3224 900 47 53 225 61 474 146 219 2 16 93 116 7 12 8 0 16 82 5 117 41 34 4 0 110 64 61 9 0 2 44 2 1 3 6 0 0 0 0 0 0 1 10 0 5 19 15 0 0 0 5 0 0 0 1 0 0 0 2 0 31 16 0 7 0 0 0 2 3 0 0 4 7 0 1 0 0 0 0 0 2 0 2 1 0 14 2 3 5 3 8 0 1 5 3 1 1 1 1 0 2 1 7 3 4 4 5 8 3 0 3 5 2 3 0 0 0 1 3 0 2 0 0 0 0 5 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................CTACAGTATAGATGATGTA........................................................ 19 0 1 2842.00 2842 3 565 719 17 627 1 8 11 0 0 1 4 43 0 22 0 25 0 3 4 0 3 2 0 0 3 2 0 138 15 1 8 12 6 17 1 0 0 7 55 0 3 1 81 3 0 1 0 2 0 0 1 307 5 0 0 1 7 0 2 10 0 20 0 0 4 4 14 0 4 0 1 0 15 0 0 0 4 0 0 0 0 0 0 7 0 0 1 0 6 0 1 0 0 0 2 0 0 0 8 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TACAGTATAGATGATGT......................................................... 17 0 1 2647.00 2647 48 1047 859 9 457 42 1 6 0 0 5 9 0 1 0 0 0 2 0 3 2 1 0 0 1 0 1 1 65 0 3 0 0 0 0 0 0 0 14 14 0 0 0 9 0 2 5 0 1 0 0 0 0 0 0 0 0 3 0 0 0 0 4 0 0 0 0 6 2 0 0 0 0 10 2 0 0 1 0 0 0 0 0 3 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................GGATATCATCATATACTGTAAGATC...................................................................................... 25 2 1 2571.00 2571 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1537 0 0 0 0 0 0 0 716 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 134 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 85 91 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TACAGTATAGATGATGTACTAA.................................................... 22 1 1 2468.00 2468 22 482 471 0 250 12 0 1 108 18 455 1 0 7 2 0 2 257 9 16 281 0 4 0 0 13 7 0 0 0 0 2 1 1 0 2 3 5 1 1 0 1 0 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 3 0 0 0 0 0 1 8 0 0 0 0 3 1 0 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 1 0 1 0 0 1 0 0 1 3 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................GGATATCATCATATACTGTA........................................................................................... 20 0 1 2335.00 2335 38 1 2 576 0 24 234 203 0 3 20 90 11 5 3 0 5 8 2 5 21 131 1 0 48 1 3 16 47 1 47 2 2 1 8 0 0 1 24 208 0 1 20 169 0 11 10 0 10 0 9 0 0 0 1 0 0 28 0 0 20 5 71 8 0 0 0 15 6 0 0 9 1 14 3 0 0 33 0 0 3 0 2 0 17 3 4 11 2 2 4 0 7 6 2 5 1 2 2 2 1 1 0 3 0 3 0 5 2 0 1 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................GATATCATCATATACTGTAAGT........................................................................................ 22 0 1 2078.00 2078 620 1 5 280 10 85 235 224 8 3 3 87 27 2 1 0 2 7 3 9 6 100 1 0 37 4 2 110 0 1 31 2 0 1 2 0 0 1 0 0 0 0 29 0 1 38 9 0 4 0 47 0 0 0 3 0 0 0 0 0 0 1 0 5 0 1 0 0 4 1 0 0 0 0 0 0 0 0 0 0 3 0 2 3 0 0 7 0 0 0 0 1 0 0 0 0 2 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................TGGGATATCATCATATACTGTA........................................................................................... 22 0 1 2077.00 2077 337 12 22 335 10 124 129 88 19 13 167 89 3 3 2 8 2 114 18 49 75 42 5 0 94 20 44 6 0 0 17 2 0 0 3 0 0 5 0 2 0 1 2 0 1 27 18 0 6 1 4 0 0 0 3 0 1 0 0 0 19 11 0 5 0 0 0 1 5 0 0 5 8 0 0 0 0 1 0 0 1 0 8 2 6 6 1 2 1 3 4 0 2 3 2 5 6 2 3 1 3 0 4 3 4 1 4 8 0 0 1 0 2 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................CTACAGTATAGATGATGTAC....................................................... 20 0 1 2021.00 2021 63 174 206 30 237 21 51 104 20 39 13 37 237 19 32 0 25 3 10 32 0 18 8 2 3 27 17 1 0 67 0 59 43 55 44 6 6 2 0 3 0 2 1 3 4 2 7 6 0 2 0 20 119 19 3 3 21 0 0 10 0 4 2 0 12 19 7 0 0 12 1 2 0 0 1 0 0 0 5 3 0 0 3 3 0 0 0 0 0 0 0 2 0 0 0 0 2 1 0 2 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................GGATATCATCATATACTGTAA.......................................................................................... 21 0 1 1824.00 1824 48 6 10 271 8 61 143 157 0 9 119 92 8 3 1 0 1 68 3 16 66 49 1 0 9 8 6 4 0 5 16 0 0 0 45 0 2 1 35 41 0 1 9 43 0 3 8 0 1 0 3 0 0 1 2 0 0 44 0 0 53 4 19 7 0 0 1 16 1 0 0 3 18 9 1 0 0 39 0 0 1 0 0 0 23 16 1 14 12 9 20 0 10 12 12 11 0 1 8 16 3 9 1 0 7 9 4 7 0 0 4 5 0 1 1 0 0 0 0 0 0 0 0 0 0 0 2 0 0 1 1 0 0 0 2 0 2 0 0 0 1 0 0 0 0 0 0 0
............................................................................................TACAGTATAGATGATGTACTATT................................................... 23 1 1 1681.00 1681 38 457 471 0 322 16 0 0 19 6 102 3 3 7 15 0 11 93 8 8 50 0 5 0 0 4 3 0 0 1 0 0 1 1 2 0 1 4 0 0 0 2 0 0 5 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 4 0 0 0 0 0 0 2 0 0 0 0 2 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 1 0 2 0 0 0 0 0 2 0 0 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................GGCTATCATCATATACTGTAAGT........................................................................................ 23 1 1 1630.00 1630 948 0 0 4 0 660 0 6 0 0 0 2 0 0 1 0 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................GATATCATCATATACTGTAAGTT....................................................................................... 23 0 1 1536.00 1536 176 1 4 326 4 59 160 288 7 1 3 125 4 5 2 0 2 2 1 7 0 75 3 0 49 6 1 51 0 2 30 0 3 2 0 1 0 0 0 0 0 1 25 0 0 34 9 0 5 1 12 0 0 0 3 0 0 0 0 0 0 6 0 4 0 1 0 0 7 0 1 3 0 0 1 0 0 0 0 0 8 0 2 1 0 0 1 0 0 0 0 0 0 0 1 0 0 3 0 2 2 0 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................GGATATCATCATATACTGTAAGTA....................................................................................... 24 1 1 1482.00 1482 384 9 17 167 14 241 132 144 0 0 11 95 1 0 2 0 3 7 2 38 1 41 1 6 5 46 56 1 0 0 6 0 0 0 0 0 0 0 0 0 0 1 7 0 0 1 4 0 2 0 6 0 0 0 3 0 0 0 0 0 0 2 0 7 0 0 0 0 2 0 0 2 0 0 0 0 0 0 0 0 3 0 3 0 0 0 0 0 0 0 1 0 0 0 0 1 2 0 0 0 2 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................ATATCATCATATACTGTAAGT........................................................................................ 21 0 1 1411.00 1411 6 0 0 4 0 6 28 3 1 0 0 1 0 0 0 0 0 2 2 0 0 4 2 0 2 1 1 1311 0 0 3 0 1 0 0 0 0 0 0 0 0 0 9 0 0 9 2 0 0 0 9 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................GGATATCATCATATACTGTCAGT........................................................................................ 23 1 1 1219.00 1219 608 0 1 0 0 588 0 0 0 4 1 7 0 0 0 0 0 0 1 0 1 1 0 0 3 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TACAGTATAGATGATGTACTAAA................................................... 23 2 1 1137.00 1137 24 303 485 0 188 43 0 0 2 2 20 0 2 0 3 0 0 20 5 6 18 0 7 0 0 2 3 0 0 0 0 0 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TACAGTATAGATGATGTACTT..................................................... 21 1 1 1133.00 1133 31 115 96 0 96 15 0 2 196 41 145 0 6 15 8 0 11 44 15 7 70 0 12 0 1 5 8 0 0 4 0 1 1 0 17 9 7 9 8 3 0 1 0 5 2 0 1 4 0 8 0 0 0 0 0 7 0 13 2 0 19 0 3 0 1 0 0 10 0 0 3 0 7 3 0 0 0 1 0 5 0 1 0 0 1 2 0 1 0 6 5 0 3 0 4 3 0 0 2 0 0 5 0 0 1 0 0 0 0 0 2 0 2 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TACAGTATAGATGATGTACTATTT.................................................. 24 2 1 1054.00 1054 36 332 351 0 229 7 0 0 6 1 29 0 1 3 0 0 0 33 1 2 15 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................TGGGATATCATCATATACTGT............................................................................................ 21 0 1 976.00 976 214 24 23 46 16 21 12 25 91 14 120 15 10 11 2 0 3 99 5 9 45 6 5 0 33 12 4 1 0 3 3 3 0 2 6 3 2 0 0 1 0 0 1 1 0 12 4 2 0 1 0 1 0 1 0 2 0 0 1 1 2 4 1 3 0 2 0 2 4 0 1 1 1 3 1 0 0 0 0 0 1 0 3 0 0 3 0 1 4 4 1 0 1 1 0 3 1 0 2 3 1 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................CTACAGTATAGATGATGTACTAT.................................................... 23 1 1 931.00 931 18 218 277 0 202 14 0 2 2 0 43 0 1 1 3 0 4 49 15 14 16 0 18 0 0 9 8 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................GGATATCATCATATACTGTAAGTATA..................................................................................... 26 2 1 923.00 923 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 416 0 0 0 0 0 0 0 308 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 163 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18 18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................GGCTATCATCATATACTGTCAGT........................................................................................ 23 2 1 771.00 771 348 0 0 0 0 423 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................CTACAGTATAGATGATGTACTA..................................................... 22 0 1 696.00 696 36 96 124 0 166 18 0 1 15 3 22 0 2 1 3 0 2 13 50 32 10 0 38 1 0 28 15 0 0 0 0 0 1 0 0 0 1 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................ATATCATCATATACTGTAAG......................................................................................... 20 0 1 656.00 656 1 0 0 3 0 0 1 0 0 1 0 2 0 0 0 0 0 0 0 0 0 2 0 0 1 0 0 581 0 0 3 0 0 0 0 0 0 0 0 0 0 0 21 0 0 1 0 0 0 0 12 0 0 0 24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................GGATATCATCATATACTGTAAGATA...................................................................................... 25 2 1 597.00 597 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 353 0 0 0 0 0 0 0 169 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16 24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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............................................................................................TACAGTATAGATTATGTAC....................................................... 19 1 3 29.33 88 33 1 1 5 0 7 0 0 3 7 0 0 4 4 4 0 3 0 0 0 0 0 1 0 1 0 0 1 1 1 2 1 1 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................GGATATCATCGTATACTGTAAG......................................................................................... 22 1 1 29.00 29 0 0 0 8 0 1 1 2 0 1 0 1 0 0 1 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................GGATCTCATCATATACTGTAAG......................................................................................... 22 1 1 29.00 29 4 0 0 2 0 8 6 1 0 0 0 3 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................GGACATCATCATATACTGTAAG......................................................................................... 22 1 1 29.00 29 0 0 0 6 0 0 4 1 0 0 0 6 0 0 1 0 0 0 0 1 0 4 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TAGGGGACCGAGTGAGGTCCGGACGACGAGTGGAGGAGGAGGTCCTGGAACCGACCCTATAGTAGTATATGACATTCAAACACTACTCTGTGATGTCATATCTACTACATGATCAGACCCATGGGGTGGAGGTCTCGGACGGACCAAACGTCGTCTCTACGTCTTC
