Possible Orthologs for sblock221622

droSim1 - 4 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	chr3R:18910498-18910623 +	97.63	GGACAGTTGAGCGCCATCACCGGCAGCCGCGGCGGCAGCGGCAGCAGCACTGGCGAGCAGCAGATTATTGACGTCGCTGCTGCTGCCGTTGCCACCGAAGCTGGCTGATGGGTTAGCCGCTGAGGT GGACAGTTGAGCGCCATCACCGGCAGCCGCGGCGGCAGCGGCAGCAGCACTGGCGAGCAGCAGATTATTGACGTCGCTGCTGCTGCCGTTGCCACCGAAGCTGGCGGATGGGTTAGCCGCTGAGGT Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo ..........................................................................................CCGAxxGAAGCTGGCGGATGG............... 19 2 0.50 0.00 0.50 0.00 0.00 ..........................................................................................GTCACCGAAGCTxGCGGAT................. 18 2 0.50 0.00 0.00 0.50 0.00 ....................................................................TGACGTCGTTGCTGCTGA........................................ 18 4 0.25 0.00 0.25 0.00 0.00 ..........................................................................................CCGAxxGAAGCTGGCGGATG................ 18 2 0.50 0.00 0.50 0.00 0.00 ..........................................................................................GTCATCGAAGCTGGCGGATG................ 20 2 0.50 0.00 0.00 0.50 0.00
3	chr3R:18910487-18910612 -	57.76	GGACAGTTGAGCGCCATCACCGGCAGCCGCGGCGGCAGCGGCAGCAGCACTGGCGAGCAGCAGATTATTGA-CGTCGCTGCTGCTGCCGTTGCCACCGAAGCTG--GCTGATGG---------GTTAGCCGCTGAGGT TAAC---------CCAT--CCGCCAGCTTCGGTGGCAACGGCAGCAGCAGCGACGT-CAATAATCTGCTGCTCGCCAGTGCTGCTGCCGCTGCCGCCGCGGCTGCCGGTGATGGCGCTCAACTGTCCGCCAATGCGGC Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo .............................................................AATCTGCTGxTCGCCGGTGCT........................................................ 20 2 2.00 0.50 1.00 0.00 0.50 ...............................................................TCTGCTGxTCGCCGGTGCT........................................................ 18 2 1.00 0.00 0.50 0.00 0.50 ..............................................................ATCTGCTGxTCGCCGGTGCT........................................................ 19 2 0.50 0.00 0.00 0.00 0.50 ......................................................................................CCGCTGCCGCCGCCGGTG.................................. 18 10 0.10 0.00 0.00 0.00 0.10
7	chrX:6056528-6056660 -	47.64	GGACAGTTGAGCGCCATCACCGGCAGCCGCGGCGGCAGCGGCAGCAG----CACTGGCGAGCAGCAGATTATTGACGTCGCTGCTGCTGCCGTTGCCACCGAAGCTGGCTGATGGGTTAGCCGCTG-----------------------------AGGT ------------------ACCGGCTGCCGCAGTTGCAGCTGCAGTCGTTACCGCTGGTGTGCTGCTGC----TGGTGTTGCTGCTGCTACTACTGCTGCTGCTGCTGG----TGCTTTCTCCACTGACGATAGAAGAAGTTGCTGGTGGAGGAGGCGGT Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo .................................................................TTC----TGGTCTTGCTGCTGC........................................................................ 18 19 0.11 0.00 0.00 0.00 0.11 ..............................AGTTGCAGxTGCAGTCGTC.............................................................................................................. 18 1 2.00 0.00 2.00 0.00 0.00 .............................................................................................TGCTGGTGCTGCTAG----TGCT........................................... 19 37 0.03 0.00 0.00 0.03 0.00 .................................................................TGC----TGGTTTTGCTxCTGCTA...................................................................... 19 1 1.00 0.00 1.00 0.00 0.00 ........................TGCCGCTGTTGGAGCTGC..................................................................................................................... 18 12 0.08 0.00 0.00 0.00 0.08 ..........................................................GTGATGATGC----TGGTGTTGCTG............................................................................ 21 6 0.17 0.00 0.00 0.17 0.00 .......................................................................................................................................GAAGTTGCCGGTGGAGGAGC.... 20 1 1.00 0.00 0.00 1.00 0.00 ..................................GCTGCTGCAGTCGGTACC........................................................................................................... 18 1 1.00 0.00 0.00 1.00 0.00 .............................................................................................................................................GTTGGTGGAGGTGGCGGT 18 1 1.00 1.00 0.00 0.00 0.00
5	chrX:5754363-5754496 -	43.62	GGACAGTTGAGCGCCATCAC-----CGGCAGCCGCGGCGGCAGCGGCAGCAGC----ACTGGCGAGCAGCAGATTATTGACGTCGCTGCTGCTG-------CCGTTGCCACCGAAGCTGG----CTGATGGGTTAGCCGCTGAGGT ACTTGGTTG----CTGTTGCAGCTATTGCTGCTGCTGCTGTTGTGGCAACTACTGTTATTGCTGCTCGGCAATG------TGTTGCTGCTGCTGGCGGGGATTGTTGCTGTCGGTGTGGGATTGCCATT--GCTGGTGGCCATGGC Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo ...................................................................................TGCTGCTGCTGTCGGGGC............................................. 18 15 0.07 0.00 0.00 0.00 0.07 ..TTGGATG----TTGTTGCAGCT.......................................................................................................................... 18 3 0.33 0.00 0.00 0.00 0.33 ...................................................................GGCAATG------TGTTGGAGCTG....................................................... 18 1 1.00 0.00 1.00 0.00 0.00 .............................TGCTGCTGCTGTCGGGGC................................................................................................... 18 15 0.07 0.00 0.00 0.00 0.07 .............................................GCTACTAGTGTTATTGCTG.................................................................................. 19 1 1.00 0.00 0.00 1.00 0.00

droSec1 - 5 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	super_0:19459752-19459877 +	96.07	GGACAGTTGAGCGCCATCACCGGCAGCCGCGGCGGCAGCGGCAGCAGCACTGGCGAGCAGCAGATTATTGACGTCGCTGCTGCTGCCGTTGCCACCGAAGCTGGCTGATGGGTTAGCCGCTGAGGT GGACAGTTGAGAGCCATCACCGGCAGCCGCGGCGGCAGCGGCAGCAGCACTGGCGAGCAGCAGATTATTGACGTCGCTGCTGCTGCCGTTGCCACCGAAGCTGGCGGATGGGTTAGCCGTTGAGGT Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head ..........................................................................CGCTGCTGCTGCCGCCGCC................................. 19 36 0.03 0.00 0.03 0.00 .............................................................................................ATCGAAGCTGGCGGATGGTT............. 20 2 0.50 0.50 0.00 0.00 .....................GGCAGCGGCGGCAGCAGCG...................................................................................... 19 31 0.03 0.00 0.03 0.00 ................................CGGCAGCGGCAGCAGGAC............................................................................ 18 10 0.10 0.10 0.00 0.00 ............................................................................CTGCTGCTGCCGCCGCCA................................ 18 31 0.03 0.00 0.03 0.00 ..........................................................................CGATGCCGCTGCCGTTGC.................................. 18 4 0.25 0.00 0.25 0.00 .....................................................................GACGTCGCTGTGGCTGCC....................................... 18 2 0.50 0.50 0.00 0.00 ..........................CAGCGGCGGCAGCGACAGCAG............................................................................... 21 13 0.08 0.00 0.00 0.08 ......TTGGGAGCGATCACCGGC...................................................................................................... 18 2 0.50 0.00 0.50 0.00 ..........................CTGCGGCGGCAACGGCAGCA................................................................................ 20 8 0.13 0.13 0.00 0.00 .........................................CAGCAGCAACGGCGAGCAGC................................................................. 20 2 0.50 0.50 0.00 0.00
6	super_23:306582-306706 -	60.7	GGACAGTTGAGCGCCATCACCGGCAGCCGCGGCGGCAGCGGCAGC---AGCACTGGCG--AGCAGCAGATTA-TTGACGTCGCTGCTGCTGCCGTTG--CCACCGAAGCTGGCTGATGGGTTAGCCGCTGAGGT AG-CA-----GCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCAGCAGCAGCGGCAAAAGCAGCAGGGCAGTTGCAGTTGCTACTGCTACTGCTGATCTGCTGATGTTGATTTAT---TTAGCCGGTTCGCT Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head ...........................AGCAGCAGCAGCGGCAGCGGCA..................................................................................... 22 26 0.08 0.00 0.08 0.00 .....................AGCAGCAGCAGCGGCAGCGGCA........................................................................................... 22 26 0.08 0.00 0.08 0.00 ......................GCAGCAGTAGCGGCAGCGGCAGC......................................................................................... 23 36 0.03 0.00 0.03 0.00 ............................GCAGCAGTAGCGGCAGCGGCAGC................................................................................... 23 36 0.03 0.00 0.03 0.00 ..................................CCAGCGGCAGCAGCAGCAG................................................................................. 19 31 0.03 0.00 0.03 0.00 ...............................GCAGCCGCGGCAGCAGGAGCAGC................................................................................ 23 16 0.06 0.00 0.06 0.00 .............................CATCAGCAGCGGCAGCAG....................................................................................... 18 37 0.03 0.00 0.03 0.00 ................................CACCAGCGGCAGTAGCAGCAGC................................................................................ 22 34 0.03 0.00 0.03 0.00 ........................AGCAGCAGAAGCAGAGGCAGCAG....................................................................................... 23 14 0.07 0.07 0.00 0.00 .......................CAGCAGCAGCAGCATCGGCATCA........................................................................................ 23 33 0.03 0.00 0.03 0.00 .....................................GCGGCGGCGGCAGCAGCGGC............................................................................. 20 28 0.04 0.00 0.04 0.00 .........................GCAGCAGCGGCAGCGGCAGC......................................................................................... 20 41 0.02 0.00 0.02 0.00 ..................................GCAGCGGCAGCGGCAGCATCGG.............................................................................. 22 6 0.17 0.00 0.17 0.00 ..............................AGCAGCAGTGGAAGCAGC...................................................................................... 18 51 0.02 0.00 0.02 0.00 ........................AGCAGCAGCAGCAGAGTCAGCAGCA..................................................................................... 25 13 0.08 0.00 0.00 0.08 .............................CAGCACCAGTGGCAGCAGCAG.................................................................................... 