dme-mir-983-1- 12- and 20-way alignments

dme-mir-983-1	chrX:4262342-4262432 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	antisense_to_intron

Legend:

   mature strand at position 4262394-4262415
   star strand at position 4262358-4262379
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chrX:4262327-4262447 -	ATATGCATATGCTATTATATTGCAATAATTAAATAAT-ACGTTTCGAACTAATGATTTTCAGTTCATTCATTAGGTAGTTACGCATTATCTAGTTGTTGTAAACATTCAACTCGCTGGC-GTA
droSim1	chrX:3277334-3277447 -	T---GCATA---TGATATCTTGCAGTAATTTAGTAAT-ACCTTTCGAACACATGATTTTCAG-TCATTCATGAGTTCGTCAGGTATTATCTAGTTATTGTAAACATTCAACTCGCTGGC-GGA
droSec1	super_4:2462216-2462328 +	----GCATA---TGATATGTTGCAGTAATTTAGTAAT-ACCTTTCGAACATATGATTTTCAG-TCATTCATGAGTTCGTTAGGTATTATCTAGTTATTGTAAACATTCAACTCGCTGGC-GGA
droYak2	Unknown	---------------------------------------------------------------------------------------------------------------------------
droEre2	scaffold_4690:1633112-1633231 -	GGAATTGTGTGATATTATGTTACAGTGATTTAATAAT-TCGATTCGAAGTTATGTGCTTTAA-TCATTCATAAATGCGAAACGGATTATTAAGTTATTGTTAACATTCAACTCGTTGGC-GTG
droAna3	Unknown	---------------------------------------------------------------------------------------------------------------------------
dp4	Unknown	---------------------------------------------------------------------------------------------------------------------------
droPer1	Unknown	---------------------------------------------------------------------------------------------------------------------------
droWil1	Unknown	---------------------------------------------------------------------------------------------------------------------------
droVir3	Unknown	---------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6540:31109889-31110001 -	AACAACGTATGTTACTATATTAAAATAACTAAATAATTAAAACCAAAACCTATCAATTTAAT-CAATAAACG------AAATTTGTTATCTAGCT---TTAAGTACTTGAAAAGCTCATGATA
droGri2	Unknown	---------------------------------------------------------------------------------------------------------------------------

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chrX:4262327-4262447 -	NA	ATATGCATATGCTATT--ATA-------------------------------------------TTGCAATAATTAAATAATAC-GT----------TTCGAACTA----------ATG-ATTTTCAGT---TCATTCATTAGGTAGTTACG---------------------------------------CATTATCTAGTTGTTGTAAACATTCAACTCGCTGGC-GTA
droSim1	chrX:3277334-3277447 -	1	TGCA---TA---TGAT--ATC-------------------------------------------TTGCAGTAATTTAGTAATAC-CT----------TTCGAACAC----------ATG-ATTTTCAG----TCATTCATGAGTTCGTCAGG---------------------------------------TATTATCTAGTTATTGTAAACATTCAACTCGCTGGC-GGA
droSec1	super_4:2462215-2462328 +	3	TGCA---TA---TGAT--ATG-------------------------------------------TTGCAGTAATTTAGTAATAC-CT----------TTCGAACAT----------ATG-ATTTTCAG----TCATTCATGAGTTCGTTAGG---------------------------------------TATTATCTAGTTATTGTAAACATTCAACTCGCTGGC-GGA
droYak2	Unknown	NA	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2	scaffold_4690:1633112-1633231 -	1	GGAATTGTGTGATATT--ATG-------------------------------------------TTACAGTGATTTAATAATTC-GA----------TTCGAAGTT----------ATG-TGCTTTAA----TCATTCATAAATGCGAAACG---------------------------------------GATTATTAAGTTATTGTTAACATTCAACTCGTTGGC-GTG
droEug1	Unknown	NA	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1	scf7180000301703:495454-495597 +	2	TTATA-------AAAG--GTTTTTCATTATTAAATTAAGGGTACATATTGCCATCTTAAATTGTGTGT--------AGT------GT----------TTCAAACGC----------A----TTTCCAA----TCATTAGAAAGTTCGTTACGTACTATTTGCTCGGTTTAAAAA-CAAATAGTACGTG----------------------------------TCGGA-TTT
droTak1	scf7180000415394:1160785-1160886 +	2	AAAGG----------A--AAT-------------------------------------------TTCCAATCATTTAATAGTCC-GA----------TTCGTTCTT----------A-----------------------------------------GTGCTTATTTTGAAAATGCAGTAGTGCGTTTCGGATTATTCAATTATTGTTAACAAACATC------------
droEle1	scf7180000491011:2112374-2112507 +	1	CGACATACATACATAC--ATA-------------------------------------------TTACAAAAAATATATAATAA-AG----------TGAATAGATATAAAAACAAGTGAATTTTCAAGTTCTCTTTTAACATTTTGTTGAC---TATGCACTCCTTTTTAAAATCAACTTGTTCGCA----------------------------------TT----GTC
droRho1	scf7180000779334:415671-415796 +	2	ATCTGC------TTAAAAGTT-------------------------------------------GTGTAGTTGTATAGTAACAT-ATCATAAGTTGCTCCTAAAAT----------ATT-AGTTTTAG----ATATCTATTACCTAATCAAT---------------------------------------ATTAAAATAGTTCGAATTAATAAATAGCACACTGCT-TAG
droFic1	Unknown	NA	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1	Unknown	NA	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3	Unknown	NA	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	Unknown	NA	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp4	Unknown	NA	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer1	Unknown	NA	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil1	Unknown	NA	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3	Unknown	NA	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6540:31109889-31110001 -	3	AACAACGTATGTTACT--ATA-------------------------------------------TTAAAATAACTAAATAATTAAAA----------CCAAAACCT----------ATC-AATTTAA-----TCAAT----AAA-CGAAATT---------------------------------------TGTTATCTAGCT---TTAAGTACTTGAAAAGCTCATGATA
droGri2	Unknown	NA	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