***************************************...((((((.((((((.((((((((.(((((((((.((((......))))..))))))))))))))))).)))))).)))).))...**************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM361408
brain		 GSM361430
brain		 GSM361415
brain		 GSM361407
brain		 GSM361402
brain		 GSM361395
brain		 GSM361398
brain		 GSM361394
brain		 GSM361399
brain		 SRR345200
brain		 SRR345198
brain		 SRR1509749
zygote		 SRR073955
blood		 SRR391850
embryo
............................................................................................ATGTCATATCTACTACATGA...................................................... 20 0 1 809.00 809 378 158 38 38 59 59 39 20 20 0 0 0 0 0
............................................................................................ATGTCATATCTACTACATG....................................................... 19 0 1 569.00 569 208 98 47 47 52 52 33 16 16 0 0 0 0 0
............................................................................................ATGTCATATCTACTACATGC...................................................... 20 1 1 161.00 161 1 0 80 80 0 0 0 0 0 0 0 0 0 0
............................................................................................ATGTCATATCTACTACATGAT..................................................... 21 0 1 79.00 79 25 9 13 13 5 5 5 2 2 0 0 0 0 0
............................................................................................ATTTCATATCTACTACATGA...................................................... 20 1 1 60.00 60 28 29 0 0 0 0 1 1 1 0 0 0 0 0
............................................................................................ATTTCATATCTACTACATG....................................................... 19 1 2 53.50 107 46 61 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................GATGTCATATCTACTACATGA...................................................... 21 0 1 51.00 51 35 9 1 1 1 1 1 1 1 0 0 0 0 0
............................................................................................ATGTCATATCTACTACAT........................................................ 18 0 1 17.00 17 2 7 2 2 1 1 0 1 1 0 0 0 0 0
...........................................................................................GATGTCATATCTACTACATG....................................................... 20 0 1 17.00 17 6 1 3 3 2 2 0 0 0 0 0 0 0 0
............................................................................................ATGTCATATCTACTACATGATA.................................................... 22 1 1 14.00 14 5 2 0 0 1 1 1 2 2 0 0 0 0 0
............................................................................................CTGTCATATCTACTACATGA...................................................... 20 1 1 12.00 12 0 0 1 1 5 5 0 0 0 0 0 0 0 0
...........................................................................................TATGTCATATCTACTACATGA...................................................... 21 1 1 11.00 11 5 6 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ACGTCATATCTACTACATGA...................................................... 20 1 1 8.00 8 1 1 0 0 3 3 0 0 0 0 0 0 0 0
............................................................................................ATTTCATATCTACTACATGAT..................................................... 21 1 1 7.00 7 3 2 0 0 0 0 0 1 1 0 0 0 0 0
............................................................................................ATGTCATATCTACTACATGATAA................................................... 23 1 1 6.00 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................GATGTCATATCTACTACATGC...................................................... 21 1 1 6.00 6 0 0 3 3 0 0 0 0 0 0 0 0 0 0
............................................................................................ATGTCATCTCTACTACATGA...................................................... 20 1 1 6.00 6 0 0 0 0 3 3 0 0 0 0 0 0 0 0
...........................................................................................GATTTCATATCTACTACATG....................................................... 20 1 1 6.00 6 0 4 0 0 0 0 0 1 1 0 0 0 0 0
............................................................................................ATGTCATATCTACTACATT....................................................... 19 1 3 4.67 14 5 1 4 4 0 0 0 0 0 0 0 0 0 0
............................................................................................ATGTCATATCTACTACGTGA...................................................... 20 1 1 4.00 4 1 0 1 1 0 0 1 0 0 0 0 0 0 0
............................................................................................ATGTCACATCTACTACATGA...................................................... 20 1 1 4.00 4 2 0 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................GATTTCATATCTACTACATGA...................................................... 21 1 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ATGTAATATCTACTACATG....................................................... 19 1 1 3.00 3 1 2 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ATGTCATATCTACTACATGT...................................................... 20 1 1 3.00 3 0 1 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................CTGTCATATCTACTACATG....................................................... 19 1 1 3.00 3 1 0 0 0 1 1 0 0 0 0 0 0 0 0
.......................................................CCTATAGTAGTATATGACATTCA........................................................................................ 23 0 1 3.00 3 2 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................ATTTCATATCTACTACATGATA.................................................... 22 2 2 2.50 5 3 0 0 0 0 0 0 1 1 0 0 0 0 0
............................................................................................ATGTCATATCTACTACACGA...................................................... 20 1 2 2.50 5 2 1 0 0 0 0 0 1 1 0 0 0 0 0
............................................................................................AAGTCATATCTACTACATGA...................................................... 20 1 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................ATGTCATATCTCCTACATGA...................................................... 20 1 1 2.00 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0
............................................................................................ATGTCATATCTACTACAGGA...................................................... 20 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ATGTCATATCTACTACATGATT.................................................... 22 1 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................ATGTCATATCTACTACA......................................................... 17 0 1 2.00 2 0 0 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................ATGTCATATCTACTACATGAA..................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................AGGTCATATCTACTACATGA...................................................... 20 1 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................ATGTCATATCTACTACATA....................................................... 19 1 4 2.00 8 0 0 4 4 0 0 0 0 0 0 0 0 0 0
...........................................................................................GATGTCATATCTACTACATGAA..................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ATGTCATATCTACTCCATGA...................................................... 20 1 1 2.00 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0
............................................................................................ATGTCATCTCTACTACATG....................................................... 19 1 1 2.00 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0
............................................................................................ATGTCATATCCACTACATGAT..................................................... 21 1 1 2.00 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0
............................................................................................ATGTAATATCTACTACATGA...................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................CTGTCATATCTACTACATGC...................................................... 20 2 3 1.33 4 0 0 2 2 0 0 0 0 0 0 0 0 0 0
............................................................................................ACGTCATATCTACTACATG....................................................... 19 1 3 1.33 4 0 0 1 1 1 1 0 0 0 0 0 0 0 0
............................................................................................ATGTCCTATCTACTACATGC...................................................... 20 2 4 1.00 4 0 0 2 2 0 0 0 0 0 0 0 0 0 0
...........................................................................................GATGTCATATCTACTACAT........................................................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................GATGTCATATCTACTACATGATA.................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................AATGTCATATCTACTACATGA...................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TATGTCATATCTACTACATGAT..................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ATGTCATACCTACTACATGA...................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ATGTTATATCTACTACATGA...................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ATTTCATATCTACTACATGATAA................................................... 23 2 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ATGTCATTTCTACTACATGA...................................................... 20 1 2 1.00 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0
