dme-mir-iab-4- 12- and 20-way alignments

dme-mir-iab-4	chr3R:12681997-12682064 +	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 12682003-12682024
   star strand at position 12682037-12682059
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chr3R:12681982-12682079 +	CGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGAGAGCACTAACAAC
droSim1	chr3R:8791202-8791299 -	CGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGATAGCACGAGCAAC
droSec1	super_12:1472230-1472327 -	CGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGATAGCACGAGCAAC
droYak2	chr3R:11708953-11709050 -	CGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGAAAGCACGAGCAAC
droEre2	scaffold_4770:8952402-8952499 -	CGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGAAAGCACGAGCAAC
droAna3	scaffold_13340:7215188-7215285 -	TGATTTTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGTAACACCTTCAAC
dp4	chr2:17671752-17671849 +	TGAACCTGTGCGACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCAAC
droPer1	super_0:11526558-11526655 +	TGAACCTGTGCGACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCAAC
droWil1	scaffold_181130:4905585-4905682 -	TGAATCTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATGCTATCCGGTATACCTTCAGTATACGTAACACGATGAAACACCAACAAC
droVir3	scaffold_12855:414691-414788 -	AGAGCCTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCGAC
droMoj3	scaffold_6540:1943729-1943826 +	TGAGCCTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCAAC
droGri2	scaffold_14906:12815104-12815201 +	AGAACCTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCAAC

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chr3R:12681982-12682079 +	NA	CGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGAGAGCACTAACAAC
droSim1	chr3R:8791202-8791299 -	1	CGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGATAGCACGAGCAAC
droSec1	super_12:1472230-1472327 -	1	CGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGATAGCACGAGCAAC
droYak2	chr3R:11708953-11709050 -	2	CGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGAAAGCACGAGCAAC
droEre2	scaffold_4770:8952402-8952499 -	2	CGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGAAAGCACGAGCAAC
droEug1	scf7180000409804:92907-93004 +	1	TGATTGTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAGCACGAGCAAC
droBia1	scf7180000299102:622778-622875 +	1	TGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAGCACGAGCAAC
droTak1	scf7180000411269:86577-86674 +	1	TGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAGCACGAGCAAC
droEle1	scf7180000486474:1729438-1729535 +	1	TGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAGCACGAGCAAC
droRho1	scf7180000759657:23990-24087 +	1	TGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAGCACGAGCAAC
droFic1	scf7180000452523:122363-122460 +	1	TGATTGTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAGCACGAGCAAC
droKik1	scf7180000302313:151175-151272 +	1	TGACTCTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACAAGCAAC
droAna3	scaffold_13340:7215188-7215285 -	1	TGATTTTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGTAACACCTTCAAC
droBip1	scf7180000396708:1638868-1638965 +	1	TGATTTTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACTTTCAAC
dp4	chr2:17671752-17671849 +	1	-GAACCTGTGCGACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCAAC
droPer1	super_0:11526558-11526655 +	1	-GAACCTGTGCGACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCAAC
droWil1	scaffold_181130:4905585-4905682 -	1	TGAATCTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATGCTATCCGGTATACCTTCAGTATACGTAACACGATGAAACACCAACAAC
droVir3	scaffold_12855:414691-414788 -	1	AGAGCCTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCGAC
droMoj3	scaffold_6540:1943729-1943826 +	1	TGAGCCTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCAAC
droGri2	scaffold_14906:12815108-12815201 +	1	-----CTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCAAC

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

CGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGAGAGCACTAACAAC

Size

Hit Count

Total Norm

droSim1

CGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGATAGCACGAGCAAC	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
.....................ACGTATACTGAATGTATCCTGA.......................................................	22	2	513.00	65.00	3.00	9.50	435.50
.....................ACGTATACTGAATGTATCCTG........................................................	21	2	140.50	12.00	1.50	9.00	118.00
.....................ACGTATACTGAATGTATCCTGG.......................................................	22	2	102.50	0.00	1.50	1.50	99.50
.....................ACGTATACTGAATGTATCC..........................................................	19	2	36.00	0.00	0.00	1.50	34.50
.....................ACGTATACTGAATTTATCCTGA.......................................................	22	2	18.00	0.00	0.00	0.00	18.00
.....................ACGTATACTGAATGTATCCTGAA......................................................	23	2	10.00	0.00	0.00	0.50	9.50
.....................ACGTATACTGAATGTATC...........................................................	18	2	8.50	0.00	0.00	0.50	8.00
.....................ACGTATACTGAATTTATCCTG........................................................	21	2	7.50	0.00	0.00	0.00	7.50
.....................ACGTATACTGAATGTATCCT.........................................................	20	2	6.50	2.00	0.50	1.00	3.00
.....................ACGTATACTGAATCTATCCTGA.......................................................	22	2	6.00	0.00	0.00	0.00	6.00
.....................ACGTATACTGAATTTATCCTGG.......................................................	22	2	4.00	0.00	0.00	0.00	4.00
.....................ACGTATACTGAATGTATTC..........................................................	19	4	1.75	0.00	0.00	0.00	1.75
......................CGTATACTGAATGTATCCTGAT......................................................	22	2	3.50	1.00	0.00	0.00	2.50
..........................................................TATACCTTCAGTATACGTAAC...................	21	2	2.50	0.50	0.00	0.00	2.00
.......................................................CGGTATACCTTCAGTATACGTAAC...................	24	2	2.50	0.50	0.00	0.00	2.00
.....................ACTTATACTGAATGTATCCTGA.......................................................	22	2	2.00	0.00	0.00	0.00	2.00
......................CGTATACTGAATGTATCCTGAA......................................................	22	2	2.00	0.00	0.00	0.00	2.00
.....................ACGTATACTGAATTTATCC..........................................................	19	2	2.00	0.00	0.00	0.00	2.00
.....................ACGTATACTGAATGTATCCGG........................................................	21	2	2.00	0.00	0.00	0.00	2.00
.....................ACGTATACTGAATCTATCC..........................................................	19	2	2.00	0.00	0.00	0.00	2.00
.....................ACGTATACTGAATxTATCCTGA.......................................................	21	2	2.00	0.00	0.00	0.00	2.00
...................AAACGTATACTGAATGTATCCT.........................................................	22	2	1.50	1.00	0.00	0.00	0.50
.....................ACGTATACTGAATCTATCCTG........................................................	21	2	1.50	0.00	0.00	0.00	1.50
..........................................................TATACCTTCAGTATACGTAACA..................	22	2	1.50	1.50	0.00	0.00	0.00
.....................ACGTATACTGAATGTATCCTGAT......................................................	23	2	1.50	0.00	0.00	0.00	1.50
...................AAACGTATACTGAATGTATCCTG........................................................	23	2	1.50	0.00	0.00	0.00	1.50
.....................ACGTATACTGAATTTATCCT.........................................................	20	2	1.50	0.00	0.00	0.00	1.50
.....................ACGTATACTGAATxTATCCTGG.......................................................	21	2	1.50	0.00	0.00	0.00	1.50
......................CGTATACTGAATGTATCCTG........................................................	20	2	1.00	0.00	0.00	0.50	0.50
................CGTGGACGTATACTGAATGTATCCTG........................................................	26	2	1.00	0.00	0.00	0.00	1.00
.....................ACGTATACTGAATGTATCCTGAAA.....................................................	24	2	1.00	0.00	0.00	0.00	1.00
.....................ACGTATACTGAATGTATCCTGAAC.....................................................	24	2	1.00	0.00	0.00	0.00	1.00
....................CACGTATACTGAATGTATCCTG........................................................	22	2	1.00	0.00	0.00	0.00	1.00
......................CGTATACTGAATGTATCCTGAC......................................................	22	2	1.00	0.50	0.00	0.00	0.50
.....................ACGTATACTGAAxxTATCCTGA.......................................................	20	2	1.00	0.00	0.00	0.00	1.00
......................CGTATACTGAATGTATCCTGAAA.....................................................	23	2	1.00	0.00	0.00	0.00	1.00
....................AACGTATACTGAATGTATCCTG........................................................	22	2	1.00	0.00	0.00	0.00	1.00
......................CGTATACTGAATGTATCCTGACT.....................................................	23	2	1.00	0.00	0.00	0.00	1.00
................CGTGGACGTATACTGAATGTATCCTGA.......................................................	27	2	1.00	0.00	0.00	0.00	1.00
.....................ACGTATACTGAATGTATCCCG........................................................	21	4	0.50	0.25	0.00	0.00	0.25
.....................ACGTATACTGCATGTATCCT.........................................................	20	2	0.50	0.50	0.00	0.00	0.00
......................CGTATACTGAATTTATCC..........................................................	18	2	0.50	0.00	0.00	0.00	0.50
...................AAACGTACACTGAATGTATCCT.........................................................	22	2	0.50	0.00	0.00	0.00	0.50
.....................ACGTATACTGAATGTATCCTGT.......................................................	22	2	0.50	0.50	0.00	0.00	0.00
.....................AAGTATACTGAATGTATACTGA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00
.....................ACGTATAATGAATGTATCATGA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00
.....................ACGTATACTCAATGTATCCTCA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00
.....................ACCTATACTGAATGTATTC..........................................................	19	2	0.50	0.00	0.00	0.00	0.50
.....................ACGTATACTGAATxTATCCTG........................................................	20	2	0.50	0.00	0.00	0.00	0.50
.......................................................CGGTATACCTTCAGTATAC........................	19	2	0.50	0.00	0.00	0.00	0.50
.....................ACGTATACTGAATGTACCCTGA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00
.....................ACATATACTGAATGTATCCTGG.......................................................	22	2	0.50	0.00	0.00	0.00	0.50
......................CGTATACTAAATGTATCCTGAC......................................................	22	2	0.50	0.00	0.00	0.00	0.50
...................AAACGTATACTGAATCTATCCT.........................................................	22	2	0.50	0.00	0.00	0.00	0.50
......................CGTATACTGAATGTATCCTGG.......................................................	21	2	0.50	0.00	0.00	0.00	0.50
......................CGTATACTGAATGTATCCTGATT.....................................................	23	2	0.50	0.50	0.00	0.00	0.00
.....................ACGTATACTGGATGTATCCTGG.......................................................	22	2	0.50	0.00	0.00	0.00	0.50
.....................ACGTATACTGAATGTATCCTCA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00
.....................ACGGATACTGAATGTATCCTGA.......................................................	22	2	0.50	0.00	0.50	0.00	0.00
......................CGTATACTGACTGTCTCCTGAG......................................................	22	2	0.50	0.50	0.00	0.00	0.00
.....................ACGTATACTGGATGTCTCCTGA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00
.....................ACGTATACTGAATGTATCCTGACA.....................................................	24	2	0.50	0.00	0.00	0.00	0.50
.....................ACGTATACTGAATGTTTACTG........................................................	21	2	0.50	0.50	0.00	0.00	0.00
.....................ACGTATACTGAATGTATACTGA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00
.......................................................CGGTATACCTTCAGTATACGTAA....................	23	2	0.50	0.50	0.00	0.00	0.00
.....................ACGTATACTGAATGTATCCTGAAT.....................................................	24	2	0.50	0.00	0.00	0.00	0.50
.....................ACGTATACTGAATGTATTCTGA.......................................................	22	2	0.50	0.00	0.00	0.00	0.50
.......................................................CGGCATACCTTCAGTATACGTAAC...................	24	2	0.50	0.50	0.00	0.00	0.00
.....................ACGTATACTGACTGTATCCTGA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00
.....................ACGTATACTGAACGTATCCTGA.......................................................	22	2	0.50	0.00	0.00	0.00	0.50
.....................ACGGATACTGAATGTATACTGA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00
.......................GTATACTGAATGTATCCTGA.......................................................	20	2	0.50	0.50	0.00	0.00	0.00
.....................ACGTATAATGAATGTTTCCTGA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00
.....................ACGTATACTGCATGTATCCTGT.......................................................	22	2	0.50	0.50	0.00	0.00	0.00
.....................GCGTATACTGAATGTATC...........................................................	18	2	0.50	0.00	0.00	0.00	0.50
.....................ACGxxTACTGAATGTATCCTGA.......................................................	20	2	0.50	0.00	0.00	0.00	0.50
.....................ACGTATACTGAATTTATCCGG........................................................	21	2	0.50	0.00	0.00	0.00	0.50
.......................................................CGGTATACCTTCAGTATACGTA.....................	22	2	0.50	0.50	0.00	0.00	0.00
.....................ACGTATACTGAATGCATCCTGA.......................................................	22	2	0.50	0.00	0.00	0.00	0.50
.....................AGGTATACTGAATGTATCCTGG.......................................................	22	2	0.50	0.00	0.00	0.00	0.50
......................CGTATACTGAATTTATCCTGAA......................................................	22	2	0.50	0.00	0.00	0.00	0.50
.....................ACGTATACCGAATGTATCCTGA.......................................................	22	2	0.50	0.00	0.00	0.00	0.50
.....................ACGTATACTGAATGTAACCTGA.......................................................	22	2	0.50	0.00	0.00	0.00	0.50
.....................ACGTATACTGAATGTATTCTG........................................................	21	2	0.50	0.50	0.00	0.00	0.00
........................TATACTGAATGTATCCTGAAA.....................................................	21	2	0.50	0.50	0.00	0.00	0.00
.......................................................CGGTATACCTTCAGTATCCGTAA....................	23	2	0.50	0.50	0.00	0.00	0.00
.....................ACGTATACTGAATGGATCCTGC.......................................................	22	2	0.50	0.50	0.00	0.00	0.00
.....................ACGTATACTGAATGAATCCTGG.......................................................	22	2	0.50	0.00	0.00	0.00	0.50
.....................ACGTATACTGAATTTATCCTGT.......................................................	22	2	0.50	0.00	0.00	0.00	0.50
.....................ACGTATACTGAATGTATCCTTA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00
.....................ACGTATACTGAATGTATCCCGA.......................................................	22	2	0.50	0.00	0.00	0.00	0.50
.....................ACGTATACTGAATGTATCTTGA.......................................................	22	2	0.50	0.00	0.00	0.00	0.50
.....................ACGGATACTGAATGTATCCTG........................................................	21	2	0.50	0.00	0.00	0.00	0.50
.....................ACGTATACTGAATxTATCC..........................................................	18	2	0.50	0.00	0.00	0.00	0.50