ATATGCATATGCTATTATATTGCAATAATTAAATAAT-ACGTTTCGAACTAATGATTTTCAGTTCATTCATTAGGTAGTTACGCATTATCTAGTTGTTGTAAACATTCAACTCGCTGGC-GTA

Size

Hit Count

Total Norm

droSim1

T---GCATA---TGATATCTTGCAGTAATTTAGTAAT-ACCTTTCGAACACATGATTTTCAG-TCATTCATGAGTTCGTCAGGTATTATCTAGTTATTGTAAACATTCAACTCGCTGGC-GGA	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
.....................................................................ATGAGTTCGTCAGGTATTATCT................................	22	3	574.33	0.00	33.33	409.67	131.33
.....................................................................ATGAGTTCGTCAGGTATTATC.................................	21	3	147.33	0.33	8.33	117.67	21.00
......................................................................TGAGTTCGTCAGGTATTATCT................................	21	3	142.00	0.67	9.00	113.33	19.00
......................................................................TGAGTTCGTCAGGTATTATCTA...............................	22	3	68.67	0.33	1.67	44.00	22.67
.....................................................................ATGAGTTCGTCAGGTATTATCC................................	22	3	27.33	0.00	2.33	18.33	6.67
...............................AGTAAT-ACCTTTCGAACACATGA....................................................................	23	3	20.33	1.67	0.67	9.33	8.67
...............................AGTAAT-ACCTTTCGAACACATG.....................................................................	22	3	18.67	2.67	0.67	14.33	1.00
...............................AGTAAT-ACCTTTCGAACACAT......................................................................	21	3	14.00	0.00	3.00	9.00	2.00
......................................................................TGAGTTCGTCAGGTATTATC.................................	20	3	13.67	0.33	1.33	10.33	1.67
......................................................................TGAGTTCGTCAGGTATTATCTAA..............................	23	3	10.33	0.00	0.00	5.33	5.00
.....................................................................ATGAGTTCGTCAGGGATTATCT................................	22	3	10.33	0.00	0.33	9.00	1.00
.....................................................................ATGAGTTCGTCAGGTATTATCG................................	22	3	8.00	0.00	0.67	5.33	2.00
......................................................................TGAGTTCGTCAGGTATTATCC................................	21	3	6.33	0.00	1.00	3.67	1.67
...............................AGTAAT-ACCTTTCGAACACATGAAA..................................................................	25	3	5.67	0.33	0.00	3.33	2.00
...............................AGTAAT-ACCTTTCGAACACATGG....................................................................	23	3	5.33	0.00	0.00	4.00	1.33
...............................AGTAAT-ACCTTTCGAACACA.......................................................................	20	3	4.67	0.00	0.67	4.00	0.00
......................................................................TGAGTTCGTCAGGTATTATCTAT..............................	23	3	4.33	0.33	0.33	3.00	0.67
.....................................................................ATGAGTTCGTCAGGTATTATCTT...............................	23	3	4.00	0.00	0.00	4.00	0.00
...............................AGTAAT-ACCTTTCGAACACATGT....................................................................	23	3	3.67	0.00	0.00	3.33	0.33
.....................................................................ATGAGTTCGTCAGGTATTATCTA...............................	23	3	3.33	0.00	0.00	3.00	0.33
...............................AGTAAT-ACCTTTCGAACACATGAT...................................................................	24	3	2.67	0.00	0.67	2.00	0.00
.....................................................................ATGAGTTCGTCAGGAATTATCT................................	22	3	2.33	0.00	0.00	2.33	0.00
.....................................................................ATGAGTTCGTCAGGGATTATC.................................	21	3	2.33	0.00	0.00	2.33	0.00
......................................................................TGAGTTCGTCAGGTATTATCTAAA.............................	24	3	1.67	0.00	0.00	1.33	0.33
...............................AGTAAT-ACCTTTCGAACACATGAA...................................................................	24	3	1.67	0.00	0.00	1.00	0.67
.....................................................................ATGAGTTCGTCAGGTATTATCA................................	22	3	1.67	0.00	0.00	1.67	0.00
......................................................................TGAGTTCGTCAGGTATTATCG................................	21	3	1.67	0.00	0.00	1.00	0.67
......................................................................TGAGTTCGTCAGGGATTATCT................................	21	3	1.33	0.00	0.00	1.33	0.00
.....................................................................ATGAGTTCGTCAGGTATTAT..................................	20	3	1.33	0.00	0.00	1.33	0.00
......................................................................TGATTTCGTCAGGTATTATCT................................	21	3	1.33	0.00	0.00	0.33	1.00
.....................................................................ATGAGTTCGTCAGGTATTATCTTT..............................	24	3	1.33	0.00	0.00	1.33	0.00
.....................................................................ATGAGTTCGTCAGGTATT....................................	18	3	1.33	0.00	0.00	1.00	0.33
.....................................................................ATGAGTTCGTCAGGAATTATC.................................	21	3	1.33	0.00	0.00	1.33	0.00
......................................................................TGAGTTCGTCAGGTATTATCTAC..............................	23	3	1.33	0.00	0.00	1.00	0.33
......................................................................TGAGTTCGTCAGGTATTATCTTT..............................	23	3	1.00	0.00	0.00	1.00	0.00
.....................................................................ATGATTTCGTCAGGTATTATCT................................	22	3	1.00	0.00	0.00	0.67	0.33
......................................................................TGAGTTCGTCAGGTATTATCTG...............................	22	3	1.00	0.00	0.00	0.33	0.67
.....................................................................ATGAGTTCGTCAGGTATTA...................................	19	3	1.00	0.00	0.00	1.00	0.00
.....................................................................ATGAGTTCGTCAGGCATTATCT................................	22	3	1.00	0.00	0.00	1.00	0.00
.....................................................................ATGAGTTCGTCAxGTATTATC.................................	20	3	1.00	0.00	0.00	0.00	1.00