............................................................................................ATGTAATATCTACTACATGAT..................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ATGTCATATCTACTACATGG...................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ATATCATATCTACTACATGAT..................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ATGTCATACCTACTACATG....................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TATGTCATATCTACTACATG....................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................GATATCATATCTACTACATGA...................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................GATGTCATATCTACTACATGAT..................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CTTATAGTAGTATATGACATTC......................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ATATCATATCTACTACATGA...................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................GATGTCATATCTACTACATGAAAA................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ATGCCATATCTACTACATG....................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ATGTCATCTCTACTACATGC...................................................... 20 2 3 0.67 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................ATGTCATATCTACTACATC....................................................... 19 1 4 0.50 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TCTGTCATATCTACTACATGA...................................................... 21 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ATGTCCTATCTACTACATG....................................................... 19 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................AAGTCATATCTACTACATG....................................................... 19 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ATGTCATATCTACTACACG....................................................... 19 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ATCTCATATCTACTACATGA...................................................... 20 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ATGTCCTATCTACTACATGA...................................................... 20 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................AAGTCATATCTACTACATGC...................................................... 20 2 4 0.50 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................CTGTCATATCTCCTACATGA...................................................... 20 2 5 0.40 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0
............................................................................................ATGTCAGATCTACTACATG....................................................... 19 1 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................ATGTCATATCTATTACATG....................................................... 19 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ACGTCATATCTACTACATGC...................................................... 20 2 8 0.25 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................ATTTCATATCTACTACAT........................................................ 18 1 10 0.20 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ACGTCCTATCTACTACATGAT..................................................... 21 2 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................GCGTGGAGGTCTCGGACG......................... 18 1 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
............................................................................................ATTTCATATCTACTACATGG...................................................... 20 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TATTTCATATCTACTACATGA...................................................... 21 2 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ATGCCATATCTACTCCATG....................................................... 19 2 8 0.13 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................AATTCATATCTACTACATG....................................................... 19 2 20 0.10 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ATGTCCTATCTACTGCATGC...................................................... 20 3 20 0.10 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0
.......................CGACGTGTGGAGGAGGAGGTT.......................................................................................................................... 21 2 12 0.08 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................................ATCTCATATCTAATACATGA...................................................... 20 2 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................ATAGTGGTAAATGACATTCA........................................................................................ 20 2 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...........................................................................................GATTTAATATCTACTACATG....................................................... 20 2 17 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ACTTCATATCTACTACATGA...................................................... 20 2 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................CGGACCCATGAGGTGGAG................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
............................................................................................ATTTCATATCTATTACATGA...................................................... 20 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................GGAGCAGGAGGTCCTGCA..................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..........AGTGAGCTACGGACGACGA......................................................................................................................................... 19 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
mm10 chr11:78072955-78073120 + mmu-mir-144 ATCC-CCTGGCTCACT----------------CCAGG-CCT----GCT-------GCTCA-CCT-CCTCCTCCAGGACCTTGGCTGGGATATCATCATATACTGTAAGTTTGTGATGAGACACTACAGTATAGATGATGTACTAGTCTGGGTACCC-CACCTCCAGAGCCTGCCTGGTTT-GCAGCAGAGATGCAG-AAG
cavPor3 scaffold_32:23622300-23622462 + AC-C-CCTGGCTATCCTGGCC-------------------AGTCCGATTCCT------GA-C----CTCC--TAGGGCTCTGGCTGGGATATCATCATATACTGTAAGTTTGTGATGAGACACTACAGTATAGATGATGTACTAGTCCGGGTACCCCCAGCTCTGGAGTCTGATGAGGCT---GAGTGGGCTGCTGCGAA
dipOrd1 scaffold_41925:8225-8413 - AGCC-TCTGAGTTTTCATAACCACAGTGTTCCCAAAG-CTT----GCTTCCTCGTGGTCA-CCTATCACCTACAGGACTCTGGCTGGGATATCATCATATACTGTAAGTTTGTGATGAGACACTACAGTATAGATGATGTACTAGTCTGGGTACCCC-TGCTCTGAAGCCTGAAGAGG---GCAGGGGAAATGCTGCAAG
hetGal2 Unknown --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ochPri2 scaffold_1030:70721-70905 - AGCCCCCTGGCTCTCTCAGCCTGCAGCGCCCTCCACGGCCT----GTTTCCT------GCAC----CCCCAGCAGGGCCCTGGCTGGGATATCATCGTATACTGTAAGTTTGAGATGAGACACTACAGTATAGATGATGTACTAGTCCGGGCACCCCCATCTCTGAAGCCTGCTGAAGAC-ACAGGGGAGGTGCTGCAAG
oryCun2 chr19:19330228-19330411 + AGCT-CCTGGCTCTCCCTGCCCACAGAACTCTCCATGTCAA----GCTTCCT------GTGT----CCGCGGCAGGACCCTGGCTGGGATATCATCATATACTGTAAGTTTGAGATGAGACACTACAGTATAGATGATGTACTAGTAAGGGCACCCCCAGCTCTGGAACCTGAAGAAGAC-GCAAGGAAGATGCTGCAAG
rn5 chr10:66340639-66340803 + rno-mir-144 ATCCCCCTGGCTCTCT----------------CCCGG-CCT----GCT-------GCTC---CT-CCTCCTCCAGGGCCTTGGCTGGGATATCATCATATACTGTAAGTTTGTGATGAGACACTACAGTATAGATGATGTACTAGTCTGGGTACCCCAA-GACTAGAGCCTGCCTGGTTT-GAAGCAGAGGTGCTG-AAG
speTri2 JH393348:5053854-5054037 - AGCC-CCTAGCTCTCCCTGCCCACTGTGCTCTCCAAG-CCT----GCTTCCT------GAGC----CTCCGGTAGGGCCCTGGCTGGGATATCATCGTATACTGTAAGTTTGTGATGAGACACTACAGTATAGATGATGTACTAGTCCGGGTACCCCCAGCTTTGGATCCTAATGAAGAAAGCAGGGGAGATGCTGCAAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
mm10
ATCC-CCTGGCTCACT----------------CCAGG-CCT----GCT-------GCTCA-CCT-CCTCCTCCAGGACCTTGGCTGGGATATCATCATATACTGTAAGTTTGTGATGAGACACTACAGTATAGATGATGTACTAGTCTGGGTACCC-CACCTCCAGAGCCTGCCTGGTTT-GCAGCAGAGATGCAG-AAGSizeHit CountTotal NormTotalSRR042455
blood		SRR042459
blood		SRR042460
blood		SRR069834
blood		SRR073954
blood		SRR073955
blood		SRR525238
Blood		SRR525237
Blood		SRR042456
bone marrow		SRR042457
bone marrow		SRR042461
bone marrow		SRR042462
bone marrow		GSM317181
brain		GSM317182
brain		GSM361394
brain		GSM361395
brain		GSM361398
brain		GSM361399
brain		GSM361402
brain		GSM361407
brain		GSM361408
brain		GSM361415
brain		GSM361430
brain		GSM510444
brain		SRR037904
brain		SRR037905
brain		SRR037906
brain		SRR037907
brain		SRR038741
brain		SRR038744
brain		SRR039610
brain		SRR042477
brain		SRR060845
brain		SRR206939
brain		SRR206940
brain		SRR206941
brain		SRR206942
brain		SRR345196
brain		SRR345197
brain		SRR345198
brain		SRR345199
brain		SRR345200
brain		SRR345201
brain		SRR345202
brain		SRR345203
brain		SRR345204
brain		SRR345205
brain		SRR345206
brain		SRR345207
brain		SRR037919
embryo		SRR037920
embryo		SRR037921
embryo		SRR037922
embryo		SRR037923
embryo		SRR037924
embryo		SRR037925
embryo		SRR037926
embryo		SRR037927
embryo		SRR037928
embryo		SRR037929
embryo		SRR037930
embryo		SRR391845
embryo		SRR391846
embryo		SRR391847
embryo		SRR391848
embryo		SRR391849
embryo		SRR391850
embryo		SRR391851
embryo		SRR391852
embryo		SRR391853
embryo		SRR116846
epididymis		GSM566419
fibroblast		GSM566420
fibroblast		SRR039183
fibroblast		SRR039184
fibroblast		SRR039185
fibroblast		SRR039186
fibroblast		SRR042475
fibroblast		SRR390297
fibroblast		SRR390298
fibroblast		SRR042484
salivary gland		SRR042476
heart		SRR095853
heart		SRR095855BC1
heart		SRR095855BC10
heart		SRR095855BC2
heart		SRR095855BC3
heart		SRR095855BC4
heart		SRR095855BC5
heart		SRR095855BC6
heart		SRR095855BC7
heart		SRR095855BC8
heart		SRR095855BC9
heart		SRR065052
jejunum		SRR065053
jejunum		SRR065054
jejunum		SRR065055
jejunum		SRR065056
jejunum		SRR042480
kidney		SRR040488
liver		SRR042479
liver		SRR065045
liver		SRR065046
liver		SRR065047
liver		SRR065048
liver		SRR065049
liver		SRR065050
liver		SRR077864
liver		SRR077865
liver		SRR077866
liver		SRR042478
lung		SRR042468
lymph		SRR042469
lymph		SRR042470
lymph		SRR042472
lymph		SRR042473
lymph		SRR039152
muscle		SRR039153
muscle		SRR039154
muscle		SRR042483
muscle		SRR014234
ovary		SRR037896
ovary		SRR037897
ovary		SRR037898
ovary		SRR037899
ovary		SRR042486
ovary		SRR042481
pancreas		SRR065058
pancreas		SRR065059
pancreas		SRR042482
