| fileid | Species | Tissue | Date | mapped | mapped_unique | mapped_perfect | unmapped | total | mapped_per | mapped_unique_per | mapped_perfect_per | unmapped_per |
| V054 | A. mellifera | head | 3/9/2009 | 5330346 | 3952205 | 3772337 | 1512295 | 6842641 | 77.9 | 57.76 | 55.13 | 22.1 |
| V105 | D. ananassae | male body | 9/22/2010 | 24986417 | 9600276 | 16975126 | 3699763 | 28686180 | 87.1 | 33.47 | 59.18 | 12.9 |
| V106 | D. ananassae | head | 9/22/2010 | 22882438 | 11675207 | 16852714 | 3195909 | 26078347 | 87.74 | 44.77 | 64.62 | 12.26 |
| V055 | D. ananassae | head | 10/7/2008 | 7704933 | 4076841 | 4920095 | 2795574 | 10500507 | 73.38 | 38.83 | 46.86 | 26.62 |
| V039 | D. ananassae | embryo | 5/21/2008 | 3739593 | 1298526 | 2508301 | 1588267 | 5327860 | 70.19 | 24.37 | 47.08 | 29.81 |
| V108 | D. erecta | head | 11/8/2010 | 27183577 | 17626182 | 22417973 | 766817 | 27950394 | 97.26 | 63.06 | 80.21 | 2.74 |
| V107 | D. erecta | male body | 9/22/2010 | 25037433 | 13562646 | 21203648 | 2444880 | 27482313 | 91.1 | 49.35 | 77.15 | 8.9 |
| V040 | D. erecta | embryo | 5/21/2008 | 4048271 | 1562156 | 3073300 | 1274764 | 5323035 | 76.05 | 29.35 | 57.74 | 23.95 |
| V060 | D. erecta | head | 8/18/2008 | 3240845 | 2602606 | 2682453 | 411736 | 3652581 | 88.73 | 71.25 | 73.44 | 11.27 |
| V109 | D. grimshawi | male body | 2/2/2011 | 28029122 | 7465959 | 22842103 | 3995761 | 32024883 | 87.52 | 23.31 | 71.33 | 12.48 |
| V110 | D. mojavensis | male body | 9/22/2010 | 23781713 | 10393251 | 18518461 | 4852962 | 28634675 | 83.05 | 36.3 | 64.67 | 16.95 |
| V056 | D. mojavensis | head | 10/7/2008 | 5376660 | 4335582 | 4283673 | 970586 | 6347246 | 84.71 | 68.31 | 67.49 | 15.29 |
| V049 | D. mojavensis | head | 6/3/2008 | 3700721 | 3031988 | 2729022 | 742021 | 4442742 | 83.3 | 68.25 | 61.43 | 16.7 |
| V041 | D. mojavensis | embryo | 6/3/2008 | 3209126 | 2099234 | 2767633 | 547276 | 3756402 | 85.43 | 55.88 | 73.68 | 14.57 |
| V111 | D. persimilis | male body | 9/22/2010 | 26053406 | 9292429 | 22608011 | 1658211 | 27711617 | 94.02 | 33.53 | 81.58 | 5.98 |
| V042 | D. persimilis | embryo | 6/3/2008 | 3175748 | 756470 | 2707075 | 495016 | 3670764 | 86.51 | 20.61 | 73.75 | 13.49 |
| V050 | D. persimilis | head | 8/18/2008 | 3018836 | 2309883 | 2581389 | 193949 | 3212785 | 93.96 | 71.9 | 80.35 | 6.04 |
| V057 | D. persimilis | head | 8/18/2008 | 6990119 | 5205447 | 4818071 | 2315479 | 9305598 | 75.12 | 55.94 | 51.78 | 24.88 |
| M021 | D. persimilis | embryo | 3/2/2012 | 14285803 | 3625698 | 12462895 | 481598 | 14767401 | 96.74 | 24.55 | 84.39 | 3.26 |
| V112 | D. pseudoobscura | male body | 11/8/2010 | 13328457 | 5374028 | 7959735 | 5702485 | 19030942 | 70.04 | 28.24 | 41.83 | 29.96 |
| V043 | D. pseudoobscura | embryo | 6/3/2008 | 5387295 | 2330793 | 4334228 | 1203872 | 6591167 | 81.74 | 35.36 | 65.76 | 18.26 |