21 34 0.03 0.00 0.00 0.03 ..................................CCAGCGGxAGCAGCAGCAGCGGCA............................................................................ 23 2 0.50 0.50 0.00 0.00 ...................GCAGCAGGAGCAGCAGCAGCGGA............................................................................................ 23 13 0.08 0.08 0.00 0.00 ..............................TGCAGCAGCGGCAGCAGCAGCC.................................................................................. 22 48 0.02 0.00 0.00 0.02 ...................................CAGCGGCAGCAGTGGCAGCGGC............................................................................. 22 7 0.14 0.00 0.14 0.00 ........................AGTAGCAGCAGCAGCGGGAGC......................................................................................... 21 45 0.02 0.02 0.00 0.00 ..............................ATCAGCAGCGGCAGCAGCAGC................................................................................... 21 22 0.05 0.00 0.05 0.00 .........................................................................TTGAAGTTGCTGCTGCTA........................................... 18 17 0.06 0.00 0.06 0.00 .....................AGCAGCGGTAGCAGCAGCGG............................................................................................. 20 42 0.02 0.00 0.02 0.00 ..............................AGCAGCTTCGGCAGCAGCAGC................................................................................... 21 23 0.04 0.04 0.00 0.00 ............................GCAGCAGCAGCGGCAGAAGCA..................................................................................... 21 392 0.00 0.00 0.00 0.00 .....................AGGAGCAGCACCAGCAGCG.............................................................................................. 19 38 0.03 0.00 0.03 0.00 ........................AGCAGCAGTAGCAGCGGTAGCA........................................................................................ 22 37 0.03 0.00 0.03 0.00 ............................GCAGCAGCAGCGGGAGCA........................................................................................ 18 31 0.03 0.00 0.03 0.00 ................................CAGCAGAGCCAGCAGCAGC................................................................................... 19 32 0.03 0.00 0.00 0.03 ............................GCAGCAGCAGCGGCAGCGGCA..................................................................................... 21 36 0.03 0.00 0.03 0.00 ......................GCAGCAGCAGCAGCAGTGGCAGC......................................................................................... 23 23 0.04 0.04 0.00 0.00 ..........................AAGCAGCAGCAGCGGTAGCA........................................................................................ 20 38 0.03 0.03 0.00 0.00 ............................GCATCAGCAGGGGCAGCAGC...................................................................................... 20 45 0.02 0.00 0.02 0.00 ......................GCAGCAGCAGCGGCAGCGGCA........................................................................................... 21 36 0.03 0.00 0.03 0.00 .......................CAGCAGCAGAAGCAGAGGCAG.......................................................................................... 21 21 0.05 0.00 0.05 0.00 .................................AGCAGAGGCAGCAGCAGAAG................................................................................. 20 19 0.05 0.00 0.00 0.05 .....................AGCATAAGCAGCAGCAGCG.............................................................................................. 19 42 0.02 0.00 0.02 0.00 .................................AGCAGAGGCAGCAGCAGCAG................................................................................. 20 16 0.06 0.00 0.06 0.00 ................................CAGCAGCGGCAGCAGCAGC................................................................................... 19 475 0.00 0.00 0.00 0.00 ...............................GCAGCAGCGGCAGCGGCAGC................................................................................... 20 41 0.02 0.00 0.02 0.00 .........................................CAGCAGCTGCAGCGGGAAA.......................................................................... 19 5 0.20 0.00 0.20 0.00 .....................AGCAGCACCTGCAGCAGCGGC............................................................................................ 21 41 0.02 0.00 0.02 0.00 ....................................AGCGGCAGCAGCAGTAGC................................................................................ 18 33 0.03 0.00 0.03 0.00 ...........................AGCAGCAGCAGTGGGAGCA........................................................................................ 19 51 0.02 0.02 0.00 0.00 ...............................................CACCAGCGGCAAAAGTAGC.................................................................... 19 2 0.50 0.00 0.50 0.00 .................................AGCAGCGGTAGCAGCAGCGG................................................................................. 20 42 0.02 0.00 0.02 0.00 ............................GCAGCAGCAGCGGGAGTAGCAGCA.................................................................................. 24 22 0.05 0.00 0.05 0.00 .....................AGCAGCAGTAGCCGCAGCGG............................................................................................. 20 33 0.03 0.00 0.03 0.00
3	super_0:19459741-19459866 -	57.76	GGACAGTTGAGCGCCATCACCGGCAGCCGCGGCGGCAGCGGCAGCAGCACTGGCGAGCAGCAGATTATTGA-CGTCGCTGCTGCTGCCGTTGCCACCGAAGCTG--GCTGATGG---------GTTAGCCGCTGAGGT TAAC---------CCAT--CCGCCAGCTTCGGTGGCAACGGCAGCAGCAGCGACGT-CAATAATCTGCTGCTCGCCAGTGCTGCTGCCGCTGCCGCCGCGGCTGCCGGTGATGGCTCTCAACTGTCCGCCAATGCGGC Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head ............................TCGGTGGCAACGGCAGCAGCA......................................................................................... 21 2 4.00 0.00 0.50 3.50 ............................TCGGTGGCAACGGCAGCAGCAG........................................................................................ 22 2 1.50 0.00 0.00 1.50 ................................................................................CTGCTGTCGCTGCCGCCGCTG..................................... 21 13 0.15 0.00 0.00 0.15 .............................CGGTGGCAACGGCAGCAGCA......................................................................................... 20 6 0.33 0.17 0.00 0.17 ................................TGGCAACGGCAGCAGCAGCGACG................................................................................... 23 2 1.00 0.00 0.00 1.00 ...................................................................................CTGTCGCTGCCGCCGCTGCTG.................................. 21 12 0.17 0.00 0.00 0.17 ..............................................................................TCCTGCTGCCGCxGCCGCC......................................... 18 4 0.25 0.00 0.25 0.00 ........................................GCAGCAGCAGCGxCGT-CGA.............................................................................. 18 6 0.17 0.00 0.17 0.00 ..........................CTGCGGCGGCAACGGCAGCA............................................................................................ 20 8 0.13 0.13 0.00 0.00 ...........................................GCAGCAGCGACGT-AAACA............................................................................ 18 3 0.33 0.00 0.33 0.00 ..........................................................................CCAGTGCTGCTGCCGCTGCCG........................................... 21 2 0.50 0.00 0.00 0.50 .................................GGCAACGGCAGCAACAGCAA..................................................................................... 20 26 0.04 0.00 0.00 0.04 .............................................................................GTGCTGCCCCCGCTGCCGCCG........................................ 21 2 0.50 0.00 0.50 0.00 ................................TGGCAACGGCAGCAGCAGCGA..................................................................................... 21 2 0.50 0.00 0.00 0.50 ............................TCGGTGGCAACGGCAGCAGCAGC....................................................................................... 23 2 0.50 0.00 0.00 0.50 .................................GACAACGGGAGCAGCAGC....................................................................................... 18 4 0.25 0.00 0.00 0.25 ..........................................................................CCAGTGCTGCTGCCGCTGCCGCC......................................... 23 2 0.50 0.00 0.00 0.50 ................................TGGCAGCGGCAGCAGCAGCGACG................................................................................... 23 2 0.50 0.00 0.00 0.50 .................................GGCAGCGGCGGCAGCAGCG...................................................................................... 19 31 0.03 0.00 0.03 0.00 ............................TTGGTGGCAACGGCAGCAGCAG........................................................................................ 22 4 0.25 0.00 0.00 0.25 ............................TCGGTGGCAACGGCAGCAGCATT....................................................................................... 23 2 0.50 0.00 0.00 0.50 ...............................................................................GCCGCCGCCGCTGCCGCCG........................................ 19 14 0.07 0.00 0.07 0.00 ............................TCGGTGGCAACGGCAGCAGC.......................................................................................... 20 2 0.50 0.00 0.00 0.50 ..............................GGTGGCAACGGCAGCAGCAGT....................................................................................... 21 3 0.33 0.00 0.00 0.33
5	super_21:222123-222239 -	50.13	GGACAGTTGAGCGCCATCACCGGCAGCCGCGGCGGCAGCGGCAGCAGCACTGGCGA--GCAGCAG-ATTATTGACGTCGCTGCTGCTGCCGTTGCCACCGAAGCTGGCTGATGGGTTAGCCGCTGAGGT GGACAGCTGAGCTGTACCAGCGGCGGACCGGGCGGCAGTGCCAGTTCCGGTAGCGGAGGCAATGGAGCCATTGGTCCCGCCTCCA-------TGGCGCCAAATTCGGT-----GGCCGGCGATGGCAGT Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head ..............................................................................................................................AGT 22 18 0.06 0.00 0.06 0.00 ...............................................................................................................................GT 20 37 0.03 0.00 0.03 0.00 ...........................................................................................................................CGCAGT 23 28 0.04 0.00 0.04 0.00 ..............................................................................................................................AGT 21 45 0.02 0.02 0.00 0.00 .........................................................................................................GGT-----GGCCGGCGGTGTCAG. 18 1 1.00 0.00 0.00 1.00