skin		SRR042463
spleen		SRR042465
spleen		SRR042466
spleen		SRR042467
spleen		SRR042471
spleen		SRR042487
spleen		SRR059768
spleen		SRR059769
spleen		SRR059770
spleen		SRR059771
spleen		SRR059772
spleen		SRR059773
spleen		GSM475281
testes		GSM509275
testes		GSM509279
testes		SRR014231
testes		SRR014235
testes		SRR014236
testes		SRR028731
testes		SRR037900
testes		SRR037901
testes		SRR037902
testes		SRR037903
testes		SRR042485
testes		SRR051939
testes		SRR051940
testes		SRR069809
Type_A_spermatogonia		SRR069810
pachytene_spermatocytes		SRR069811
round_spermatid		SRR248523
Thy1+_spermatogonia		SRR248524
Thy1+_spermatogonia		SRR248525
Thy1-_somatic_testes_cells		SRR248526
Thy1-_somatic_testes_cells		SRR248527
spermatogonia		SRR363956
testes		SRR363957
testes		SRR363958
testes		SRR363959
testes		SRR363960
testes		SRR363963
testes		SRR363964
testes		SRR553582
brain		SRR553583
cerebellum		SRR553584
heart		SRR553585
kidney		SRR553602
sertoli_cells		SRR553603
spermatids		SRR553604
spermatocytes		SRR553586
testes		SRR042464
thymus		SRR059765
thymus		SRR059766
thymus		SRR059767
thymus		SRR032476
uterus		SRR032477
uterus		SRR1509747
oocyte		SRR1509748
spermatozoa		SRR1509749
zygote		SRR1509750
spermatogonia		SRR1509751
foetal_primordial_germ_cells		SRR1647947
Dgcr8_WT_leptotene_zygotene_spermatocytes		SRR1647948
Dgcr8_cKO_leptotene_zygotene_spermatocytes		SRR1647949
Dicer_WT_leptotene_zygotene_spermatocytes		SRR1647950
Dicer_cKO_leptotene_zygotene_spermatocytes		SRR1647951
Dgcr8_WT_pachytene_spermatocytes		SRR1647952
Dgcr8_cKO_pachytene_spermatocytes		SRR1647953
Dicer_WT_pachytene_spermatocytes		SRR1647954
Dicer_cKO_pachytene_spermatocytes
...........................................................................................................................TACAGTATAGATGATGTACT.........................................................20163856.0063856000019793911000000000000000002179146655770250238418022362251370257427412528123252166264678556227542911553152495537124369445603548121077868339366350000037150005009381879726139421260116636021012244439716926100000010132142421765025000000000126514121000232110000141001002400000088217320200000006802513010208241984932700000115220000
......................................................................................GGATATCATCATATACTGTAAGT...........................................................................................23152557.0052557000073211430500100000000000000884262051613199571153652162700000011251745316141121493311105105146283314565966509538455491285207216157000000000103502221423413554787718486481436452231261141765349328302633561599300000002372021060261422000000004100010711000011211000001275723184477250000000414715272178582814503323110004014140110020
......................................................................................GGATATCATCATATACTGTAAG............................................................................................22143823.00438230000271561001000000000000008251318411022380241931604136300000126318216214131124754135111775051505957435110212090000000001117035613633545944370633540611107961267296073411158957148211000000003006202111680000000000000961100000211000010217913457590680000000141175310928230122321610001260000034210000
...........................................................................................................................TACAGTATAGATGATGTA...........................................................18136155.0036155000062143000000000000000002337599422637140012131974102262621749030473951016117524223416421891924715609822111286529109726126358583680000000000310201124320397201100334002421451200000000200301613420100000100310000212000000111105001000103766000000008304414110009043190200074210000
...........................................................................................................................TACAGTATAGATGATGTAC..........................................................19131122.00311220000102039600000000000000000025191327679082552870300053261763046203320413121622518725672249974108323524070883417628162695239047222315935642120100011000005006019321511413161320011002124700011414545010020000000001847342285112010000000003015732000597000000161241414700400051161250300000001071722101100392412121003050165210000
...........................................................................................................................TACAGTATAGATGATGTACTA........................................................21117096.0017096000085791712000000000000000583202120102131000044237173119452526125444154215422134441013018921783186327991017130518225018900002010001300010000000231644913570328512127185584271000000001250321210000000000124412000301100001031001100003200000000100001000255276190000000000000
...........................................................................................................................TACAGTATAGATGATGTACTAT.......................................................2215205.0052050000791010000000000000000080321001340000091007112861923455092601012095363287793153743319292900000000002301000000000621112216106202373235451000000000300001400000000026200070000000000000000004710000000000000000542230200000000000
..........................................................................................................................CTACAGTATAGATGATGTACT.........................................................2114399.00439900001313470000000000000000040813111130322551032000000000400002721725961964511319806710274455344303011351006310011000000055513015141200000114600100011034419200000000009036141200000000000672000901000011129800000020331290000000018037120000021114010000031000000
......................................................................................GGATATCATCATATACTGTAAGTT..........................................................................................2413224.00322400004749000000000000000000070220161531422421000000020300245051681031047615393824161117643000000000370110119101445901453453125171381120165000000002000005138000000000000061000000000000000721162190000000022511463403020000030000001000000
..........................................................................................................................CTACAGTATAGATGATGTA...........................................................1912842.002842000013000000000000000004348155010000100138755208174148115702303252232612056562771910024300000000000030700010100200001010000020000000000000000001100000000000000000017000000044100000000411000000001708300000100360000000000000
...........................................................................................................................TACAGTATAGATGATGT............................................................1712647.0026470000424800000000000000000000000520000006514144931651100000000000000104745785952213000000000000001220030113000000000010011000000000000000000000000000000000000000000000000000009600000000901100000000000000000000000
...........................................................................................................................TACAGTATAGATGATGTACTAA.......................................................2212468.0024680000122200000000000000000012000000100000110001801100495022101104822504714552572817161300000000001300000000000010003108013101073180000000000100000100000000002100000000000000000000001100000000000000000200100000000000000
......................................................................................GGATATCATCATATACTGTA..............................................................................................2012335.00233500002438000000000000000001102105106302912472420871169283315211141701210531012010220821351000000000020048311201479161000613020001152475030000001220000002235000000000000080000000000000000839020300000000576123413103040000020000000000000
.......................................................................................GATATCATCATATACTGTAAGT...........................................................................................2212078.002078000085620000000000000000002702101940020010000000000000131121001001105376294000000000000037038293314711043000000800000002030000000000000000000000000000000020000001111000000538722400000000280223510022170000000000000000000
....................................................................................TGGGATATCATCATATACTGTA..............................................................................................2212077.00207700001243370000000000000000030200111856285320020001112060518512210000121022167114754449200000000000040940272317466243110191900852423013400000000000010131080000000010000310000000000000005189880000000033561294203010000030008000000000
..........................................................................................................................CTACAGTATAGATGATGTAC..........................................................2012021.0020210000216300000000000000000237759671947000320100323000200008102425322105543121742372061330173227000000000000119312130010300000020000000019639000000000030202150000000000032000044000000212192000000003710400000000302511800000616000200011000000
......................................................................................GGATATCATCATATACTGTAA.............................................................................................2111824.0018240000614800000000000000000810514811600331035411943443916161492301310111000068101196866616800000000000109139216341071249553009181112201032940000022100000012817000000000000045010000000000012071921571000000027101434900010000090000000000000
.......................................................................................GATATCATCATATACTGTAAGTT..........................................................................................2311536.001536000059176000000000000000004002069700232300000000200003100221023014432017600000000001004913425330125151000000700001005010000000000000000000000000001000000000000010000000481252881000000032601607501010110000000000000000
