ID:

mmu-mir-1195

 Coordinate:

chr17:70860503-70860600 -

 Confidence:

Known

 Type:

Unknown

 [View on miRBase]
[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-48.5 -48.4 -47.5 -47.5
mature
  1. chr17:70860558-70860580 -
  2. chr2:144214277-144214299 +
star

Sense Strand Reads

AGGCAGCCGGGCTGTGGTGGCGCTCGCCTTTAATCCCAGCACTTGGGAGGTAGAGGCAGGCAGATCTCTGTGAGTTCGAGGCCAGCCTGCTCAACAGAATGAGTTCTAGGGCAGCCAGGAACACACAGAGAAACCCTGTCTCAAGAAGGTAAAAAGTAAAAAAAAAAAAAAAAAGAAAAAGTAAAAAAGAAGAAGAAA
***********************************.......(((.......((((((((....((((((((.((((..(((..((((((((........))))....)))).)))..)))).))))))))...))))))))..............)))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR069809
testes		 GSM475281
testes		 SRR248524
testes		 SRR014231
testes		 SRR248525
testes		 SRR248523
testes		 SRR069810
testes		 SRR248526
testes		 SRR014235
testes		 SRR014236
testes		 SRR391847
embryo		 SRR051940
testes		 SRR248527
testes		 SRR553604
testes		 SRR037901
testes		 SRR037902
testes		 SRR553603
testes		 SRR037900
testes		 SRR391845
embryo		 SRR391848
embryo		 SRR553586
testes		 SRR059765
thymus		 SRR037924
embryo		 SRR037928
embryo		 SRR391846
embryo		 SRR037925
embryo		 SRR345200
brain		 SRR069811
testes		 SRR042485
testes		 SRR391851
embryo		 SRR037922
embryo		 SRR391852
embryo		 SRR037929
embryo		 SRR345201
brain
......................................................................TGAGTTCGAGGCCAGCCTGCTCA......................................................................................................... 23 0 2 162.50 325 160 46 17 23 23 19 6 8 6 3 0 2 2 2 2 2 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGAGGCCAGCCTGCTCAA........................................................................................................ 24 0 2 29.50 59 51 1 0 1 1 0 2 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................AGTTCGAGGCCAGCCTGCTCA......................................................................................................... 21 0 2 12.50 25 10 3 2 0 4 1 2 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGAGGCCAGCCTGCTC.......................................................................................................... 22 0 20 10.30 206 0 0 197 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
......................................................................TGAGTTCGAGGCCGGCCTGCTCA......................................................................................................... 23 1 6 8.17 49 45 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGAGGCCAGCCTGCTCAT........................................................................................................ 24 1 8 7.63 61 50 2 0 3 0 1 0 1 1 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGAGGCCGGCCTGCTCAA........................................................................................................ 24 1 4 6.00 24 23 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGAGGCCAGCCTGCTAA......................................................................................................... 23 1 20 5.55 111 90 1 2 0 0 0 2 0 6 6 2 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................TGAGTTCGAGGCCAGCCTGCTAAA........................................................................................................ 24 1 16 4.56 73 42 1 0 18 0 5 0 1 0 1 1 0 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0
......................................................................TGAGTTCGAGGCCAGCCTGCTCAAA....................................................................................................... 25 1 14 3.43 48 20 1 1 16 0 0 1 0 1 2 0 0 1 0 2 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0
......................................................................TGGGTTCGAGGCCAGCCTGCTCA......................................................................................................... 23 1 9 3.00 27 7 0 3 2 1 10 0 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGGGGCCAGCCTGCTCA......................................................................................................... 23 1 4 2.50 10 1 0 1 2 1 0 0 0 1 3 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................AGTTCGAGGCCAGCCTGCTCAA........................................................................................................ 22 0 2 2.50 5 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGAGGCCGGCCTGCTCAT........................................................................................................ 24 2 17 2.06 35 34 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................GAGTTCGAGGCCAGCCTGCTCA......................................................................................................... 22 0 2 2.00 4 0 1 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGAGGCCAGCCTGCTCAAC....................................................................................................... 25 0 2 2.00 4 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGAGGCCAGCCTGCTCAAT....................................................................................................... 25 1 20 1.30 26 0 4 0 21 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGAGGCCAGCCTGCTCAAGA...................................................................................................... 26 1 5 1.00 5 3 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGAGGCCAGCCTGCTCAAG....................................................................................................... 25 1 8 1.00 8 5 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGAGGCCAGCCTGCTTAA........................................................................................................ 24 1 20 0.90 18 10 0 2 5 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGAGGCCAGCCTGCTCATC....................................................................................................... 25 1 5 0.60 3 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................GAGTTCGAGGCCAGCCTGCTC.......................................................................................................... 21 0 20 0.60 12 0 0 0 0 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGGGGCCGGCCTGCTCAA........................................................................................................ 24 2 7 0.57 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGGGGCCAGCCTGCTCAA........................................................................................................ 24 1 4 0.50 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGTGAGTTCGAGGCCAGCCTGCTCA......................................................................................................... 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGTGAGTTCGAGGCCAGCCTGCTCAAA....................................................................................................... 