2	super_35:192213-192349 +	40.66	GGACAGTTG-AGCGCCATCAC------------------------------------------------------------------CGGCAGCCGCGGCGGCAGCGGCAGCAGCACTGGCGAGCAGCAGATTATTGACGTCGCTGCTGCTGCCGTTGCCACCGAAGCTGGCTGATGGGTTAGCCGCTGAGGT CGACACCTTCAG-CTTGTCGTAGGCGCTGGCATATGGGCCGTGGGCGTGGCTGTGGGCGTGGCCGTGGGCATGACCATGGTGATAGTGAGCGGCAGCTGCGGCAGCCGCATTATGA--------TGGTAGATC-------------------------GCGCCGAAGTTGC---------------------- Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head ....................................................GTGGGCGAGACCGTGGGC........................................................................................................................... 18 1 4.00 0.00 4.00 0.00 .................................................GCTGGAGGCGTGGCCGTGGGC........................................................................................................................... 21 1 2.00 2.00 0.00 0.00 ...........................................GGCGTGGCCGTGGGCGTGGGC................................................................................................................................. 21 1 1.00 0.00 0.00 1.00 ....................................................GTGGGCGTGGACGTGGGC........................................................................................................................... 18 3 0.33 0.00 0.33 0.00 ....................................................GTGGGCGTGGCTGTGGTCA.......................................................................................................................... 19 3 0.33 0.00 0.33 0.00 .....................................GCGGTGGGCGTGGCGGTGGG........................................................................................................................................ 20 3 0.33 0.33 0.00 0.00 ....................................................GTGGGCGTGGCCGGTGGC........................................................................................................................... 18 2 0.50 0.00 0.50 0.00 ........................................GTTGGCGTGGGTGTGGGC....................................................................................................................................... 18 2 0.50 0.00 0.50 0.00 .................................................GCGGTGGGCGTGGCGGTGGG............................................................................................................................ 20 3 0.33 0.33 0.00 0.00 ........................................GTGGGCGTGGACGTGGGC....................................................................................................................................... 18 3 0.33 0.00 0.33 0.00 ........................................GTGGGCGTGGCTGTGGTCA...................................................................................................................................... 19 3 0.33 0.00 0.33 0.00

droYak2 - 9 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	chr3R:19969866-19969991 +	92.95	GGACAGTTGAGCGCCATCACCGGCAGCCGCGGCGGCAGCGGCAGCAGCACTGGCGAGCAGCAGATTATTGACGTCGCTGCTGCTGCCGTTGCCACCGAAGCTGGCTGATGGGTTAGCCGCTGAGGT GGACAATTGAACGCCATCACCGGCAGCCGCGGCGGCAGCGGCAGCGGCACTGGCGAGCAGCAGATTATTGACGTCGCTGCTGCTGCCGTTGCCACCGAAGCTGGCGGATGGGTTAGCCGCCGATGG Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head ......................................................GAGCAGCAGATTATAGAGG..................................................... 19 2 0.50 0.00 0.00 0.50 0.00 0.00 ............................GCAGTGGCAGCGGCAGCGGC.............................................................................. 20 32 0.03 0.00 0.00 0.03 0.00 0.00 ...........................................................................GCTGCTGCTCCCGTCGCC................................. 18 5 0.20 0.00 0.20 0.00 0.00 0.00 ...................................CCACGGCAGCGGCACTGGC........................................................................ 19 2 0.50 0.00 0.00 0.50 0.00 0.00 ...............................GCGGCAGCGGCAGCCGCG............................................................................. 18 33 0.03 0.00 0.03 0.00 0.00 0.00 .....................GGCAGCGGCGGCAGCAGCGGCA................................................................................... 22 9 0.11 0.00 0.00 0.11 0.00 0.00 ......................GCAGCAGCGGCGGCAGCGGA.................................................................................... 20 28 0.04 0.00 0.04 0.00 0.00 0.00 ......................................................GAGCAACAGATTATTGGCGT.................................................... 20 2 0.50 0.00 0.00 0.50 0.00 0.00 .....................................................CGAGCAGCAGATTATAGAG...................................................... 19 2 0.50 0.00 0.00 0.50 0.00 0.00 .....................................................................................................TGGCGGACGGGTTAGCTGCC..... 20 1 1.00 0.00 0.00 0.00 1.00 0.00
5	chr3R:4070517-4070638 -	59.95	GGACAGTTGAGCGCCATCACCGGCAGCCGCGGCGGCAGCGGCAGCAGCACTGGCGAGCAGCAGATTATTGACGTCGCTGCT-GCTGCCGTTGCCACCGAAGCTGGCTGATGGGTTAGCCGCTGAGGT GGACACTTGAGCGCCAGCAGCTGCAGCGGCCGCAGCAGCAGCGGCAGCGGCGGCCCGCGACTGCG-CCTGATGTTGCAGCAAGGCGGCGGCGGCAGCGGAACCCGGTGAT----TGGCCCATATTGT Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head ................................CAGCAGCAGCGGAAGCGGCAG.......................................................................... 21 47 0.15 0.00 0.00 0.15 0.00 0.00 ...................................CAGCAGCGGCAGTGGTGG.......................................................................... 18 1 2.00 0.00 0.00 2.00 0.00 0.00 .................................AGCAGCAGCGGAAGCGGCAGC......................................................................... 21 44 0.05 0.00 0.00 0.05 0.00 0.00 ............................................................CTGCG-CCAGATCTTGCAGC............................................... 19 1 1.00 0.00 0.00 0.00 1.00 0.00 ...............................GCAGCAGCAGCGGCAGCGGCA........................................................................... 21 40 0.03 0.00 0.03 0.00 0.00 0.00 .................................AGCAGCAGCGGAAGCGGCAG.......................................................................... 20 48 0.02 0.00 0.00 0.02 0.00 0.00 ...............................GCAGCAGCGGCGGCAGCGGA............................................................................ 20 28 0.04 0.00 0.04 0.00 0.00 0.00 ..................AGCTGCAGCGGCCACGGC........................................................................................... 18 3 0.33 0.00 0.33 0.00 0.00 0.00 ...................................CAGCAGCGGCAGTGGTGGC......................................................................... 19 1 1.00 0.00 0.00 1.00 0.00 0.00 ....................................................................................CGGAGGCGGAAGCGGAA.......................... 17 2 0.50 0.00 0.00 0.00 0.50 0.00 .........AGCGCCAGGAGCTGCCGC.................................................................................................... 18 1 1.00 0.00 0.00 0.00 1.00 0.00 ..................................GCGGCAGCGGCAGCCGCG........................................................................... 18 33 0.03 0.00 0.03 0.00 0.00 0.00 ...............................GCAGTGGCAGCGGCAGCGGC............................................................................ 20 32 0.03 0.00 0.00 0.03 0.00 0.00
8	chrX:14235773-14235897 -	59.23	GGACAGTTGAGCGCCATCACCGGCAGCCGCGGCGGCAGCGGCAGCAGCACTGGCGAGCAGCAG-ATTATTGACGT--CGCTGCTGCTGCCGTTGCCACCGAAGCTGGCTGATGGGTTAGCCGCTGAGGT G--CAGTTG--CAGCAGCAGCAGCAGCAGCGGCGGCAGCAGCAGCGGCGGCGGCGGCCAGCAGTACGGCCAGCGGTTCCAGGATACACACACCACCACCGAGTCCGGCGGACCTTTTGGCCGACGGAG- Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head ...........CAGCAGCACCTGCAGCAGCGGCG............................................................................................... 23 5 0.40 0.00 0.00 0.40 0.00 0.00 ............AGCAGCACCTGCAGCAGCGGCG............................................................................................... 22 8 0.25 0.00 0.00 0.25 0.00 0.00 ...................................CAGCAGCAGCGGAGGCGGTG.......................................................................... 20 4 0.25 0.00 0.00 0.25 0.00 0.00 ...............................GCGGCAGCGGCAGCCGCG................................................................................ 18 33 0.03 0.00 0.03 0.00 0.00 0.00 ........................................................CCAGCAGxACGGCCAGCGGT..................................................... 19 2 0.50 0.00 0.00 0.50 0.00 0.00 .................................GGCAGCAGCAGCAGCGTCGG............................................................................ 20 17 0.06 0.00 0.00 0.06 0.00 0.00 ........................AGCAGCGGCGGCGGAAGCA...................................................................................... 19 24 0.04 0.00 0.00 0.04 0.00 0.00 ......................GCAGCAGCGGCGGTGGCAGCAGC.................................................................................... 23 23 0.04 0.00 0.00 0.04 0.00 0.00 ..................................GCAACAGCAGCGGCGGCGGCAGC........................................................................ 23 25 0.04 0.00 0.00 0.04 0.00 0.00 ...........CAGCAGCAGCAGCAGGAGCG.................................................................................................. 20 31 0.03 0.00 0.00 0.03 0.00 0.00 ........................AACAGCGGCGGAAGCAGCAG..................................................................................... 20 11 0.09 0.00 0.00 0.09 0.00 0.00 ...............GGCAGCAGCAGCAGCGTCGG.............................................................................................. 20 17 0.06 0.00 0.00 0.06 0.00 0.00 ............................GCGGCGGCGGCAGCCGCGGC................................................................................. 20 7 0.14 0.00 0.00 0.00 0.14 0.00 ..............................GGCAGCAGCAGCAGCGTCGG............................................................................... 20 17 0.06 0.00 0.00 0.06 0.00 0.00 .....................................GCAGCAGCGGCGGCAGCGGA........................................................................ 20 28 0.04 0.00 0.04 0.00 0.00 0.00 ....................................AGCAGCAGCAGCGGCGCCGGC........................................................................ 21 28 0.04 0.00 0.00 0.04 0.00 0.00 ................GCAACAGCAGCGGCGGCGGCAGC.......................................................................................... 