sblock53072- 12- and 20-way alignments

sblock53072	chr2R:20896404-20896491 -	Candidate
	[View on UCSC Genome Browser {Cornell Mirror}]	intron

Legend:

   mature strand at position 20896418-20896439
   star strand at position 20896466-20896484
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chr2R:20896389-20896506 -	AAACGA----------------AAATAACGAAACGC-------------------------------------TCGATTGTCATGAGTGGTC--------------------CGT--------------------------------------C----AGATTGTCTAAAGGCTAAAATTTCTTTG--------CGACTGACGAACGGCACATGAGACGGGTGGAAATAGTTA----AGAAATTT
droSim1	chr2R:19348259-19348395 -	AAACGA----------------AAATAACGAAACGC-------------------------------------TCGATTGTCATGAGTGGTC--------------------CGT--------------------------CGGACGGTGGCAC----AGACTGTCTAAAGGCTAAAAAGTCTTTGCGACTGAGCGACTGACGAACGGCACATGAGACGGGTGGGAATAGTTA-----AAAATTT
droSec1	super_23:753669-753783 -	AAACGA----------------AAATAACGAAACGC-------------------------------------TCGATTGT--------------------------------------------------------------------GGCCC----AGACTGTCTAAAGGCTAAAAAGTCTTTGCGACTGAGCGACTGACGAACGGCACATGAGACGGGTGGGAATAGTTA-----AAAATTT
droYak2	chr2R:20861288-20861417 -	AAACGA----------------AAATAACGAAACGC-------------------------------------TCGATTGTCATGAGCGGTC--------------------CGT--------------------------CGGACGGTGGGAC----AGACTGTCTAAAGGCTAAAAAGTCTTTG--------CGGCTGACGAACGGCACATGGGACGGGCGGGAATAGTTA----AGAAATTT
droEre2	scaffold_4845:22271655-22271786 -	AAACGA----------------AAATAACGAAACGC-------------------------------------TCGATTGTCATGAGTGGTCCGCC----------------CGT--------------------------CGGACGGCGGGAC----AGACTGTCTAAAGGCTAAAAAGTCT--G--------CGAATGACGAACGGCACATGAGACGGGCGGGAATAGTTA----GGAAATTT
droAna3	scaffold_13266:12188779-12188871 -	AAGAGA-------C--A-----AAGTAACGAAACGA-------------------------------------GCGGgGGt---gGGtgGGt--------------------gGt--------------------------tgGGtgGGt------------------------------------------------gTGtgGGCGACACATGAGACTGGCGAGAAATGTAA----AGAAATTT
dp4	Unknown	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer1	super_2:2188699-2188825 -	AAACAC-------AAAAAAATAAAATAAAGAA----C--------GAGCCGAATGGCACGGCTTCGCAAACGGTCGATTGTCATGACTTGTC--------------------TGT--------------------------CA------------------------------------GTCATTC------------AGACGAACGA-ACAGACGACGGCAAAGAAATGTTA----AGAAATTT
droWil1	scaffold_180697:1942494-1942595 -	GttGGttttTttttttgt-----tttttCGGCACGG-------------------------------------TCGATTGTCA--------------------------------------------------------------------GAGAGACAGAC----TTTGG-------------------------AGAGACAGCCACAGCAACAAACTGTCAAGATATGTAA----AGAAATTT
droVir3	scaffold_12875:17133812-17133943 +	GttGtt-------GGtGt-----tttttCG-------------------------GCACGACTTTGC----AAACGATTGTCATGAGTTGTCAGGCtGtgtGtgtGtGtGgGtGtGtGtGtGtGGGGGtGtGtGtGtGtGtCGGACAGTTGGAC----AGA----------------------------------------------------------------TAATGTAA----AGAAATTT
droMoj3	scaffold_6496:10865763-10865909 -	tGtGtttGtGtGTAAAGAGTAGAACTGCGGGA----GGGAGTGTGGAAGAAAACGGCACGACTTTGC-GACAGACGATTGTCAGG----------CAG------------------------------------------------------------------------------AGTGGCAGAGTGACAGAGACAGCGACAGACGGCGAGACAGTTGGACAGATAATGTA-----AGAAATTT
droGri2	scaffold_15245:16666082-16666207 +	tttgtG-------tttGt-----tttttCG-------------------------GCACGACTTTTGCGACTGACGATTGTCATGAGTTGTg--------------------tG----------------------------GgtGGgtttgtG----tgtGtg------------------------------tGtgtGGgGttgtGtgtGtgtGtgGGGgtGtTAATGTAAAGAAAGAAATTT