27 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....GCCGGGCTGTGGTGGCGCTCGCCTT........................................................................................................................................................................ 25 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGCGTTCGAGGCCAGCCTGCTCA......................................................................................................... 23 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................GAGTTCGAGGCCAGCCTGCTCAA........................................................................................................ 23 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................AGTTCGAGGCCAGCCTGCTCAAAAGCAT.................................................................................................. 28 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGAGGCCAGCCTGCTCATA....................................................................................................... 25 2 20 0.45 9 8 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGGGTTCGAGGCCAGCCTGCTCAT........................................................................................................ 24 2 19 0.42 8 6 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGAGGCCAGCCTGCTTAAT....................................................................................................... 25 2 20 0.40 8 0 0 0 7 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGGGTTCGAGGCCAGCCTGCTCAA........................................................................................................ 24 1 8 0.38 3 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................AGTTCGAGGCCAGCCTGCTCAT........................................................................................................ 22 1 8 0.38 3 0 0 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGAGGCCAGCCTGCTCAAAA...................................................................................................... 26 1 8 0.38 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......CGGGCTGTGGTGGCGCTCGCC.......................................................................................................................................................................... 21 0 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........GCGCTGTGGTGGCGCTCGCCTTA....................................................................................................................................................................... 23 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGAGGCCCGCCTGCTCA......................................................................................................... 23 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TTAGTTCGAGGCCAGCCTGCTCA......................................................................................................... 23 1 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................TTCGAGGCCAGCCTGCTCAAC....................................................................................................... 21 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................GAGTTCGAGGCCCGCCTGCTCA......................................................................................................... 22 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGGGGCCAGCCTGCTCAT........................................................................................................ 24 2 12 0.33 4 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................AGTTCGAGGCCGGCCTGCTCA......................................................................................................... 21 1 6 0.33 2 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGGGTTCGGGGCCAGCCTGCTCA......................................................................................................... 23 2 14 0.29 4 0 0 0 0 1 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGAGGCCGGCCTGCTCAAA....................................................................................................... 25 2 18 0.28 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGACGCCAGCCTGCTCA......................................................................................................... 23 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGAGGCCAGCCTGCTCAAGT...................................................................................................... 26 2 20 0.25 5 4 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................GAGTTCGGGGCCAGCCTGCTCA......................................................................................................... 22 1 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................AGTTCGAGGCCGGCCTGCTCAA........................................................................................................ 22 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGAGGCAAGCCTGCTCA......................................................................................................... 23 1 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................GAGTTCGAGGCCAGCCTGCTCAAG....................................................................................................... 24 1 8 0.25 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGAGGCCGGCCTGCTAAA........................................................................................................ 24 2 18 0.22 4 3 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGTGAGTTCGAGGCCAGCCTGCTAAA........................................................................................................ 26 1 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGAGGCCAGCCTGCTCATAA...................................................................................................... 26 2 20 0.20 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................GAGTTCGAGGCCAGCCTGCTCAAGA...................................................................................................... 25 1 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGAGGCCAGCCTGCTCATCA...................................................................................................... 26 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGGGGCCAGCCTGCTAAA........................................................................................................ 24 2 20 0.20 4 2 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGGGGCCGGCCTGCTCAT........................................................................................................ 24 3 20 0.20 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGGGTTCGAGGCCGGCCTGCTCAA........................................................................................................ 24 2 11 0.18 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGTGAGTTCGAGGCCAGCCTG............................................................................................................. 21 0 20 0.15 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGAGGCCAGCCTGCTCAG........................................................................................................ 