miRDeep2

miRDeep home

Parameters used


miRDeep2 version2.0.0.3
Program call/home/gfs05/jm889/packages/mirdeep2/miRDeep2.pl dm3_noprior_3libs_low_reads.fa dm3.fa dm3_noprior_3libs_low_reads_vs_genome.arf none none none -t D.melanogaster
Readsdm3_noprior_3libs_low_reads.fa
Genomedm3.fa
Mappingsdm3_noprior_3libs_low_reads_vs_genome.arf
Reference mature miRNAsnone
Other mature miRNAsnone
SpeciesD.melanogaster


Survey of miRDeep2 performance for score cut-offs -10 to 10
miRDeep2 scorefor details on how the log-odds score is calculated, see Friedlander et al., Nature Biotechnology, 2008. estimated signal-to-noisefor the given score cut-off, the signal-to-noise ratio is estimated as r = total miRNA hairpins reported / mean estimated false positive miRNA hairpins over 100 rounds of permuted controls. excision gearingthis is the minimum read stack height required for excising a potential miRNA precursor from the genome in this analysis.
1011.32
9112
810.82
710.72
610.42
510.32
4102
39.72
29.62
18.32
02.72
-122
-21.72
-31.62
-41.52
-51.42
-61.32
-71.22
-81.22
-91.22
-101.22





novel miRNAs predicted by miRDeep2


provisional idthis is a provisional miRNA name assigned by miRDeep2. The first part of the id designates the chromosome or genome contig on which the miRNA gene is located. The second part is a running number that is added to avoid identical ids. The running number is incremented by one for each potential miRNA precursor that is excised from the genome. Clicking this field will display a pdf of the structure, read signature and score breakdown of the reported miRNA. miRDeep2 scorethe log-odds score assigned to the hairpin by miRDeep2 estimated probability that the miRNA candidate is a true positivethe estimated probability that a predicted novel miRNA with a score of this or higher is a true positive. To see exactly how this probability is estimated, mouse over the 'novel miRNAs, true positives' in the table at the top of the webpage. rfam alertthis field indicates if the predicted miRNA hairpin has sequence similarity to reference rRNAs or tRNAs. Warnings in this field should overrule the estimated probability that a reported miRNA is a true positive (previous field). total read countthis is the sum of read counts for the predicted mature, loop and star miRNAs. mature read countthis is the number of reads that map to the predicted miRNA hairpin and are contained in the sequence covered by the predicted mature miRNA, including 2 nts upstream and 5 nts downstream. loop read countthis is the number of reads that map to the predicted miRNA hairpin and are contained in the sequence covered by the predicted miRNA loop, including 2 nts upstream and 5 nts downstream. star read countthis is the number of reads that map to the predicted miRNA hairpin and are contained in the sequence covered by the predicted star miRNA, including 2 nts upstream and 5 nts downstream. significant randfold p-valuethis field indicates if the estimated randfold p-value of the excised potential miRNA hairpin is equal to or lower than 0.05 (see Bonnet et al., Bioinformatics, 2004). miRBase miRNAthis field displays the ids of any reference mature miRNAs for the species that map perfectly (full length, no mismatches) to the reported miRNA hairpin. If this is the case, the reported miRNA hairpin is assigned as a known miRNA. If not, it is assigned as a novel miRNA. If more than one reference mature miRNA map to the miRNA hairpin, then only the id of the miRNA that occurs last in the input file of reference mature miRNAs for the species is displayed. example miRBase miRNA with the same seedthis field displays the ids of any reference mature miRNAs from related species that have a seed sequence identical to that of the reported mature miRNA. The seed is here defined as nucleotides 2-8 from the 5' end of the mature miRNA. If more than one reference mature miRNA have identical seed, then only the id of the miRNA that occurs last in the input file of reference mature miRNAs from related species is displayed. UCSC browserif a species name was input to miRDeep2, then clicking this field will initiate a UCSC blat search of the consensus precursor sequence against the reference genome. NCBI blastnclicking this field will initiate a NCBI blastn search of the consensus precursor sequence against the nr/nt database (non-redundant collection of all NCBI nucleotide sequences). consensus mature sequencethis is the consensus mature miRNA sequence as inferred from the deep sequencing reads. consensus star sequencethis is the consensus star miRNA sequence as inferred from the deep sequencing reads. consensus precursor sequencethis is the consensus precursor miRNA sequence as inferred from the deep sequencing reads. Note that this is the inferred Drosha hairpin product, and therefore does not include substantial flanking genomic sequence as does most miRBase precursors. precursor coordinateThe given precursor coordinates refer do absolute position in the mapped reference sequence
chr2R_6099 1.4e+6 2901360 2848486 0 52874 no blat blast uaauacugucagguaaagauguc caucuuaccgggcagcauuaga caucuuaccgggcagcauuagauccuuuuuauaacucuaauacugucagguaaagauguc chr2R:12718952..12719012:+
chr2L_2045 4.2e+5 839050 839028 0 22 no blat blast uggaauguaaagaaguauggag ccaugcuuccuugcauucaaua ccaugcuuccuugcauucaauaguuauauucaagcauauggaauguaaagaaguauggag chr2L:20487458..20487518:+