......................................................................................GGATATCATCATATACTGTAAGTA..........................................................................................2411482.001482000024138400000000000000000100002420032200000000000000120032100009141711715638460000000000010501736612000101000001010000000000000000000000000000000000000000000000000000073951440000000016721324100000000000600000000000
........................................................................................ATATCATCATATACTGTAAGT...........................................................................................2111411.0014110000660000000000000000000000020000000000000000000022000001010000020101000000000000020991391311000000001000000000000000000000000000000000000000000000000000000000001013000000004028400010000000000000000000
...........................................................................................................................TACAGTATAGATGATGTACTAAA......................................................2311137.00113700004324000000000000000002000000000000000000000000007510030000030318848520201836200000000000000000000000000000200000000320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................TACAGTATAGATGATGTACTT........................................................2111133.001133000015310000000000000000060140010220000083351311001312121592118100111159696145447087500000000000001000000000102001919605734531574100000000007000002100000000581000170000000000000000000200000000000000000934160000000000000
....................................................................................TGGGATATCATCATATACTGT...............................................................................................211976.00976000021214000000000000000001003314443031100011100231301550032012002416231209945491210000000000003311210301000100029100130111121420000000002010042010000000010000611000000200000003115250000000046112600000312040000000000000
..........................................................................................................................CTACAGTATAGATGATGTACTAT.......................................................231931.0093100001418000000000000000001000003000000000000000000241815404300000218202277434916814900000000000010000000000000000200000101000000000000000000100000000000000000000000000000000000200000000000000000000010000000000000
..........................................................................................................................CTACAGTATAGATGATGTACTA........................................................221696.006960000183600000000000000000200000000000000000000000009385060230001096166124221310153228000010000000100000000000000001500000001130000000000100000000000000000000000000000000000000000100000000000000000000000100000000000
........................................................................................ATATCATCATATACTGTAAG............................................................................................201656.0065600000100000000000000000000000000000000000000000000000000000000000000000000000000000121212431258101000000000000000010000000000000000000000000000000000000000000000000002000000000301200000000000000000000000
......................................................................................GGATATCATCATATACTGTAAT............................................................................................221596.00596000040000000000000000001000000030020000000000000000000000000000000002000000000000102031251080000001000000000000000000000000000000000000000000000000000000000000000000000000548010200000000000000000000000
...........................................................................................................................TACAGTATAGATGATG.............................................................163551.671655000000000000000000000000000000000000012511011103116000000000000057326652625781311600000000000005164232510000000000000000000000000000000000000000000000000000000000000000000010273900000000360111500020000000000000000000
......................................................................................GGATATCATCATATACTGTAAGA...........................................................................................231426.004260000891260000000000000000000000010100100000000020000021003121210021101514000000000010018022134210020011000100000000000000000000001000000000000000000000000000000000001622000000004003411000100000002012000000000
..........................................................................................................................CTACAGTATAGATGATGT............................................................181422.0042200002200000000000000000200101000000001615910100000011000120001161465800012000000000000017000000000000000001200000001000000000000000000000000000000000010000000000000000002200000000001000000404000000000000000
..........................................................................................................................CTACAGTATAGATGATGTACTAA.......................................................231401.0040100001500000000000000000000000000000000000000000001117000000000978113417206411300000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................ACAGTATAGATGATGTACT.........................................................191387.0038700004380000000000000000031287311000000000000000000042135141440366229387102200000000000000212002450000000070000000387580000000000006330000000000000000010000000130000000000500000000000000000100000000000000000
.......................................................................................GATATCATCATATACTGTAAG............................................................................................211369.00369000023000000000000000000200000011001000040003010000000003000100200000021000000000000027685127043750000020000000000000000000000000000000000000000000000000000100000000052100000000360333200020000000000000000000
......................................................................................GGATATCATCATATACTGTAAGTTT.........................................................................................251345.00345010054118000000000000000000000102000020000000000000001000000010076593155371000000000000150040100200000000000000000000000000000000000000000000000000000000000000000000001732000000001903110000000000000000000000
....................................................................................TGGGATATCATCATATACTGTAA.............................................................................................231335.00335000042500000000000000000000112310124120000000000000110000000108641428183821000000000000120302111200001018001100000200000000000000012240000000000000200000000000010000122231000000061030400010000020000000000000
....................................................................................TGGGATATCATCATATACTGTAATC...........................................................................................251313.003130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000078221853700000000
...........................................................................................................................TACAGTATAGATGATGTACTATC......................................................231266.002660000430000000000000000000000000000000000000000000001000000000531211002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000206219700000000
...........................................................................................................................TACAGTATAGATGATGTACTAG.......................................................221262.002620000242600000000000000000601200000000000000001600002512226420110221523291914110000000000000000000000000100022100000104010000000000000000000000000002000010000000000000000000000000000000000000101000000000000000
.........................................................................................TATCATCATATACTGTAAGT...........................................................................................201256.002560000188000000000000000000000015488000000000000000000011000000000000000000000000000000060000013000000002000000000000000000000000000000000000000000000000000000000000035640000000015029200000000000000000000000
..........................................................................................................................CTACAGTATAGATGATGTACTAAA......................................................241256.002560000210000000000000000000000000000000000000000000011100000000594713710014100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TGGGATATCATCATATACTG................................................................................................201249.002490000050000000000000000090231131001101013031030010000016212220104446010000000000010013172060662001000411001001241100000000000000003112000000003000011000000100000000001100000000804300000412030000000000000
......................................................................................GGATATCATCATATACTGTAAGTTATC.......................................................................................271209.002090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008810103800000000
.............................................................................................................................CAGTATAGATGATGTACT.........................................................181202.0020200001500000000000000000331681010000000000000000000518372007523814212220101000000000000000000000000000000100000000110000000000001310000000000000000000000000201000000000400000000000000000100000000000000000
......................................................................................GGATATCATCATATACTGT...............................................................................................191196.0019600009440000000000000000030000000000001002511600002200010000001102027106112000000000000019000020200001100100101000020000000000001000000000000000000050000000000000000002700000000705000000200000000000000000