24 1 20 0.15 3 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGAGGCCAGCCTGCTCAC........................................................................................................ 24 1 20 0.15 3 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGAGGCCAGCCTGCTCAAAT...................................................................................................... 26 2 20 0.15 3 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGGGTTCGAGGCCAGCCTGCTCAG........................................................................................................ 24 2 20 0.15 3 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................GGCCCGCCTGCTCAACAGA.................................................................................................... 19 1 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGAGGCCAGCCTGCTCAACT...................................................................................................... 26 1 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGAGGCCGGCCTGCTCAAGA...................................................................................................... 26 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGGGTTCGAGGCCGGCCTGCTCA......................................................................................................... 23 2 14 0.14 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................CTGTGAGTTCGAGGCCAGCCTGCTTA......................................................................................................... 26 1 8 0.13 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.GGCAGCCGGGTTGTGGTG................................................................................................................................................................................... 18 1 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................TGAGTTCGAGGCCAGCCGGCTCAT........................................................................................................ 24 2 9 0.11 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGGGGCCAGCCTGCTCAAA....................................................................................................... 25 2 18 0.11 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGGGGCCGGCCTGCTCA......................................................................................................... 23 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................TGAGCTCGAGGCCAGCCTGCTCA......................................................................................................... 23 1 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................AGTTCGAGGCCAGCCTGCTCAAT....................................................................................................... 23 1 20 0.10 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGAGGCCAGCCTGCTAAAC....................................................................................................... 25 1 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGAGGCCAGCCTGCT........................................................................................................... 21 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0
......................................................................TGAGTTCGAGGCCGGCCTGCTCAAAA...................................................................................................... 26 2 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGAGGACAGCCTGCTCA......................................................................................................... 23 1 10 0.10 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGAGGCCGGCCTGCTTAA........................................................................................................ 24 2 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGAGGCCGGCCTGCTCAAG....................................................................................................... 25 2 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGGGTTCGAGGCCAGCCTGCTAAA........................................................................................................ 24 2 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGAGGCCGGCCTGCTCATC....................................................................................................... 25 2 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................AAAGAAAAAGTAAAAAAGAAGC..... 22 1 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGCGGCCATCCTGCTCACCAGA.................................................................................................... 28 3 13 0.08 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGGGTTCGGGGCCAGCCTGCTCAA........................................................................................................ 24 2 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................GAGTTCGAGGCCAGCCTGCTCAAA....................................................................................................... 24 1 14 0.07 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................CGAGTTCGAGGCCGGCCTGCTCA......................................................................................................... 23 2 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TAAGTTCGAGGCCAGCCTGCTCA......................................................................................................... 23 1 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGAGGCCAGCCTGCTGAA........................................................................................................ 24 1 15 0.07 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................GAGTTCGAGGCCAGCCTGCTAAA........................................................................................................ 23 1 16 0.06 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................TTCGAGGCCAGCCTGCTCAAA....................................................................................................... 21 1 16 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGGGTTCGCGGCCTGCCTGCTCA......................................................................................................... 23 3 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TTAGTTCGAGGCCAGCCTGCTCAAA....................................................................................................... 25 2 16 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGCGGCCGGCCTGCTCAT........................................................................................................ 24 3 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................CTGTGAGTTCGAGGCCAGCCTG............................................................................................................. 22 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGGGTTCGAGGCCGGCCTGCTCAAAA...................................................................................................... 