chr3L_11130 4.0e+5 785951 640489 0 145462 no blat blast agcgagguauagaguuccuacg uaggaacuucauaccgugcucu agcgagguauagaguuccuacguucauuauaaacucguaggaacuucauaccgugcucu chr3L:10358344..10358403:+
chr3L_10213 3.6e+5 723848 716388 0 7460 no blat blast ugagaucauuuugaaagcugauu ccgguuuucgauuugguuugacu ccgguuuucgauuugguuugacuguuuuucauacaagugagaucauuuugaaagcugauu chr3L:642222..642282:+
chr3L_11128 3.3e+5 648850 640488 0 8362 no blat blast agcgagguauagaguuccuacg uaggaacuuaauaccgugcucu agcgagguauagaguuccuacguuccuauauucagucguaggaacuuaauaccgugcucu chr3L:10312908..10312968:+
chr2R_8510 2.4e+5 477195 476971 0 224 no blat blast uggacggagaacugauaagggc ccuuaucauucucucgccccgu ccuuaucauucucucgccccgugugcacuuaaagacaacuggacggagaacugauaagggc chr2R:9216924..9216985:-
chr2L_3860 1.7e+5 351123 347231 0 3892 no blat blast uaucacagccagcuuugaugagcu ccucaucaagugguugugaua ccucaucaagugguugugauauggauacccaacgcauaucacagccagcuuugaugagcu chr2L:19569494..19569554:-
chr2L_3862 1.4e+5 293775 292957 7 811 no blat blast uaucacagccagcuuugaugagcu cucucaaagugguugugaaaug cucucaaagugguugugaaaugcauuuccgcuuugcgcggcauaucacagccagcuuugaugagcu chr2L:19569900..19569966:-
chr3R_15791 1.1e+5 222655 222495 157 3 no blat blast ugaacacagcuggugguaucc gggauacacccugugcucgcu gggauacacccugugcucgcuuugaaugaaaugcaagcaagugaacacagcuggugguaucc chr3R:5916862..5916924:+
chr2L_1616 7.8e+4 153736 153389 0 347 no blat blast ugagguaguagguuguauagu cuauacaaugugcuagcuuucu ugagguaguagguuguauaguaguaauuacacaucauacuauacaaugugcuagcuuucu chr2L:18472044..18472104:+
chr3L_11772 7.6e+4 149877 145481 0 4396 no blat blast ucuuugguuaucuagcuguaug uaaagcuagcuuaccgaaguua ucuuugguuaucuagcuguaugagugauaaauaacgucauaaagcuagcuuaccgaaguua chr3L:19558240..19558301:+
chr2L_3405 5.9e+4 116398 115398 0 1000 no blat blast aauggcacuggaagaauucacggg cgugaucucuuaguggcaucua aauggcacuggaagaauucacgggguaauuuuuauacaacccgugaucucuuaguggcaucua chr2L:11953423..11953486:-
chr3R_15797 5.8e+4 115525 113290 158 2077 no blat blast uaaaugcacuaucugguacgaca cgugucaggagugcauuugca cgugucaggagugcauuugcacugaaacuaucugaagcauguaaaugcacuaucugguacgaca chr3R:5925761..5925825:+
chr3R_18796 5.1e+4 101711 101539 0 172 no blat blast caucacagucugaguucuugcu caagaacuuucucugugacccg caagaacuuucucugugacccgcguguacuuaaaagccgcaucacagucugaguucuugcu chr3R:17448224..17448285:-
chrUextra_24144 4.5e+4 89436 24730 64431 275 no blat blast guggagaaggguuucgugug gcgaaagccgaaaauuuucaa guggagaaggguuucgugugacagugguugaucacgaguuagucgguccuaaguucaaggcgaaagccgaaaauuuucaa chrUextra:25300120..25300200:+
chr2R_5413 4.5e+4 89303 87285 0 2018 no blat blast ucagucuuuuucucucuccuau gggagcgagacggggacucacu gggagcgagacggggacucacugugcuuauuaaauagucagucuuuuucucucuccuau chr2R:5441270..5441329:+
chrX_30047 3.9e+4 76871 76287 0 584 no blat blast uaucacagccauuuugacgagu gcgucaaaaugacugugagcuaug gcgucaaaaugacugugagcuauguggauuugacuucauaucacagccauuuugacgagu chrX:8985270..8985330:+
chr3R_18432 3.8e+4 76335 76284 0 51 no blat blast uaucacagccauuuugacgagu ucguuaaaauguuugugaacuuaug ucguuaaaauguuugugaacuuauguauucacaaucauaucacagccauuuugacgagu chr3R:11243133..11243192:-
chr2R_9031 3.6e+4 71090 70680 5 405 no blat blast uggcaagaugucggcauagcuga cgcuaugcugcaucuagucagu uggcaagaugucggcauagcugacguugaaaagcgauuuugaagagcgcuaugcugcaucuagucagu chr2R:13671310..13671378:-
chr3R_17641 3.2e+4 64665 41184 12 23469 no blat blast acccuguagauccgaauuuguu caaauucgguucuagagagguuu acccuguagauccgaauuuguuuuauacuagcuuuaaggacaaauucgguucuagagagguuu chr3R:2635233..2635296:-
chr3R_18263 3.2e+4 63045 62782 28 235 no blat blast cuaaguacuagugccgcaggag uccugcugcccaagugcuuauu cuaaguacuagugccgcaggaguuagguucguguccgcaauaccuccugcugcccaagugcuuauu chr3R:9289952..9290018:-
chrUextra_23344 2.9e+4 58183 57629 0 554 no blat blast gacgcgcaugaauggauu gccaaaugccucgucauc gccaaaugccucgucaucuaauuugugacgcgcaugaauggauu chrUextra:17633672..17633716:+
chrU_28907 2.9e+4 58183 57629 0 554 no blat blast gacgcgcaugaauggauu gccaaaugccucgucauc gccaaaugccucgucaucuaauuugugacgcgcaugaauggauu chrU:4082383..4082427:-
chrXHet_32924 2.9e+4 58183 57629 0 554 no blat blast gacgcgcaugaauggauu gccaaaugccucgucauc gccaaaugccucgucaucuaauuugugacgcgcaugaauggauu chrXHet:202523..202567:+
chrUextra_22204 2.9e+4 58183 57629 0 554 no blat blast gacgcgcaugaauggauu gccaaaugccucgucauc gccaaaugccucgucaucuaauuugugacgcgcaugaauggauu chrUextra:6253175..6253219:+
chrU_28908 2.9e+4 58183 57629 0 554 no blat blast gacgcgcaugaauggauu gccaaaugccucgucauc gccaaaugccucgucaucuaauuugugacgcgcaugaauggauu chrU:4082383..4082427:-
chrXHet_32923 2.9e+4 58183 57629 0 554 no blat blast gacgcgcaugaauggauu gccaaaugccucgucauc gccaaaugccucgucaucuaauuugugacgcgcaugaauggauu chrXHet:202523..202567:+
chrUextra_22203 2.9e+4 58183 57629 0 554 no blat blast gacgcgcaugaauggauu gccaaaugccucgucauc gccaaaugccucgucaucuaauuugugacgcgcaugaauggauu chrUextra:6253175..6253219:+
chrUextra_23343 2.9e+4 58183 57629 0 554 no blat blast gacgcgcaugaauggauu gccaaaugccucgucauc gccaaaugccucgucaucuaauuugugacgcgcaugaauggauu chrUextra:17633672..17633716:+
chr3LHet_15057 2.9e+4 57631 57629 0 2 no blat blast gacgcgcaugaauggauu uucguugcgcucguggaca gacgcgcaugaauggauuaacgacggacguguuuucguugcgcucguggaca chr3LHet:620473..620525:-
chr2R_8396 2.2e+4 44111 28731 6 15374 no blat blast ugucauggaauugcucucuuug aagagagcuauccgucgacaguc aagagagcuauccgucgacagucaaguuaagaccgauuguaauacugucauggaauugcucucuuug chr2R:8057668..8057735:-