23 25 0.04 0.00 0.00 0.04 0.00 0.00 .....................AGCAGCAGCGGCGGCAGCAGCAC..................................................................................... 23 27 0.04 0.00 0.00 0.04 0.00 0.00 .......TG--CAGCAGCAGCAGAAGCAGCGGC................................................................................................ 24 27 0.04 0.00 0.00 0.04 0.00 0.00 .............GCAGCACCTGCAGCAGCGGCG............................................................................................... 21 9 0.11 0.00 0.00 0.11 0.00 0.00 ..................AGCAGCAGCAGCGGCGCCGGC.......................................................................................... 21 28 0.04 0.00 0.00 0.04 0.00 0.00 ........G--CAGCAGCACCTGCAGCAGCGGC................................................................................................ 23 47 0.02 0.00 0.02 0.00 0.00 0.00 ...................GCAACAGCAGCGGCGGCGGCAGC....................................................................................... 23 25 0.04 0.00 0.00 0.04 0.00 0.00 .................................AGCAGCAGCAGCGGCGCCGGC........................................................................... 21 28 0.04 0.00 0.00 0.04 0.00 0.00 ................................TGGCAGCAGCAGCTGCGGCGGC........................................................................... 22 6 0.17 0.00 0.17 0.00 0.00 0.00 ...................GCAGCAGCGGCGGTGGCAGCAGC....................................................................................... 23 23 0.04 0.00 0.00 0.04 0.00 0.00 ..................AACAGCAGCAGCGGCGGC............................................................................................. 18 434 0.00 0.00 0.00 0.00 0.00 0.00 .....................AGCAGCGGCGGCGGAAGCA......................................................................................... 19 24 0.04 0.00 0.00 0.04 0.00 0.00 ...............AGCAGCAGCAGCGGCGCCGGC............................................................................................. 21 28 0.04 0.00 0.00 0.04 0.00 0.00 ......................GCAGCAGCGGCGGCAGCGGA....................................................................................... 20 28 0.04 0.00 0.04 0.00 0.00 0.00 ...................GCAACAGCAGCGGAGGCAGC.......................................................................................... 20 17 0.06 0.00 0.00 0.06 0.00 0.00
6	chr3R:19969870-19969983 -	54.88	GGACAGTTGAGCGCCATCACCGGCAGCCGCGGCGGCAGCGGCAGCAGCACTGGCGAGCAGCAGATTATTG-ACGTCGCTGCTGCTGCCGTTGCCACCGAAGCTGGC--TGATGGGTTAGCCGCTGAGGT GGCTAACC------CAT--CCGCCAGCTTCGGTGGCAACGGCAGCAGCAGCGACGT-CAATAATCTGCTGCTCGCCAGTGCCGCTGCCGCTGCCGCCGCGGCTGCCGGTGATGG------CGTTCAATT Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head ..................................GCAACGGCGACAGCAGCGAC........................................................................... 20 2 1.00 0.00 0.00 1.00 0.00 0.00 .................................................................................CGCTGCCGCTGTCGCTGC.............................. 18 43 0.02 0.00 0.00 0.00 0.00 0.02 ................................TGGCGACGGGAGCAGCAGC.............................................................................. 19 2 0.50 0.00 0.50 0.00 0.00 0.00
2	chrU:9191826-9191939 +	48.67	GGACAGTTGAGCGCCATCACCG-------GCAGCCGCGGCG--GCAGCGGCAGCAGCACTGGCGAGCAGCAGATTATTGACGTCGCTGCTGCTGCCGTTGCCACCGAAGCTGGCTGATGGGTTAGCCG-CTGAGGT G------TGAGCGCCAGCAGCGCGTCGCGGAAGCCGGGACGAGGCAGGCGCAGAAG------C---CACCAGGCTTCTAAGAGCTCGGCAGCTACGCAGGCC----AAGCTCGTTGCTGTG---GCCTCGCGTGGT Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head ............................................CAGGCGTAGAAG------C---CATCAGGCTT............................................................ 23 2 3.00 0.00 0.00 3.00 0.00 0.00 .............................................................................................................CTCGTTGCTGTG---GCCTCGCGTGG. 23 3 1.33 0.00 0.00 1.00 0.33 0.00 .............................................................................................................CTCGTTGCTGTG---GCCTCGCGTG.. 22 3 1.00 0.00 0.00 0.67 0.33 0.00 .....................................................................................................C----AAGCTCGTTGCTGTG---GCCTCGCGT... 25 3 0.67 0.00 0.00 0.33 0.00 0.33 .......TGAGCGCCAGCAGTGCGTCGCGGA......................................................................................................... 24 2 0.50 0.50 0.00 0.00 0.00 0.00 .........................................................................CTTCTAAGAGCTCGGCAGC............................................ 19 2 0.50 0.00 0.00 0.00 0.00 0.50 .......................................CGAGGCAxGCGCAGAAG------G---C..................................................................... 18 2 0.50 0.00 0.00 0.50 0.00 0.00 ...................GCGCGTCGCGGAAGCCGGGAC................................................................................................ 21 2 0.50 0.00 0.00 0.00 0.00 0.50 ..........................................................................TTCTAAGAGCTCGGCAGCTAC......................................... 21 2 0.50 0.50 0.00 0.00 0.00 0.00 .............................................................................TAAGAGCTCGGCAGCTACGCAGGC................................... 24 2 0.50 0.00 0.00 0.50 0.00 0.00 ..................AGCGCGTCGCGGAAGCCGGGA................................................................................................. 21 2 0.50 0.00 0.00 0.50 0.00 0.00 .................CAGCGCGTCGCGGAAGCCG.................................................................................................... 19 2 0.50 0.00 0.00 0.00 0.50 0.00 ..............CAGCAGCGCGTCGCGGAAGC...................................................................................................... 20 2 0.50 0.00 0.00 0.00 0.00 0.50 ................GCAGTGCGTCGCGGAAGAC..................................................................................................... 19 2 0.50 0.50 0.00 0.00 0.00 0.00 .........................................AGGCAGGCGTGGAAG------C---...................................................................... 16 2 0.50 0.00 0.00 0.00 0.50 0.00 .........................CGCGAAAGCCGGGACGAGGCAGGC....................................................................................... 24 2 0.50 0.00 0.00 0.00 0.50 0.00 .....................................................................................................T----AAGCTCGTTGCTGTG---GCCTCGCGTGG. 27 3 0.33 0.33 0.00 0.00 0.00 0.00 ............................................CAGGCGTAGAAG------C---CATCAGGCTTC........................................................... 24 2 0.50 0.00 0.00 0.50 0.00 0.00 ............................................................................................TACGCAGGCC----AAGCTCGT...................... 18 3 0.33 0.00 0.00 0.00 0.33 0.00 .............................................................................................................CTCGTTGCTGTG---GCCTCGCGTGGT 27 3 0.33 0.00 0.00 0.33 0.00 0.00 ............GCCAGCAGTGCGTCGCGGAAGACGGG.................................................................................................. 26 2 0.50 0.00 0.00 0.50 0.00 0.00 ...........CGCCAGCAGCGCGTCGCGGAAGCCGGGAC................................................................................................ 29 2 0.50 0.00 0.00 0.50 0.00 0.00 ...............AGCAGTGCGTCGCGGAAGACGGG.................................................................................................. 23 2 0.50 0.00 0.00 0.50 0.00 0.00 ......................................................AG------C---CACCAGGCTTCTAAGAGCTC.................................................. 23 2 0.50 0.00 0.00 0.50 0.00 0.00
7	chrU:9926107-9926240 -	42.94	GGACAGTTGAGCGCCATCACC-------GGCAGCCGCGGCG--GCAGCGGCAGCAGCACTGGCGAGCAGCAGATTATTGACGTCGCTGCTGCTGCCGTTGCCACCGAAGCTGGCTGATGGGT-----------------TAGCCGCT-GAGGT G------CGAGCGCCAGCAGCGCGTCGCGGAAGCCGGGACGAGGCAGGCGCAGAAGC---------CACCAGGCTTCTAAGAGCTCGGCAGCTACGCAGG----CCAAGCTCGTTGCTGTGGCCTCGCGTGGTGTTCCCGAGCCTGTGGGAGC Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head ............................................CAGGCGTAGAAGC---------CATCAGGCTT............................................................................. 23 2 3.00 0.00 0.00 3.00 0.00 0.00 .............................................................................................................CTCGTTGCTGTGGCCTCGCGTGG..................... 23 3 1.33 0.00 0.00 1.00 0.33 0.00 .............................................................................................................CTCGTTGCTGTGGCCTCGCGTG...................... 22 3 1.00 0.00 0.00 0.67 0.33 0.00 .........................................................................................................CAAGCTCGTTGCTGTGGCCTCGCGT....................... 25 3 0.67 0.00 0.00 0.33 0.00 0.33 .......TGAGCGCCAGCAGTGCGTCGCGGA.......................................................................................................................... 24 2 0.50 0.50 0.00 0.00 0.00 0.00 .........................................................................CTTCTAAGAGCTCGGCAGC............................................................. 19 2 0.50 0.00 0.00 0.00 0.00 0.50 .......................................CGAGGCAxGCGCAGAAGG---------C...................................................................................... 18 2 0.50 0.00 0.00 0.50 0.00 0.00 ...................GCGCGTCGCGGAAGCCGGGAC................................................................................................................. 21 2 0.50 0.00 0.00 0.00 0.00 0.50 ..........................................................................TTCTAAGAGCTCGGCAGCTAC.......................................................... 21 2 0.50 0.50 0.00 0.00 0.00 0.00 .............................................................................................................................CGCGTGGTGTTCCCGAGCCTGTGG.... 24 2 0.50 0.50 0.00 0.00 0.00 0.00 .............................................................................TAAGAGCTCGGCAGCTACGCAGG----C................................................ 24 2 0.50 0.00 0.00 0.50 0.00 0.00 ..................AGCGCGTCGCGGAAGCCGGGA.................................................................................................................. 21 2 0.50 0.00 0.00 0.50 0.00 0.00 .................CAGCGCGTCGCGGAAGCCG..................................................................................................................... 19 2 0.50 0.00 0.00 0.00 0.50 0.00 ..............CAGCAGCGCGTCGCGGAAGC....................................................................................................................... 