26 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................CGAGGCCAGCCTGCTC.......................................................................................................... 16 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGAGACCAGCCTGCTCAAAA...................................................................................................... 26 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGAGGCCAGCCTGCTGA......................................................................................................... 23 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGGGGCCGGCCTGCTCAAA....................................................................................................... 25 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................AGGCAGGCAGATCTCTGTGAGTTCG........................................................................................................................ 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................AGTTCGAGGCCAGCCTGCTCAC........................................................................................................ 22 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGGGTTCGAGGCCAGCCTGCTCATA....................................................................................................... 25 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................AGTTCGAGGCCAGCCTGCTC.......................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGGGTTCGAGGCCAGCCTGCTCAAA....................................................................................................... 25 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGAGGCCGGCCTGCTCAAGT...................................................................................................... 26 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGAGGCTAGCCTGCCCAAGAGA.................................................................................................... 28 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGAGGCCAGCCTGCTTATC....................................................................................................... 25 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGAGGCCAGCCTGCTCAATT...................................................................................................... 26 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGGGGCCAGCCTGCTCAAT....................................................................................................... 25 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................GAGTTCGAGGCCAGCCTGCTCAC........................................................................................................ 23 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....AGCCGGGCTGTGGTGGCG................................................................................................................................................................................ 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
......................................................................TGAGTTCGGGGCCGGCCTGCTAAA........................................................................................................ 24 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................TTCGAGGCCAGCCTGCTC.......................................................................................................... 18 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGAGTTCGGGGCCAGCCTGCTCAG........................................................................................................ 24 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TCCGTCGGCCCGACACCACCGCGAGCGGAAATTAGGGTCGTGAACCCTCCATCTCCGTCCGTCTAGAGACACTCAAGCTCCGGTCGGACGAGTTGTCTTACTCAAGATCCCGTCGGTCCTTGTGTGTCTCTTTGGGACAGAGTTCTTCCATTTTTCATTTTTTTTTTTTTTTTTCTTTTTCATTTTTTCTTCTTCTTT
***********************************.......(((.......((((((((....((((((((.((((..(((..((((((((........))))....)))).)))..)))).))))))))...))))))))..............)))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR248526
testes		 SRR069809
testes		 SRR042485
testes		 SRR248525
testes		 SRR248523
testes		 SRR248527
testes		 SRR248524
testes		 SRR553586
testes		 SRR553603
testes		 SRR069810
testes		 SRR553604
testes		 GSM475281
testes		 SRR069811
testes		 SRR391851
embryo		 SRR014235
testes		 SRR051939
testes		 SRR039154
muscle		 SRR391847
embryo		 GSM509275
testes		 SRR206941
brain		 SRR014231
testes		 SRR014236
testes		 SRR039153
muscle		 SRR042471
spleen		 SRR065059
pancreas		 SRR345197
brain		 SRR363960
testes		 SRR391846
embryo		 SRR391853
embryo
.....................................................................CACTCAAGCTCCGGTCGGACG............................................................................................................ 21 0 20 10.40 208 92 4 0 35 25 4 22 8 14 1 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................CACTCAAGCTCCGGTCGGACGA........................................................................................................... 22 0 20 7.15 143 24 66 1 13 7 4 7 0 7 13 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................CTCAAGCTCCGGTCGGACGA........................................................................................................... 20 0 20 6.90 138 118 0 0 0 0 19 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................CTCAAGCTCCGGTCGGACGAG.......................................................................................................... 21 0 20 5.00 100 0 0 81 0 0 0 0 19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................ACACTCAAGCTCCGGTCGGACG............................................................................................................ 22 0 20 2.30 46 17 0 0 9 0 0 0 8 8 1 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................TCAAGCTCCGGTCGGACG............................................................................................................ 18 0 20 2.25 45 34 0 0 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................ACTCAAGCTCCGGTCGGACG............................................................................................................ 20 0 20 2.15 43 0 0 0 0 0 43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................ACACTCAAGCTCCGGTCGGACGA........................................................................................................... 23 0 20 1.20 24 4 8 0 0 0 0 1 1 1 7 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0