droSec1

CGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGATAGCACGAGCAAC	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
.....................ACGTATACTGAATGTATCCTGA.......................................................	22	2	240.50	1.50	238.50	0.50
.....................ACGTATACTGAATGTATCCTG........................................................	21	2	12.00	0.50	11.50	0.00
.....................ACGTATATTGAATGTATCCTGA.......................................................	22	2	5.50	0.00	5.50	0.00
.....................ACGTGTACTGAATGTATCCTGA.......................................................	22	2	3.50	0.00	3.50	0.00
.....................ACGTATACTGAATGTATCCT.........................................................	20	2	3.50	0.50	3.00	0.00
.....................ACGTTTACTGAATGTATCCTGA.......................................................	22	2	3.50	0.00	3.50	0.00
.....................ACGTATTCTGAATGTATCCTGA.......................................................	22	2	3.00	0.00	3.00	0.00
.....................ACGTATACTGAATGTATCCTGAT......................................................	23	2	3.00	0.00	3.00	0.00
......................CGTATACTGAATGTATCCTGAT......................................................	22	2	3.00	0.00	3.00	0.00
......................CGTATACTGAATGTATCCTGA.......................................................	21	2	2.50	0.00	2.50	0.00
.......................................................CGGTATACCTTCAGTATACGT......................	21	2	2.50	0.00	2.50	0.00
.....................ACGTACACTGAATGTATCCTGA.......................................................	22	2	2.00	0.00	2.00	0.00
..........................................................TATACCTTCAGTATACGTAACA..................	22	2	1.50	0.50	1.00	0.00
.....................ACGTATACTGAATGTATCC..........................................................	19	2	1.50	0.00	1.50	0.00
.....................ACGTATACTGAATGTATC...........................................................	18	2	1.50	0.00	1.50	0.00
.....................ACGTATACTGAATCTATCCTGA.......................................................	22	2	1.50	0.00	1.50	0.00
...................AAACGTATACTGAATGTATCCT.........................................................	22	2	1.00	0.00	1.00	0.00
.....................ACGTxTACTGAATGTATCCTGA.......................................................	21	2	1.00	0.00	1.00	0.00
.....................ACGTATACTGAAxxTATCCTGA.......................................................	20	2	1.00	0.00	1.00	0.00
.....................ACGTATACTGAATGTATCCTGAAG.....................................................	24	2	0.50	0.00	0.50	0.00
.....................ACGTATATTGAATGTATC...........................................................	18	2	0.50	0.00	0.50	0.00
...................AAACGTATACTGAATGTATCCTGT.......................................................	24	2	0.50	0.00	0.50	0.00
.....................GCGTATACTGAATGTATCCTGA.......................................................	22	2	0.50	0.00	0.50	0.00
......................CGTATACTGAATGTATCCTGAGT.....................................................	23	2	0.50	0.00	0.50	0.00
.....................ACGTATACTGAATGTATCCTGT.......................................................	22	2	0.50	0.00	0.50	0.00
.....................ATGTATACTGAATGTATCCTGA.......................................................	22	2	0.50	0.00	0.50	0.00
.....................ACGTATACTGAATGTATCCTGAG......................................................	23	2	0.50	0.00	0.50	0.00
.....................ACCTATACTGAATGTATCCTGA.......................................................	22	2	0.50	0.00	0.50	0.00
......................ACTATACTGAATGTATCCTGA.......................................................	21	2	0.50	0.00	0.50	0.00
.....................ACGTATCCTGAATGTATCCTGA.......................................................	22	2	0.50	0.00	0.50	0.00
.....................ACGTATAxTGAATGTATCCTGA.......................................................	21	2	0.50	0.00	0.50	0.00
.........................ATACTGAATGTATCCTGA.......................................................	18	2	0.50	0.00	0.50	0.00
.....................ACGTATACTGAATGTACCCTGA.......................................................	22	2	0.50	0.00	0.50	0.00
.....................ACGTACACTGAATGTATCCTG........................................................	21	2	0.50	0.50	0.00	0.00
..........................................................TATACCTTCAGTATACGTAAC...................	21	2	0.50	0.00	0.50	0.00
......................CGTATACTGAATGTATCCTGATT.....................................................	23	2	0.50	0.00	0.50	0.00
.....................ACGTATACTGAATGTATCCTCA.......................................................	22	2	0.50	0.00	0.50	0.00
......................CGTATACTGAATGTATCCTGAAT.....................................................	23	2	0.50	0.00	0.50	0.00
.....................ACGTATATTGAATGCATCCTGA.......................................................	22	2	0.50	0.00	0.50	0.00
...........................................................ATACCTTCAGTATACGTAACA..................	21	2	0.50	0.00	0.50	0.00
.....................ACGTATACTGCATGTCTCCTGA.......................................................	22	2	0.50	0.00	0.50	0.00
.....................ACGTATATTGAATGTATCCTG........................................................	21	2	0.50	0.00	0.50	0.00
........................TATATTGAATGTATCCTGA.......................................................	19	2	0.50	0.00	0.50	0.00
.......................................................CGGTATACCTTCAGTATACG.......................	20	2	0.50	0.00	0.50	0.00
.......................................................CGGTATACCTTCAGTATACGTAAC...................	24	2	0.50	0.00	0.50	0.00
........................TATACTGAATGTATCCTGA.......................................................	19	2	0.50	0.00	0.50	0.00
.....................ACGTATACTGAATGTATCCTGAAT.....................................................	24	2	0.50	0.00	0.50	0.00
.....................ACGTATACTGAATGTATTCTGA.......................................................	22	2	0.50	0.00	0.50	0.00
.....................ACGTATACTGCATGTATCCTGA.......................................................	22	2	0.50	0.00	0.50	0.00
......................CGTATACTAAATGTATCCTGAA......................................................	22	2	0.50	0.00	0.50	0.00
.....................ACGTATACCGAATGTATCCTGT.......................................................	22	2	0.50	0.00	0.50	0.00
.......................GTATACTGAATGTATCCTGA.......................................................	20	2	0.50	0.00	0.50	0.00
.......GTGCGACCTCGTAAACGTA........................................................................	19	2	0.50	0.00	0.50	0.00
.....................ACGTATACTGAATTTATCCTGA.......................................................	22	2	0.50	0.00	0.50	0.00
....................CACGTTTACTGAATGTATCCTGA.......................................................	23	2	0.50	0.00	0.50	0.00
.......................................................CGGTATACCTTCAGTATACGTA.....................	22	2	0.50	0.00	0.50	0.00
......................CGTGTACTGAATGTATCCTGA.......................................................	21	2	0.50	0.00	0.50	0.00
.....................ACGTCTACTGAATGTATCCTGA.......................................................	22	2	0.50	0.00	0.50	0.00
...................AAACGTATACTGAACGTATCCTGT.......................................................	24	2	0.50	0.00	0.50	0.00
.....................ACGTATACCGAATGTATCCTGA.......................................................	22	2	0.50	0.00	0.50	0.00
.....................ACGTGTACTGAATGTATCC..........................................................	19	2	0.50	0.00	0.50	0.00
.....................ACGTATACTAAATGTATCCTGA.......................................................	22	2	0.50	0.00	0.50	0.00
.....................ACGTATACTGTATGTGTCCTGA.......................................................	22	2	0.50	0.00	0.50	0.00
.....................ACGTATACTGAATGTATCTTGA.......................................................	22	2	0.50	0.00	0.50	0.00
.....................ACGTATACTGAATGTATCAT.........................................................	20	2	0.50	0.50	0.00	0.00
......................CGTATACTGAATGTATCCTGAG......................................................	22	2	0.50	0.00	0.50	0.00
.....................ACGTGTACTGAATGTATCCT.........................................................	20	2	0.50	0.00	0.50	0.00