20 2 0.50 0.00 0.00 0.00 0.00 0.50 ................GCAGTGCGTCGCGGAAGAC...................................................................................................................... 19 2 0.50 0.50 0.00 0.00 0.00 0.00 .........................................AGGCAGGCGTGGAAGC---------....................................................................................... 16 2 0.50 0.00 0.00 0.00 0.50 0.00 .........................CGCGAAAGCCGGGACGAGGCAGGC........................................................................................................ 24 2 0.50 0.00 0.00 0.00 0.50 0.00 .........................................................................................................TAAGCTCGTTGCTGTGGCCTCGCGTGG..................... 27 3 0.33 0.33 0.00 0.00 0.00 0.00 ............................................CAGGCGTAGAAGC---------CATCAGGCTTC............................................................................ 24 2 0.50 0.00 0.00 0.50 0.00 0.00 ............................................................................................TACGCAGG----CCAAGCTCGT....................................... 18 3 0.33 0.00 0.00 0.00 0.33 0.00 .............................................................................................................CTCGTTGCTGTGGCCTCGCGTGGTGTA................. 27 3 0.33 0.00 0.00 0.33 0.00 0.00 ............GCCAGCAGTGCGTCGCGGAAGACGGG................................................................................................................... 26 2 0.50 0.00 0.00 0.50 0.00 0.00 ...........CGCCAGCAGCGCGTCGCGGAAGCCGGGAC................................................................................................................. 29 2 0.50 0.00 0.00 0.50 0.00 0.00 ...............AGCAGTGCGTCGCGGAAGACGGG................................................................................................................... 23 2 0.50 0.00 0.00 0.50 0.00 0.00 ......................................................AGC---------CACCAGGCTTCTAAGAGCTC................................................................... 23 2 0.50 0.00 0.00 0.50 0.00 0.00
9	chrX:14293642-14293706 -	31.91	GGACAGTTGAGCGCCATCACCGGCAGCCGCGGCGGCAGCGGCAGCAGCACTGGCGAGCAGCAGATTATTGACGTCGCTGCTGCTGCCGTTGCCACCGAAGCTGGCTGATGGGTTAGCCGCTGAGGT CAGCAGCG----------------------TGCAGCAGCGGCAGCA-----------------------------------GTTGCCGTTGCC----CAGCGGGCGGATTGGGCGGCCGGAGGGGG Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head .............................................................................................................TGGGCGGCGGGAGGGGT 17 1 2.00 0.00 0.00 0.00 2.00 0.00 ...............................GCAGCAGCGGCAGCA-----------------------------------GTTTGC....................................... 21 1 1.00 0.00 0.00 0.00 1.00 0.00 ............................................................................................................GTGGGCGGCGGGAGGGGG 18 1 1.00 0.00 1.00 0.00 0.00 0.00 ............................................................................................................................GG 18 6 0.17 0.00 0.00 0.17 0.00 0.00
10	chrX:14294319-14294368 -	25.0	GGACAGTTGAGCGCCATCACC--GGCAGCCGCGGCGGCAGCGGCAGCAGCACTGGCGAGCAGCAGATTATTGACGTCGCTGCTGCTGCCGTTGCCACCGAAGCTGGCTGATGGGTTAGCCGCTGAGGT TGAAGAAGCAGAAGCAACAAAGAAGCAGCCGTAGCAGCAGCAGCAGCAGC------------------------------------------------------------------------------ Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head .........................CAGCCGTAGCCGCAGCAGCAA.................................................................................. 21 2 1.00 0.00 1.00 0.00 0.00 0.00 .......................AGCATCTGTAGCAGCAGCAGCAGCA................................................................................ 25 38 0.03 0.00 0.03 0.00 0.00 0.00 ................................AGAAGAAGCAGCAGCAGC------------------------------------------------------------------------------ 19 39 0.03 0.00 0.03 0.00 0.00 0.00 ....................AGAAGCAGCGGAAGCAGCAG........................................................................................ 20 22 0.05 0.00 0.05 0.00 0.00 0.00 .....................GAAGCATCCGCAGCAGCAGC....................................................................................... 20 51 0.02 0.00 0.00 0.02 0.00 0.00 .........................CAGCCGTAGCCGCAGCAGCA................................................................................... 20 31 0.03 0.00 0.03 0.00 0.00 0.00 ...AGAAGCAGAAGCAAAAAACA......................................................................................................... 20 1 1.00 0.00 0.00 1.00 0.00 0.00 .GAAGAAGAAGAAGCAGC.............................................................................................................. 17 8 0.13 0.00 0.00 0.00 0.13 0.00
3	chrX:17561435-17561464 +	18.55	GGACAGTTGAGCGCCATCACCGGCAGCCGCGGCGGCAGCGGCAGCAGCACTGGCGAGCAGCAGATTATTGACGTCGCTGCTGCTGCCGTTGCCACCGAAGCTGGCTGATGGGTTAGCCGCTGAGGT G---------------------------------------------------------------------ACGCCACCGCCACTGCCGCCGCCACCGAA--------------------------- Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head .................................................................................ACTGCCGCCGCCACAGGA--------------------------- 18 1 1.00 1.00 0.00 0.00 0.00 0.00

droEre2 - 12 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
13	scaffold_4820:8959323-8959448 -	93.73	GGACAGTTGAGCGCCATCACCGGCAGCCGCGGCGGCAGCGGCAGCAGCACTGGCGAGCAGCAGATTATTGACGTCGCTGCTGCTGCCGTTGCCACCGAAGCTGGCTGATGGGTTAGCCGCTGAGGT GGACAGTTGGACGCCATCACCGGCAGCCGCGGCGGCAGCGGCAGCAGCACTGGCGAGCAGCAGATTATTGACGTCGCTGCTGCTGCCGTTGCAACCGAAGCTGGCGGATGGGTTGGCCGCCGAGGT Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head .........................TCGGCGGCGGCAGCGGCAGC................................................................................. 20 12 0.17 0.00 0.00 0.00 0.17 .......................................................................CGGCGCTGCTGCTTCCGT..................................... 18 3 0.33 0.00 0.00 0.00 0.33 ...................................CAGTGGCAGxAGCACTGGC........................................................................ 18 2 0.50 0.50 0.00 0.00 0.00 ..........................................................................CGCTGCAGCTGCCGTTGGA................................. 19 2 0.50 0.00 0.00 0.00 0.50
2	scaffold_4690:14272720-14272845 +	60.27	GGACAGTTG-AGCGCCATCACCGGCAGCCGCGGCGGCAGCGGCAGCAGCACTGGCGAGCAGCAG-ATTATTGACGTC-GCTGCTGCTGCCGTTGCCACCGAAGCTGGCTGATGGGTTAGCCGCTGAGGT AG-CAGCAGCAGCATCATCATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA-TCAGCAGCATCAGCAGCATCAGCAGCAGCAGCTCTCGCAGCCACAGCCA-CCGCCAGCTCCGCAGCAGAAGG Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head ...........................................AGCAGCAGCAGCA-TCAGCA.................................................................. 19 48 0.15 0.00 0.00 0.00 0.15 .........................................GCAGCAGCAGCAGCA-TCAGCA.................................................................. 21 40 0.08 0.00 0.03 0.00 0.05 ............................................GCAGCAGCAGCA-TCAGCA.................................................................. 18 50 0.06 0.00 0.00 0.00 0.06 ........................................AGCAGCAGCAGCAGCA-TCAGCA.................................................................. 22 36 0.08 0.00 0.03 0.00 0.06 ............CACCATCATCAGCAGGAGCAGC............................................................................................... 22 5 0.40 0.20 0.00 0.00 0.20 ........................................AGCAGCAGCAGCAGCA-TCAGCAGCA............................................................... 25 32 0.06 0.00 0.00 0.00 0.06 .....................................................GCA-TCAGTAGCATCAGTAGC....................................................... 20 11 0.09 0.00 0.00 0.00 0.09 ..................CATCAGCAGCAGCAGCAGCAGCAGCAGC................................................................................... 28 454 0.00 0.00 0.00 0.00 0.00 .............ATCATCATCAGCAGCAGCA................................................................................................. 19 14 0.07 0.00 0.00 0.00 0.07 ...............CATCATCATCAGCAGCAGG............................................................................................... 19 35 0.03 0.00 0.03 0.00 0.00 ...........................................................AGCAGCATCAGCAGCATCAGCAGC.............................................. 24 82 0.01 0.01 0.00 0.00 0.00 .............ATCAACATCAGCAGCAGCACCAG............................................................................................. 23 23 0.04 0.00 0.00 0.00 0.04 ...............CATCATCACCTGCAGCAGCA.............................................................................................. 20 22 0.05 0.00 0.00 0.00 0.05 ................ATCATCATCAGCAGCAGCA.............................................................................................. 19 14 0.07 0.00 0.00 0.00 0.07 ............CATCATCACCTGCAGCAGCA................................................................................................. 20 22 0.05 0.00 0.00 0.00 0.05 ..................CATCAGGAGCAGCAGCAGCA........................................................................................... 20 45 0.02 0.00 0.02 0.00 0.00 ............CACCATCATCAGCAGGAGC.................................................................................................. 19 7 0.14 0.00 0.00 0.00 0.14 ...................ATCACCAGCAGCAGCAGCAGCAGCAGC................................................................................... 27 27 0.04 0.04 0.00 0.00 0.00 ......................................................CA-TCAGCAGCAGCAGCAGCATCAGC................................................. 25 51 0.02 0.00 0.00 0.00 0.02 ...............CATCATCATCAGCAGCAGCAGC............................................................................................ 22 12 0.08 0.00 0.00 0.00 0.08 ............CATCAACATCAGCAGCAGCAGCAG............................................................................................. 24 12 0.08 0.08 0.00 0.00 0.00 ........................................AGCAGCAGCAGCAGCA-TCAGC................................................................... 21 40 0.03 0.00 0.00 0.00 0.03 ................................................................CATCAGCAACATCAGCAGC.............................................. 19 40 0.03 0.00 0.03 0.00 0.00 .........CATCATCATCATCATCAGC..................................................................................................... 19 34 0.03 0.00 0.00 0.00 0.03 .........................................GCAGCAGCAGCAGCA-TCAGCAGCA............................................................... 