...........................................................................................................................TACAGTATAGATGATGTACC.........................................................201172.0017200006400000000000000000201100000000000010210000001010233013104165100010000000000000000000000000000001400000001421400000000006200010000000000001000000000000000000000000000000000000000000202000000000000000
......................................................................................GGATATCATCATATACTGTAAGC...........................................................................................231170.0017000003167000000000000000001000002010000000000000000000000100002013011011100000000000001100001010001001010010000001000000000000000001000000000000001000000000000000000104000000001305400000000000000000000000
............................................................................................................................ACAGTATAGATGATGTACTA........................................................201166.001660000122900000000000000000401010000000000000000000000172840110010022010192302100000000000000000000000000000100000004020000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
....................................................................................TGGGATATCATCATATACTGTAAG............................................................................................241163.0016300003110000000000000000000000110002000000000000000000000000000100000221000000000000040121520700000000000000010000000000000000000000000000000000000000000000000000013190000000049230300000000000000000000000
............................................................................................................................ACAGTATAGATGATGTAC..........................................................181159.001590000180000000000000000025368101000000000000000000002422872038112334311000000000000002031004501000000100000006040000000000004300000000000010000010000000342000000000300000000000000000001000000000000000
...........................................................................................................................TACAGTATAGATGATGTACTAAG......................................................231150.001500000134000000000000000000011000000000000000000000001400320000043164533201000000000000000010000000000000200000000020000000000000000000000000000000000000000000000000002000000000100000000000000000000000000
..........................................................................................................................CTACAGTATAGATGATG.............................................................171147.001470000110000000000000000000000000000000050061100000000000000000322346010000000000000000800000000000000000000000000000000000000000000000000000000000000000000000000000011700000000301000000000000000000000000
...........................................................................................................................TACAGTATAGATGATGTACTATA......................................................231145.001450000580000000000000000020000000000000000000010000114000000010261424235110000000000000000000000000000000000000000000000000000010000000000000000000100000000000000000000000000000000000000000003617000000000
..........................................................................................................................CTACAGTATAGATGATGTACTT........................................................221133.001330000100000000000000000000001000000000000000000000104205200000242329303511000000000000000000000000000001700000004030000000000000000000000000001000000000000000000000000100000000000000000101000000000000000
......................................................................................GGATATCATCATATACTGTAATC...........................................................................................231125.0012500000100000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000162058200000000
........................................................................................ATATCATCATATACTGTAAGTT..........................................................................................221119.0011900000400000000000000000000000000000000000000000010000000000000000000000000000000000105100010500000000000000000000000000000000000000000000000000000000000000000000000100000000001000000000000000000000000
...................................................................TCCTCCAGGACCTTGGCTG..................................................................................................................191115.001150000298000000000000000000000000000000000000000000000000000000010021020000000000000000000000000000000800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...........................................................................................................................TACAGTATAGATGATGTACTTT.......................................................222108.5021700001300000000000000000100000002000000000000001011310000000003415363515110200000000000000000000000000010218011021053150000000000100000100000000000000030000000000000000000000000000000000000000100000000000000
.......................................................................................GATATCATCATATACTGTAAGTTATC.......................................................................................261106.00106000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001611271600000000
...........................................................................................................................TACAGTATAGATGATGTACTAC.......................................................221105.001050000350000000000000000000000000000000000000000000026200000000271115187300000000000000000000000000000000400000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................TACAGTATAGATGATGTAA..........................................................193101.0030300008900000000000000000161444000000000330173102204310100445322621010144210100000000000000100001020200000070000000131240000000000300430000000000001000002000000002100000000001000000001010000001218020000000000000
......................................................................................GGATATCATCATATACTGTAAGG...........................................................................................23196.009600001922000000000000000000000010000000000000001000000000020001001000112230000000000006010021010010003000000000000000000000000001100000000000000000000000000000000018900000000203000000000000000000000000
...........................................................................................................................TACAGTATAGATGATGTACTAGT......................................................23183.0083000020140000000000000000010000000000000000000000000152101200000824200000000000000000000000000000000001000000000050000000000000100000000000000000000000000000000000001000000000000000000102000000000000000
...........................................................................................................................TACAGTATAGATGATGTACTAAC......................................................23181.00810000124000000000000000000000000000000000000000000000000010000019142900100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................GGATATCATCATATACTGTAAGTTA.........................................................................................25181.008100002626000000000000000000000000000000000000000000000000000000051131135300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000301000000000
...........................................................................................................................TACAGTATAGATGATGTACTC........................................................21180.008000001814000000000000000001000000000000001002000000001130000000014254200000000000000000000000000000000800000003330000000000200000000000000000000000000001000000000000000000000000000000100000000000000000
...........................................................................................................................TACAGTATAGATGATGTACTAGA......................................................23177.007700005300000000000000000000000000000000000000000000010000000001781944301100000000000000000000000000000000000004150000000000001000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................CTACAGTATAGATGATGTACTATC......................................................24176.007600000000000000000000000000000000000000000000000000000000000001020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000043072300000000
....................................................................................TGGGATATCATCATATACTGTAATA...........................................................................................25176.007600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000225045400000000
...........................................................................................................................TACAGTATAGATGATGTACA.........................................................20173.007300001200000000000000000300200000000000000000000000222011000115102300001000000000000000000000000000005000000001800000000001400010000000000001000000000000000000000000000000000000000000101000200000000000
...........................................................................................................................TACAGTATAGATGATGTAT..........................................................19461.50246000059000000000000000001203220010000005079431000011000001041394213812000111000000000000000000001000000008000000030100000000000403000000000000001100070000000311000000001100000000100100000926030000000000000
.........................................................................................TATCATCATATACTGTAAGTT..........................................................................................21159.005900000100000000000000000000008920000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000121300000000812000010000000000000000000