droYak2

CGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGAAAGCACGAGCAAC	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.....................ACGTATACTGAATGTATCCTGA.......................................................	22	2	66.00	65.00	0.00	0.00	0.00	1.00
.....................ACGTATACTGAATGTATCCTG........................................................	21	2	7.00	6.50	0.00	0.00	0.50	0.00
......................CGTATACTGAATGTATCCTGAT......................................................	22	2	3.00	3.00	0.00	0.00	0.00	0.00
.....................ACGTATACTGAATGTATCCTGG.......................................................	22	2	1.00	0.00	0.00	0.00	0.00	1.00
.....................ACGTATACTGAATGTATCCT.........................................................	20	2	1.00	1.00	0.00	0.00	0.00	0.00
.......................................................CGGTATACCTTCAGTATACGT......................	21	2	1.00	1.00	0.00	0.00	0.00	0.00
.....................ACGTATACTGAATGTATCCTTA.......................................................	22	2	1.00	1.00	0.00	0.00	0.00	0.00
.....................ACGTATACTGAATGTATCCTGAT......................................................	23	2	1.00	1.00	0.00	0.00	0.00	0.00
.....................ACGTATACTGCATGTATCCTGA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00	0.00
.....................ACGTATACTGACTGTATCCTGA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00	0.00
......................CGTATACTGAATGTATCCTG........................................................	20	2	0.50	0.50	0.00	0.00	0.00	0.00
.....................ACGTATACTGAATGTATCATGA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00	0.00
...................AAACGTATACTGAATGTATCCT.........................................................	22	2	0.50	0.50	0.00	0.00	0.00	0.00
.....................ACGTATACTCAATGTATCCTGA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00	0.00
......................CGTATACTGAATGTATCCTGA.......................................................	21	2	0.50	0.50	0.00	0.00	0.00	0.00
.....................AAGTATACTGAATGTATCCTGA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00	0.00
......................CGTATACTGAATGTATCCTGAA......................................................	22	2	0.50	0.50	0.00	0.00	0.00	0.00
.....................ACGTATACTGAATTTATCCTGA.......................................................	22	2	0.50	0.00	0.00	0.00	0.00	0.50
.....................ACGTATACTGAATGTATCCTGAC......................................................	23	2	0.50	0.50	0.00	0.00	0.00	0.00
.....................ACGTGTACTGAATGTATCCTGA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00	0.00
.....................ACGGATATTGAATGTATCCTGA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00	0.00
.......................................................CGGTATACCTTCAGTATACGTA.....................	22	2	0.50	0.50	0.00	0.00	0.00	0.00
.....................AAGTATACTGATTGTATCCTGA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00	0.00
.....................ACGTATACTGTATGTATCCT.........................................................	20	2	0.50	0.50	0.00	0.00	0.00	0.00
.....................ACGTATACTGAATGTATC...........................................................	18	2	0.50	0.50	0.00	0.00	0.00	0.00
.....................ACGTATACTGAATGTATCCTGAGT.....................................................	24	2	0.50	0.50	0.00	0.00	0.00	0.00
.....................ACGTATACTGAATGTATCCTAA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00	0.00
.....................ACGTATACTGAATGTAACCTGA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00	0.00
..........................................................TATACCTTCAGTATACGTAAC...................	21	2	0.50	0.50	0.00	0.00	0.00	0.00
.....................ACGTATACTGAGTGTATCCTGA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00	0.00
.....................ACGTATACTGCATGTATCTTGA.......................................................	22	2	0.50	0.00	0.00	0.00	0.50	0.00
.....................ACGTTTACTGAATGTATCCTGAT......................................................	23	2	0.50	0.50	0.00	0.00	0.00	0.00
..........................................................TATACCTTCAGTATACGTAACA..................	22	2	0.50	0.50	0.00	0.00	0.00	0.00
.....................ACGCATACTGAATGTATCCTGA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00	0.00
.....................ACGCATACTGAATATATCCTG........................................................	21	2	0.50	0.50	0.00	0.00	0.00	0.00

droEre2

CGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGAAAGCACGAGCAAC	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.....................ACGTATACTGAATGTATCCTGA.......................................................	22	2	48.50	38.50	0.00	9.00	1.00
.....................ACGTATACTGAATGTATCCTG........................................................	21	2	5.00	4.00	0.00	0.50	0.50
.....................ACGTATACTGAATGTATCCTTA.......................................................	22	2	3.50	3.50	0.00	0.00	0.00
.....................ACGTATACTGAATGTATCCT.........................................................	20	2	2.00	1.00	0.00	0.50	0.50
.....................ACGTATACTGCATGTATCCTGA.......................................................	22	2	1.00	1.00	0.00	0.00	0.00
...................AAACGTATACTGAATGTATCCT.........................................................	22	2	1.00	1.00	0.00	0.00	0.00
.....................ACGTATACTGAATGTATCCTGATT.....................................................	24	2	1.00	0.50	0.00	0.50	0.00
..........................................................TATACCTTCAGTATACGTAACA..................	22	2	1.00	1.00	0.00	0.00	0.00
.....................ACGTATACTGAATGTATTCTGA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00
...................AAACGTATACTGAATGTATCCTC........................................................	23	2	0.50	0.50	0.00	0.00	0.00
.....................ACGTAAACTGAATGTATCCTG........................................................	21	2	0.50	0.50	0.00	0.00	0.00
.....................ACGCATACTGAATGGATCCTGA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00
.....................ACGTATACTGAATTTATCCTTA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00
.....................ACGTATACTCAATGTATCCTT........................................................	21	2	0.50	0.50	0.00	0.00	0.00
......................CGTATACTGAATGTATCCTGA.......................................................	21	2	0.50	0.50	0.00	0.00	0.00
........................TATACTTAATGTATCCTGACT.....................................................	21	2	0.50	0.50	0.00	0.00	0.00
.....................AAGTATACTGAATGTATCCTGA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00
.....................ACTTATACTGAATGTATCCTGA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00
.....................ACGTATACTGAATGTATCCTGG.......................................................	22	2	0.50	0.50	0.00	0.00	0.00
.....................ACGTATACTGAATGTATCCTT........................................................	21	2	0.50	0.50	0.00	0.00	0.00
.....................ACCTATACTGAATGTATCATGA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00
.....................ACGTATACTGAATGTGTCCTGA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00
.....................ACGTATACTAAATGTATCCTCA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00
.....................ACGTATAGTGAATGTATCCTGA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00
.....................ACCTATACTGAATGTATCCTTA.......................................................	22	2	0.50	0.00	0.00	0.50	0.00
.....................ACGTATACTGCATGTATCCTCA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00
.....................ACGTATACTGCATGTATCCTTA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00
.....................ACGTATACTGAATGCATCCCGA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00
.....................ACGTATACTGAATGCATCCTGA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00
.....................ACGTATACCGAATGTATCCTGA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00
.....................ACGTATACTGAATGGATCCTGA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00
.....................ACGTATACTGAATCTATCCTGA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00
.....................ACGTATACTGAGTGTATCCTGA.......................................................	22	2	0.50	0.00	0.00	0.00	0.50
.....................ACGTATACTTAATGTATCCTTA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00
.......................................................CGGTATACCTTCAGTATACGT......................	21	2	0.50	0.50	0.00	0.00	0.00
.....................ACGTATACTGCATGTATCTTGA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00
.....................ACGGATACTGAATGTATCCTGA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00
.....................ACGCATACTGAATGTATCCTGC.......................................................	22	2	0.50	0.50	0.00	0.00	0.00
.....................ACGTATACTGAATGTATTTTGA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00
.....................ACGTATACTGAATGTATCCCGA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00
.....................ACGTATACTGAATGTATCTTGA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00
.....................ACGCATACTGAATGTATCCTGA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00
.....................ACGGATACTGAATGTATCCTCA.......................................................	22	2	0.50	0.50	0.00	0.00	0.00