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chr2R:20896389-20896506 -	NA	AA-ACGAAAAT--AACGAAA-----------------------------------------------------------------CGCTCGA---TTGTCATGAGT-GGTCCGT----CA---------------------------------GATTGTCTAAAGGCTAAAATTTCTT--------TGCGACTGACGAACGGCACATGAGAC--------GGGTGGAAATAGTTA----AGAAATTT
droSim1	chr2R:19348259-19348395 -	1	AA-ACGAAAAT--AACGAAA-----------------------------------------------------------------CGCTCGA---TTGTCATGAGT-GGTCCGT----CGGACGGTGGCA---------------------CAGACTGTCTAAAGGCTAAAAAGTCTTTGCGACTGAGCGACTGACGAACGGCACATGAGAC--------GGGTGGGAATAGTTA-----AAAATTT
droSec1	super_23:753669-753783 -	1	AA-ACGAAAAT--AACGAAA-----------------------------------------------------------------CGCTCGA---TTGT---------------------------GGCC---------------------CAGACTGTCTAAAGGCTAAAAAGTCTTTGCGACTGAGCGACTGACGAACGGCACATGAGAC--------GGGTGGGAATAGTTA-----AAAATTT
droYak2	chr2R:20861288-20861417 -	1	AA-ACGAAAAT--AACGAAA-----------------------------------------------------------------CGCTCGA---TTGTCATGAGC-GGTCCGT----CGGACGGTGGGA---------------------CAGACTGTCTAAAGGCTAAAAAGTCTT--------TGCGGCTGACGAACGGCACATGGGAC--------GGGCGGGAATAGTTA----AGAAATTT
droEre2	scaffold_4845:22271655-22271786 -	1	AA-ACGAAAAT--AACGAAA-----------------------------------------------------------------CGCTCGA---TTGTCATGAGT-GGTCCGCCCGTCGGACGGCGGGA---------------------CAGACTGTCTAAAGGCTAAAAAGTCT----------GCGAATGACGAACGGCACATGAGAC--------GGGCGGGAATAGTTA----GGAAATTT
droEug1	scf7180000409464:1425212-1425305 +	1	AC-AAGAAAAT--AACGACA-CGAGCG----------T--------------------------------------------AAGCGC------------------------------------GCGGGA---------------------CAGACCGTCG--------AATAGTCTT--------A--------GGGCCGACTCATGAGAC--------AAT--AGAAACTTTG----AGAGATTT
droBia1	scf7180000301754:5870493-5870638 -	1	AACACGAAAAT--AACGAAA-CGAACG----------C-------------------------------------GAAC-GCGAACGCTCGA---TTGTCATGAGT-TGTCCGT----CGGACGGTGGGG---------------------CGGACCGTCTGAAAGTCGGACAGTCTT--------AGGGACCGACGG-CGACACATGAGAC--------GGGCGAGAGACGTAC----AGAAATTT
droTak1	scf7180000415805:314121-314283 +	1	AACACGAAAAT--AACGAAA-CGAACG----------C--------------------------------------------AAACGCTCGA---TTGTCATGAGTTTGTCCGT----CGAACGGCGGGACGGACGGACAGACGGACAGAACAGACCGTCTTAAAGTCAGAGAGTCTT--------AGGGACTGACGGCCGACACATGAGAC--------AGGCGAGAAACGTAA----AGAAATTT
droEle1	scf7180000491107:285842-285979 +	1	AACACGAAAAT--AACGAAA-CGAACG----------C--------------------------------------------AAACGCTCGA---TTGTCATGAGC-AGTCCGT----TGGACAGTGGGACTAG-----------------CGAACAGCCTCAGAGACGAAAAGTCTG--------AGAGACT-------GACACATAAGAC--------AGGCGAGAAACGTAA----AGAAATTT
droRho1	scf7180000778233:36343-36477 -	1	AACACGAAAAT--AACGAAA-----------------------------------------------------------------CGAACGA---TTGTCATGAGC-TGTCCGT----CGGACAGTGGGACTAA-----------------CGGACCGCCTTACAGACGGAAAGTCTG--------AGGGACTGACGACCGACACATGAGAG--------GGGCAAGAAACGTAA----AGATATTT
droFic1	scf7180000453858:596758-596859 +	1	AACATGAAAAT--AACGAAA-CAAGCG----------C--------------------------------------------AAACGCTCGA---TTGTCATGAGT-TGTTTGT----CTTACGCTGGGA---------------------CACA----------------------------------------------CCACATGAGAC--------GGCCGAGAAGCGTAG----AG-AATTT
droKik1	scf7180000302366:1044859-1045012 -	1	AAAACACAAAA--TACGAAA-C----------------------------------------------GGCACGGCTTC-GCAAACGCTCT-CGATTGTCATGAGT-TGTCAGT----CGGC----GGGTCGGTTGGTCGGTTGGT-----GGTACCGCCAGCCAGACGAAAAGGCTG--------AGGGACT-------GACACATGAGAC--------AGGC-AGAAATGTAA----AGAAATTT
droAna3	scaffold_13266:12188779-12188871 -	2	AA-GAGACAAAGTAACGAAA-C----------------------------------------------------------------GAGCGG---CG-----------------------GACGGACGGACGAA-----------------CGGAC--------------------------------GGACTGACGG-CGACACATGAGAC--------TGGCGAGAAATGTAA----AGAAATTT
droBip1	scf7180000396547:292755-292809 +	1	CT-GAA-AGAT--AAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCAAGAGACACATGAGAC--------TGGCGAGAAATGTAA----AGAAATTT
dp4	Unknown	NA	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer1	super_2:2188699-2188812 -	1	TA-AAATAAAG--AACGAGC-CGAA------------------------------------------TGGCACGGCTTC-GCAAACGGTCGA---TTGTCATGACT-TGTCTGT----CAGTCATTCAGACGAA-----------------CGA-------------------------------------------------ACAGACGAC--------GGCAAAGAAATGTTA----AGAAATTT
droWil1	scaffold_180697:1942494-1942595 -	3	GA-AGGAAAAT--AAAAAA--CAAA---------------------------------------AAACGGCA-------------CGGTCGA---TTGTCA-----------------------GAGAGA---------------------CAGACTTTGG-----------------------------AGAGACAGCCACAGCAACAAAC--------TGTCAAGATATGTAA----AGAAATTT
droVir3	scaffold_12875:17133808-17133943 +	2	AG-AAGAAGAA--GGAGAAA--------------------------------------------AAACGGCACGACTTT-G----CAAACGA---TTGTCATGAGT-TGTCAGG----CAGACAG---------------------------------ACAGAGAGCGAGAGAGAGAG--------------AGGGGGAGAGAGAGAGAGACGGACAGTTGGACAGATAATGTAA----AGAAATTT
droMoj3	scaffold_6496:10865763-10865924 -	2	GA-GAGAGAGA--GAGAGAGAGAAAGAGAGTAAAGAGTAGAACTGCGGGAGGGAGTGTGGAAGAAAACGGCACGACTTT-GCG-ACAGACGA---TTGTCAGG-------------------CAGAGTGG---------------------CAGAG------------------------TGACAGAGACAGCGACAGACGGCGAGACAGTT--------GGACAGATAATGTA-----AGAAATTT
droGri2	scaffold_15245:16666095-16666207 +	1	AA-ACG---------------------------------------------------------------GCACGACTTTTGCG-ACTGACGA---TTGTCATGAGT-TGTCAGG----CAGGCAAACAGACAGA-----------------CAG------------------------------------ACAGGCGAACAGACAGACAGAC--------GGGCAGATAATGTAAAGAAAGAAATTT

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

AAACGA----------------AAATAACGAAACGC-------------------------------------TCGATTGTCATGAGTGGTC--------------------CGT--------------------------------------C----AGATTGTCTAAAGGCTAAAATTTCTTTG--------CGACTGACGAACGGCACATGAGACGGGTGGAAATAGTTA----AGAAATTT

Size

Hit Count

Total Norm

droSim1

AAACGA----------------AAATAACGAAACGC-------------------------------------TCGATTGTCATGAGTGGTC--------------------CGT--------------------------CGGACGGTGGCAC----AGACTGTCTAAAGGCTAAAAAGTCTTTGCGACTGAGCGACTGACGAACGGCACATGAGACGGGTGGGAATAGTTA-----AAAATTT	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
...........................................................................................................................................................................GATAAAAAGTCGTTGCGA........................................................	18	1	2.00	0.00	2.00	0.00	0.00
...............................AACGC-------------------------------------TCGATTGTCATGA...............................................................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
............................................................................................................................................................................................ACTGAGCGACTGACGAACGG.....................................	20	1	1.00	0.00	0.00	1.00	0.00

droSec1

AAACGA----------------AAATAACGAAACGC-------------------------------------TCGATTGT--------------------------------------------------------------------GGCCC----AGACTGTCTAAAGGCTAAAAAGTCTTTGCGACTGAGCGACTGACGAACGGCACATGAGACGGGTGGGAATAGTTA-----AAAATTT	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
.............................GAAACGA-------------------------------------TCGATTGT--------------------------------------------------------------------TGC.............................................................................................	18	1	1.00	0.00	1.00	0.00

droYak2

AAACGA----------------AAATAACGAAACGC-------------------------------------TCGATTGTCATGAGCGGTC--------------------CGT--------------------------CGGACGGTGGGAC----AGACTGTCTAAAGGCTAAAAAGTCTTTG--------CGGCTGACGAACGGCACATGGGACGGGCGGGAATAGTTA----AGAAATTT	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.............................................................................................................................................CGGACGGTGGGAC----AGACTGT................................................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00

droEre2

AAACGA----------------AAATAACGAAACGC-------------------------------------TCGATTGTCATGAGTGGTCCGCC----------------CGT--------------------------CGGACGGCGGGAC----AGACTGTCTAAAGGCTAAAAAGTCT--G--------CGAATGACGAACGGCACATGAGACGGGCGGGAATAGTTA----GGAAATTT	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
...........................................................................GATTGTCAAGAGTGGACC........................................................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................................................................TGTCTAAAGGCTAAAAAGTC...............................................................	20	1	1.00	0.00	0.00	0.00	1.00