..........................................................................................ATCATCATATACTGTAAGT...........................................................................................19155.00550000550000000000000000000000043000000000000000000010100000000104221001000000000000000000010000000001000000000000000000000000000000000000000000000000000000000000021100000000304100020000000000000000000
....................................................................................TGGGATATCATCATATACT.................................................................................................19154.0054010020100000000000000001010000000000021000000000000000000000035101000000000000009000000000000000001100411020000000020007000000020000000000000010000000000000000000000000000000000000200020000000000000
.......................................................................................GATATCATCATATACTGTAAGTTT.........................................................................................24154.00540000513000000000000000000000000000010000000000000000000000001012300000000000000000001001010200000000000000000000000000000000000000000000000000000000000000000000006900000000304100000000000000000000000
...........................................................................................................................TACAGTATAGATGATGTACTAAAA.....................................................24352.00156000083000000000000000000000000000000000000000000000200000000031267602502100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................CTACAGTATAGATGATGTACTATA......................................................24151.0051000002000000000000000000000000000000000000000000000000000000010816000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100300000000
............................................................................................................................ACAGTATAGATGATGTA...........................................................17151.0051000000000000000000000000000032200000000000000000000000000000010141201000000000000000020010000200000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000
..........................................................................................................................CTACAGTATAGATGATGTACTTT.......................................................23150.005000001000000000000000000000000000100000000000000000100000000001013923321000000000000000000000000000001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................GGATATCATCATATACTGTAATA...........................................................................................23148.004800004200000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000026012000000000
.............................................................................................................................CAGTATAGATGATGTACTA........................................................19147.00470000119000000000000000000000100000000000000000000014821010000003112000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000
........................................................................................................................CACTACAGTATAGATGATGTACTA........................................................24145.00450000144000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................GGATATCATCATATACTG................................................................................................18144.0044000022000000000000000001000020000010000310000000000000010001000000100200000000005001000000100000000000100000000000000000000000000000100000000000000000000000001002200000000504100000000010200000000000
.............................................................................................................................CAGTATAGATGATGTAC..........................................................17143.00430000727000000000000000000000001000000000000000000000000000000002020100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101100000000000000000000000
...........................................................................................................................TACAGTATAGATGATGTACG.........................................................20143.00430000120000000000000000000010000000000010000000000010006101011003000000000000000000000000000000000000400000002260000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
......................................................................................GGATATCATCATATACTGTAAGTTATA.......................................................................................27142.004200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000019319100000000
......................................................................................GGATATCATCATATACTGTAAGTAA.........................................................................................25141.00410000145000000000000000000000000000000000000000000000000000000012141005300000000000000000000000000000001100000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000
...........................................................................................TCATCATATACTGTAAGT...........................................................................................18140.00400000560000000000000000010000000000000000000000000021001110000000100001000000000000000000000100000001000000000000000000000000000000000000000000000000000000000000011300000000301000000000000000000000000
....................................................................................TGGGATATCATCATATACTGTATC............................................................................................24139.003900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000029010000000000
....................................................................................TGGGATATCATCATATACTGTAT.............................................................................................23134.00340000412000000000000000000001000000000000000000000000000000000000032100000000000000001000000000000000200000100000000000000000000000000000000000000000000000000000001100000000301000000100000000000000000
........................................................................................ATATCATCATATACTGTA..............................................................................................18133.00330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................CTACAGTATAGATGATGTACATC.......................................................23432.0012800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000092729000000000
....................................................................................TGGGATATCATCATATACTGTAG.............................................................................................23132.00320000010000000000000000000000000000000000000000000000000000000000000010000000000000000011200000000000000000000000000000000000000000000000000000000000000000000000023000000001207200000000000000000000000
.............................................................................................ATCATATACTGTAAGT...........................................................................................16131.00310000000000000000000000000000000000000000000000000000000000000004101010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000131000000000503010000000000000000000000
......................................................................................GGATATCATCATATACT.................................................................................................17131.00310000108000000000000000000000010000000000220000000000000000000013000000000000000000001000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................AGTATAGATGATGTACTA........................................................18130.00300000210000000000000000002000000000000000000000000001210000000000100201000000000000000000000000000000800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
cavPor3
AC-C-CCTGGCTATCCTGGCC-------------------AGTCCGATTCCT------GA-C----CTCC--TAGGGCTCTGGCTGGGATATCATCATATACTGTAAGTTTGTGATGAGACACTACAGTATAGATGATGTACTAGTCCGGGTACCCCCAGCTCTGGAGTCTGATGAGGCT---GAGTGGGCTGCTGCGAASizeHit CountTotal NormTotal
No Reads
dipOrd1
AGCC-TCTGAGTTTTCATAACCACAGTGTTCCCAAAG-CTT----GCTTCCTCGTGGTCA-CCTATCACCTACAGGACTCTGGCTGGGATATCATCATATACTGTAAGTTTGTGATGAGACACTACAGTATAGATGATGTACTAGTCTGGGTACCCC-TGCTCTGAAGCCTGAAGAGG---GCAGGGGAAATGCTGCAAGSizeHit CountTotal NormTotal
No Reads
hetGal2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
ochPri2
AGCCCCCTGGCTCTCTCAGCCTGCAGCGCCCTCCACGGCCT----GTTTCCT------GCAC----CCCCAGCAGGGCCCTGGCTGGGATATCATCGTATACTGTAAGTTTGAGATGAGACACTACAGTATAGATGATGTACTAGTCCGGGCACCCCCATCTCTGAAGCCTGCTGAAGAC-ACAGGGGAGGTGCTGCAAGSizeHit CountTotal NormTotal
No Reads
oryCun2
AGCT-CCTGGCTCTCCCTGCCCACAGAACTCTCCATGTCAA----GCTTCCT------GTGT----CCGCGGCAGGACCCTGGCTGGGATATCATCATATACTGTAAGTTTGAGATGAGACACTACAGTATAGATGATGTACTAGTAAGGGCACCCCCAGCTCTGGAACCTGAAGAAGAC-GCAAGGAAGATGCTGCAAGSizeHit CountTotal NormTotalGSM1528820
Adult_testes		GSM1528821
Adult_testes_Mili_IP
...........................................................................................................................TACAGTATAGATGATGTACT.........................................................20111.0011101
...........................................................................................................................TACAGTATAGATGATGTAC..........................................................19111.001165
......................................................................................GGATATCATCATATACTGTAAGT...........................................................................................2318.00880
...........................................................................................................................TACAGTATAGATGATGTACTAT.......................................................2217.00770
............................................................................................................................ACAGTATAGATGATGTACTT........................................................2017.00770