droAna3

TGATTTTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGTAACACCTTCAAC	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
.....................ACGTATACTGAATGTATCCTGA.......................................................	22	2	8.50	0.50	0.00	1.00	7.00
.....................ACGTATACTGAATGTATCCTG........................................................	21	2	2.50	0.00	1.00	0.00	1.50
.....................ACGTATACTGAATGTATCCT.........................................................	20	2	1.00	0.00	0.50	0.00	0.50
...................TTACGTATACTGAATGTAT............................................................	19	4	0.50	0.50	0.00	0.00	0.00
.....................ACGTATACTGAATTTATCCTGAC......................................................	23	2	0.50	0.00	0.00	0.00	0.50
...........................ACTGAATGTATGCTAAGT.....................................................	18	2	0.50	0.00	0.00	0.50	0.00
.....................ACGTATACTGCATCTATCCTGA.......................................................	22	2	0.50	0.00	0.00	0.00	0.50
.....................ACGTATACTGAATGTATCCTGT.......................................................	22	2	0.50	0.00	0.00	0.50	0.00
.....................ACGTATACTGAATGAATCCTGA.......................................................	22	2	0.50	0.00	0.00	0.50	0.00
.....................ACGTATACTGAATGTATCCTTA.......................................................	22	2	0.50	0.00	0.00	0.00	0.50
..........................................................................GTAACACGTGGTAAxACCTTC...	20	2	0.50	0.50	0.00	0.00	0.00
..........................................................TATACCTTCAGTATACGTAACA..................	22	2	0.50	0.00	0.00	0.00	0.50
...................TTACGTATACTGAAAGTAT............................................................	19	4	0.25	0.25	0.00	0.00	0.00
.......................................................CGGTATACCTTCAGTATACGTA.....................	22	2	0.50	0.00	0.00	0.00	0.50

dp4

TGAACCTGTGCGACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCAAC	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
.....................ACGTATACTGAATGTATCCTGA.......................................................	22	2	128.00	0.00	125.00	2.50	0.50
.....................ACGTATACTGAATGTATCCTG........................................................	21	2	8.50	0.50	7.00	0.50	0.50
.....................ACGTATACTGAATGTATCCT.........................................................	20	2	4.00	0.00	4.00	0.00	0.00
.....................ACGTATACTGAATGTATCCTGT.......................................................	22	2	2.50	0.00	2.50	0.00	0.00
..........................................................TATACCTTCAGTATACGTAACA..................	22	2	2.50	0.00	2.50	0.00	0.00
......................CGTATACTGAATGTATCCTGAT......................................................	22	2	2.50	0.00	2.50	0.00	0.00
......................CGTATACTGAATGTATCCTGA.......................................................	21	2	1.50	0.00	1.50	0.00	0.00
.....................ACGTATACTGCATGTATCCTGA.......................................................	22	2	1.50	0.00	1.50	0.00	0.00
.....................ACGTATACTGAATGTATCCTGG.......................................................	22	2	1.50	0.00	1.50	0.00	0.00
......................CGTATACTGAATGTATCCTGAA......................................................	22	2	1.00	0.00	1.00	0.00	0.00
.....................ACGTATACTGAGTGTATCCTGA.......................................................	22	2	1.00	0.00	1.00	0.00	0.00
.....................ACGTATACTGAATGTATC...........................................................	18	2	1.00	0.00	1.00	0.00	0.00
.....................ACGTATACTGAATGTATCCTTA.......................................................	22	2	1.00	0.00	1.00	0.00	0.00
.....................ACGTATACTGAATGTATCCCGA.......................................................	22	2	1.00	0.00	1.00	0.00	0.00
.....................ACGTATACTGAATGTATGCTGA.......................................................	22	2	0.50	0.00	0.50	0.00	0.00
.....................ACGTATAATGAATGTATCCTGA.......................................................	22	2	0.50	0.00	0.50	0.00	0.00
.....................ACGTATACTGAATGTATCATGA.......................................................	22	2	0.50	0.00	0.50	0.00	0.00
.....................ACGTATACTGAATGTATCCTGATT.....................................................	24	2	0.50	0.00	0.50	0.00	0.00
.....................ACGTATATTGAATGTATCCTCA.......................................................	22	2	0.50	0.00	0.50	0.00	0.00
.....................ACGTATACTCAATGTATCCTGA.......................................................	22	2	0.50	0.00	0.50	0.00	0.00
.....................ACGTATACTGCATGTATCCTG........................................................	21	2	0.50	0.00	0.50	0.00	0.00
.....................ACGGATTCTGAATGTATCCTGA.......................................................	22	2	0.50	0.00	0.50	0.00	0.00
.....................AAGTATACTGAATGTATACTGA.......................................................	22	2	0.50	0.00	0.50	0.00	0.00
..........................................................TATACCTTCAGTATACGTAAC...................	21	2	0.50	0.00	0.50	0.00	0.00
.....................ACGTAGACTGCATGTATCCTGA.......................................................	22	2	0.50	0.00	0.50	0.00	0.00
......................CGTATACTGAATGTATCCTGATT.....................................................	23	2	0.50	0.00	0.50	0.00	0.00
.....................ACGGATACTGAATGTATCCTGA.......................................................	22	2	0.50	0.00	0.50	0.00	0.00
.......................................................CGGTATACCTTCCGTATACGTCAC...................	24	2	0.50	0.00	0.50	0.00	0.00
.....................ACGTATACTGCATGTCTCCTGA.......................................................	22	2	0.50	0.00	0.50	0.00	0.00
.....................ACGTATACTGTATGTATCCTGA.......................................................	22	2	0.50	0.00	0.50	0.00	0.00
.......................................................CGGTATACCTTCAGTATACGTAA....................	23	2	0.50	0.00	0.50	0.00	0.00
.....................ACGCATACTGAATGTATCCTGA.......................................................	22	2	0.50	0.00	0.50	0.00	0.00
.......................................................CGGTATACCTTCAGTATACGTAAC...................	24	2	0.50	0.00	0.50	0.00	0.00
.......................................................CGGTATACCTTCAGTATACG.......................	20	2	0.50	0.00	0.50	0.00	0.00
.....................ACGTATACTGAATGTATCCTGAT......................................................	23	2	0.50	0.00	0.50	0.00	0.00
........................TATACTGAATGTATCCTGA.......................................................	19	2	0.50	0.00	0.50	0.00	0.00
.....................ACGTATACTGAATGTATCC..........................................................	19	2	0.50	0.00	0.50	0.00	0.00
.....................ACGTATACTGACTGTATCCTG........................................................	21	2	0.50	0.00	0.50	0.00	0.00
.....................ACGTATACTGTATGTATCCTTA.......................................................	22	2	0.50	0.00	0.50	0.00	0.00
.....................ACGTATACTGAATGTATGCTGT.......................................................	22	2	0.50	0.00	0.50	0.00	0.00
.....................ACGTATAGTGAATGTTTCCTGA.......................................................	22	2	0.50	0.00	0.50	0.00	0.00
.....................ACGGAGACTGAATGTATCCT.........................................................	20	2	0.50	0.00	0.50	0.00	0.00
.....................ACGGATACTGAATGTATTCTGA.......................................................	22	2	0.50	0.00	0.50	0.00	0.00
.....................ACGTATACTGAATGTTTACT.........................................................	20	2	0.50	0.00	0.50	0.00	0.00
.....................ACGTAGACTGAATGTATCCTGA.......................................................	22	2	0.50	0.00	0.00	0.50	0.00
.....................ACGTATACTGAATGTATTCTTA.......................................................	22	2	0.50	0.00	0.50	0.00	0.00
.....................ACGTATACTGTATGTATCCTGG.......................................................	22	2	0.50	0.00	0.50	0.00	0.00
........................TATGCTGAATGTATCCTGA.......................................................	19	2	0.50	0.00	0.50	0.00	0.00
..........................................................TATACCTTCAGTATACGTCACT..................	22	2	0.50	0.00	0.50	0.00	0.00
.....................AGGTATACTGAATGTATCCTGA.......................................................	22	2	0.50	0.00	0.50	0.00	0.00
.....................ACGTATACTGAATGTATCCTGAA......................................................	23	2	0.50	0.00	0.50	0.00	0.00
.....................ACGTATACTGAATGGATCCTGA.......................................................	22	2	0.50	0.00	0.50	0.00	0.00
.....................ACGTATACTGAATGTATCCTAA.......................................................	22	2	0.50	0.00	0.50	0.00	0.00
.....................AAGTATACTGAATGTATCCTTA.......................................................	22	2	0.50	0.00	0.50	0.00	0.00
.......................................................CGGTATACCTTCAGTATACGT......................	21	2	0.50	0.50	0.00	0.00	0.00
.....................ACGCTTACTGAATGTATCCTGA.......................................................	22	2	0.50	0.00	0.50	0.00	0.00
.....................ACGGATACTGAATGTAGCCTGA.......................................................	22	2	0.50	0.00	0.50	0.00	0.00
.....................ACGTATACTGAATATATCCTGA.......................................................	22	2	0.50	0.00	0.50	0.00	0.00
.....................ACGGATACTGAATGTATCCTG........................................................	21	2	0.50	0.00	0.50	0.00	0.00