droAna3

AAGAGA-------C--A-----AAGTAACGAAACGA-------------------------------------GCGGgGGt---gGGtgGGt--------------------gGt--------------------------tgGGtgGGt------------------------------------------------gTGtgGGCGACACATGAGACTGGCGAGAAATGTAA----AGAAATTT	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
......................................................................................GTGGGT--------------------GGT--------------------------TGGGTGGGT------------------------------------------------...............................................	18	1	3099.00	142.00	2940.00	17.00	0.00
...............................................................................GT---GGGTGGAT--------------------GGG--------------------------TGGGT...................................................................................................	18	3	219.33	4.67	213.00	1.67	0.00
......................................................................................GTGGGT--------------------GGA--------------------------TGGGTGGGT------------------------------------------------...............................................	18	3	219.33	4.67	213.00	1.67	0.00
...............................................................................GT---GGGTGGGT--------------------GGT--------------------------TGGGT...................................................................................................	18	2	187.00	4.00	182.00	1.00	0.00
............................................................................GCGGT---GGGTGGGT--------------------GGT--------------------------AG......................................................................................................	18	1	355.00	1.00	350.00	4.00	0.00
...............................................................................GT---GGGTGGGT--------------------GGT--------------------------AGGGT...................................................................................................	18	2	130.50	1.00	127.50	2.00	0.00
......................................................................................GTGGGT--------------------GGT--------------------------TGGGTGGGT------------------------------------------------C..............................................	19	1	219.00	24.00	192.00	3.00	0.00
......................................................................................GTGGGT--------------------GGT--------------------------TGGGTGGTT------------------------------------------------G..............................................	19	3	71.67	3.00	66.67	1.67	0.33
...........................................................................GTGGGT---GGTTGGGT--------------------GGT--------------------------TG......................................................................................................	19	3	71.67	3.00	66.67	1.67	0.33
...............................................................................AT---GGGTGGGT--------------------GGA--------------------------TGGGT...................................................................................................	18	1	193.00	0.00	191.00	2.00	0.00
...........................................................................GTGGGT---GGGTGGGT--------------------GGT--------------------------C.......................................................................................................	18	1	180.00	0.00	179.00	1.00	0.00
...............................................................................GT---GGGTGGGT--------------------GGT--------------------------TxGGTGTG................................................................................................	20	3	59.67	10.67	48.33	0.67	0.00
......................................................................................GTGGGT--------------------GGC--------------------------TGGGTGGGC------------------------------------------------...............................................	18	1	174.00	1.00	173.00	0.00	0.00
...........................................................................GTGGGT---GGGTGGGT--------------------GGT--------------------------A.......................................................................................................	18	1	170.00	17.00	153.00	0.00	0.00
...............................................................................GT---GGGTGGGT--------------------GGA--------------------------TGGGT...................................................................................................	18	4	40.50	1.00	39.50	0.00	0.00
......................................................................................GTGGGT--------------------GGG--------------------------TGGATGGGT------------------------------------------------...............................................	18	4	40.50	1.00	39.50	0.00	0.00
...........................................................................GTGGGT---GGGTGGGT--------------------GGT--------------------------T.......................................................................................................	18	4	34.00	2.00	32.00	0.00	0.00
......................................................................................GTGGGT--------------------GGG--------------------------TGGGTGGTT------------------------------------------------...............................................	18	4	34.00	2.00	32.00	0.00	0.00
...............................................................................GT---GGGTGGGT--------------------GGG--------------------------TGGTT...................................................................................................	18	4	34.00	2.00	32.00	0.00	0.00
............................................................................GCGGT---GGGTGGGA--------------------GGT--------------------------TG......................................................................................................	18	1	129.00	0.00	125.00	4.00	0.00
......................................................................................GTGGGT--------------------GGA--------------------------TGGGTGGGT------------------------------------------------GG.............................................	20	2	59.00	5.00	53.50	0.50	0.00
...............................................................................GT---GGGTGGAT--------------------GGG--------------------------TGGGTGG.................................................................................................	20	2	59.00	5.00	53.50	0.50	0.00
...............................................................................GT---GGGTGGGT--------------------GGT--------------------------TGGGAG..................................................................................................	19	1	114.00	1.00	113.00	0.00	0.00
.......................................................................................TGGGT--------------------GGT--------------------------TGGGTGGGT------------------------------------------------C..............................................	18	2	53.50	0.00	52.00	1.00	0.50
...........................................................................TTGGGT---GGGTGGGT--------------------GGT--------------------------TGG.....................................................................................................	20	1	106.00	6.00	98.00	2.00	0.00
......................................................................................GTGGGT--------------------GGT--------------------------AGGGTGGGA------------------------------------------------...............................................	18	1	104.00	9.00	95.00	0.00	0.00
...........................................................................TTGGGT---GGGTGGGT--------------------GGT--------------------------T.......................................................................................................	18	1	104.00	4.00	99.00	1.00	0.00
............................................................................GCGGT---GGGTGGGT--------------------GGT--------------------------GG......................................................................................................	18	1	95.00	0.00	95.00	0.00	0.00
...............................................................................AT---GGGTGGGT--------------------GGT--------------------------TGGGT...................................................................................................	18	2	45.00	0.50	44.00	0.50	0.00
......................................................................................GTGGGT--------------------GGT--------------------------TGGGTGGGT------------------------------------------------CA.............................................	20	1	90.00	5.00	82.00	3.00	0.00
...............................................................................GT---GGGTGGGT--------------------GGT--------------------------TGGGA...................................................................................................	18	2	39.00	0.00	39.00	0.00	0.00
......................................................................................GTTGGT--------------------GGT--------------------------TGGGTGGGT------------------------------------------------...............................................	18	1	77.00	1.00	76.00	0.00	0.00
...............................................................................GT---GGGTGGGT--------------------GGT--------------------------TGGGTG..................................................................................................	19	1	72.00	5.00	67.00	0.00	0.00
..................................................................................................................G--------------------------TGGGTGGGT------------------------------------------------GxGTGGGCG......................................	18	2	36.00	0.50	35.00	0.50	0.00
...............................................................................GT---GGGTGGGT--------------------GGx--------------------------TGGGCG..................................................................................................	18	2	36.00	0.50	35.00	0.50	0.00
...........................................................................CTGGGT---GGGTGGGT--------------------GGT--------------------------TG......................................................................................................	19	2	33.50	1.50	32.00	0.00	0.00
...........................................................................GGGTGT---GGGTGGGT--------------------GGT--------------------------AG......................................................................................................	19	1	65.00	0.00	65.00	0.00	0.00
......................................................................................GTGGGT--------------------GGA--------------------------TGGGTGGGT------------------------------------------------GT.............................................	20	2	28.00	2.50	25.00	0.50	0.00
......................................................................................GAGGGT--------------------GGT--------------------------TGGGGGGGT------------------------------------------------...............................................	18	1	53.00	2.00	51.00	0.00	0.00
...............................................................................GT---GGGTGGGT--------------------GGT--------------------------TGGGTT..................................................................................................	19	2	26.00	1.50	24.50	0.00	0.00
...........................................................................GTGGGT---GGTTGGGT--------------------GGT--------------------------TGGG....................................................................................................	21	3	17.00	1.00	15.67	0.33	0.00
......................................................................................GTGGGT--------------------GGT--------------------------TGGGTGGTT------------------------------------------------GGG............................................	21	3	17.00	1.00	15.67	0.33	0.00
............................................................................TGGGT---GGGTGGGT--------------------GGT--------------------------TGG.....................................................................................................	19	3	16.33	2.33	13.67	0.33	0.00
................................................................................T---GGGTGGGT--------------------GGG--------------------------TGGTTGG.................................................................................................	19	3	16.33	2.33	13.67	0.33	0.00
...............................................................................GT---GGGTGGGT--------------------GGT--------------------------GGGCT...................................................................................................	18	1	46.00	0.00	46.00	0.00	0.00
...........................................................................GTGGGT---GGGTGGGT--------------------GGC--------------------------T.......................................................................................................	18	4	11.25	0.00	11.25	0.00	0.00
...............................................................................GT---GGGTGGGT--------------------GGG--------------------------TGGCT...................................................................................................	18	4	11.25	0.00	11.25	0.00	0.00