| V051 | D. pseudoobscura | head | 8/18/2008 | 4246644 | 3288325 | 3566782 | 287861 | 4534505 | 93.65 | 72.52 | 78.66 | 6.35 |
| M022 | D. pseudoobscura | male body | 3/2/2012 | 744836 | 310458 | 506514 | 475499 | 1220335 | 61.04 | 25.44 | 41.51 | 38.96 |
| V113 | D. sechellia | male body | 2/2/2011 | 24997882 | 12690339 | 19095766 | 6513622 | 31511504 | 79.33 | 40.27 | 60.6 | 20.67 |
| V115 | D. sechellia | head | 11/8/2010 | 19541703 | 11208566 | 16098203 | 1890323 | 21432026 | 91.18 | 52.3 | 75.11 | 8.82 |
| V114 | D. sechellia | embryo | 11/8/2010 | 19037300 | 8350348 | 15153341 | 863082 | 19900382 | 95.66 | 41.96 | 76.15 | 4.34 |
| V044 | D. simulans | embryo | 6/3/2008 | 4253971 | 2257379 | 3620416 | 804600 | 5058571 | 84.09 | 44.62 | 71.57 | 15.91 |
| M023 | D. simulans | head | 3/2/2012 | 23820843 | 19718487 | 19718823 | 773124 | 24593967 | 96.86 | 80.18 | 80.18 | 3.14 |
| M024 | D. simulans | male body | 3/2/2012 | 18985266 | 11839282 | 15287569 | 2301236 | 21286502 | 89.19 | 55.62 | 71.82 | 10.81 |
| M025 | D. simulans | embryo | 3/2/2012 | 14369768 | 7013728 | 12605549 | 429497 | 14799265 | 97.1 | 47.39 | 85.18 | 2.9 |
| V116 | D. virilis | male body | 11/8/2010 | 20557619 | 9711583 | 14800604 | 11245260 | 31802879 | 64.64 | 30.54 | 46.54 | 35.36 |
| V053 | D. virilis | head | 8/18/2008 | 6587654 | 4916012 | 3855328 | 1593775 | 8181429 | 80.52 | 60.09 | 47.12 | 19.48 |
| V047 | D. virilis | embryo | 5/21/2008 | 3223792 | 1279944 | 2361992 | 1199519 | 4423311 | 72.88 | 28.94 | 53.4 | 27.12 |
| M027 | D. virilis | male body | 3/2/2012 | 10735668 | 6512302 | 5491117 | 4606850 | 15342518 | 69.97 | 42.45 | 35.79 | 30.03 |
| M028 | D. virilis | head | 3/2/2012 | 7219937 | 4319051 | 3564922 | 962985 | 8182922 | 88.23 | 52.78 | 43.57 | 11.77 |
| V117 | D. willistoni | male body | 2/2/2011 | 29625068 | 7133487 | 24443640 | 3393372 | 33018440 | 89.72 | 21.6 | 74.03 | 10.28 |
| V118 | D. willistoni | embryo | 2/2/2011 | 31867130 | 14179347 | 27781155 | 585223 | 32452353 | 98.2 | 43.69 | 85.61 | 1.8 |
| V119 | D. willistoni | head | 9/22/2010 | 26759330 | 13142128 | 22700222 | 661276 | 27420606 | 97.59 | 47.93 | 82.79 | 2.41 |
| M020 | D. willistoni | head | 3/2/2012 | 19851207 | 13146253 | 16960588 | 943461 | 20794668 | 95.46 | 63.22 | 81.56 | 4.54 |
| V058 | D. yakuba | head | 3/9/2009 | 6001276 | 4303994 | 4567848 | 1424860 | 7426136 | 80.81 | 57.96 | 61.51 | 19.19 |
| V120 | D. yakuba | male body | 2/2/2011 | 32054510 | 8008825 | 28896725 | 301865 | 32356375 | 99.07 | 24.75 | 89.31 | 0.93 |
| V046 | D. yakuba | embryo | 6/3/2008 | 3051610 | 1634797 | 2697080 | 408232 | 3459842 | 88.2 | 47.25 | 77.95 | 11.8 |
| V052 | D. yakuba | head | 6/3/2008 | 2597536 | 1936592 | 2079991 | 326041 | 2923577 | 88.85 | 66.24 | 71.15 | 11.15 |
| M026 | D. yakuba | head | 3/2/2012 | 7407553 | 4739168 | 6156370 | 230286 | 7637839 | 96.98 | 62.05 | 80.6 | 3.02 |