droPer1

TGAACCTGTGCGACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCAAC	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.....................ACGTATACTGAATGTATCCTGA.......................................................	22	2	69.00	0.00	23.00	0.00	0.50	45.50
.....................ACGTATACTGAATGTATCCTG........................................................	21	2	12.00	0.00	2.50	0.50	0.00	9.00
.....................ACGTATACTGAATGTATCCTGG.......................................................	22	2	4.00	0.00	0.00	0.00	0.00	4.00
.....................ACGTATACTGAATGTATCC..........................................................	19	2	3.00	0.00	0.50	0.00	0.00	2.50
......................CGTATACTGAATGTATCCTGAT......................................................	22	2	2.50	0.00	0.00	0.00	0.00	2.50
.....................ACGTATACTGAATTTATCCTGA.......................................................	22	2	1.50	0.00	0.00	0.00	0.00	1.50
.....................ACGTATACTGAATxTATCCT.........................................................	19	2	1.50	0.50	0.00	0.00	0.00	1.00
......................CGTATACTGAATGTATCCTGA.......................................................	21	2	1.00	0.00	0.00	0.00	0.00	1.00
.....................ACGTATACTGAATGTATCCTGT.......................................................	22	2	1.00	0.00	0.00	0.00	0.00	1.00
.GAACCTGTACGACTTCCT...............................................................................	18	2	1.00	0.00	0.00	0.00	0.00	1.00
.....................ACGTATACTGAATGTATCCT.........................................................	20	2	1.00	0.00	1.00	0.00	0.00	0.00
.....................ACGTATACTGAATGTATCCTGAA......................................................	23	2	1.00	0.00	0.50	0.00	0.00	0.50
.....................ACGTATACTGAATCTATCCTGA.......................................................	22	2	1.00	0.00	0.00	0.00	0.00	1.00
......................CGTATACTGAATGTATCCTGG.......................................................	21	2	1.00	0.00	0.00	0.00	0.00	1.00
.....................ACGTATACTGAATGTATCCCGA.......................................................	22	2	1.00	0.00	0.00	0.00	0.00	1.00
.....................ACGTATAATGAATGTATCCTCA.......................................................	22	2	0.50	0.00	0.50	0.00	0.00	0.00
.....................ACGTATACTGACTGTATCCTGA.......................................................	22	2	0.50	0.00	0.50	0.00	0.00	0.00
.....................ACATATACTGAATGTATCCTGA.......................................................	22	2	0.50	0.00	0.00	0.50	0.00	0.00
.....................ACGTATACTGAAGGTATCCTGA.......................................................	22	2	0.50	0.00	0.00	0.00	0.00	0.50
....................TACGTATACTGAATGTATCCTG........................................................	22	2	0.50	0.00	0.00	0.00	0.00	0.50
...........................................................ATACCTTCAGTATACGTAAC...................	20	2	0.50	0.00	0.50	0.00	0.00	0.00
...................GTACGTATACTGAAGGTAT............................................................	19	4	0.25	0.25	0.00	0.00	0.00	0.00
....................TACGTATACTGAAGGGAT............................................................	18	4	0.25	0.25	0.00	0.00	0.00	0.00
.....................ACGTACACTGAATGTATCCTGA.......................................................	22	2	0.50	0.00	0.00	0.00	0.00	0.50
.....................ACGTATACTGCATGTATCCTGT.......................................................	22	2	0.50	0.00	0.50	0.00	0.00	0.00
.....................ACGTATGCTGAATGTATCCTGA.......................................................	22	2	0.50	0.00	0.50	0.00	0.00	0.00
..........................TACTGAATGTATCCTGAAA.....................................................	19	2	0.50	0.00	0.00	0.00	0.00	0.50
.....................ACGTATACTGAATTTATCCTGG.......................................................	22	2	0.50	0.00	0.00	0.00	0.00	0.50
.....................ACGTATACTGACTGTATCC..........................................................	19	2	0.50	0.00	0.50	0.00	0.00	0.00
...................ATACGTATACTGAAGGTAT............................................................	19	4	0.25	0.25	0.00	0.00	0.00	0.00
.....................ACGTATACTGAATGTATC...........................................................	18	2	0.50	0.00	0.00	0.00	0.00	0.50
.....................ACGTATACTGAATxTATCCTGA.......................................................	21	2	0.50	0.00	0.00	0.00	0.00	0.50
.....................ACGAATACTGAATGTATCCTTA.......................................................	22	2	0.50	0.00	0.50	0.00	0.00	0.00
.....................ACGTATACTGAATGTATCCTCA.......................................................	22	2	0.50	0.00	0.50	0.00	0.00	0.00
.....................ACGTATACTGAAAGTATCCTGA.......................................................	22	2	0.50	0.00	0.00	0.00	0.00	0.50
.....................ACGTATACTTAATTTATCCTGA.......................................................	22	2	0.50	0.00	0.50	0.00	0.00	0.00