......................................................................................GTGGGT--------------------CGG--------------------------TGGGTGGGT------------------------------------------------...............................................	18	3	15.00	0.33	14.67	0.00	0.00
......................................................................................GTGGGT--------------------GGT--------------------------TGGGTxGGT------------------------------------------------GGG............................................	20	1	45.00	8.00	36.00	1.00	0.00
...............................................................................GT---GGGTCGGT--------------------GGG--------------------------TGGGT...................................................................................................	18	3	15.00	0.33	14.67	0.00	0.00
......................................................................................GTGGGT--------------------GGG--------------------------TGGGTGGCT------------------------------------------------...............................................	18	4	11.25	0.00	11.25	0.00	0.00
..................................................................................................................G--------------------------TGGGTGGGT------------------------------------------------GTGTGGCC.......................................	18	2	19.50	0.00	19.50	0.00	0.00
...........................................................................CTGGGT---GGGTGGGT--------------------GGT--------------------------T.......................................................................................................	18	2	19.00	1.00	18.00	0.00	0.00
...........................................................................TTGGGT---GGGTGGGT--------------------GGT--------------------------TG......................................................................................................	19	1	37.00	4.00	33.00	0.00	0.00
......................................................................................GTGGGT--------------------GGT--------------------------TGGGTGGGT------------------------------------------------GG.............................................	20	2	17.00	0.50	16.00	0.50	0.00
...............................................................................GT---GGGTGGTT--------------------GGG--------------------------TGGGTGG.................................................................................................	20	2	17.00	0.50	16.00	0.50	0.00
............................................................................TGGGT---GGTTGGGT--------------------GGT--------------------------TGGG....................................................................................................	20	3	10.33	0.67	9.33	0.33	0.00
.......................................................................................TGGGT--------------------GGT--------------------------TGGGTGGTT------------------------------------------------GGG............................................	20	3	10.33	0.67	9.33	0.33	0.00
...............................................................................GT---GGGTGGGT--------------------GGA--------------------------TGGGTT..................................................................................................	19	2	15.00	0.00	15.00	0.00	0.00
............................................................................GTGGC---GGGTGGGT--------------------GGT--------------------------TGG.....................................................................................................	19	1	28.00	3.00	25.00	0.00	0.00
...............................................................................GC---GGGTGGGT--------------------GGT--------------------------TGGTTG..................................................................................................	19	2	13.50	0.50	13.00	0.00	0.00
...........................................................................GCGGGT---GGGTGGTT--------------------GGT--------------------------TG......................................................................................................	19	2	13.50	0.50	13.00	0.00	0.00
...............................................................................GT---GGGTGGGT--------------------CGG--------------------------TGGGT...................................................................................................	18	3	9.00	0.00	9.00	0.00	0.00
......................................................................................GTGGGT--------------------GGG--------------------------TCGGTGGGT------------------------------------------------...............................................	18	3	9.00	0.00	9.00	0.00	0.00
......................................................................................GTGGGT--------------------GGA--------------------------TGGGTGGGT------------------------------------------------G..............................................	19	3	8.67	0.33	8.33	0.00	0.00
......................................................................................GTGGGT--------------------GGT--------------------------TTGGTGGGT------------------------------------------------...............................................	18	1	26.00	1.00	25.00	0.00	0.00
...............................................................................GT---GGGTGGAT--------------------GGG--------------------------TGGGTG..................................................................................................	19	3	8.67	0.33	8.33	0.00	0.00
...........................................................................GGGTGT---GGGTGGGT--------------------GGT--------------------------A.......................................................................................................	18	1	24.00	0.00	23.00	1.00	0.00
......................................................................................GTGGGT--------------------GGT--------------------------TGGGTTGGT------------------------------------------------...............................................	18	2	12.00	0.00	12.00	0.00	0.00
...........................................................................GTGGGT---GGGTGGGG--------------------GGT--------------------------T.......................................................................................................	18	1	23.00	3.00	20.00	0.00	0.00
......................................................................................GTGGGT--------------------GGT--------------------------TGGGTGGTA------------------------------------------------G..............................................	19	1	23.00	0.00	23.00	0.00	0.00
...........................................................................GTGGGT---GGATGGGT--------------------GGT--------------------------TG......................................................................................................	19	2	11.50	1.00	10.50	0.00	0.00
......................................................................................GTGGGT--------------------GGA--------------------------TGGGTGGTT------------------------------------------------G..............................................	19	2	11.50	1.00	10.50	0.00	0.00
...............................................................................GT---GGGTGGGT--------------------GTT--------------------------TGGGTGGTT------------------------------------------------...............................................	22	1	22.00	0.00	22.00	0.00	0.00
................................................................................T---GGGTGGGT--------------------GGT--------------------------TGGGAG..................................................................................................	18	1	22.00	0.00	22.00	0.00	0.00
......................................................................................GTGGGT--------------------GGA--------------------------TGGGTGGAT------------------------------------------------...............................................	18	1	22.00	1.00	20.00	1.00	0.00
...............................................................................GT---GGGTGGGT--------------------GGT--------------------------TGGCC...................................................................................................	18	1	21.00	1.00	20.00	0.00	0.00
......................................................................................GTGGGG--------------------GGT--------------------------TGGGTGGGT------------------------------------------------...............................................	18	1	21.00	2.00	18.00	1.00	0.00
...............................................................................TT---GGGTGGGT--------------------GGT--------------------------TGGGG...................................................................................................	18	1	21.00	0.00	21.00	0.00	0.00
..................................................................................................................T--------------------------TGGGTGGTT------------------------------------------------GGGTGGGC.......................................	18	2	10.00	0.00	10.00	0.00	0.00
......................................................................................GTGTGT--------------------GGT--------------------------TGGGTGGGT------------------------------------------------...............................................	18	2	10.00	0.00	10.00	0.00	0.00
......................................................................................TTGGGT--------------------GGT--------------------------TGGGTGGGC------------------------------------------------...............................................	18	2	10.00	0.00	10.00	0.00	0.00
......................................................................................TTGGGT--------------------GGT--------------------------TGGGTGGGT------------------------------------------------...............................................	18	2	10.00	0.00	10.00	0.00	0.00
......................................................................................ATGGGT--------------------GGA--------------------------TGGGTGGGT------------------------------------------------...............................................	18	1	19.00	1.00	18.00	0.00	0.00
................................................................................T---GGGTGGGT--------------------GGG--------------------------TGGTTG..................................................................................................	18	5	3.80	0.00	3.80	0.00	0.00
.........................................................................GxGGGGAT---GGGTGGGT--------------------GGT--------------------------A.......................................................................................................	19	1	19.00	1.00	18.00	0.00	0.00
.......................................................................................TGGGT--------------------GGG--------------------------TGGGTGGTT------------------------------------------------G..............................................	18	5	3.80	0.00	3.80	0.00	0.00
............................................................................TGGGT---GGGTGGGT--------------------GGT--------------------------TG......................................................................................................	18	5	3.80	0.00	3.80	0.00	0.00
......................................................................................GTGGGT--------------------GGT--------------------------TGTGTGGGT------------------------------------------------...............................................	18	1	19.00	0.00	19.00	0.00	0.00
...............................................................................GT---GGGTGGGT--------------------GGT--------------------------AGGGTT..................................................................................................	19	2	9.00	0.00	8.00	1.00	0.00
......................................................................................GTGGGT--------------------GGA--------------------------TGGGTGGGT------------------------------------------------GTA............................................	21	1	18.00	3.00	15.00	0.00	0.00
......................................................................................GTGGGT--------------------GGT--------------------------TGGGTGGTT------------------------------------------------...............................................	18	3	6.00	0.00	6.00	0.00	0.00
...........................................................................GTGGGT---GGTTGGGT--------------------GGT--------------------------T.......................................................................................................	18	3	6.00	0.00	6.00	0.00	0.00
......................................................................................GTGGGT--------------------GGT--------------------------TGGGTGGGT------------------------------------------------T..............................................	19	1	17.00	4.00	13.00	0.00	0.00
............................................................................GCGGT---GGGTGGGT--------------------GGT--------------------------AGG.....................................................................................................	19	1	17.00	0.00	17.00	0.00	0.00
......................................................................................GTGGGT--------------------GGA--------------------------TGGGTGGAT------------------------------------------------G..............................................	19	1	17.00	1.00	16.00	0.00	0.00