24 35 0.03 0.00 0.00 0.00 0.03 ...............CATCATCATCAGCAGCAGCAGCAGCAGC...................................................................................... 28 5 0.20 0.00 0.00 0.00 0.20 ................ATCATCACCAGCAGCAGCAGCA........................................................................................... 22 8 0.13 0.00 0.13 0.00 0.00 ....................................CATCAGCAGCAGCAGCAGCA-TCAGC................................................................... 25 51 0.02 0.00 0.00 0.00 0.02 ............CACCATCATCAGCAGGAGCA................................................................................................. 20 6 0.17 0.00 0.00 0.00 0.17 ...............................................................GCATCAGTAGCATCAGTAGC.............................................. 20 11 0.09 0.00 0.00 0.00 0.09 ...................ATCAGCAGCAGCAGCAGC............................................................................................ 18 48 0.02 0.00 0.00 0.00 0.02 ................ATCATCACCAGCAGCAGCAG............................................................................................. 20 10 0.10 0.00 0.00 0.00 0.10 ..............................................................AGCATCAGCAGCATCCGCAGCAC............................................ 23 23 0.04 0.04 0.00 0.00 0.00 ................ATCATCAGCACCTGCAGCAGCAGC......................................................................................... 24 3 0.33 0.33 0.00 0.00 0.00 ..................CATCAGCAGCAGCAGCAGCAGC......................................................................................... 22 31 0.03 0.00 0.00 0.00 0.03 ................................................................CATCAGCAGTCTCAGCAGCAGC........................................... 22 21 0.05 0.00 0.00 0.00 0.05 .............ATCATCACCAGCAGCAGCAGCA.............................................................................................. 22 8 0.13 0.00 0.13 0.00 0.00 ............CATCATCATCAGCAGCAGG.................................................................................................. 19 35 0.03 0.00 0.03 0.00 0.00 ........................................AGCAGCAGCAGCAGCA-TCAG.................................................................... 20 44 0.02 0.02 0.00 0.00 0.00 ..................CATCAGCAGCAGCAGCAGAAGCA........................................................................................ 23 41 0.02 0.00 0.00 0.00 0.02 ...CAGCAGCAGCATCATCACCACC........................................................................................................ 22 45 0.02 0.00 0.00 0.00 0.02 .C-CAACAGCAGCATCATCATC........................................................................................................... 20 9 0.11 0.00 0.00 0.00 0.11 ............CATCATCATCATCATCAGC.................................................................................................. 19 34 0.03 0.00 0.00 0.00 0.03 ...........................................AGCAGCAGCAGCA-TCAGCAGCA............................................................... 22 42 0.02 0.00 0.00 0.00 0.02 .........................................GCAGCAGCAGCAGCA-TCAGC................................................................... 20 44 0.02 0.00 0.00 0.00 0.02 ....................................................................AGCAGCATCAGCAGCAGCA.......................................... 19 41 0.02 0.00 0.00 0.00 0.02 ..........................................CAGCAGCAGCAGCA-TCAGCAGCA............................................................... 23 41 0.02 0.02 0.00 0.00 0.00 ..........ATCATCATCATCAGCAGC..................................................................................................... 18 53 0.02 0.00 0.00 0.00 0.02 ...........GCATCATCACCAGCAGCAGC.................................................................................................. 20 8 0.13 0.00 0.00 0.00 0.13 .....GCAGCCGCATCATCATCAGCAGC..................................................................................................... 23 8 0.13 0.00 0.00 0.00 0.13 ................ATCACCAGCAGCAGCAGCAGCAGCAGC...................................................................................... 27 27 0.04 0.04 0.00 0.00 0.00 .............ATCAACATCAGCAGCAGCACCAGC............................................................................................ 24 21 0.05 0.00 0.00 0.00 0.05 .............ATCATCACCAGCAGCAGCAG................................................................................................ 20 10 0.10 0.00 0.00 0.00 0.10 ............CATCATCATCAGCAGCAGCAGCAGCAGC......................................................................................... 28 5 0.20 0.00 0.00 0.00 0.20 ............CATCATCATCAGCAGCAGCAGC............................................................................................... 22 12 0.08 0.00 0.00 0.00 0.08 ......................................................CA-TCAGCAACATCAGCAGC....................................................... 19 40 0.03 0.00 0.03 0.00 0.00 ....................................................AGCA-TCAGCAGCATCCGCAGCAC..................................................... 23 23 0.04 0.04 0.00 0.00 0.00 ..................CATCAGCAGCAGCAGCAGCATCAGC...................................................................................... 25 51 0.02 0.00 0.00 0.00 0.02 ......CATCATCATCATCATCAGC........................................................................................................ 19 34 0.03 0.00 0.00 0.00 0.03
11	scaffold_4784:12318710-12318831 -	58.39	GGACAGTTGAGCGCCATCACCGGCAGCCGCGGCGGCAGCGGCAGCAGCACTGGCGAGCAGCAGATTATT-------------GACGTCGCTGCTGCTGCCGTTGCCACCGAAGCTGGCTGATGGGTTAGCCGCTG-AGGT G----------CCGCAGCAGCGGCAGAGGCGGAGGCAGCGGCAACAGCA-------GCAGCTGTTAATGTGTTGCAGGCAGCGTGGAGGCTGCTGCTGCTGTTGTTGCCGTTGTT-ATTGTTGTGGTTGCTGCTGCTGCT Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head .............................................................................................................................GTTGCTCATGCTGCT 18 8 0.38 0.25 0.00 0.00 0.13 .............................................................................................................................GTTGCTAATGCTGCT 18 12 0.17 0.08 0.00 0.00 0.08 ........................................................................................................................TTGTGGTTGCTGATGTTG.. 18 19 0.05 0.00 0.00 0.00 0.05 ......................................................................................................TGTTGTGGTTGTT-ATTGTTG................. 20 8 0.13 0.00 0.00 0.00 0.13 .......................CAAAGGCGGAGGCATCGGC.................................................................................................. 19 1 1.00 0.00 1.00 0.00 0.00 .....................................................................................................................CTGTTATGGTTGCTGCTGCT... 20 29 0.03 0.00 0.00 0.00 0.03 ................................................................................................................GTT-ATTGTTGTTGTTGAT......... 18 17 0.06 0.06 0.00 0.00 0.00 ................GCAGCGGCGGAGGTGGAG.......................................................................................................... 18 3 0.33 0.00 0.00 0.00 0.33 ................................AGGCAGCGGAAACAGAA-------G................................................................................... 18 1 1.00 0.00 0.00 0.00 1.00 ................GCAGCGGCGGAGGCGGAGG......................................................................................................... 19 5 0.20 0.00 0.20 0.00 0.00 .............................................................................................................................GTTGCTGGTGCTGCT 19 35 0.03 0.03 0.00 0.00 0.00 ..............CAGCAGCGGCAGTGGTGG............................................................................................................ 18 5 0.20 0.00 0.00 0.00 0.20 .......................CAAAGGCGGAGGCATCGGCA................................................................................................. 20 1 1.00 0.00 0.00 0.00 1.00 ..............................................................................CAGTGTGGAxGCTGCTGCT........................................... 18 4 0.25 0.00 0.00 0.00 0.25 ........................AAAGGCGGAGGCATCGGC.................................................................................................. 18 1 1.00 0.00 0.00 0.00 1.00 ......................GCAGAGGCAGCGGCAGCGGC.................................................................................................. 20 13 0.08 0.00 0.00 0.00 0.08 ...................................................................................................TGTTGTTGCTGTTGTT-AT...................... 18 5 0.20 0.00 0.00 0.00 0.20
4	scaffold_4820:8959331-8959459 +	57.12	GGACAGTTGAGCGCCATCACCGGCAGCCGCGGCGGCAGCGGCAGCAGCACTGGCGAGCAGCAGATTATTGA-CGTCGCTGCTGCTGCCGTTGCCACCGAAGCTG--GCTGATGG---------GTTAGCCGCTGAGGT GGCCAACCCA------T--CCGCCAGCTTCGGTTGCAACGGCAGCAGCAGCGACGT-CAATAATCTGCTGCTCGCCAGTGCTGCTGCCGCTGCCGCCGCGGCTGCCGGTGATGGCGTCCAACTGTCCGCCAGTGCGGC Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head ............................TCGGTTGCAACGGCAGCAGCA......................................................................................... 21 2 1.50 0.00 0.50 0.00 1.00 ............................TAGGTTGCAACGGCAGCAGCAG........................................................................................ 22 2 0.50 0.00 0.00 0.00 0.50 ................................TTGCAACGGCAGCAGCAGCGACG................................................................................... 23 2 0.50 0.00 0.00 0.00 0.50 ...............................GTTGCAACGGCAGCAGCAGCGG..................................................................................... 22 5 0.20 0.00 0.20 0.00 0.00 ..........................................................................CCAGTGCTGCTGCCGCTG.............................................. 18 6 0.17 0.00 0.00 0.00 0.17 ...............................GTTGCAACGGCAGCAGCAGCGA..................................................................................... 22 2 0.50 0.00 0.00 0.00 0.50 ................................TTGCAACGGCAGCAGCAGCG...................................................................................... 20 2 0.50 0.00 0.00 0.00 0.50