chr3R_18800 2.1e+4 43149 43042 0 107 no blat blast uguuaacuguaagacugugucu acauagucauacggugaauguu acauagucauacggugaauguuguguauuggagaccaauguuaacuguaagacugugucu chr3R:17623970..17624030:-
chr3L_11176 2.1e+4 42112 42087 3 22 no blat blast uuugugaccgacacuaacgggu cucguuuuugcgaucacaaauu uuugugaccgacacuaacggguaauuguuuggccgccaggauuacucguuuuugcgaucacaaauu chr3L:11650037..11650103:+
chr2R_8426 1.7e+4 rRNA/tRNA 34798 34639 53 106 no blat blast gugaucgucuagugguuaggacccc guucgaauccuggucacg gugaucgucuagugguuaggaccccacguuguggccgugguaacccagguucgaauccuggucacg chr2R:8221741..8221807:-
chr2R_8424 1.7e+4 rRNA/tRNA 34798 34639 53 106 no blat blast gugaucgucuagugguuaggacccc guucgaauccuggucacg gugaucgucuagugguuaggaccccacguuguggccgugguaacccagguucgaauccuggucacg chr2R:8221433..8221499:-
chr2R_8428 1.7e+4 rRNA/tRNA 34798 34639 53 106 no blat blast gugaucgucuagugguuaggacccc guucgaauccuggucacg gugaucgucuagugguuaggaccccacguuguggccgugguaacccagguucgaauccuggucacg chr2R:8222502..8222568:-
chr2R_9200 1.7e+4 rRNA/tRNA 34798 34639 53 106 no blat blast gugaucgucuagugguuaggacccc guucgaauccuggucacg gugaucgucuagugguuaggaccccacguuguggccgugguaacccagguucgaauccuggucacg chr2R:15393846..15393912:-
chr2R_5719 1.7e+4 rRNA/tRNA 34798 34639 53 106 no blat blast gugaucgucuagugguuaggacccc guucgaauccuggucacg gugaucgucuagugguuaggaccccacguuguggccgugguaacccagguucgaauccuggucacg chr2R:8223926..8223992:+
chr2R_5722 1.7e+4 rRNA/tRNA 34745 34639 0 106 no blat blast gugaucgucuagugguuaggacccc guucgaauccuggucacg gugaucgucuagugguuaggaccccacguuguggguuaccacacccagguucgaauccuggucacg chr2R:8224241..8224307:+
chr2R_8398 1.7e+4 34709 28731 0 5978 no blat blast ugucauggaauugcucucuuug aaagagagcuguccgucgacagu aaagagagcuguccgucgacaguccagaaacuauuuaauaucacugucauggaauugcucucuuug chr2R:8057888..8057954:-
chr3R_15364 1.7e+4 34603 31597 0 3006 no blat blast aaauugacucuaguagggagu cucccuaacggagucagauug aaauugacucuaguagggaguccuuuaaugagcgacucccuaacggagucagauug chr3R:121107..121163:+
chr2L_2053 1.7e+4 33922 33252 0 670 no blat blast uugguccccuucaaccagcugu agcugguugacaucgggucagau agcugguugacaucgggucagaucuguuuuucaagcauuugguccccuucaaccagcugu chr2L:20616635..20616695:+
chr3L_11776 1.6e+4 31928 31302 115 511 no blat blast gugcauuguagucgcauuguc caauacaacuucagugcaagcu gugcauuguagucgcauugucugucccaauugcuucaggcaauacaacuucagugcaagcu chr3L:19791086..19791147:+
chr2R_9211 1.6e+4 31887 30794 2 1091 no blat blast aaaggaacgaucguugugauaug uaucacagugauuuuccuuuau aaaggaacgaucguugugauaugaguuguuuccuaacauaucacagugauuuuccuuuau chr2R:15548667..15548727:-
chr3R_19051 1.4e+4 29087 28949 4 134 no blat blast auauuguccugucacagcagu cugcugggucggggcauuaaca auauuguccugucacagcaguauuguaacacuauauuauaguuuacugcugggucggggcauuaaca chr3R:21414599..21414666:-
chr2R_8085 1.4e+4 28439 28406 3 30 no blat blast uaaaguaaauagucuggauugaug caucaacaggcauuuacuucaa uaaaguaaauagucuggauugaugaaaguugcauucgagaauucaucaacaggcauuuacuucaa chr2R:5200542..5200607:-
chr2L_1618 1.3e+4 26370 26220 0 150 no blat blast ucccugagacccuaacuuguga acaaguuuugaucuccgguau ucccugagacccuaacuugugacuuuuaauaccaguuucacaaguuuugaucuccgguau chr2L:18472343..18472403:+
chr3L_13222 1.2e+4 24893 23285 3 1605 no blat blast uagcaccauucgaaaucagug acugagaucgauuggugcauaga acugagaucgauuggugcauagauaucaggagaacccacucaauuuaacucuagcaccauucgaaaucagug chr3L:11939207..11939279:-
chr3R_17235 1.0e+4 20921 18692 51 2178 no blat blast ugacuagauuucaugcucgucu gcgaacauggaucuagugcacg gcgaacauggaucuagugcacggugguucaugauuaaguucgugacuagauuucaugcucgucu chr3R:25042924..25042988:+
chr2R_9218 1.0e+4 19635 19598 0 37 no blat blast ucacugggcaaagugugucuca ggaugcaucuugugcaguuaug ggaugcaucuugugcaguuauguuucaaucucacaucacugggcaaagugugucuca chr2R:15549104..15549161:-
chr2L_3525 9.9e+3 19427 19402 0 25 no blat blast uaaguaguauccauuaaaggguug accuuuugauguacuacuuuaa uaaguaguauccauuaaaggguuguucucaacaugcaaaucaaccuuuugauguacuacuuuaa chr2L:13747760..13747824:-
chr3L_10476 8.3e+3 16362 14189 11 2162 no blat blast uagccucuacuaggcuuugucu acauagccuauaagagguuagg uagccucuacuaggcuuugucugugcauucgaaagccgaucagacauagccuauaagagguuagg chr3L:3251038..3251103:+
chrX_30456 8.2e+3 16253 16210 1 42 no blat blast ugaguauuacaucagguacuggu caguacuuaugucauacuacgc ugaguauuacaucagguacuggugugccuuaaauccaacaaccaguacuuaugucauacuacgc chrX:15403512..15403576:+
chr3L_14008 8.0e+3 15781 15734 0 47 no blat blast ugaaaccguccaaaacugagg cuuaguuuucgacguguuuuggu cuuaguuuucgacguguuuuggugugcuggggaguucuauuccgauugaaaccguccaaaacugagg chr3L:22511310..22511377:-
chr3R_18434 6.8e+3 13367 13172 0 195 no blat blast uaucacagccauuuugaugaguu cuccucaaaggguugugaaaug cuccucaaaggguugugaaaugucgacuauuaucuacucauaucacagccauuuugaugaguu chr3R:11243268..11243331:-
chr2L_1440 6.5e+3 12808 12274 0 534 no blat blast ucuuuggugauuuuagcuguau uagagcuuuauuaccaaaaacc ucuuuggugauuuuagcuguaugguguuuauguauauuccauagagcuuuauuaccaaaaacc chr2L:16698758..16698821:+
chr2L_791 6.4e+3 12628 11732 0 896 no blat blast ucagguaccugaaguagcgcgc cgcgcuaaucagugaccggggcu cgcgcuaaucagugaccggggcugguuuuuuauauacagucagguaccugaaguagcgcgc chr2L:7425814..7425875:+
chrX_31350 6.2e+3 12260 11992 0 268 no blat blast uucguugucgacgaaaccugc cggguuucguuagcagcgggcu cggguuucguuagcagcgggcuguuuuaauaaauucaacaaguucguugucgacgaaaccugc chrX:1682909..1682972:-
chr2R_9216 6.2e+3 12178 12035 9 134 no blat blast ugacuagaccgaacacucgugcu ggcgaaugucgguauggucucu ggcgaaugucgguauggucucuuuuucaaagaaagguuucgauuaagcgaagugacuagaccgaacacucgugcu chr2R:15548939..15549014:-
chr2L_1434 6.1e+3 12074 12044 4 26 no blat blast ucuuugguauucuagcuguag uaaagcuuuuauaccaaagcu ucuuugguauucuagcuguagauuguuucacgcacauuguauaucaucuaaagcuuuuauaccaaagcu chr2L:16697936..16698005:+