.....................................................................CACTCAAGCTCCGGTCGGGCG............................................................................................................ 21 1 20 1.00 20 8 1 0 5 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................CGGTCGGACGAGTTGTCTTACT................................................................................................ 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................CGGTCGGACGAGTTGTCTTACTCAAGAT.......................................................................................... 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................CCACTCAAGCTCCGGTCGGACGA........................................................................................................... 23 1 20 0.85 17 0 0 0 0 0 0 4 10 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................CACTCAAGCTCCGGTCGGGCGA........................................................................................................... 22 1 20 0.80 16 6 0 0 0 5 0 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........CGACACCACCGCGAGCGGAAATTAGGGT................................................................................................................................................................ 28 0 3 0.67 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................ACTCAAGCTCCGGTCGGACGAG.......................................................................................................... 22 0 20 0.60 12 0 8 0 0 0 0 0 0 0 0 0 0 1 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................TCAAGCTCCGGTCGGACGAG.......................................................................................................... 20 0 20 0.60 12 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................TACACTCAAGCTCCGGTCGGACG............................................................................................................ 23 1 20 0.50 10 9 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........CCGACACCACCGCGAGCGGAAATTAGGGT................................................................................................................................................................ 29 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................CAAGCTCCGGTCGGACGA........................................................................................................... 18 0 20 0.45 9 0 0 0 0 0 0 0 4 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............ACACCACCGCGAGCGGAAATTAGGGT................................................................................................................................................................ 26 0 16 0.44 7 0 5 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................ACACTCAAGCTCCGGTCGGGCGA........................................................................................................... 23 1 20 0.30 6 4 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................CAAGCTCCGGTCGGACGAG.......................................................................................................... 19 0 20 0.25 5 0 0 0 0 0 0 0 0 0 0 4 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................GGACAGAGTGCTTCCATT.............................................. 18 1 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................GCTCCGGTCGGACGA........................................................................................................... 15 0 20 0.15 3 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................TCAAGCTCCGGTCGGACGA........................................................................................................... 19 0 20 0.15 3 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CGTCCGTCTAGAGACACTCAAGCT....................................................................................................................... 24 0 20 0.15 3 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CGTCCGTCTAGAGACACTCAAGCTC...................................................................................................................... 25 0 20 0.10 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................CAAGCTCCGGTCGGACG............................................................................................................ 17 0 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................CACTCACGCTCCGGTCGGACGA........................................................................................................... 22 1 20 0.10 2 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................AAGCTCCGGTCGGACGAG.......................................................................................................... 18 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............ACCACCGCGAGCGGAAATTAGGGT................................................................................................................................................................ 24 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................ACTCAAGCTCCGGTCGGACGA........................................................................................................... 21 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0
.....................................................................CACTCAAGCTCCGGTCGGACGAG.......................................................................................................... 23 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................TACACTCAAGCTCCGGTCGGACGA........................................................................................................... 24 1 20 0.10 2 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................GGACAGAGTTCTGCCATATT............................................ 20 2 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................GCTCCGCTAGGACGAGTTGGC..................................................................................................... 21 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................CCGGTCGGTCCTTGGGTGTCTCTTT................................................................. 25 2 13 0.08 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CAGCTCCGGTCGGCCGAGTTG....................................................................................................... 21 2 14 0.07 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................ACCGCGAGCGGAAATTAGGGT................................................................................................................................................................ 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................CGAGCGGAAATTAGGGTCGTGAACCC....................................................................................................................................................... 26 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................CACTCACGCTCCGGTCGGACG............................................................................................................ 21 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