...........................................................................................................................TACAGTATAGATGATGTACTT........................................................2116.00660
......................................................................................GGATATCATCATATACTGTAA.............................................................................................2114.00422
.....................................................................CGGCAGGACCCTGGCTG..................................................................................................................1714.00440
...........................................................................................................................TACAGTATAGATGATGTACTTT.......................................................2223.00660
...........................................................................................................................TACAGTATAGATGATGTA...........................................................1813.00312
...........................................................................................................................TACAGTATAGATGATGTACTA........................................................2113.00330
..........................................................................................................................CTACAGTATAGATGATGTAC..........................................................2011.00110
...........................................................................................................................TACAGTATAGATGATG.............................................................1621.00211
..........................................................................................................................CTACAGTATAGATGATGTA...........................................................1911.00110
............................................................................................................................ACAGTATAGATGATGTACTAT.......................................................2111.00110
...........................................................................................................................TACAGTATAGATGATGTACGT........................................................2111.00110
...........................................................................................................................TACAGTATAGATGATGT............................................................1711.00101
...........................................................................................................................TACAGTATAGATGAT..............................................................1540.25110
...............................................................................................................................GTATAGATGATGTACTT........................................................17200.15330
rn5
ATCCCCCTGGCTCTCT----------------CCCGG-CCT----GCT-------GCTC---CT-CCTCCTCCAGGGCCTTGGCTGGGATATCATCATATACTGTAAGTTTGTGATGAGACACTACAGTATAGATGATGTACTAGTCTGGGTACCCCAA-GACTAGAGCCTGCCTGGTTT-GAAGCAGAGGTGCTG-AAGSizeHit CountTotal NormTotalGSM1528817
Adult_testes		GSM1528818
Adult_testes_Mili_IP		GSM1528819
10dpp_testes
......................................................................................GGATATCATCATATACTGTAA.............................................................................................211213.00213000
...........................................................................................................................TACAGTATAGATGATGTAC..........................................................191127.00127000
...........................................................................................................................TACAGTATAGATGATGTA...........................................................18197.0097000
...........................................................................................................................TACAGTATAGATGATGTACT.........................................................20149.0049000
...........................................................................................................................TACAGTATAGATGATGTACTA........................................................21129.0029000
......................................................................................GGATATCATCATATACTGTAAG............................................................................................22120.0020000
.......................................................................................GATATCATCATATACTGTAAG............................................................................................21112.0012000
..........................................................................................................................CTACAGTATAGATGATGTACT.........................................................21111.0011000
..........................................................................................................................CTACAGTATAGATGATGTAC..........................................................20110.0010000
..........................................................................................................................CTACAGTATAGATGATGTA...........................................................1917.007000
.......................................................................................GATATCATCATATACTGTAA.............................................................................................2016.006000
............................................................................................................................ACAGTATAGATGATGTAC..........................................................1815.005000
...........................................................................................................................TACAGTATAGATGATGT............................................................1715.005000
......................................................................................GGATATCATCATATACTGTA..............................................................................................2014.004000
..........................................................................................................................CTACAGTATAGATGATGTACTA........................................................2213.003000
............................................................................................................................ACAGTATAGATGATGTACT.........................................................1913.003000
...........................................................................................................................TACAGTATAGATGATG.............................................................1622.505000
...........................................................................................................................TACAGTATAGATGATGTACTAA.......................................................2212.002000
...........................................................................................................................TACAGTATAGATGATGTACTT........................................................2112.002000
......................................................................................GGATATCATCATATACTGTAAGT...........................................................................................2312.002000
....................................................................................TGGGATATCATCATATACTGT...............................................................................................2112.002000
............................................................................................................................ACAGTATAGATGATGTACTA........................................................2012.002000
............................................................................................................................ACAGTATAGATGATGTA...........................................................1712.002000
...........................................................................................................................TACAGTATAGATGATGTACTAAA......................................................2311.001000
......................................................................................GGATATCATCATATACTGT...............................................................................................1911.001000
.............................................................................................................................CAGTATAGATGATGTA...........................................................1611.001000
..........................................................................................................................CTACAGTATAGATGATGTACTAAA......................................................2411.001000
.......................................................................................GATATCATCATATACTGTAAGT...........................................................................................2211.001000
..........................................................................................................................CTACAGTATAGATGATGTACTAT.......................................................2311.001000
.............................................................................................................................CAGTATAGATGATGTAC..........................................................1711.001000
......................................................................................GGATATCATCATATACTGTAC.............................................................................................2120.501000
speTri2
AGCC-CCTAGCTCTCCCTGCCCACTGTGCTCTCCAAG-CCT----GCTTCCT------GAGC----CTCCGGTAGGGCCCTGGCTGGGATATCATCGTATACTGTAAGTTTGTGATGAGACACTACAGTATAGATGATGTACTAGTCCGGGTACCCCCAGCTTTGGATCCTAATGAAGAAAGCAGGGGAGATGCTGCAAGSizeHit CountTotal NormTotal
No Reads

Generated: 06/17/2015 at 01:08 PM