chr2L_3262 6.0e+3 11816 11776 4 36 no blat blast uugagcaaaauuucagguguguga ucgcgccuguaucuugcugaacc ucgcgccuguaucuugcugaaccgcugccauuauggccaacgauccgguugagcaaaauuucagguguguga chr2L:9950432..9950504:-
chr3L_11720 5.6e+3 11176 11051 7 118 no blat blast uuuugauuguugcucagaaagcc cuuucgagcaauaauugaaacc uuuugauuguugcucagaaagcccucauuguuuaccaguuggcuuucgagcaauaauugaaacc chr3L:18854082..18854146:+
chrX_31198 5.1e+3 10189 10157 0 32 no blat blast uagcugccuugugaagggcuu aguuuuucauuuggccuggcuagc aguuuuucauuuggccuggcuagcuuacuccuuuuuaaauauugcuagcugccuugugaagggcuu chrX:174221..174287:-
chr3L_13489 4.7e+3 9415 9412 0 3 no blat blast cuuggcacugggagaauucaca ugugguucugcgggugccaaaa cuuggcacugggagaauucacaguugacuuuauuauucugugguucugcgggugccaaaa chr3L:15836520..15836580:-
chr2L_83 4.5e+3 8864 8433 1 430 no blat blast uuuguucguuuggcuuaaguua acuugggccaagggaaugcaaacu acuugggccaagggaaugcaaacugugaucaucccgaaaguuuguucguuuggcuuaaguua chr2L:857556..857618:+
chr2R_9220 3.8e+3 7496 7446 0 50 no blat blast gcacuggguaaaguuuguccua cgacaaaccuuguucgguuuug cgacaaaccuuguucgguuuugccaauuuccaagccagcacuggguaaaguuuguccua chr2R:15549214..15549273:-
chr3R_18436 3.3e+3 6541 6532 4 5 no blat blast uaucacagccagcuuugaug aucaaaaagggcugaagaaa aucaaaaagggcugaagaaagauauuucugcauuugaaucguaucacagccagcuuugaug chr3R:11243485..11243546:-
chr2R_5284 3.1e+3 6196 6155 4 37 no blat blast ucucgaauagcguugugacuga agcggcgaggcuauucaaguaa ucucgaauagcguugugacugagguaacugcgcaucgaaucuacucagcggcgaggcuauucaaguaa chr2R:4332505..4332573:+
chrX_30454 3.1e+3 6178 2975 9 3194 no blat blast cacuuugcaauuggagauugcu uaaucucaauuuguaaaugugag uaaucucaauuuguaaaugugagcgguuuaagccauuugacgcacucacuuugcaauuggagauugcu chrX:15403003..15403071:+
chr2R_8623 3.0e+3 5979 5408 0 571 no blat blast cgcaguauauuuuuguguuuug aaucacaggauuauacuguga cgcaguauauuuuuguguuuuguuucguuuugcaauccaaaucacaggauuauacuguga chr2R:10103307..10103367:-
chr3L_13977 2.9e+3 5839 5724 0 115 no blat blast ugucuuuuuccgcuuacuggcg acaggaaagggaaaaaggcgua ugucuuuuuccgcuuacuggcguuucaauuccacaacgacaggaaagggaaaaaggcgua chr3L:21661827..21661887:-
chr2L_758 2.8e+3 5628 5216 0 412 no blat blast ucaauuccguagugcauugcagu ugcaagcgcugcggauuuggca ucaauuccguagugcauugcaguguguuucauuauuuacugcaagcgcugcggauuuggca chr2L:6902077..6902138:+
chrX_30303 2.6e+3 5156 4931 8 217 no blat blast ucauaagacacacgcggcuau agcuagcggguguuuuauuuggua agcuagcggguguuuuauuugguagcuguaaugauuugaaucuaucauaagacacacgcggcuau chrX:12530385..12530450:+
chr2R_9214 2.5e+3 5078 4435 0 643 no blat blast auaaagcuagacaaccauuga cuuuggucguccagccuuagguga cuuuggucguccagccuuaggugauuuuuccggucauaaagcuagacaaccauuga chr2R:15548805..15548861:-
chr3R_16515 2.5e+3 4989 4746 0 243 no blat blast uagcaccacaugauucggcuu gcccgaauuaugugggagcugcg gcccgaauuaugugggagcugcgccguuuccguaauccguagcaccacaugauucggcuu chr3R:16561660..16561720:+
chr2L_1437 2.4e+3 4775 4631 0 144 no blat blast uaaagcuagauuaccaaagcau gcuuuggcgcuuuagcuguaug gcuuuggcgcuuuagcuguaugauagauuuaaacuacuucauaaagcuagauuaccaaagcau chr2L:16698572..16698635:+
chr2L_1436 2.1e+3 4266 3968 0 298 no blat blast ucagguacuuagugacucuca gggggucacucugugccugugc ucagguacuuagugacucucaaugcuuuugacauuuugggggucacucugugccugugc chr2L:16698418..16698477:+
chrX_30733 1.6e+3 3272 2728 422 122 no blat blast aagugaagaaguaguuuuuu gguaugauucucgcuucg gguaugauucucgcuucgggugcgagaggucccggguucaauucccggacgagcccaagugaagaaguaguuuuuu chrX:18459813..18459889:+
chr2L_1614 1.5e+3 3006 2705 0 301 no blat blast aacccguaaauccgaacuugug caagaccggcauuaugggaguc aacccguaaauccgaacuugugcuguuuuauaucuguuacaagaccggcauuaugggaguc chr2L:18471445..18471506:+
chr3L_14011 1.4e+3 2818 1158 5 1655 no blat blast ugagauucuucuauucuacuuu aguagaauagcaggcuuaucaca aguagaauagcaggcuuaucacauguuuaauucaaucugcugugagauucuucuauucuacuuu chr3L:22662401..22662465:-
chrX_30452 1.3e+3 2576 2550 0 26 no blat blast aaauaucagcugguaauucuggg cggaauuucaguugguaucgac aaauaucagcugguaauucugggagcuaagccuaaauaugaaacacucggaauuucaguugguaucgac chrX:15402009..15402078:+
chr2R_8370 1.1e+3 2344 1364 0 980 no blat blast ccccuuguugcaaaccucacg gugugauuuguagcaaaguga gugugauuuguagcaaagugauauguauuugaucauccccuuguugcaaaccucacg chr2R:8046393..8046450:-
chr2R_8860 1.1e+3 2163 2120 0 43 no blat blast uauugcuugagaauacacguag acguguaugcucguagcuauaac acguguaugcucguagcuauaaccugaaauccaaauguuauugcuugagaauacacguag chr2R:11952774..11952834:-
chrUextra_26896 1.0e+3 2319 1806 0 513 no blat blast ugguuuaaagaguuuuuaaca cagaaaaguuaccauaggg ugguuuaaagaguuuuuaacaagagggugucagaaaaguuaccauaggg chrUextra:21351679..21351728:-
chr2L_3523 9.2e+2 1828 1807 0 21 no blat blast uuaaguaguggauacaaagggcga gcauuguaugaccuacuuaacu uuaaguaguggauacaaagggcgauuugauauaaaagugucgcauuguaugaccuacuuaacu chr2L:13747620..13747683:-
chrX_32391 8.1e+2 1592 1039 33 520 no blat blast uuuagaauuccuacgcuuuacc caaagcguuuggauucugaaac uuuagaauuccuacgcuuuaccguggcauacgaaauucggcaaagcguuuggauucugaaac chrX:15859994..15860056:-
chr2R_9306 8.0e+2 1581 1411 0 170 no blat blast uauugcacuugagacggccuga ugguucgucacaagggcaauucu ugguucgucacaagggcaauucugcauuuuuuaacuaguauugcacuugagacggccuga chr2R:16471562..16471622:-
chrUextra_21738 7.7e+2 1539 1537 0 2 no blat blast acgcgcaugaauggauua uucguugcgcucguggaca acgcgcaugaauggauuaccgaccgacguguuuucguugcgcucguggaca chrUextra:1468143..1468194:+
chr3R_16986 7.6e+2 1503 1126 0 377 no blat blast aggacgggaaggugucaacguu cauugcacuugucccggccuau aggacgggaaggugucaacguuuugcauuucgaauaaacauugcacuugucccggccuau chr3R:21472244..21472304:+