droWil1

TGAATCTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATGCTATCCGGTATACCTTCAGTATACGTAACACGATGAAACACCAACAAC	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.....................ACGTATACTGAATGTATCCTGA.......................................................	22	2	167.50	0.00	166.50	0.50	0.50
.....................ACGTATACTGAATGTATCCTG........................................................	21	2	24.50	0.00	23.50	0.00	1.00
..........................................................TATACCTTCAGTATACGTAACA..................	22	2	7.50	0.00	7.50	0.00	0.00
.....................ACGTATACTGAATGTATCCT.........................................................	20	2	7.50	0.00	7.00	0.50	0.00
......................CGTATACTGAATGTATCCTGA.......................................................	21	2	3.00	0.50	2.50	0.00	0.00
.......................................................CGGTATACCTTCAGTATACGT......................	21	2	3.00	0.00	3.00	0.00	0.00
.....................ACGTATACTGAATGTATCCTGT.......................................................	22	2	2.50	0.00	2.50	0.00	0.00
..........................................................TATACCTTCAGTATACGTAACT..................	22	2	1.50	0.00	1.50	0.00	0.00
.....................ACGTATACTGAATGTATCCTGAG......................................................	23	2	1.00	0.00	1.00	0.00	0.00
.....................ACGTGTACTGAATGTATCCTGA.......................................................	22	2	1.00	0.00	1.00	0.00	0.00
........................TATACTGAATGTATCCTGAGTG....................................................	22	2	1.00	0.00	1.00	0.00	0.00
..........................................................TATACCTTCAGTATACGTAAC...................	21	2	1.00	0.00	1.00	0.00	0.00
.......................................................CGGTATACCTTCAGTATACGTAA....................	23	2	1.00	0.00	1.00	0.00	0.00
.....................ACGTATACTGACTGTATCCTGA.......................................................	22	2	1.00	0.00	1.00	0.00	0.00
.....................ACGTATACTGAACGTATCCTGA.......................................................	22	2	1.00	0.00	1.00	0.00	0.00
.......................GTATACTGAATGTATCCTGA.......................................................	20	2	1.00	0.00	0.50	0.00	0.50
.....................ACGTATACTGAATTTATCCTGA.......................................................	22	2	1.00	0.00	0.50	0.00	0.50
.....................ACGTATACTGAATGTATCCTGAGTGT...................................................	26	2	1.00	0.00	1.00	0.00	0.00
.....................ACGTATACTGAAxxTATCCTGA.......................................................	20	2	1.00	0.00	1.00	0.00	0.00
....................TACGTATACTGAATGTATCCT.........................................................	21	2	1.00	0.00	1.00	0.00	0.00
......................CGTATACTGAATGTATCCTGACT.....................................................	23	2	1.00	0.00	0.00	0.00	1.00
.....................ACGTATACTGAATTTATCCT.........................................................	20	2	1.00	0.00	0.00	0.00	1.00
.....................ACGTATACTGAATCTATCCTGA.......................................................	22	2	1.00	0.00	0.50	0.00	0.50
.....................ACGTATACTGAATGTATCGTG........................................................	21	2	0.50	0.00	0.50	0.00	0.00
.....................ACATATACTGAATGTATCCTGA.......................................................	22	2	0.50	0.00	0.50	0.00	0.00
.....................ACGTATACTGAATGTATCCTGATT.....................................................	24	2	0.50	0.00	0.50	0.00	0.00
.....................ACGTATACTCAATGTATCCTGA.......................................................	22	2	0.50	0.00	0.50	0.00	0.00
.....................GCGTATACTGAATGTATCCTGA.......................................................	22	2	0.50	0.00	0.50	0.00	0.00
..........................................................TATACCTTCAGTATAAGTAA....................	20	2	0.50	0.00	0.50	0.00	0.00
......................CGTATACTGAATGTATCCTGAA......................................................	22	2	0.50	0.00	0.50	0.00	0.00
.....................ACGxxTACTGAATGTATCCTG........................................................	19	2	0.50	0.00	0.50	0.00	0.00
......................ACTATACTGAATGTATCCTGA.......................................................	21	2	0.50	0.00	0.50	0.00	0.00
.....................ACGTATACTGAAATTATCCT.........................................................	20	2	0.50	0.00	0.00	0.00	0.50
.....................ACGTATxxTGAATGTATCCTGA.......................................................	20	2	0.50	0.00	0.00	0.50	0.00
....................TACGTATATTGAATGTATCCTG........................................................	22	2	0.50	0.00	0.50	0.00	0.00
.....................ACGTATxCTGAATGTATCCTGA.......................................................	21	2	0.50	0.00	0.50	0.00	0.00
.....................ACGCATACTGAATGTATCCT.........................................................	20	2	0.50	0.00	0.50	0.00	0.00
.....................ACGTATACTGAGTGTATCCTGA.......................................................	22	2	0.50	0.00	0.50	0.00	0.00
......................CGTATACTGAATGTATCCTGATT.....................................................	23	2	0.50	0.00	0.50	0.00	0.00
.....................ACGTATACTGAATGTATACTGA.......................................................	22	2	0.50	0.00	0.50	0.00	0.00
.....................ACGCATACTGAATGTATCCTGA.......................................................	22	2	0.50	0.00	0.50	0.00	0.00
.......................................................CGGTATACCTTCAGTATACG.......................	20	2	0.50	0.00	0.50	0.00	0.00
.....................ACGTATACTGAATGTATCC..........................................................	19	2	0.50	0.00	0.50	0.00	0.00
.....................ACGTATACTGACTGTATCCTG........................................................	21	2	0.50	0.00	0.50	0.00	0.00
.....................ACGTATACTTAATGTATCCTGA.......................................................	22	2	0.50	0.00	0.50	0.00	0.00
..........................................................TATACCTTCAGTATACGTAA....................	20	2	0.50	0.00	0.50	0.00	0.00
.....................ACGTATACTGAATGTATCCTT........................................................	21	2	0.50	0.00	0.50	0.00	0.00
.....................ACGxxTACTGAATGTATCCTGA.......................................................	20	2	0.50	0.00	0.50	0.00	0.00
.....................ACGTATACTGAATGTATCCTC........................................................	21	2	0.50	0.00	0.50	0.00	0.00
.......................................................CGGTATACCTTCAGTATACGTA.....................	22	2	0.50	0.00	0.50	0.00	0.00
.....................ACGTATACTGAATGCATCCTGA.......................................................	22	2	0.50	0.00	0.00	0.50	0.00
.....................ACGTATAATGAATGTATCCTG........................................................	21	2	0.50	0.00	0.50	0.00	0.00
.....................ACGTATACTGAATGTATC...........................................................	18	2	0.50	0.00	0.50	0.00	0.00
.....................ACGTATACTGAATGTATCCTGAGT.....................................................	24	2	0.50	0.00	0.50	0.00	0.00
....................CACGTATACTGAATGTATCCTGA.......................................................	23	2	0.50	0.00	0.50	0.00	0.00
....................TACGTATACTGAATGTATC...........................................................	19	2	0.50	0.00	0.50	0.00	0.00
.....................ACGTATACTGAATGTATCCTTA.......................................................	22	2	0.50	0.00	0.50	0.00	0.00
.....................ACGTATACTGAATGTATCTTGA.......................................................	22	2	0.50	0.00	0.50	0.00	0.00
..................TATACGTATACTGAATGTATCC..........................................................	22	2	0.50	0.00	0.50	0.00	0.00
.....................ACGTATACTGAATGTATCCTGAGTG....................................................	25	2	0.50	0.00	0.50	0.00	0.00
.....................ACGTATACTGAATxCATCCTGA.......................................................	21	2	0.50	0.00	0.50	0.00	0.00

droVir3

AGAGCCTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCGAC	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.....................ACGTATACTGAATGTATCCTGA.......................................................	22	2	16.00	0.00	0.00	9.00	5.50	1.50
.....................ACGTATACTGAATGTATCCTG........................................................	21	2	3.50	0.00	0.00	0.50	2.50	0.50
.....................ACGTATACTGAATGTATCCTGG.......................................................	22	2	1.50	0.00	0.00	0.00	1.50	0.00
.....................ACGTATACTGAATGTATCC..........................................................	19	2	1.00	0.00	0.00	0.00	1.00	0.00
.....................ACGTATACTGAATGTATC...........................................................	18	2	1.00	0.00	0.00	0.00	0.50	0.50
...................TTACGTATACTGAAGGTATC...........................................................	20	4	0.25	0.25	0.00	0.00	0.00	0.00
.....................ACGTATACTGAATGTATCCT.........................................................	20	2	0.50	0.00	0.00	0.50	0.00	0.00
...................CTACGTATACTGAAGGTAT............................................................	19	4	0.25	0.25	0.00	0.00	0.00	0.00
.....................ACGTATACTGAATGTATCCTGATT.....................................................	24	2	0.50	0.00	0.00	0.50	0.00	0.00
......................CCTATACTGAATGTATCCTGACT.....................................................	23	2	0.50	0.00	0.00	0.00	0.50	0.00
......................CGTATACTGAATGTATCCTGAT......................................................	22	2	0.50	0.00	0.00	0.00	0.50	0.00
.....................GCGTATACTGAATGTATCCTGA.......................................................	22	2	0.50	0.00	0.00	0.00	0.50	0.00
.....................ACGTATACTGAATTTATCCTGA.......................................................	22	2	0.50	0.00	0.00	0.00	0.50	0.00
.......................GTATACTGAATGTATCCTGAAA.....................................................	22	2	0.50	0.00	0.00	0.00	0.50	0.00
.....................ACCTATACTGAATGTATCCTTA.......................................................	22	2	0.50	0.00	0.00	0.50	0.00	0.00