dp4

-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

droPer1

AAACAC-------AAAAAAATAAAATAAAGAA----C--------GAGCCGAATGGCACGGCTTCGCAAACGGTCGATTGTCATGACTTGTC--------------------TGT--------------------------CA------------------------------------GTCATTC------------AGACGAACGA-ACAGACGACGGCAAAGAAATGTTA----AGAAATTT	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.......................................................................................................................................................................................................GACGAACGA-ACAGCCGCC...........................	18	1	2.00	0.00	0.00	0.00	0.00	2.00
..........................................................................CGATTATCATCACTTGTC--------------------TGT--------------------------........................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.....................................................................................................................................................................................CATTC------------AGACGAACGA-ACAGAC..............................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
...............AAAAATxAAATAAATAA----C--------GAG.....................................................................................................................................................................................................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
...................ATAAAATGAAGAA----C--------AAGC....................................................................................................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00	0.00

droWil1

GttGGttttTttttttgt-----tttttCGGCACGG-------------------------------------TCGATTGTCA--------------------------------------------------------------------GAGAGACAGAC----TTTGG-------------------------AGAGACAGCCACAGCAACAAACTGTCAAGATATGTAA----AGAAATTT	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
......TTTTGTTTTTGT-----TTGTTCGGC.....................................................................................................................................................................................................................	21	1	2.00	0.00	2.00	0.00	0.00
......TTTTTTTTTTGT-----CTTTCCG.......................................................................................................................................................................................................................	19	1	2.00	0.00	0.00	0.00	2.00
....GTTGTTGTTTTTGT-----TTTT..........................................................................................................................................................................................................................	18	4	0.25	0.00	0.25	0.00	0.00
.........TTTTTTTTT-----TTTTTGGGC.....................................................................................................................................................................................................................	18	3	0.33	0.00	0.00	0.00	0.33
....GTTGTTTTTTTTGT-----TGTT..........................................................................................................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
.......TTTTTTTTTGT-----TTTTTGGGT.....................................................................................................................................................................................................................	20	2	0.50	0.50	0.00	0.00	0.00
.TTGTTTTTTGTTTTTGT-----TTT...........................................................................................................................................................................................................................	20	15	0.07	0.00	0.07	0.00	0.00
....................................................................................................................................................................................................AGAGACAGCCACAGCAAC...............................	18	1	1.00	0.00	1.00	0.00	0.00
........TTTTTTTTGT-----TTTTTGGGCT....................................................................................................................................................................................................................	20	1	1.00	0.00	0.00	0.00	1.00
.................................................................................................................................................................C----TTTGG-------------------------AGAGACAGCCACAGC..................................	21	1	1.00	1.00	0.00	0.00	0.00
.....TTATTTTTTTTGT-----TATTT.........................................................................................................................................................................................................................	18	7	0.14	0.00	0.14	0.00	0.00
.....TTTTTTTTTTTGC-----TTTTTT........................................................................................................................................................................................................................	19	42	0.02	0.00	0.02	0.00	0.00
..................................GG-------------------------------------TCGATTGTCA--------------------------------------------------------------------GAGAGACA......................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
.....TTTTTGTTGTTGT-----TTTTTC........................................................................................................................................................................................................................	19	5	0.20	0.00	0.20	0.00	0.00
......TTTTTTTTTTGT-----TGTTTT........................................................................................................................................................................................................................	18	50	0.02	0.00	0.02	0.00	0.00
....ATTTTGTTTTTTGT-----TTTTTC........................................................................................................................................................................................................................	20	5	0.20	0.00	0.20	0.00	0.00
.....TTTTTTTTTTTGT-----CTTTCCG.......................................................................................................................................................................................................................	20	1	1.00	0.00	0.00	0.00	1.00
........................................................................................................................................................CGAGACAGAG----TTTGG-------------------------AGA..............................................	18	1	1.00	0.00	1.00	0.00	0.00
.TTGGTTTATGTTTTTGT-----T.............................................................................................................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
...........................................................................................................................................................GACAGAC----TTTGG-------------------------AGAGACAGCCACAGC..................................	27	1	1.00	0.00	0.00	0.00	1.00
....TTTGTTTTTTTTGT-----TTTT..........................................................................................................................................................................................................................	18	51	0.02	0.00	0.02	0.00	0.00
.....TTTTTTTTTTGGA-----TTTTTCGG......................................................................................................................................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
.......................................................................................................................................................................................................GACAGTGACAGCAACAAACT..........................	20	1	1.00	0.00	1.00	0.00	0.00
....GTTTTTTTTTTTGT-----TTCTT.........................................................................................................................................................................................................................	19	10	0.10	0.00	0.10	0.00	0.00