....................................................................ACGCTCAAGCTCCGGTCGGACG............................................................................................................ 22 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............CCACCGCGAGCGGAAATTAGGGTCG.............................................................................................................................................................. 25 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................CTCTCAAGCTCCGGTCGGACGA........................................................................................................... 22 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................CCGCGAGCGGAAATTAGGGT................................................................................................................................................................ 20 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................TACACTCAAGCTCCGGTCGGGCGA........................................................................................................... 24 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............ACCACCGCGAGCGGAAATTAGGG................................................................................................................................................................. 23 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................TGTCTCTTTGGGACAGAGTTCTTC.................................................. 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.....................................................................CACTCGAGCTCCGGTCGGACGA........................................................................................................... 22 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................CCGTCTAGAGACACTCAAGCTCCGGTCG................................................................................................................ 28 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.CCGTCGGCCTGACACC..................................................................................................................................................................................... 16 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
................CACCGCGAGCGGAAATTAGGGT................................................................................................................................................................ 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................ACGCTCAAGCTCCGGTCGGACGA........................................................................................................... 23 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................CACTCAAGCTCCGTTCGGGCG............................................................................................................ 21 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................CACTAAAGCTCCGGTCGGACGA........................................................................................................... 22 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................CACTAAAGCTCCGGTCGGACG............................................................................................................ 21 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........AACCCCACCGCGAGCGGAAATTAGGGT................................................................................................................................................................ 27 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AAATCCGTCCGTCTAGAGAGACTCAAGC........................................................................................................................ 28 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................CCGTCCGTCTAGAGACACTCAAGCTC...................................................................................................................... 26 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............ACACCATCGCGAGCGGAAATTAGGGT................................................................................................................................................................ 26 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................ATCTCCGTCCGTTTAGAGACACTCAAGC........................................................................................................................ 28 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................CCACTCAAGCTCCGGTCGGGCGA........................................................................................................... 23 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................ACACTCAAGCTCCGGTCGGGCG............................................................................................................ 22 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........AACACCACCGCGAGCGGAAATTAGGGT................................................................................................................................................................ 27 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................CACTCAAGCTCCGGCCGGACGA........................................................................................................... 22 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................ACACTCGAGCTCCGGTCGGACGA........................................................................................................... 23 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................CACTCAAGCTCCGGTCGCACG............................................................................................................ 21 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
mm10 chr17:70860453-70860650 - mmu-mir-1195 AGGCtGggGGGgTGTGGTGGgGgTgGggTTTttTgggtGgtgTTGGGtGGTtGtGGgtGGgtGtTgTgTGTGtGTTgGtGGggtGggTGgTgttgtGttTGtGTTgTtGGGgtGggtGGttgtgtgtGtGtttgggTGTgTgttGttGGTtttttGTtttttttttttttttttGtttttGTttttttGttGttGttt
cavPor3 Unknown ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dipOrd1 Unknown ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
hetGal2 Unknown ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ochPri2 Unknown ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
oryCun2 Unknown ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
rn5 Unknown ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
speTri2 Unknown ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
mm10
AGGCtGggGGGgTGTGGTGGgGgTgGggTTTttTgggtGgtgTTGGGtGGTtGtGGgtGGgtGtTgTgTGTGtGTTgGtGGggtGggTGgTgttgtGttTGtGTTgTtGGGgtGggtGGttgtgtgtGtGtttgggTGTgTgttGttGGTtttttGTtttttttttttttttttGtttttGTttttttGttGttGtttSizeHit CountTotal NormTotalSRR042455
blood		SRR042459
blood		SRR042460
blood		SRR069834
blood		SRR073954
blood		SRR073955
blood		SRR525238
Blood		SRR525237
Blood		SRR042456
bone marrow		SRR042457
bone marrow		SRR042461
bone marrow		SRR042462
bone marrow		GSM317181
brain		GSM317182
brain		GSM361394
brain		GSM361395
brain		GSM361398
brain		GSM361399
brain		GSM361402
brain		GSM361407
brain		GSM361408
brain		GSM361415
brain		GSM361430
brain		GSM510444
brain		SRR037904
brain		SRR037905
brain		SRR037906
brain		SRR037907
brain		SRR038741
brain		SRR038744
brain		SRR039610
brain		SRR042477
brain		SRR060845
brain		SRR206939
brain		SRR206940
brain		SRR206941
brain		SRR206942
brain		SRR345196
brain		SRR345197
brain		SRR345198
brain		SRR345199
brain		SRR345200