droMoj3

TGAGCCTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCAAC	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.....................ACGTATACTGAATGTATCCTGA.......................................................	22	2	99.00	0.00	0.50	0.00	98.50
.....................ACGTATACTGAATGTATCCTG........................................................	21	2	11.00	0.00	0.00	0.00	11.00
......................CGTATACTGAATGTATCCTGAT......................................................	22	2	4.00	0.00	0.00	0.00	4.00
.....................ACGTATACTGAATGTATCCT.........................................................	20	2	3.50	0.00	0.00	0.00	3.50
......................CGTATACTGAATGTATCCTGAA......................................................	22	2	2.00	0.00	0.00	0.00	2.00
..........................................................TATACCTTCAGTATACGTAACT..................	22	2	2.00	0.00	0.00	0.00	2.00
......................CGTATACTGAATGTATCCTGATT.....................................................	23	2	1.50	0.00	0.00	0.00	1.50
..........................................................TATACCTTCAGTATACGTAACA..................	22	2	1.50	0.00	0.00	0.00	1.50
.....................ACGTATACTGAATGTATCCTGAT......................................................	23	2	1.50	0.00	0.00	0.00	1.50
...................TTACGTATACTGAATGTAT............................................................	19	4	0.75	0.75	0.00	0.00	0.00
.......................................................CGGTATACCTTCAGTATACGT......................	21	2	1.50	0.00	0.00	0.00	1.50
..........................................................TATACCTTCAGTATACGTAAC...................	21	2	1.00	0.00	0.00	0.00	1.00
.....................ACGCATACTGAATGTATCCTGA.......................................................	22	2	1.00	0.00	0.00	0.00	1.00
......................CGTATACTGAATGTATCCTGAC......................................................	22	2	1.00	0.00	0.00	0.00	1.00
.......................................................CGGTATACCTTCAGTATACGTAAC...................	24	2	1.00	0.00	0.00	0.00	1.00
.....................AAGTATACTGAATGTATCCTGA.......................................................	22	2	1.00	0.00	0.00	0.00	1.00
......................CGTATACTGAATGTATCCTGTTT.....................................................	23	2	1.00	0.00	0.00	0.00	1.00
.....................ACATATACTGAATGTATCCTGA.......................................................	22	2	0.50	0.00	0.00	0.00	0.50
.....................ACGTATACTGAATGTATCCTGATT.....................................................	24	2	0.50	0.00	0.00	0.00	0.50
.....................ACGTATACTGCATGTATCCTG........................................................	21	2	0.50	0.00	0.00	0.00	0.50
......................CGTATACTGAATGTATCCTGA.......................................................	21	2	0.50	0.00	0.00	0.00	0.50
....................TACGTATACTGAATGTATCCTG........................................................	22	2	0.50	0.00	0.00	0.00	0.50
.....................ACGTATACTGAATGTATCCTGT.......................................................	22	2	0.50	0.00	0.00	0.00	0.50
.....................AAGTATACTGAATGTATACTGA.......................................................	22	2	0.50	0.00	0.00	0.00	0.50
.....................ACGTATACTCAATGTATCCTA........................................................	21	2	0.50	0.00	0.00	0.00	0.50
.....................ACGTATACTGAATGTCTCCTGC.......................................................	22	2	0.50	0.00	0.00	0.00	0.50
..........................................................TATACCTTCAGTATACGTAACAC.................	23	2	0.50	0.00	0.00	0.00	0.50
.....................ACGGATACTGAATGTTTCCTGA.......................................................	22	2	0.50	0.00	0.00	0.00	0.50
.....................ACGTATACTGAATGTACCCTGA.......................................................	22	2	0.50	0.00	0.00	0.00	0.50
.....................TCGTATACTGAATGTATCCTGA.......................................................	22	2	0.50	0.00	0.00	0.00	0.50
.....................ACGTATAATGAATGTATCGTGA.......................................................	22	2	0.50	0.00	0.00	0.00	0.50
.....................................................TCCGGTATACCTTCAGTATACG.......................	22	2	0.50	0.00	0.00	0.00	0.50
.....................ACGTATACTGCATGTCTCCTGA.......................................................	22	2	0.50	0.00	0.00	0.00	0.50
.......................GTATACTGAATGTCTCCTGA.......................................................	20	2	0.50	0.00	0.00	0.00	0.50
.....................AAGTATACTGAATGTATCCT.........................................................	20	2	0.50	0.50	0.00	0.00	0.00
.....................ACGTATACTGAATGTATCCTGAAT.....................................................	24	2	0.50	0.00	0.00	0.00	0.50
.....................ACGTATACTGAATGTATCCTGC.......................................................	22	2	0.50	0.00	0.00	0.00	0.50
.....................ACGTATACTGAATGTTTCCTTA.......................................................	22	2	0.50	0.00	0.00	0.00	0.50
.....................ACGTATACTGACTGTATCCTGA.......................................................	22	2	0.50	0.00	0.00	0.00	0.50
.......................GTATACTGAATGTATCCTGA.......................................................	20	2	0.50	0.00	0.00	0.00	0.50
.....................ACGTATACTGAATGTATCCTGG.......................................................	22	2	0.50	0.00	0.00	0.00	0.50
.....................ACGTATACTGAATTTATCCTGA.......................................................	22	2	0.50	0.00	0.00	0.00	0.50
.....................ACGTATGCTGAATGTATCCTGA.......................................................	22	2	0.50	0.00	0.00	0.00	0.50
.....................ACGTATACTGAATGTATCCTGACT.....................................................	24	2	0.50	0.00	0.00	0.00	0.50
.....................ACGTCTACTGAATGTATCCTGA.......................................................	22	2	0.50	0.00	0.00	0.00	0.50
.....................ACGTATATTGAATGTATCCTGA.......................................................	22	2	0.50	0.00	0.00	0.00	0.50
.....................ACGTATACTGAATGGATCCTGA.......................................................	22	2	0.50	0.00	0.00	0.00	0.50
.....................ACGTATACTGAATCTATCCTGA.......................................................	22	2	0.50	0.00	0.00	0.00	0.50
..........................................................TATAACTTCAGTATACGTAACA..................	22	2	0.50	0.00	0.00	0.00	0.50
.....................ACGTATACTAAATGTATCCTGA.......................................................	22	2	0.50	0.00	0.00	0.00	0.50
......................CGTATACTGAATGTATCCTGAG......................................................	22	2	0.50	0.00	0.00	0.00	0.50
......................CGTATACTGAATGTATCCTGCT......................................................	22	2	0.50	0.00	0.00	0.00	0.50

droGri2

AGAACCTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCAAC	Size	Hit Count	Total Norm	V109 Male body
...................TTACGTATACTGAAGGTATCC..........................................................	21	4	0.25	0.25

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image