droVir3

GttGtt-------GGtGt-----tttttCG-------------------------GCACGACTTTGC----AAACGATTGTCATGAGTTGTCAGGCtGtgtGtgtGtGtGgGtGtGtGtGtGtGGGGGtGtGtGtGtGtGtCGGACAGTTGGAC----AGA----------------------------------------------------------------TAATGTAA----AGAAATTT	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.....................................................................................................GTGTGTGTGTGTGTGTGTGTGT..........................................................................................................................	22	13	3.69	3.08	0.31	0.31	0.00	0.00
.................................................................................................GTGTGTGTGTGTGTGTGTGTGT..............................................................................................................................	22	13	3.69	3.08	0.31	0.31	0.00	0.00
...................................................................................................GTGTGTGTGTGTGTGTGTGTGT............................................................................................................................	22	13	3.69	3.08	0.31	0.31	0.00	0.00
......................................................................................................TGTGTGTGTGTGTGTGTGTG...........................................................................................................................	20	18	1.28	0.83	0.39	0.06	0.00	0.00
..................................................................................................TGTGTGTGTGTGTGTGTGTG...............................................................................................................................	20	18	1.28	0.83	0.39	0.06	0.00	0.00
....................................................................................................TGTGTGTGTGTGTGTGTGTG.............................................................................................................................	20	18	1.28	0.83	0.39	0.06	0.00	0.00
........................................................................................................TGTGTGTGTGTGTGTGTGTG.........................................................................................................................	20	18	1.28	0.83	0.39	0.06	0.00	0.00
................................................................................................TGTGTGTGTGTGTGTGTGTG.................................................................................................................................	20	18	1.28	0.83	0.39	0.06	0.00	0.00
...................................................................................................GTGTGTGTGTGTGTGTGTGTG.............................................................................................................................	21	16	1.31	1.06	0.19	0.00	0.06	0.00
.....................................................................................................GTGTGTGTGTGTGTGTGTGTG...........................................................................................................................	21	16	1.31	1.06	0.19	0.00	0.06	0.00
.......................................................................................................GTGTGTGTGTGTGTGTGTGTG.........................................................................................................................	21	16	1.31	1.06	0.19	0.00	0.06	0.00
.................................................................................................GTGTGTGTGTGTGTGTGTGTG...............................................................................................................................	21	16	1.31	1.06	0.19	0.00	0.06	0.00
................................................................................................TGTGTGTGTGTGTGTGTG...................................................................................................................................	18	24	0.75	0.33	0.29	0.08	0.00	0.04
........................................................................................................TGTGTGTGTGTGTGTGTG...........................................................................................................................	18	24	0.75	0.33	0.29	0.08	0.00	0.04
..........................................................................................................TGTGTGTGTGTGTGTGTG.........................................................................................................................	18	24	0.75	0.33	0.29	0.08	0.00	0.04
......................................................................................................TGTGTGTGTGTGTGTGTG.............................................................................................................................	18	24	0.75	0.33	0.29	0.08	0.00	0.04
....................................................................................................TGTGTGTGTGTGTGTGTG...............................................................................................................................	18	24	0.75	0.33	0.29	0.08	0.00	0.04
..................................................................................................TGTGTGTGTGTGTGTGTG.................................................................................................................................	18	24	0.75	0.33	0.29	0.08	0.00	0.04
................................................................................................TGTGTGTGTGTGTGTGTGTGT................................................................................................................................	21	15	1.13	0.60	0.33	0.20	0.00	0.00
..................................................................................................TGTGTGTGTGTGTGTGTGTGT..............................................................................................................................	21	15	1.13	0.60	0.33	0.20	0.00	0.00
......................................................................................................TGTGTGTGTGTGTGTGTGTGT..........................................................................................................................	21	15	1.13	0.60	0.33	0.20	0.00	0.00
....................................................................................................TGTGTGTGTGTGTGTGTGTGT............................................................................................................................	21	15	1.13	0.60	0.33	0.20	0.00	0.00
......................................................................................................TGTGTGTGTGTGTGTGTGT............................................................................................................................	19	19	0.84	0.63	0.21	0.00	0.00	0.00
..................................................................................................TGTGTGTGTGTGTGTGTGT................................................................................................................................	19	19	0.84	0.63	0.21	0.00	0.00	0.00
....................................................................................................TGTGTGTGTGTGTGTGTGT..............................................................................................................................	19	19	0.84	0.63	0.21	0.00	0.00	0.00
........................................................................................................TGTGTGTGTGTGTGTGTGT..........................................................................................................................	19	19	0.84	0.63	0.21	0.00	0.00	0.00
................................................................................................TGTGTGTGTGTGTGTGTGT..................................................................................................................................	19	19	0.84	0.63	0.21	0.00	0.00	0.00
...................................................................................................GTGTGTGTGTGTGTGTGTGT..............................................................................................................................	20	17	0.71	0.53	0.00	0.18	0.00	0.00
.......................................................................................................GTGTGTGTGTGTGTGTGTGT..........................................................................................................................	20	17	0.71	0.53	0.00	0.18	0.00	0.00
.....................................................................................................GTGTGTGTGTGTGTGTGTGT............................................................................................................................	20	17	0.71	0.53	0.00	0.18	0.00	0.00
.................................................................................................GTGTGTGTGTGTGTGTGTGT................................................................................................................................	20	17	0.71	0.53	0.00	0.18	0.00	0.00
.......................................................................................................GTGTGTGTGTGTGTGTGT............................................................................................................................	18	23	0.43	0.26	0.09	0.09	0.00	0.00
.........................................................................................................GTGTGTGTGTGTGTGTGTG.........................................................................................................................	19	20	0.50	0.45	0.05	0.00	0.00	0.00
.................................................................................................GTGTGTGTGTGTGTGTGTG.................................................................................................................................	19	20	0.50	0.45	0.05	0.00	0.00	0.00
.................................................................................................GTGTGTGTGTGTGTGTGT..................................................................................................................................	18	23	0.43	0.26	0.09	0.09	0.00	0.00
...................................................................................................GTGTGTGTGTGTGTGTGT................................................................................................................................	18	23	0.43	0.26	0.09	0.09	0.00	0.00
.....................................................................................................GTGTGTGTGTGTGTGTGT..............................................................................................................................	18	23	0.43	0.26	0.09	0.09	0.00	0.00
.........................................................................................................GTGTGTGTGTGTGTGTGT..........................................................................................................................	18	23	0.43	0.26	0.09	0.09	0.00	0.00
.......................................................................................................GTGTGTGTGTGTGTGTGTG...........................................................................................................................	19	20	0.50	0.45	0.05	0.00	0.00	0.00
...................................................................................................GTGTGTGTGTGTGTGTGTG...............................................................................................................................	19	20	0.50	0.45	0.05	0.00	0.00	0.00
.....................................................................................................GTGTGTGTGTGTGTGTGTG.............................................................................................................................	19	20	0.50	0.45	0.05	0.00	0.00	0.00
......................................................................................................TGTGTGTGTGTGTGTGTGTGTGG........................................................................................................................	23	8	1.13	0.38	0.50	0.25	0.00	0.00
...............................................................................................ATGTGTGTGTGTGTGCGTGTG.................................................................................................................................	21	8	1.13	0.63	0.25	0.25	0.00	0.00
......................................................................................................TGTGTGTGTGTGTGTGTGTA...........................................................................................................................	20	22	0.36	0.23	0.09	0.00	0.05	0.00
....................................................................................................TGTGTGTGTGTGTGTGTGTA.............................................................................................................................	20	22	0.36	0.23	0.09	0.00	0.05	0.00
........................................................................................................TGTGTGTGTGTGTGTGTGTA.........................................................................................................................	20	22	0.36	0.23	0.09	0.00	0.05	0.00
................................................................................................TGTGTGTGTGTGTGTGTGTA.................................................................................................................................	20	22	0.36	0.23	0.09	0.00	0.05	0.00
..................................................................................................TGTGTGTGTGTGTGTGTGTA...............................................................................................................................	20	22	0.36	0.23	0.09	0.00	0.05	0.00
.................................................................................................TTGTGTGTGTGTGTGTGTGTG...............................................................................................................................	21	18	0.33	0.17	0.06	0.11	0.00	0.00