chr2L_2368 6.3e+2 1254 1166 1 87 no blat blast uaagcguauagcuuuuccccuu gggguaaaacuguacguuauaug gggguaaaacuguacguuauaugugcccuucugugauauucauaagcguauagcuuuuccccuu chr2L:243054..243118:-
chr3R_19161 5.5e+2 1096 859 0 237 no blat blast guggguagaacuuugauuaau uuagucaaagauuuuccccauag guggguagaacuuugauuaauauugcuugaaaaauauuagucaaagauuuuccccauag chr3R:22687070..22687129:-
chr2R_5989 5.4e+2 1063 867 1 195 no blat blast ucggugggacuuucguccguuu ccggaugaugguucacaacgacc ccggaugaugguucacaacgaccgugucauuuaaacgggucggugggacuuucguccguuu chr2R:11544588..11544649:+
chrX_31533 5.2e+2 1038 855 0 183 no blat blast ugagguaaauacgguuggaauuu auccaaccgaauuuggcucgg ugagguaaauacgguuggaauuuugucuuuuaacuauaaauccaaccgaauuuggcucgg chrX:4262693..4262753:-
chr3R_16987 4.8e+2 962 942 1 19 no blat blast aauugcacuagucccggccugc aggccgugcccagugcuuauuug aggccgugcccagugcuuauuuguugcauuuucgaaauacaaauugcacuagucccggccugc chr3R:21477138..21477201:+
chr2L_622 4.7e+2 938 846 0 92 no blat blast ugaguauuccagauugcauag uauacggucugggacacuuuu ugaguauuccagauugcauagcuuugugcuacuauugcuauacggucugggacacuuuu chr2L:5641081..5641140:+
chr3L_10889 3.7e+2 746 330 0 416 no blat blast cccaggaaucaaacauauuauu agauauguuugauauucuugguug agauauguuugauauucuugguuguuucauucaaaaguucacccaggaaucaaacauauuauu chr3L:8564922..8564985:+
chr3L_10478 3.1e+2 631 620 0 11 no blat blast caucgugcagagguuugaguguc cauucaauuucugaacgguaga caucgugcagagguuugaguguccuguguuuugccuaaucgcauucaauuucugaacgguaga chr3L:3299072..3299135:+
chr3R_16308 3.1e+2 612 604 0 8 no blat blast acguauacugaauguauccuga cgguauaccuucaguauacgu acguauacugaauguauccugaguguauccuauccgguauaccuucaguauacgu chr3R:12682003..12682058:+
chr2L_630 2.9e+2 585 583 0 2 no blat blast uuagaauaggggagcuuaacuu aguuaaaagccucuguucuaag uuagaauaggggagcuuaacuuauguuuuugauguuuaaguuaaaagccucuguucuaag chr2L:5642127..5642187:+
chrX_30784 2.8e+2 568 518 0 50 no blat blast aagcgagcaaagaaguaguauuu uauaacuucauuggaagcuaag aagcgagcaaagaaguaguauuuguguuuccaagagcaaauauaacuucauuggaagcuaag chrX:19445735..19445797:+
chr3R_19273 2.5e+2 493 476 0 17 no blat blast uggguaaacucccaaggaucag auccuuggguuucugcucucg uggguaaacucccaaggaucagguggagauugaaucccgauccuuggguuucugcucucg chr3R:23468202..23468262:-
chr2R_9308 2.4e+2 488 153 0 335 no blat blast uauugcacuuuucacagcccga ugcugcggaugggggcagua ugcugcggaugggggcaguacuguuuuuuuaacauugaguauugcacuuuucacagcccga chr2R:16471698..16471759:-
chrX_31531 2.0e+2 408 271 0 137 no blat blast auaauacguuucgaacuaauga auuagguaguuacgcauuaucu auaauacguuucgaacuaaugauuuucaguucauucauuagguaguuacgcauuaucu chrX:4262536..4262594:-
chrX_31529 2.0e+2 408 271 0 137 no blat blast auaauacguuucgaacuaauga auuagguaguuacgcauuaucu auaauacguuucgaacuaaugauuuucaguucauucauuagguaguuacgcauuaucu chrX:4262357..4262415:-
chr2L_624 2.0e+2 402 392 0 10 no blat blast uuugaucaccaguaacugagau uucguuuucuggcaaucaaaag uuugaucaccaguaacugagauuguuucugauacgguuucguuuucuggcaaucaaaag chr2L:5641208..5641267:+
chr2R_5549 1.7e+2 344 324 0 20 no blat blast ucacagcuuuuuguguuuacag guaaauaucuaaaguugaacu guaaauaucuaaaguugaacuuggccaauggcaagucacagcuuuuuguguuuacag chr2R:6773038..6773095:+
chr3R_16917 1.6e+2 331 225 0 106 no blat blast ucucacauuuacauauucaca guggguaucuggaugugguugg guggguaucuggaugugguuggcucuggcgguccucucacauuuacauauucaca chr3R:20484327..20484382:+
chr2R_9205 1.5e+2 312 114 0 198 no blat blast agggaacgguugcugaugaugua uaucacaguggcuguucuuuuu agggaacgguugcugaugauguaguuugaaacucucacaauuuauaucacaguggcuguucuuuuu chr2R:15548226..15548292:-
chr2R_9207 1.3e+2 269 76 0 193 no blat blast agggaacuucugcugcugauaua uaucacaguggcuguucuuuuu agggaacuucugcugcugauauauuauugaaaaacuacuauaucacaguggcuguucuuuuu chr2R:15548378..15548440:-
chr2R_9209 1.3e+2 263 71 0 192 no blat blast agggaauaguugcugugcugua uaucacaguggcuguucuuuuu agggaauaguugcugugcuguaaguuaauauaccauaucuauaucacaguggcuguucuuuuu chr2R:15548516..15548579:-
chr2R_9304 1.1e+2 239 220 0 19 no blat blast uauugcacauucaccggccuga cggacgguauauggguuaauauu cggacgguauauggguuaauauuucauuugucgaauauauugcacauucaccggccuga chr2R:16471392..16471451:-
chrX_30780 1.1e+2 222 198 0 24 no blat blast agcgagaggguauuauguauuca auacauauucuccuuucgcucu agcgagaggguauuauguauucauauuuguaauaucaugauacauauucuccuuucgcucu chrX:19445351..19445412:+
chr4_20414 1.0e+2 202 192 0 10 no blat blast ucuggguguugcguugugugu uucacaugcaacaucccuuaca ucuggguguugcguuguguguaccuguguacaggcguauucacaugcaacaucccuuaca chr4:646768..646828:+
chrX_30793 9.1e+1 184 176 4 4 no blat blast ugagauauucacguugucuaaa uagauaacucgaauaucacauc uagauaacucgaauaucacaucuucaguguucgaaaucugaugagauauucacguugucuaaa chrX:19453079..19453142:+
chrX_30701 8.6e+1 171 135 1 35 no blat blast aacuugacacguugagcucgu gaguuccacuaagcaaguuuu gaguuccacuaagcaaguuuugagaucguuuuaaaaacaaaaacuugacacguugagcucgu chrX:18018408..18018470:+
chr3L_11635 8.0e+1 160 92 0 68 no blat blast aggguugcgacugggcaucgcg ugauuguccaaacgcaauucuug ugauuguccaaacgcaauucuuguugauauucaauauucaaggguugcgacugggcaucgcg chr3L:17308124..17308186:+
chr2L_355 7.8e+1 159 136 0 23 no blat blast ucuggaaucuuuaauucgcag gugaguugaucgauuucgagguu gugaguugaucgauuucgagguuuuggcacacgaauauaaucuggaaucuuuaauucgcag chr2L:4343696..4343757:+
chrUextra_22264 7.5e+1 148 136 0 12 no blat blast uugaaguccacgaaugugccgagc gucggcuauucggcugagugcagc gucggcuauucggcugagugcagcacuccauucgacguugucgaaugcuccuuugaaguccacgaaugugccgagc chrUextra:6829878..6829954:+
chrUextra_27235 7.5e+1 148 136 0 12 no blat blast uugaaguccacgaaugugccgagc gucggcuauucggcugagugcagc gucggcuauucggcugagugcagcacuccauucgacguugucgaaugcuccuuugaaguccacgaaugugccgagc chrUextra:25125239..25125315:-