brain		SRR345201
brain		SRR345202
brain		SRR345203
brain		SRR345204
brain		SRR345205
brain		SRR345206
brain		SRR345207
brain		SRR037919
embryo		SRR037920
embryo		SRR037921
embryo		SRR037922
embryo		SRR037923
embryo		SRR037924
embryo		SRR037925
embryo		SRR037926
embryo		SRR037927
embryo		SRR037928
embryo		SRR037929
embryo		SRR037930
embryo		SRR391845
embryo		SRR391846
embryo		SRR391847
embryo		SRR391848
embryo		SRR391849
embryo		SRR391850
embryo		SRR391851
embryo		SRR391852
embryo		SRR391853
embryo		SRR116846
epididymis		GSM566419
fibroblast		GSM566420
fibroblast		SRR039183
fibroblast		SRR039184
fibroblast		SRR039185
fibroblast		SRR039186
fibroblast		SRR042475
fibroblast		SRR390297
fibroblast		SRR390298
fibroblast		SRR042484
salivary gland		SRR042476
heart		SRR095853
heart		SRR095855BC1
heart		SRR095855BC10
heart		SRR095855BC2
heart		SRR095855BC3
heart		SRR095855BC4
heart		SRR095855BC5
heart		SRR095855BC6
heart		SRR095855BC7
heart		SRR095855BC8
heart		SRR095855BC9
heart		SRR065052
jejunum		SRR065053
jejunum		SRR065054
jejunum		SRR065055
jejunum		SRR065056
jejunum		SRR042480
kidney		SRR040488
liver		SRR042479
liver		SRR065045
liver		SRR065046
liver		SRR065047
liver		SRR065048
liver		SRR065049
liver		SRR065050
liver		SRR077864
liver		SRR077865
liver		SRR077866
liver		SRR042478
lung		SRR042468
lymph		SRR042469
lymph		SRR042470
lymph		SRR042472
lymph		SRR042473
lymph		SRR039152
muscle		SRR039153
muscle		SRR039154
muscle		SRR042483
muscle		SRR014234
ovary		SRR037896
ovary		SRR037897
ovary		SRR037898
ovary		SRR037899
ovary		SRR042486
ovary		SRR042481
pancreas		SRR065058
pancreas		SRR065059
pancreas		SRR042482
skin		SRR042463
spleen		SRR042465
spleen		SRR042466
spleen		SRR042467
spleen		SRR042471
spleen		SRR042487
spleen		SRR059768
spleen		SRR059769
spleen		SRR059770
spleen		SRR059771
spleen		SRR059772
spleen		SRR059773
spleen		GSM475281
testes		GSM509275
testes		GSM509279
testes		SRR014231
testes		SRR014235
testes		SRR014236
testes		SRR028731
testes		SRR037900
testes		SRR037901
testes		SRR037902
testes		SRR037903
testes		SRR042485
testes		SRR051939
testes		SRR051940
testes		SRR069809
testes		SRR069810
testes		SRR069811
testes		SRR248523
testes		SRR248524
testes		SRR248525
testes		SRR248526
testes		SRR248527
testes		SRR363956
testes		SRR363957
testes		SRR363958
testes		SRR363959
testes		SRR363960
testes		SRR363963
testes		SRR363964
testes		SRR553582
brain		SRR553583
cerebellum		SRR553584
heart		SRR553585
kidney		SRR553602
testes		SRR553603
testes		SRR553604
testes		SRR553586
testes		SRR042464
thymus		SRR059765
thymus		SRR059766
thymus		SRR059767
thymus		SRR032476
uterus		SRR032477
uterus
......................................................................TGAGTTCGAGGCCAGCCTGCTCA.........................................................................................................232162.50325000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000046002363012200021606019172382000000000000220000000
......................................................................TGAGTTCGAGGCCAGCCTGCTCAA........................................................................................................24229.5059000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000010010000000001512000100000000000000000000000
........................................................................AGTTCGAGGCCAGCCTGCTCA.........................................................................................................21212.5025000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000102012430000000000000000000000
......................................................................TGAGTTCGAGGCCAGCCTGCTC..........................................................................................................222010.302060000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000800000000000000197000000000000000000000000
......................................................................TGAGTTCGAGGCCAGCCTGCTCAT........................................................................................................2487.6361000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020031200100000500010010000000000000000000000
......................................................................TGAGTTCGAGGCCAGCCTGCTCAAA.......................................................................................................25143.43480000000000000000000000000000000000000000000000000000100000100010000000000000000000000000000000000000000000000000000000000000000000000000000000100161200200000201001001000000000000000000000
........................................................................AGTTCGAGGCCAGCCTGCTCAA........................................................................................................2222.50500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000040000000000000000000000000000
.......................................................................GAGTTCGAGGCCAGCCTGCTCA.........................................................................................................2222.00400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000001000110000000000000000000000
......................................................................TGAGTTCGAGGCCAGCCTGCTCAAC.......................................................................................................2522.00400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000021000000000000000000000000000
......................................................................TGAGTTCGAGGCCAGCCTGCTCAAT.......................................................................................................25201.3026000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040021100000000000000000000000000000000000000
......................................................................TGAGTTCGAGGCCAGCCTGCTCAAG.......................................................................................................2581.00800000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000050000000000000000000000000000
.......................................................................GAGTTCGAGGCCAGCCTGCTC..........................................................................................................21200.6012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000
....................................................................TGTGAGTTCGAGGCCAGCCTGCTCA.........................................................................................................2520.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................TGTGAGTTCGAGGCCAGCCTGCTCAAA.......................................................................................................2720.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.....GCCGGGCTGTGGTGGCGCTCGCCTT........................................................................................................................................................................2520.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.......................................................................GAGTTCGAGGCCAGCCTGCTCAA........................................................................................................2320.50100000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................TGAGTTCGAGGCCAGCCTGCTCATA.......................................................................................................25200.45900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000080000000000000000000000000000