6	scaffold_4690:6205290-6205397 -	54.84	GGACAGTTGAGCGCCATCACCGGCAGCCGCGGCGGCAGCGGCAGCAGCACTGGCGA--GCAGCAGATTATTGACGTCGCTGCT---GCTGCCGTTGCCACCGAAGCTGGCTGATGGGTTAGCCGCTGAGGT AGCCACAGCAGCAACAGCCACAGCAGCAGCAGCAGCAGCGGCAGCAGCAGCAGCGATGGCAGCAACTCCACCGCATCGCAGCCTCTGTCGCCGTCGCTGCCGCAGCCG----------------------- Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head ...........................................................................TCGCAGCCTCTGTCGCCGTCGC.................................. 22 1 8.00 0.00 2.00 0.00 6.00 ...........................................................................TCGCAGCCTCTGTCGCCGTCG................................... 21 1 4.00 0.00 0.00 0.00 4.00 ..........................................................................ATCGCAGCCTCTGTCGCCGTCG................................... 22 1 2.00 0.00 0.00 0.00 2.00 ............................................................................CGCAGCCTCTGTCGCCGTCGCT................................. 22 1 2.00 0.00 1.00 0.00 1.00 ................GACACAGCAGCAGCAGCAGC............................................................................................... 20 29 0.03 0.00 0.00 0.00 0.03 ...........................AGCAGCAGCAGCGGGAGC...................................................................................... 18 43 0.02 0.00 0.00 0.00 0.02 ...........................................................................TCGCAGCCTCTGCCGCCGTCG................................... 21 1 1.00 0.00 0.00 0.00 1.00 ........CACCAACACCCACAGCAGCAGC..................................................................................................... 22 9 0.11 0.00 0.00 0.00 0.11 ..............CACCCACAGCGGCAGCAGCA................................................................................................. 20 45 0.02 0.00 0.00 0.00 0.02 ..............................AGCAGCAGCGTCAGCAGCAGCAGC............................................................................. 24 36 0.03 0.00 0.00 0.00 0.03 ..................CAGAGCAGCAGCAGCCGCAGC............................................................................................ 21 49 0.02 0.00 0.00 0.00 0.02 ...GACAGCGGCAACAGCCACAG............................................................................................................ 20 1 1.00 0.00 0.00 0.00 1.00 ............AACACCCACAGCAGCCGCAGC.................................................................................................. 21 8 0.13 0.13 0.00 0.00 0.00 ....................................AGCGGCAGCAGCAGCAGCGA........................................................................... 20 9 0.11 0.00 0.00 0.00 0.11 ...........................................................................TCGCAGCCTCTGTCTCCGTCGC.................................. 22 1 1.00 0.00 1.00 0.00 0.00 ............................................................................CGCAGCCTCTGTCGCCGT..................................... 18 1 1.00 0.00 0.00 0.00 1.00 .................CCACATCAGCCGCAGCAGCA.............................................................................................. 20 50 0.02 0.00 0.00 0.00 0.02 ...................................CAGCGGCAGAAGCAGAAGC............................................................................. 19 41 0.02 0.00 0.00 0.00 0.02 ............................GCAGCAGCAGCGGCAGCAGCAGCG............................................................................... 24 42 0.02 0.00 0.00 0.00 0.02 ........CACCAACACCCACAGCAGCAGCAGCA................................................................................................. 26 9 0.11 0.00 0.00 0.00 0.11 ...........................................................................TCGCAGCCTCTGTCGCCGTCGCTT................................ 24 1 1.00 0.00 0.00 0.00 1.00 ..........................................AGCAGCAGCAGCGGTGGT....................................................................... 18 28 0.04 0.00 0.04 0.00 0.00 .........................................CAGCAGCAGCAGTGGTGGC....................................................................... 19 25 0.04 0.00 0.00 0.00 0.04 ..........................................AGCAGCAGCAGTGATGGA....................................................................... 18 1 1.00 0.00 0.00 0.00 1.00 ........CACCAACACCCACAGCAGC........................................................................................................ 19 11 0.09 0.00 0.00 0.00 0.09 .....................AGCAGCAGCAGCGGCAGCGGC......................................................................................... 21 44 0.02 0.00 0.00 0.00 0.02 ................................CAGCAGCGGCAGCAGAAGCAGA............................................................................. 22 44 0.02 0.02 0.00 0.00 0.00 ..............................................................................CAGCCTCTGTCGCCGTCGCTTT............................... 22 1 1.00 0.00 0.00 0.00 1.00 ..............................AGGAGCAGCGGCAGCAGCA.................................................................................. 19 44 0.02 0.02 0.00 0.00 0.00 ..................................................CACCAATGGCAGCAACTC............................................................... 18 1 1.00 0.00 0.00 0.00 1.00 .........ACCAACACCCACAGCAGCAGCAGCAGC............................................................................................... 27 5 0.20 0.00 0.00 0.00 0.20 ...............................GCAGCCGCGGCAGCAGGAGCAGC............................................................................. 23 28 0.04 0.00 0.00 0.00 0.04 ...........................AGCAGCAGCAGCGGCAGCGGC................................................................................... 21 44 0.02 0.00 0.00 0.00 0.02 ..............................................................................CGGCCTCTGTCGCCGTCGCTG................................ 21 1 1.00 0.00 0.00 0.00 1.00 ...............................GCAGCAGCGTCAGCAGCAGCA............................................................................... 21 51 0.02 0.00 0.00 0.00 0.02 .........................GCAGCAGCAGCAGCGGGAGC...................................................................................... 20 27 0.04 0.00 0.00 0.00 0.04 ..........................................................................ATCTCAGCCTCTGTCGCCGTCG................................... 22 1 1.00 0.00 0.00 0.00 1.00 ................GCCACAGCCGAAGCAGCAG................................................................................................ 19 21 0.05 0.00 0.00 0.00 0.05 ............................................................................CGCAGCCTCTGTCGCCGTAGCT................................. 22 1 1.00 0.00 0.00 0.00 1.00 ...........CAACTTCCACAGCAGCAGCAGCAGCA.............................................................................................. 26 14 0.07 0.07 0.00 0.00 0.00 ..............................AGCAGCAGCGGGAGTAGCAGCAG.............................................................................. 23 22 0.05 0.00 0.00 0.00 0.05 .CACACAGCAGCAACAGCCA............................................................................................................... 19 1 1.00 0.00 0.00 0.00 1.00 .............................CAGCAGCAGCGGCAGCAGC................................................................................... 19 33 0.03 0.00 0.00 0.00 0.03 ..............................................................................CAGCCTCTGTCGCCGTCGCTT................................ 21 1 1.00 0.00 1.00 0.00 0.00 .......................CAGCAGCAGCAGCAGCGGCAGGGG.................................................................................... 24 51 0.02 0.00 0.00 0.00 0.02 .....................AGCAGCAGCAGCAGCAGCG........................................................................................... 19 45 0.02 0.00 0.00 0.00 0.02 ..............................................................................CAGCCTCTGTCGCCGTCGCTG................................ 21 1 1.00 0.00 1.00 0.00 0.00 .........................................................................AATCGCAGCCTCTGTCGCCGTC.................................... 22 1 1.00 0.00 0.00 0.00 1.00 ................GCCACAGCCGAAGCAGCA................................................................................................. 18 27 0.04 0.00 0.00 0.00 0.04 ............................................................................CGCAGCCTCTGTCGCCGTT.................................... 19 1 1.00 0.00 0.00 0.00 1.00 AGCCACATCAGCAACAGCAAC.............................................................................................................. 21 41 0.02 0.00 0.00 0.00 0.02 .....................................................................TCCGCATCGCCGCCTCTG............................................ 18 1 1.00 0.00 0.00 0.00 1.00 ............................................................................CGCAGCCTCTGTCGCCGTC.................................... 19 1 1.00 0.00 0.00 0.00 1.00 ...........................................................................TCGCAGCCTCTGCCGCCGTCTC.................................. 22 1 1.00 0.00 0.00 0.00 1.00 ..............................AGCAGCAGAGGCAGCAGGAGC................................................................................ 21 65 0.02 0.02 0.00 0.00 0.00 .................CCACAGCAGCAGCAGCAGCAT............................................................................................. 21 34 0.03 0.00 0.03 0.00 0.00
14	scaffold_4929:12130627-12130735 -	52.74	GGACAGTTGAGCGCCATCACCGGCAGCCGCGGCGGCAGCGGCAGCAGCACTGGCG-AGCAGCAGATTATTGACGTCGCTGCTGCTGCCGTTGCCACCGAAGCTGGCTGATGGGT------TAGCCGCTGAGGT G----------------------CTGCCGCGACTGAAGTAGTAGCTGTACTGCTGCTGCTGCTGC-TGCTGTTGTTGCTGCTGCTGCTGTTGCTGCTGCAGTTG-CTGGTGCTGCAGCTGCAACTGCTGGGCC Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head ....................................................................................TGCTCTCGCTGCTGCAGTTG-CTG......................... 23 3 0.33 0.00 0.00 0.00 0.33 ..............................................................................................GCTGAAGTGG-CTGGTGCTG................... 19 15 0.07 0.07 0.00 0.00 0.00 ...............................................................................................CTGGAGATG-CTGGTGCTGC.................. 19 31 0.03 0.03 0.00 0.00 0.00
9	scaffold_4770:16308484-16308611 -	48.09	GGACAGTTGAGCGCCATCACCGGCAGCCGCGGCGGCAGCGGCAGCAGC--ACTGGCGAGCAGCAGATTATTGACGTCGCTGCTGCTGCCGTTGC--CACCGAAGCTGGCTGATGGGTTAGCCG---CTGAGGT C---CATTGGATGTGGTTACC--CCACCATAG-AGCAGTGGTTGCAGCAGGCTGTTGAGCGGCTGCATCCCCATGCCGCCCTGGCTGTTGTCAATGTATTGTGTTTGGCTGGTAACTTGGCTGAATCCATGAC Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head .................................................................CATCCACATGCTGCCCTG.................................................. 18 1 1.00 0.00 0.00 0.00 1.00