chrX_30327 6.7e+1 132 122 0 10 no blat blast uugguguuacuucuuacaguga gcuguaaauuguaaucauca gcuguaaauuguaaucaucaaagcguuuucucagagccgcuugguguuacuucuuacaguga chrX:12956124..12956186:+
chr2R_9313 5.4e+1 109 108 0 1 no blat blast ugguaucagcaaaguguuauuuu aguacacguuucugguacu ugguaucagcaaaguguuauuuuuuauguuuauguaaaguacacguuucugguacu chr2R:16472839..16472895:-
chr3R_19506 5.1e+1 115 86 28 1 no blat blast uacuaaaggauugcuacaguug aacugaagcaacgaauca aacugaagcaacgaaucacuccacaauggugggucuacuuuaccaggacugcaucauuacuaaaggauugcuacaguug chr3R:26033042..26033121:-
chr2R_7453 4.6e+1 92 61 22 9 no blat blast uuugauuuagggacaguguuugauu uaaagcguugucccuucugcuuugugc uaaagcguugucccuucugcuuugugcuauacccucuuuuuuagggugaccacccauuucaugguuuaauguaggggggggggggguuugauuuagggacaguguuugauu chr2R:2182874..2182985:-
chrX_30795 4.4e+1 89 83 0 6 no blat blast uguccagugccguaaauugcag ugcaaucuacgccacuggcuuacg ugcaaucuacgccacuggcuuacguugcaaucgaaaaucguguccagugccguaaauugcag chrX:19455284..19455346:+
chr2R_9302 4.4e+1 89 77 0 12 no blat blast uauugcacacuucccggccuuu agggcgggucgugugucagugua agggcgggucgugugucaguguauuuauaucuuagcuauauugcacacuucccggccuuu chr2R:16471270..16471330:-
chr2R_5997 3.3e+1 70 48 0 22 no blat blast uaaucccugaacgacuugcag gugagucucuaggggauuagc gugagucucuaggggauuagcaagcuauaauuucucacuuaaucccugaacgacuugcag chr2R:11833392..11833452:+
chr2R_8632 3.2e+1 69 52 0 17 no blat blast uucaccucucuccauacuuagu guaaguauagagaggaugugauu guaaguauagagaggaugugauugguaaauuccaaaguucaccucucuccauacuuagu chr2R:10120633..10120692:-
chrUextra_21415 2.9e+1 61 59 0 2 no blat blast uguuggugugagacgaucucgagcu uguagucgguuccauugcuuuguga uguagucgguuccauugcuuugugaauuguuggugugagacgaucucgagcu chrUextra:83974..84026:+
chr2RHet_9993 2.3e+1 48 31 0 17 no blat blast uuaaauaucugugugugaaauu uuucacgcgaagauauuuauuu uuaaauaucugugugugaaauuauuuaaaagauuaauuucacgcgaagauauuuauuu chr2RHet:1322857..1322915:-
chrX_30800 2.2e+1 45 38 0 7 no blat blast acacugaauuuggggggaauucu auucuucccgaacucaggcuaau acacugaauuuggggggaauucuuauguauauacaaauucuucccgaacucaggcuaau chrX:19455892..19455951:+
chrX_30035 1.7e+1 36 35 0 1 no blat blast gcggagcgggugggcggccg agcucuucaguguuguug agcucuucaguguuguugugcucggcgagcggagcgggugggcggccg chrX:8603680..8603728:+
chr3R_16302 1.5e+1 31 27 0 4 no blat blast guaagugcaccagauugggaa ucccaguaauguccacuuacaag guaagugcaccagauugggaauaaccuucaaaagcugcaacuuaaauauucccaguaauguccacuuacaag chr3R:12444510..12444582:+
chrX_29557 1.3e+1 29 21 0 8 no blat blast uauguauauccauaucagagagc ucucuauguguauguauguau ucucuauguguauguauguaucuugcuauccauauauguauauccauaucagagagc chrX:1267685..1267742:+
chr3L_10996 5.4 13 10 0 3 no blat blast uggcggauauagaucauugguu aacaagauuuguuucggccgcc uggcggauauagaucauugguuaucccuuaauuaaagcaaacaagauuuguuucggccgcc chr3L:9137715..9137776:+
chr3R_16862 5.0 10 9 0 1 no blat blast ggccagggaagggucgagugc cacucgguccaucccuggcuc ggccagggaagggucgagugcggaucccuugccccagcggcuauucgccugcgcacucgguccaucccuggcuc chr3R:19809217..19809291:+
chr2L_1156 4.9 13 12 0 1 no blat blast gcuguuguguuggccgauugg caauuggacugcacaacggucc gcuguuguguuggccgauuggacaagccgauguuccaauuggacugcacaacggucc chr2L:10858900..10858957:+
chr2L_3328 4.3 9 2 0 7 no blat blast aacgggaguuuccuccauuggg aguggagugagaccucgaguucgg aguggagugagaccucgaguucgggcaaaucugauagccgaacgggaguuuccuccauuggg chr2L:10751876..10751938:-
chr3R_15808 3.9 9 8 0 1 no blat blast cuaaggaaauaguagccgugau cacaguugcuguuucuuuuag cuaaggaaauaguagccgugauuuuacccaagaauuuuucacauaucacaguugcuguuucuuuuag chr3R:6233870..6233937:+
chr3R_16245 3.5 7 5 0 2 no blat blast cgugguggaugcggucgguugg aucgaacgcacccaccacgu aucgaacgcacccaccacgucgcguggacgugguggaugcggucgguugg chr3R:11627094..11627144:+
chrUextra_22082 3.3 19 13 0 6 no blat blast cuuacggauggcaugacagu agugcugccauaaccaugaguga cuuacggauggcaugacaguaagagaauuaugcagugcugccauaaccaugaguga chrUextra:5224194..5224250:+
chrX_31236 2.8 10 4 0 6 no blat blast cgucugugauuuugguuuuuaac uaaaagcacauuucgccagcacgu uaaaagcacauuucgccagcacguguacuuuccaccucgucugugauuuugguuuuuaac chrX:527724..527784:-
chr3L_12968 2.5 14 12 0 2 no blat blast auuaaccaauucgaauugcuu gugaguucgauuggaaaauu gugaguucgauuggaaaauuuaaauuuaauguuuaauuaaccaauucgaauugcuu chr3L:8347285..8347341:-
chr2R_9310 2.5 23 22 0 1 no blat blast aacuggcauucccgucuuacu aaaggcuguuaugcuuauuu aaaggcuguuaugcuuauuuuuguguuuuuuacaaaacuggcauucccgucuuacu chr2R:16472240..16472296:-
chr2R_5434 2.4 6 3 0 3 no blat blast ucacucaaggagguugugaugg ucacacccagguugagugaguc ucacucaaggagguugugauggauaccauaucgaaauaacaucacacccagguugagugaguc chr2R:5508770..5508833:+
chr3LHet_15158 2.4 5 4 0 1 no blat blast uguuucgcgagcaacaaauucg aauuugcugguagcgaaacacc aauuugcugguagcgaaacaccguuguaauugugugcgaggauugacuggccuacuccaccgguguuucgcgagcaacaaauucg chr3LHet:1347699..1347784:-
chr3R_18011 2.3 7 5 0 2 no blat blast uuuucugcuucugccgcugag uuaguuacagcugcaggaagaa uuuucugcuucugccgcugagcaaguuuuaaauauuaccgcuuaguuacagcugcaggaagaa chr3R:6338756..6338819:-
chrX_29797 2.1 4 3 0 1 no blat blast auucucugcgggcuggaacca uuucauaacgcagagaaucau uuucauaacgcagagaaucaucagcgugaaggaaugauucucugcgggcuggaacca chrX:5684815..5684872:+
chr3L_10761 2.1 5 4 0 1 no blat blast uagcacaacuuuuagccgucucu acgauggcguaggugguggua acgauggcguagguggugguaucucaauuuugauggcauagauagcacaacuuuuagccgucucu chr3L:7017300..7017365:+
chr3L_10278 1.5 3 2 0 1 no blat blast gcccguuugggaaacacaccc cuuccucggccacgggucaggg gcccguuugggaaacacacccgugggucucaugccacuggcuuccucggccacgggucaggg chr3L:1230552..1230614:+