.................................................................................................TTGTGTGTGTGTGTGTGTGTGT..............................................................................................................................	22	15	0.40	0.40	0.00	0.00	0.00	0.00
.....................................................................................................TTGTGTGTGTGTGTGTGTGTG...........................................................................................................................	21	18	0.33	0.17	0.06	0.11	0.00	0.00
...............................................................................................TTGTGTGTGTGTGTGTGTGTG.................................................................................................................................	21	18	0.33	0.17	0.06	0.11	0.00	0.00
...................................................................................................TTGTGTGTGTGTGTGTGTGTGT............................................................................................................................	22	15	0.40	0.40	0.00	0.00	0.00	0.00
.......................................................................................................TTGTGTGTGTGTGTGTGTGTG.........................................................................................................................	21	18	0.33	0.17	0.06	0.11	0.00	0.00
.....................................................................................................TTGTGTGTGTGTGTGTGTGTGT..........................................................................................................................	22	15	0.40	0.40	0.00	0.00	0.00	0.00
...............................................................................................TTGTGTGTGTGTGTGTGTGTGT................................................................................................................................	22	15	0.40	0.40	0.00	0.00	0.00	0.00
...................................................................................................TTGTGTGTGTGTGTGTGTGTG.............................................................................................................................	21	18	0.33	0.17	0.06	0.11	0.00	0.00
................................................................................................TGTGTGTGTGTGTGTGTGTGTG...............................................................................................................................	22	14	0.36	0.14	0.07	0.14	0.00	0.00
....................................................................................................TGTGTGTGTGCATGTGTGTGTG...........................................................................................................................	22	6	0.83	0.17	0.00	0.67	0.00	0.00
......................................................................................................TGTGTGTGTGTGTGTGTGTGTG.........................................................................................................................	22	14	0.36	0.14	0.07	0.14	0.00	0.00
................................................................................................TGTGTGTGTGTGTGTGTGTGTGT..............................................................................................................................	23	11	0.45	0.00	0.18	0.27	0.00	0.00
..................................................................................................TGTGTGTGTGTGTGTGTGTGTG.............................................................................................................................	22	14	0.36	0.14	0.07	0.14	0.00	0.00
....................................................................................................TGTGTGTGTGTGTGTGTGTGTG...........................................................................................................................	22	14	0.36	0.14	0.07	0.14	0.00	0.00
....................................................................................................TGTGTGTGTGTGTGTGTGTGTGT..........................................................................................................................	23	11	0.45	0.00	0.18	0.27	0.00	0.00
..................................................................................................TGTGTGTGTGTGTGTGTGTGTGT............................................................................................................................	23	11	0.45	0.00	0.18	0.27	0.00	0.00
..................................................................................................TGTGTGTGTGTGTGTGTGTGC..............................................................................................................................	21	20	0.20	0.10	0.00	0.10	0.00	0.00
..........................................................................................................TGTGTGTGTGTGAGTGTG.........................................................................................................................	18	30	0.13	0.03	0.07	0.03	0.00	0.00
....................................................................................................TGTGTGTGTGTGAGTGTG...............................................................................................................................	18	30	0.13	0.03	0.07	0.03	0.00	0.00
..........................................................................................................................TGTGTGTGTGTGTGTGTGTC.......................................................................................................	20	21	0.19	0.19	0.00	0.00	0.00	0.00
................................................................................................TGTGTGTGTGTGTGTGTGTTT................................................................................................................................	21	17	0.24	0.06	0.00	0.12	0.00	0.06
..................................................................................................TGTGTGTGTGTGTGTGTGTTT..............................................................................................................................	21	17	0.24	0.06	0.00	0.12	0.00	0.06
..................................................................................................................TGTGTGTGTGTGAGTGTG.................................................................................................................	18	30	0.13	0.03	0.07	0.03	0.00	0.00
......................................................................................................TGTGTGTGTGTGAGTGTG.............................................................................................................................	18	30	0.13	0.03	0.07	0.03	0.00	0.00
....................................................................................................TGTGTGTGTGTGTGTGTGTGC............................................................................................................................	21	20	0.20	0.10	0.00	0.10	0.00	0.00
.................................................................................................GTGTGTGTGTGTGTGTGTGTGTG.............................................................................................................................	23	12	0.33	0.25	0.00	0.08	0.00	0.00
........................................................................................................TGTGTGTGTGTGTGTGTGTGC........................................................................................................................	21	20	0.20	0.10	0.00	0.10	0.00	0.00
......................................................................................................TGTGTGTGTGTGTGTGTGTTT..........................................................................................................................	21	17	0.24	0.06	0.00	0.12	0.00	0.06
........................................................................................................TGTGTGTGTGTGAGTGTG...........................................................................................................................	18	30	0.13	0.03	0.07	0.03	0.00	0.00
...................................................................................................GTGTGTGTGTGTGTGTGTGTGTGT..........................................................................................................................	24	9	0.44	0.22	0.00	0.22	0.00	0.00
......................................................................................................TGTGTGTGTGTGTGTGTGTGC..........................................................................................................................	21	20	0.20	0.10	0.00	0.10	0.00	0.00
.....................................................................................................GTGTGTGTGTGTGTGTGTGTGTG.........................................................................................................................	23	12	0.33	0.25	0.00	0.08	0.00	0.00
................................................................................................TGTGTGTGTGTGTGTGTGTC.................................................................................................................................	20	21	0.19	0.19	0.00	0.00	0.00	0.00
..................................................................................................TGTGTGTGTGTGTGTGTGTC...............................................................................................................................	20	21	0.19	0.19	0.00	0.00	0.00	0.00
.................................................................................................GTGTGTGTGTGTGTGTGTGTGTGT............................................................................................................................	24	9	0.44	0.22	0.00	0.22	0.00	0.00
...................................................................................................GTGTGTGTGTGTGTGTGTGTGTG...........................................................................................................................	23	12	0.33	0.25	0.00	0.08	0.00	0.00
......................................................................................................TGTGTGTGTGTGTGTGTGTC...........................................................................................................................	20	21	0.19	0.19	0.00	0.00	0.00	0.00
....................................................................................................TGTGTGTGTGTGTGTGTGTTT............................................................................................................................	21	17	0.24	0.06	0.00	0.12	0.00	0.06
................................................................................................................TGTGTGTGTGTGAGTGTG...................................................................................................................	18	30	0.13	0.03	0.07	0.03	0.00	0.00
....................................................................................................TGTGTGTGTGTGTGTGTGTC.............................................................................................................................	20	21	0.19	0.19	0.00	0.00	0.00	0.00
........................................................................................................TGTGTGTGTGTGTGTGTGTC.........................................................................................................................	20	21	0.19	0.19	0.00	0.00	0.00	0.00
................................................................................................TGTGTGTGTGTGAGTGTG...................................................................................................................................	18	30	0.13	0.03	0.07	0.03	0.00	0.00
..................................................................................................TGTGTGTGTGTGAGTGTG.................................................................................................................................	18	30	0.13	0.03	0.07	0.03	0.00	0.00
................................................................................................TGTGTGTGTGTGTGTGTGTGC................................................................................................................................	21	20	0.20	0.10	0.00	0.10	0.00	0.00
.........................................................................................................GTGTGTGCGTGTGTGTGT..........................................................................................................................	18	26	0.12	0.00	0.00	0.12	0.00	0.00
.................................................................................................GTGTGTGTGTGTGTGTGTGTGTGTG...........................................................................................................................	25	9	0.33	0.33	0.00	0.00	0.00	0.00
................................................................................................TGTGTGTGTGTGTGTGTGTTTGT..............................................................................................................................	23	13	0.23	0.00	0.00	0.23	0.00	0.00
.................................................................................................GTGTGTGCGTGTGTGTGT..................................................................................................................................	18	26	0.12	0.00	0.00	0.12	0.00	0.00
...................................................................................................GTGTGTGTGTGTGTGTGTGTGTGTG.........................................................................................................................	25	9	0.33	0.33	0.00	0.00	0.00	0.00
.......................................................................................................GTTTGTGTGTGTGTGTGTGT..........................................................................................................................	20	18	0.17	0.00	0.06	0.11	0.00	0.00
....................................................................................................TGTGTGTGTGTGTGTGTT...............................................................................................................................	18	29	0.10	0.03	0.07	0.00	0.00	0.00