3	scaffold_4770:3437447-3437562 +	47.86	GGACAGTTGAGCGCCATC---ACCGGCAGCCGCGGCGGCAGCGGCAGCAGCACTGGCGAGCAGCAGATTATTGACGTCGCTGCTGCTGCCGTTGCCACCGAAGCTGGCTGATGGGTTAGCCGCTGAGGT A--AAGATGACTGTCATCGAAACCGGCACACCCGCCGCCAACGGATGCTACAC---------GCAAACTATTCGCGAACCCGATTCCAGCAATCCAA--AGTCCTACACGGAGACGCAGCACCTGATAT Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head ....................................................................................TCAAGCAATCCAA--GGTCC......................... 18 1 1.00 0.00 0.00 0.00 1.00
1	scaffold_4690:3460611-3460724 +	43.81	GGACAGTTGAGCGCCATCACCGGCAGCCGCGGCGGCAGCGGCAGCAGCACTGGCGAGCAGCAGATTATTGACGTCGCTGCTGCTGCCGTTGCCAC---------------CGAAGCTGGCTGATGGGTTAGCCGCTGAGGT GCCCGTTTCCATTCCAGCTCCGGCGCCCTTGGCTGCTCCCGCTCCAGCTCCAGCT----CCA-------------GCTGCAGCTCCCGTTGCCGTTGTCCAGGCGGTGACCACCTCTGGCTCCTA----------CCAGCA Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head ..............................................GCTCCCGCT----CCG-------------GCTGCAG........................................................... 19 2 1.50 0.00 0.00 0.00 1.50 ..................................GCTCCCGCTCCGGCTGCAG........................................................................................ 19 2 1.50 0.00 0.00 0.00 1.50 ...............................................CTCCCGCT----CCG-------------GCTGCAGCT......................................................... 20 2 1.00 0.50 0.00 0.00 0.50 ...................................CTCCCGCTCCGGCTGCAGCT----.................................................................................. 20 2 1.00 0.50 0.00 0.00 0.50 .........................................CTCCAGCTCCAGCT----TCA-------------TC................................................................ 19 2 1.00 0.50 0.00 0.00 0.50 ...............................................CTCCAGCT----CCA-------------GCTTCATC.......................................................... 19 2 1.00 0.50 0.00 0.00 0.50 ..........................................TCCAGCTCTAGCT----CCA-------------GTT............................................................... 19 1 1.00 0.00 0.00 0.00 1.00 ...........................................CCAGCTCCAGCT----CCA-------------GCTCCA............................................................ 21 3 0.33 0.33 0.00 0.00 0.00 ..............................................GCTCCCGCT----CCG-------------GCTGCAGCT......................................................... 21 2 0.50 0.50 0.00 0.00 0.00 ..............................................GCTCCCGCT----CCG-------------GCTGCA............................................................ 18 2 0.50 0.00 0.00 0.00 0.50 .....................................CCAGCTCCAGCTCCAGCT----CCA-------------.................................................................. 21 3 0.33 0.33 0.00 0.00 0.00 ...................................CTxCCGCTCCTGCTCCAGCT----CCA-------------.................................................................. 22 1 1.00 1.00 0.00 0.00 0.00 ...........................................CCATCTCCAGCT----ACA-------------GCTGC............................................................. 20 1 1.00 1.00 0.00 0.00 0.00 .................................................CCAGCT----CCA-------------GCTCCAGCTCCA...................................................... 21 3 0.33 0.33 0.00 0.00 0.00 ..................................GCTCCCGCTCCGGCTGCAGCT----.................................................................................. 21 2 0.50 0.50 0.00 0.00 0.00 ..................................GCTCCCGCTCCGGCTGCA......................................................................................... 18 2 0.50 0.00 0.00 0.00 0.50 .........................................................................................................................................AGCA 18 22 0.05 0.00 0.00 0.00 0.05 .........................................................................................................................................AGCA 19 35 0.03 0.03 0.00 0.00 0.00 ...............................GCTGCTCCCGCTCCGGCTGC.......................................................................................... 20 3 0.33 0.33 0.00 0.00 0.00
7	scaffold_4690:9052616-9052774 -	36.79	GGACAGTTGAGCGCCATC------ACCGGCAGCCGCGGCGGCAG------------------CGGCAGCAGCACTGGCGAGCAGCAGATTATTGACGTCGCTGCTGCTGCCGTTGCCACCGAAGCTGGCTGATG--------GGTTAGCCGC-TGAGGT GGCCATTCCACTGCCGCCCGGTGTACAGGAACCGGAGGCACCAGCTCCTCCGAACGGCGGTGCTCCTGAACCGCCGGCCACAGCCATTCCACCCATGCCGCTCAAGCCGCCATTGCCTGCGCCGCTGCCCGCAGCGGGCTTCTTCCAGCCGCGCCAGTT Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head .............................................................................................................CCAGTGCCTGCGCCGCCGC............................... 19 1 1.00 1.00 0.00 0.00 0.00 ............................................................................................................GCCATTGCCTGCGCCTCCG................................ 19 1 1.00 0.00 0.00 0.00 1.00
5	scaffold_4690:6163650-6163710 -	26.77	GGACAGTTGAGCGCCATCACCGGCAGCCGCGGCGGCAGCGGCAGCAGCACTGGCGAGCAGCAGATTATTGACGTCGCTGCTGCTGCCGTTGCCACCGAAGCT---GGCTGATGGGTTAGCCGCTGAGGT A----------------------------------------------------------GCGGAATGTTAA-----CTGCTACT--CACTGC---CAAATTTCTGGGCCGATGCGGTGGGCAGTGGGGC Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head .................................................................TGTTGA-----CTGCTGCT--CACT....................................... 18 1 2.00 0.00 0.00 0.00 2.00
16	scaffold_4929:12636756-12636762 -	4.84	GGACAGTTGAGCGCCATCACCGGCAGCCGCGGCGGCAGCGGCAGCAGCACTGGCGAGCAGCAGATTATTGACGTCGCTGCTGCTGCCGTTGCCACCGAAGCTGGCTGATGGGTTAGCCGCTGAGGT C-----------------------------------------------------------------------------------------------------------------------TGCGGT Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head	None	None

droFic1 - 14 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
19	scf7180000453906:760202-760324 -	75.47	GGACAGTTGAGCGCCATCACCGGCAGCCGCGGCGGCAGCGGCAGCAG------------CACTGGCGAGCAGCAGATTATTGACGTCGCTGCTGCTGCCGTTGCCACCGAAGCTGGCTGATGGGTTAGCCGCTGAGGT GGACAGTTGAACGCCATCGCCGGCAGCCGCGGCGGCAGCGGCAGCAGCAGCGGCTGCCGCACTGGCGAGCAGCAGATTGTTCACTTCGCTGCTGCTGCCGTTGCCACCGAAGCTGGCGGATGG--------------- Size Hit Count Total Norm
4	scf7180000453833:644824-644946 +	53.23	GGACAGTTGAGCGCCATCACCGGCAGCCGCGGCGGCAGCGGCAGCAGCACTGGCGA--GCAGCAG----ATTATTGACGTCGCTGCTGCTGCCGTTGCCACCGAAGCTGGCTGATGGGTTAGCCGCTGAGGT A---------GCACCACCACCAGCAGCAGTAGCAGCAGCAGCAGCAACAATAACAACAACAACAACTCGGCCGGAAACAACGGTGGTGCGAACGCCACCTCAATAAGCAGCGGTTCAACTGGCGGCGGGGGA Size Hit Count Total Norm
18	scf7180000453842:922232-922358 -	51.78	GGACAGTTGAGCGCCATCACCGG-CAGCCGCGGCGGCAGCGGCAGCAGCACTGGCGAGCAGCAGATTATTGACGTCGCTGCTGCTGCCGTTGCCACCGAAGCTGGCTGA----TGGGTTAGCCGCTGAGGT CACTGGCAACTTTCTATCACAGATCAGCTGAGTTGTTTGCGCAGTGGGCGTCGACGAG---GTGGTTATTGTTGCCGCCGTCGCTGCCGTTGCCACTGGGGATGGATTTATGCTGGG-AGCCTGCTCTGCC Size Hit Count Total Norm
14	scf7180000454106:765884-766001 +	51.2	GGACAGTTGAGCGCCATCACCGGCAGCCGCGGCGGCAGCGGCAGCAGCACTGGCGAGC---AGCAGATTATTGACGTCGCTGCTGCTGCCGTTGCCACCGAAGCTGGCTGATGGGTTAGCCGCTGAGGT CCA-----------AGTCCCCGGCTGCGGCGGCGGCAGCGGCGGCGGCCGCGGGGCACTGGGGCACGCTCTGGCCGCTGCTGCCGACGCCGCTGCCGCTCATGCC-GCTGCTGCCGCTGCTCCCGAGCA Size Hit Count Total Norm
10	scf7180000454045:557843-557976 +	51.1	GG-----ACAGTTG-AGCGCCATCACCGGCAGCCGCGGCGGCAGCGGCAGCAGCACTGGCGAGCAGCAG-ATTATTGACGTCGCTGCTGCTGCCGTTGCCACCGAAGCTGGCTGATGGGTTAGCCGCTGAGGT-- GGCAGCGGCGGTCGCGGCAGCAGCAGCAGCAGCAGCGGCGGCAGCAGCGGCGGCGGCGGCCAGCAGCACGGCCAGCGG-ATCGCGGATACACACACCACCACCGAGTCCGGCGGACCTCCTGGCCGATGGAGCCA Size Hit Count Total Norm
11	scf7180000454073:1715450-1715569 +	49.88	GGACAGTTGAGCGCCATCACCGGCAGCCGCGGCGGCAGCGGCA------GCAGCACTGGCGAGCAGCAGATTATTGACGTCGCTGCTGCTGCCGTTGCCACCGAAGCTGGCTGATGGGTTAGCCGCTGAGGT GAACTGCTGCGAATCCGCGCT--CGACTGCGGACTCAGCCCCAGGCTGTGTGGCGCC-ACGTGTGGCAGTCCCC-----CCGCCGCCGCCGTCGCCGCCGCCGAGT----TCGAGGATGCGGAAAGCGAGGC Size Hit Count Total Norm
8	scf7180000453927:1222577-1222673 +	48.71	GGACAGTTGAGC---------GCCATCACCGGCAGCCGCGGCGGCAGCGGCAGCAGCACTGGCGAGCAGCAGATTATTGACGTCGCTGCTGCTGCCGTTGCCACCGAAGCTGGCTGATGGGTTAGCCGCTGAGGT GCCCAGGAGAGCCTGCACATAGCCAGCAGCAGCAGCGGCGGCGACGGCGGCCGCCGAACTGGAG---------TTGTTGTTGTTGCCACTGTTGCTGTTGCCACCG----------------------------- Size Hit Count Total Norm
20	scf7180000453948:983062-983185 -	48.53	GGACAGTTGAGCGCC-ATCACCGGCAGCCGCGGCGGCAGCGGCAGCAGC---ACTGGC------GAGCAGCAGATTATTGACGTCGCTGCTGCTGCCGTTGCCACCGAAGCTGGCTGATGGGTTAGCCGCTGAGGT GGCTGGCACTGCGCCCGGTTCTGGTGCCCGTCGCAGGAGGAGGAGCAGCGGGAGTCGCCGGAGGAGCCGCCAGGGTATTGTT--CGCCGCTGG---GCTGGTGGCCAA-------TGTTGGGTTCATTGTTGGCCC Size Hit Count Total Norm
15	scf7180000452523:588486-588624 -	48.08	GGACAGTTGAGCGCCATCACCGGCAGCCGCGGCGGCAGCGGCAGCAGCACTGGCGAGCAGCAGATTATTG---------ACGTCGCTGCTGCTGCCGTTGCCACCGAAGCTG--GCTGATGGGTTAGCCGCTGAGGT---- GGCACTTGGTGCATGACCACGTGTTGCTGTTGCGGCTGCTGCTGTTGCGGCGGCGA--AGCGGATTGCTGCAACGCCCGCTGTTGCTGCTGCTGCTGCTGCACTTGCTGCTGCTGTTGCTGCACTTGTTGCTGTGGCTGCT Size Hit Count Total Norm
6	scf7180000453906:760175-760320 +	46.94	GGACAGTTGAGCGCCATCACCGGCA------------GCCGCGGCGGCAGCGGCAGCAGCACTGG--CGAG--------------------CAGCAGATTATTGACGTCGCTGCTGCTGCCGTTGCCACCGAAGCTGGC--TGATGGGTTAGCCGCTGAGGT GGACAAACCACCGCCACCACGGGCAACCCATCCGCCAGCTTCGGTGGCAACGGCAGCAGCAGCGAAGTGAACAATCTGCTGCTCGCCAGTGCGGCA----------GCCGCTGCTGCTGCCGCTGCCGCCGCGGCTGCCGGCGATGG------CGTTCAACT Size Hit Count Total Norm
5	scf7180000453839:334284-334420 +	46.86	GGACAGTTGAGCGCCATCACCGGCAGCCG-------CGGCGGCAGCGGCAGCAGCACTGGCGAGCAGCAGATTATTG-----------------------ACGTCGCTGCTGCTGCC-GTTGCCACCGAAGCTGGCTGATGGGTTAGCCGCTGAGGT GGTGTG-CGAGCGAGATGGCTGGCAGGCGGCGGCAACGGCAGCAGCAGCAGCAGCAACACCGAGCGGCAGAACATGAAAAAATTAACTTAACAACTAGAAAAATGGCTGTTATTGCGTGT-------------------TGTTGTAAATGCCGATGT Size Hit Count Total Norm
2	scf7180000453829:1431370-1431465 +	44.98	GGACAGTTG-AGCGCCATCACCGGCAGCCGCGGCGGCAGCGGCAGCAGCACTGGCG-----AGCAGCAGATTATTGACGTCGCTGCTGCTGCCGTTGCCACCGAAGCTGGCTGATGGGTTAGCCGCTGAGGT AG-CAGCAGCAGCACCAACATCGGCAGCAGTGGCAGTGGCAGCAGCAGCGACAGCGGCAGAGGCAGCAAGTCA--------GCTGCAGCCGACTTTATGAATGAA--------------------------- Size Hit Count Total Norm
1	scf7180000453812:1112738-1112834 +	41.41	GGACAGTTGAGCGCCATCACCGGC---AGCCGCGGCGGCAGCGGCAGCAGCACTGGCGAGCAGCAGATTATTGACGTCGCTGCTGCTGCCGTTGCCACCGAAGCTGGCTGATGGGTTAGCCGCTGAGGT CTGCAG--CGGCACCAGCACCTGCTTCTGCCCCAGTGGCAACGCCTGTGGCCCATGC-AGCAGCAGC--------------------------TCCTCCTGTGCAAGTTGCTAG---CCCCGTGGCAGT Size Hit Count Total Norm
21	scf7180000454072:3124600-3124680 -	38.71	GGACAGTTGAGCGCCATCACCGGCAGCCGCGGCGGCAGCGGCAGCAGCACTGGCGAGCAGCAGATTATTGACGTCGCTGCTGCTGCCGTTGCCACCGAA------GCTGGCTGATGGGTTAGCCGCTGAGGT TGC--------------------------------------------------CGCCCAGCAGGGCGTTGATGTTGCCGTTGCTGCTGTTGCCACTGCCACCACTGCT-GCCGTTGCTGTTGCTGCTGCTGC Size Hit Count Total Norm