chr2L_2874 1.1 13 13 0 0 no blat blast ugugugugggugugcaggu cuacacacgcacacgcgug cuacacacgcacacgcgugggcaggccaauuacaugugugugggugugcaggu chr2L:6722969..6723022:-
chr2R_7837 1.0 28 28 0 0 no blat blast uccaggcugucguccauggagu ucgguggaugucagccagc uccaggcugucguccauggaguuuguguugucagcauucagcucgguggaugucagccagc chr2R:2723058..2723119:-
chrX_30791 1.0 103 103 0 0 no blat blast uuggauuaguuaucaucaaug uuggugaggccaucuccaaug uuggugaggccaucuccaauggauuaguucucaacauuggauuaguuaucaucaaug chrX:19452951..19453008:+
chrX_32099 0.8 38 38 0 0 no blat blast uuuggguugccgguaccgggu ccgauauccacgacccauacc uuuggguugccgguaccgggugguuuccccgauauccacgacccauacc chrX:11604285..11604334:-
chr2R_8122 0.7 26088 25893 0 195 no blat blast ucacaaccuccuugagugagc acucacucaaccuggguguga acucacucaaccugggugugauguuauuucgauaugguauccaucacaaccuccuugagugagc chr2R:5508767..5508831:-
chr2R_7257 0.7 66 66 0 0 no blat blast gacaagcuuauaucgguaggu cuaccgauauaagguuuucua gacaagcuuauaucgguagguauaccuaccgauauaagguuuucua chr2R:1610231..1610277:-
chr2L_2785 0.7 90 87 0 3 no blat blast uguggguugugggcugugugg ccgccaguugauaacccccagc uguggguugugggcuguguggcugugguauaggugccgccaguugauaacccccagc chr2L:6045641..6045698:-
chr3R_19642 0.7 20 20 0 0 no blat blast aguggugugcgugugugccucg cggcacacucgcacacacacacg cggcacacucgcacacacacacgugugccauucugguuuugcaguggugugcgugugugccucg chr3R:27045011..27045075:-
chrX_32610 0.6 34 34 0 0 no blat blast ugcgggccccacguugggcgcca gcgcuugggggggaaguugcgag gcgcuugggggggaaguugcgagugucaguuuuacgauuaccaugcgggccccacguugggcgcca chrX:18893703..18893769:-
chrX_31304 0.6 3 2 0 1 no blat blast ggccauccgcggguucgcu gugggacucgagggcagc gugggacucgagggcagcaagugggccauccgcggguucgcu chrX:1246822..1246864:-
chr3R_16845 0.6 5 4 0 1 no blat blast guggguggugagcggugguug aucgcugcgaguacgagu aucgcugcgaguacgaguaucugauaguaccauuggggcguggccagguggacggggguaguggguggugagcggugguug chr3R:19609042..19609123:+
chr2L_3864 0.6 255994 252592 3 3399 no blat blast uaucacagccagcuuugaggag uucuucaaagugguugugaaaug uucuucaaagugguugugaaauguuugccuuuuuaugccuauucauaucacagccagcuuugaggag chr2L:19570189..19570256:-
chrUextra_25411 0.5 43 32 5 6 no blat blast ucauagcggcugauggcacacga uggggagcauuggcggcaguagug uggggagcauuggcggcaguaguguucgucuggacggcggcggcggcggugguggcauagcgagccgcgucuccaccagcucaucauagcggcugauggcacacga chrUextra:6108421..6108527:-
chr3L_12524 0.5 40 40 0 0 no blat blast uggagcagccaagauagugucuga augcauuauccuggcugaucccggc augcauuauccuggcugaucccggcaaggauuauacgcuggagcagccaagauagugucuga chr3L:2114968..2115030:-
chr3R_15800 0.5 1458745 1457513 1201 31 no blat blast uggcagugugguuagcugguu agccacuaucuucacugccgcc uggcagugugguuagcugguuguguagccaauuauugccguugacaauucacagccacuaucuucacugccgcc chr3R:5926674..5926748:+
chr3R_16770 0.5 23 23 0 0 no blat blast agccggauccggaugucgcgg gccauucgaaucggguagc agccggauccggaugucgcggcgacgacgaggacgagugcacgccgccauucgaaucggguagc chr3R:18306568..18306632:+
chrX_32659 0.5 3 2 0 1 no blat blast cuuuagcagcacaucgagcu guucgacgggugccucaa cuuuagcagcacaucgagcugcagcaguucgacgggugccucaa chrX:19523329..19523373:-
chr2R_6187 0.5 12 12 0 0 no blat blast gauguccggacugcguguggugu acuccgcgucugugagguugc acuccgcgucugugagguugcaggacuccaaugguggauuccugcagauguccggacugcguguggugu chr2R:13369012..13369081:+
chrUextra_26953 0.5 43 32 5 6 no blat blast ucauagcggcugauggcacacga uggggagcauuggcggcaguagug uggggagcauuggcggcaguaguguucgucuggacggcggcggcggcggugguggcauagcgagccgcgucuccaccagcucaucauagcggcugauggcacacga chrUextra:21919956..21920062:-
chrUextra_22630 0.5 43 32 5 6 no blat blast ucauagcggcugauggcacacga uggggagcauuggcggcaguagug uggggagcauuggcggcaguaguguucgucuggacggcggcggcggcggugguggcauagcgagccgcgucuccaccagcucaucauagcggcugauggcacacga chrUextra:11066384..11066490:+
chr2R_8531 0.4 25 24 0 1 no blat blast cggguaugcgggugggcu accuaugucuugaguggau cggguaugcgggugggcuccaauucgagcauugccaugggcggcggucugaagcgcaccuaugucuugaguggau chr2R:9470944..9471019:-
chr3L_10747 0.4 36 5 31 0 no blat blast gacaguaagcucaucggu cggugccccugcuggcuu gacaguaagcucaucggugucaccuccuucgugucgagcgcugguugugaguccggugccccugcuggcuu chr3L:6044632..6044703:+
chrX_29536 0.4 14 14 0 0 no blat blast cguacggauugaacuucuc ugagcuucugugugaacgug cguacggauugaacuucuccugggcgugcuggaugagcuucugugugaacgug chrX:834604..834657:+
chrX_30703 0.4 105053 104654 0 399 no blat blast cuugugcgugugacagcggcu agcugcuggccacugcacaaga agcugcuggccacugcacaagauuagacuuaagacucuugugcgugugacagcggcu chrX:18022267..18022324:+
chr2L_1603 0.4 51888 51581 0 307 no blat blast uaaggcacgcggugaaugcc gguauccacuguaggccuauaug gguauccacuguaggccuauauguauuuccaccauaaggcacgcggugaaugcc chr2L:17566392..17566446:+
chr3R_18505 0.3 179 178 1 0 no blat blast uuacguauacugaagguau acauucaguauacguuuac uuacguauacugaagguauaccggauaggauacacucaggauacauucaguauacguuuac chr3R:12681998..12682059:-
chrX_31999 0.3 15 15 0 0 no blat blast guggguuggguggguggcc uucuucgcucgccaagug guggguuggguggguggccagagguuuuagagaggcccgaggcuucggcuucguucuucguucuucgcucgccaagug chrX:10182878..10182956:-
chr2R_9036 0.2 55 54 1 0 no blat blast ggggguguagcucaggug ccaggaggaugugcaauccgcuu ccaggaggaugugcaauccgcuuuagauugcuggugcgcaggggcagcgcggugggggggggagggggguguagcucaggug chr2R:13722579..13722661:-
chr3R_18971 0.2 56 56 0 0 no blat blast acagcccagggaacgggc ccguccaccagcugucu acagcccagggaacgggcaugcgaucggaucuccauucgcagcuccguccaccagcugucu chr3R:20179146..20179207:-
chr3R_17231 0.2 9327 8996 5 326 no blat blast ugacuagauccacacucauu aguggguggggguccaguguuucaca aguggguggggguccaguguuucacauugauuuucuuaguauuugugacuagauccacacucauu chr3R:25041328..25041393:+