droMoj3

tGtGtttGtGtGTAAAGAGTAGAACTGCGGGA----GGGAGTGTGGAAGAAAACGGCACGACTTTGC-GACAGACGATTGTCAGG----------CAG------------------------------------------------------------------------------AGTGGCAGAGTGACAGAGACAGCGACAGACGGCGAGACAGTTGGACAGATAATGTA-----AGAAATTT	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
...........................................................................................................................................................................................GACAGACACAGCGATAGA........................................	18	1	1.00	0.00	0.00	1.00	0.00
.......................................................................................................................................................................................GAGGGACAGAGGCAGCGA............................................	18	1	1.00	0.00	1.00	0.00	0.00
..........................GCGGGA----GGGAGTGTGGAAG....................................................................................................................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00
...........................................................................................................................................................................................GACAGAGAGAGCGACAGA........................................	18	1	1.00	0.00	0.00	1.00	0.00
................................................................................................AG------------------------------------------------------------------------------AGTGACAGAGTGACAGAGTCA................................................	23	1	1.00	0.00	0.00	0.00	1.00
...................................................................................GA----------CAG------------------------------------------------------------------------------AGTGACAGAGTGACAGA....................................................	22	1	1.00	1.00	0.00	0.00	0.00

droGri2

tttgtG-------tttGt-----tttttCG-------------------------GCACGACTTTTGCGACTGACGATTGTCATGAGTTGTg--------------------tG----------------------------GgtGGgtttgtG----tgtGtg------------------------------tGtgtGGgGttgtGtgtGtgtGtgGGGgtGtTAATGTAAAGAAAGAAATTT	Size	Hit Count	Total Norm	V109 Male body
..........................................................................................TG--------------------TG----------------------------TGTGTGTTTGTG----TGT....................................................................................	19	41	0.07	0.07
..................................................................................................................................................................TG------------------------------TGTGTGTGTTTGTGTGT..................................	19	41	0.07	0.07
....................................................................................................................................................TGTGTG----TGTGTG------------------------------TGTGTTG............................................	19	37	0.05	0.05
............................................................................................................................................................................................................TGTGTGTGTGTGTGCGTGTG.....................	20	40	0.05	0.05
......................................................................................................................................................TGTG----TGTGTG------------------------------TGTGTGTTG..........................................	19	37	0.05	0.05
..................................................................................................................................................AGTGTGTG----TGTGTG------------------------------TGTGT..............................................	19	50	0.04	0.04
.............................................................................................................................................................................................................GTGTGTGTGTGTGCGTGTG.....................	19	47	0.04	0.04
...................................................................................................................................................GTGTGTG----TGTGTG------------------------------CGTGTG.............................................	19	47	0.04	0.04
...............................................................................................................................................ATGTGTTTGTG----TGTGTG------------------------------TG.................................................	19	27	0.04	0.04
......................................................................................................................................................TGTG----TGTGTG------------------------------TGTGTGTG...........................................	18	50	0.02	0.02
...................................................................................................................................................GTTTGTG----AGTGAG------------------------------TGTGTG.............................................	19	1	1.00	1.00
...................................................................................................................................................GAATGTG----TGTGTG------------------------------TGTGT..............................................	18	27	0.04	0.04
......................................................................................................................................................TGTG----TGTATG------------------------------TGTGTGTGGT.........................................	20	3	0.33	0.33
..........................................................................................................................................................................................................GTTGTGTGTGTGTGCGTG.........................	18	8	0.13	0.13
............................................................................................................................................................................................................TGTGTGTGTGGGTGGGTGTGT....................	21	27	0.04	0.04
....................................................................................................................................................TATGTG----TGTGTG------------------------------TGTGTGTG...........................................	20	44	0.02	0.02
...................................................................................................................................................GTATGTG----TGTGTG------------------------------TGTGTGGG...........................................	21	24	0.04	0.04
................................................................................................................................................TGTGATTGTG----TGTGTG------------------------------TGTGT..............................................	21	20	0.05	0.05
....................................................................................................................................................GTTGTG----TGTGTG------------------------------TGCGTG.............................................	18	8	0.13	0.13
...........................................................................................G--------------------TG----------------------------CGTGTGTTTGTG----TGTGTG------------------------------TG.................................................	23	15	0.07	0.07
......................................................................................................................................................CGTG----TGTGTG------------------------------TGTGTGAG...........................................	18	30	0.03	0.03
..................................................................................................................................................................TG------------------------------TGTGTGTGCTTGTGTGTGTGTG.............................	24	15	0.07	0.07
..........................................................................................TG--------------------TG----------------------------GGTGGGTGGGTG----TG.....................................................................................	18	17	0.06	0.06
..............................................................................................................................................................TGTGTG------------------------------TGTxTGCGGTTGT......................................	18	1	1.00	1.00
...................................................................................................................................................GTATGTG----TGTGTG------------------------------TGTGTG.............................................	19	49	0.02	0.02
.....................................................................................................................................................TTGTG----TGTGTG------------------------------TGCGTGCG...........................................	19	6	0.17	0.17
.............................................................................................................................................................................................................GTGTGTGTGTGTGAGGGT......................	18	34	0.03	0.03
.............................................................................................................................................................................................................GTGTGTGTGTGTGTGGGTCT....................	20	24	0.04	0.04
................................................................................................................................................................TGTG------------------------------TGTGTGGTGTGGTGT....................................	19	2	0.50	0.50
....................................................................................................................................................TTTGTG----TGTGTG------------------------------TGTGTGTT...........................................	20	31	0.03	0.03
...................................................................................................................................................GTGTGTG----TGTGTG------------------------------TGTGTTG............................................	20	31	0.03	0.03
...................................................................................................................................................TTTTGTG----TGCGTG------------------------------TGTGTG.............................................	19	4	0.25	0.25
...................................................................................................................................................GTTTGTG----TGTGTG------------------------------TTTGTGTG...........................................	21	21	0.05	0.05
.........................................................................................................................................................G----TGTGTG------------------------------TGTGTGAGGGT........................................	18	34	0.03	0.03
.......................................................................................................................................................GTG----TGTGTG------------------------------TGTGTGAGTT.........................................	19	25	0.04	0.04
................................................................................................................................................TGTGTATGTG----TGTGTG------------------------------TGTGT..............................................	21	33	0.03	0.03
...............................................................................................................................................................GTGTG------------------------------TGTGTGTGTTTGTGTGTG.................................	23	25	0.04	0.04
.......................................................................................................................................................GTG----TGTGTG------------------------------TGTGTGGGTCT........................................	20	24	0.04	0.04
...................................................................................................................................................GTGTGTG----TGTGTG------------------------------TGTGT..............................................	18	46	0.02	0.02
...............................................................................................................................................GTGTGTCTGTG----TGTGTG------------------------------TGT................................................	20	36	0.03	0.03
....................................................................................................................................................TATGTG----TGTGTG------------------------------TGTGTGT............................................	19	47	0.02	0.02
...................................................................................................................................................................G------------------------------TGTGTGTGGATGTGTGT..................................	18	26	0.04	0.04
...................................................................................................................................................GTGTGTG----TGTGTG------------------------------TGTGTGA............................................	20	45	0.02	0.02
.....................................................................................................................................................TTTTG----TGTGTG------------------------------TATGTGGG...........................................	19	2	0.50	0.50
......................................................................................................................................................TGTG----TGTGTG------------------------------TGTGTGCGTTT........................................	21	19	0.05	0.05
...............................................................................................................................................................GTGTG------------------------------TGTGTGTGTTTGTG.....................................	19	46	0.02	0.02
....................................................................................................................................................TGTGTG----TGTGTG------------------------------TGTGTG.............................................	18	50	0.02	0.02
.......................................................................................................................................................GTG----TGTGTG------------------------------TGTGAGGGT..........................................	18	34	0.03	0.03
...................................................................................................................................................GTGTGTG----TGTGCG------------------------------TGTGTG.............................................	19	45	0.02	0.02
.................................................................................................................................................GTGTCTGTG----TGTGTG------------------------------TGTGT..............................................	20	37	0.03	0.03
...................................................................................................................................................GTGTGTG----TGTGTG------------------------------TGTGTG.............................................	19	41	0.02	0.02
...................................................................................................................................................GTGTGTG----TGTGTG------------------------------TTTGTG.............................................	19	46	0.02	0.02
................................................................................................................................................TGTGTTTGTT----TGTGTG------------------------------TG.................................................	18	26	0.04	0.04

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image							None
UNAFold Image							None

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image															None
UNAFold Image															None