........................................................................AGTTCGAGGCCAGCCTGCTCAT........................................................................................................2280.38300000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000
.......CGGGCTGTGGTGGCGCTCGCC..........................................................................................................................................................................2130.33100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..........................................................................TTCGAGGCCAGCCTGCTCAAC.......................................................................................................2130.33100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................TGAGTTCGAGGCCAGCCTGCTCAAGT......................................................................................................26200.25500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000040000000000000000000000000000
.......................................................................GAGTTCGAGGCCAGCCTGCTCAAG.......................................................................................................2480.25200000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................TGTGAGTTCGAGGCCAGCCTG.............................................................................................................21200.15300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000
......................................................................TGAGTTCGAGGCCAGCCTGCTCAG........................................................................................................24200.15300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010100000000000000000000000
......................................................................TGAGTTCGAGGCCAGCCTGCTCAC........................................................................................................24200.15300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000100000000000000000000000
......................................................................TGAGTTCGAGGCCAGCCTGCTCAAAT......................................................................................................26200.15300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000020000000000000000000000000000
......................................................................TGAGTTCGAGGCCAGCCTGCTCAACT......................................................................................................2670.14100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................AGTTCGAGGCCAGCCTGCTCAAT.......................................................................................................23200.10200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001000000000000000000000000000
......................................................................TGAGTTCGAGGCCAGCCTGCT...........................................................................................................21200.10200000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................AAAGAAAAAGTAAAAAAGAAGC.....22120.08100000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................GAGTTCGAGGCCAGCCTGCTCAAA.......................................................................................................24140.07100000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................TTCGAGGCCAGCCTGCTCAAA.......................................................................................................21160.06100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...................................................................CTGTGAGTTCGAGGCCAGCCTG.............................................................................................................22200.05100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
............................................................................CGAGGCCAGCCTGCTC..........................................................................................................16200.05100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.....................................................AGGCAGGCAGATCTCTGTGAGTTCG........................................................................................................................25200.05100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................AGTTCGAGGCCAGCCTGCTCAC........................................................................................................22200.05100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................AGTTCGAGGCCAGCCTGCTC..........................................................................................................20200.05100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
......................................................................TGAGTTCGAGGCCAGCCTGCTCAATT......................................................................................................26200.05100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
.......................................................................GAGTTCGAGGCCAGCCTGCTCAC........................................................................................................23200.05100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
....AGCCGGGCTGTGGTGGCG................................................................................................................................................................................18200.05100000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................TTCGAGGCCAGCCTGCTC..........................................................................................................18200.05100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
cavPor3
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dipOrd1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
hetGal2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
ochPri2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
oryCun2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM1528820
Adult_testes		GSM1528821
Adult_testes_Mili_IP
No Reads
rn5
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM1528817
Adult_testes		GSM1528818
Adult_testes_Mili_IP		GSM1528819
10dpp_testes
No Reads
speTri2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads

Generated: 04/30/2015 at 08:52 PM