chr3R_16709 0.2 6784 6515 0 269 no blat blast uuucaccuaucguuccauuugcagc guaagugguguagaugaaaca guaagugguguagaugaaacaaauuuaccaacaauuuuguuggauuguuucaccuaucguuccauuugcagc chr3R:18118601..18118673:+
chr3R_16293 0.2 33 33 0 0 no blat blast gcguucccgugggaggca uccccgcagggaagucgucg uccccgcagggaagucgucgcguaaaguugauuccaguaaguggcguucccgugggaggca chr3R:12264574..12264635:+
chr3R_18563 0.2 310 310 0 0 no blat blast ugugggugguggugcuug ggugcugccacggucaau ugugggugguggugcuugcugcagugcagggugcugccacggucaau chr3R:13837299..13837346:-
chr3R_17024 0.2 40 40 0 0 no blat blast auuugugggugguggggg auagccauagcccaugaacau auuuguggguggugggggugguggccaguggaucuguuccgaaagccauugccauagccauagcccaugaacau chr3R:22098655..22098729:+
chrX_32406 0.2 86 86 0 0 no blat blast caaauguuccaauggucgggca cuggcucauugguacauuucau cuggcucauugguacauuucauaaguaccuuaucaaauguuccaauggucgggca chrX:16085302..16085357:-
chr2R_8589 0.2 1837 1837 0 0 no blat blast aucccaccgccgucacca guggccgcugguggagcaa aucccaccgccgucaccagcccaagugcccagaauguggccgcugguggagcaa chr2R:9838341..9838395:-
chrX_31300 0.2 18 18 0 0 no blat blast guuucgugaggucuccgga cucgagacgauuagcggcag cucgagacgauuagcggcaggaaaagcguguuucgugaggucuccgga chrX:1131569..1131617:-
chrUextra_24923 0.1 108 97 9 2 no blat blast uauugcugucgcauuaggugagc gcuguuggugagaagggucguaagc uauugcugucgcauuaggugagccaagcagcugcaagucgucugcugccgauguuguuguaguugcugcuguuggugagaagggucguaagc chrUextra:1518722..1518814:-
chr2L_1168 0.1 41 41 0 0 no blat blast ugggaguguggguaggugg gccugccccccaucuugcc ugggaguguggguagguggccauccugccaguucauauaucacuugauguugccugccccccaucuugcc chr2L:11251111..11251181:+
chrX_29994 0.1 24 24 0 0 no blat blast gggacaugguagaugggcu cuuaccacaugcacccau gggacaugguagaugggcuaccaacagccaggagcuuaccacaugcacccau chrX:7921002..7921054:+
chrX_31491 0.1 134 134 0 0 no blat blast gacagguagucgaggaga ucccagcauuauggugucac gacagguagucgaggagagcagguagugggucucuauggucucuaugcagaucccuugcuccgaucucccagcauuauggugucac chrX:3732081..3732167:-
chrX_30543 0.1 20 20 0 0 no blat blast uggaaggggggcugguugugu ccaaccgguauuuuccacu ccaaccgguauuuuccacucgcguggguggaaggggggcugguugugu chrX:16202922..16202970:+
chrUextra_24967 0.1 108 97 9 2 no blat blast uauugcugucgcauuaggugagc gcuguuggugagaagggucguaagc uauugcugucgcauuaggugagccaagcagcugcaagucgucugcugccgauguuguuguaguugcugcuguuggugagaagggucguaagc chrUextra:1779158..1779250:-
chr3R_18564 0 310 310 0 0 no blat blast ugugggugguggugcuug aguuaacaacaacgcuagu aguuaacaacaacgcuaguggugcugcugugggugguggugcuug chr3R:13837328..13837373:-
chr2R_9035 0 54 54 0 0 no blat blast ggggguguagcucaggug ccuacguugcaucagcau ggggguguagcucaggugagagggggcaggcagguggcagagaagaaauccccugccuacguugcaucagcau chr2R:13722524..13722597:-
chr2R_7874 0 11 11 0 0 no blat blast ucuugcaccguuccaaaagaga ucuuuugcgacgugcaauacu ucuuuugcgacgugcaauacucuguggcagaagucuugcaccguuccaaaagaga chr2R:3294262..3294317:-
chrX_30019 0 53 53 0 0 no blat blast guggguggguggugguggu cucauugcccgauaacug cucauugcccgauaacuguguggguggguggugguggu chrX:8427472..8427510:+
chr3L_12558 0 40 40 0 0 no blat blast ggcaggauggccgagugg acucggguacgcuuguccgc acucggguacgcuuguccgcucguguagaccgaaaucggcggcaggauggccgagugg chr3L:2712027..2712085:-
chr2R_8829 0 56 53 3 0 no blat blast gugggugguuguggguggca caacguuacauccgccgacuc gugggugguuguggguggcaauaucaaaaaccuguccgaggagggcaaggccauccuggaggugggcaacguuacauccgccgacuc chr2R:11853377..11853464:-
chr2L_1155 0 12 12 0 0 no blat blast gcuguuguguuggccgauugg agucgucgccauucgacgccg agucgucgccauucgacgccgacgugggugaguuaccacuuaucguuaagcuguuguguuggccgauugg chr2L:10858851..10858921:+
chr2L_626 0 2224 2222 0 2 no blat blast auaagguagagaaauugaugcuguc acuucaguuucauuaccuuuca auaagguagagaaauugaugcugucuacacuauucagacuucaguuucauuaccuuuca chr2L:5641315..5641374:+
chrX_30848 0 2882 2882 0 0 no blat blast uuguguccacccgggggcgcca gcucccccuaaggagcaacg uuguguccacccgggggcgccauaaaaaagaacuggccaaacuugccuucgcucccccuaaggagcaacg chrX:19880357..19880427:+
chr3L_11955 0 103 103 0 0 no blat blast gcacaagcggcggagcau guucaguucguuugcguua guucaguucguuugcguuaaccgagagcagcuagugcuuauuacgaaugcagcucuagagcagcacaagcggcggagcau chr3L:21938764..21938844:+
chr2L_3034 0 263792 263783 0 9 no blat blast uaucacagccagcuuugaggag gucuucaaaguggcagugacaug gucuucaaaguggcagugacauguugucaacaauauucauaucacagccagcuuugaggag chr2L:8258623..8258684:-
chr3L_11159 0 16 16 0 0 no blat blast cgggaauggugggugggga cccuacuuaucauccguc cccuacuuaucauccguccaguuuugaauugccaauagucgggaauggugggugggga chr3L:11265404..11265462:+
chr2R_6574 0 26786 26667 0 119 no blat blast uggaagacuagugauuuuguug caauaaaucccuugucuucuua uggaagacuagugauuuuguuguuuggucuuugguaauaacaauaaaucccuugucuucuua chr2R:16493586..16493648:+
chr3R_17747 0 51 51 0 0 no blat blast auucuggggcuggagcagguc ccacaccuccaacaccaucugg auucuggggcuggagcaggucuagggaccacaccuccaacaccaucugg chr3R:4176136..4176185:-
chr2R_8927 0 162 161 0 1 no blat blast auucaccguucugaguugg cuuucagcuucggugccau auucaccguucugaguuggccccaagugcacgugggccagcuuucagcuucggugccau chr2R:12782741..12782800:-
chr3R_16747 0 1950 1950 0 0 no blat blast gacgagguggccgagagguuaag ugagcauuuggcugucaagguugc ugagcauuuggcugucaagguugcauaagacgagguggccgagagguuaag chr3R:18223266..18223317:+
chr3R_18775 0 13 13 0 0 no blat blast auccggcgcgaaggacca gucugcggcgucgcu auccggcgcgaaggaccaagucaugcgucugcggcgucgcu chr3R:17168102..17168143:-
chrUextra_24903 0 607 607 0 0 no blat blast auccuaccggcugcgcca gugauuacgguuaggaaau gugauuacgguuaggaaauucauccuaccggcugcgcca chrUextra:1354664..1354703:-