droSec1

----GCATA---TGATATGTTGCAGTAATTTAGTAAT-ACCTTTCGAACATATGATTTTCAG-TCATTCATGAGTTCGTTAGGTATTATCTAGTTATTGTAAACATTCAACTCGCTGGC-GGA	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
......................................................................TGAGTTCGTTAGGTATTATCT................................	21	2	139.00	112.50	11.50	15.00
......................................................................TGAGTTCGTTAGGTATTATCTA...............................	22	2	80.50	67.00	5.00	8.50
......................................................................TGAGTTCGTTAGGTATTATCTAA..............................	23	2	35.00	28.50	4.00	2.50
......................................................................TGAGTTCGTTAGGTATTATCTAT..............................	23	2	32.50	32.00	0.50	0.00
.....................................................................ATGAGTTCGTTAGGTATTATCT................................	22	2	27.50	25.50	1.00	1.00
......................................................................TGAGTTCGTTAGGTATTATC.................................	20	2	15.50	13.00	0.50	2.00
......................................................................TGAGTTCGTTAGGTATTATCTAG..............................	23	2	11.50	11.00	0.00	0.50
......................................................................TGAGTTCGTTAGGTATTATCTAAA.............................	24	2	10.50	9.00	1.50	0.00
......................................................................TGAGTTCGTTAGGTATTATCTAC..............................	23	2	6.50	6.00	0.50	0.00
.....................................................................ATGAGTTCGTTAGGTATTATC.................................	21	2	5.50	4.00	0.50	1.00
......................................................................TGAGTTCGTTAGGTATTATCTAGT.............................	24	2	5.00	2.50	0.00	2.50
...............................AGTAAT-ACCTTTCGAACATATG.....................................................................	22	3	2.33	2.00	0.33	0.00
...............................AGTAAT-ACCTTTCGAACATAT......................................................................	21	3	1.67	1.33	0.00	0.33
......................................................................TGAGTTCGTTAGGTATTATCTATA.............................	24	2	2.50	2.50	0.00	0.00
......................................................................TGAGTTCGTTAGGTATTACCT................................	21	2	2.50	2.50	0.00	0.00
.....................................................................ATGAGTTCGTTAGGTATTAT..................................	20	2	2.00	2.00	0.00	0.00
......................................................................TGAGTTCGTTAGGTATTATCTACT.............................	24	2	1.50	1.00	0.00	0.50
........................................................................AGTTCGTTAGGTATTATCTAG..............................	21	2	1.50	1.50	0.00	0.00
......................................................................TGAGTTCGTTAGGTATTAT..................................	19	2	1.50	1.00	0.50	0.00
......................................................................TGAGTTCGTTAGGTATTACCTA...............................	22	2	1.50	1.50	0.00	0.00
........................................................................AGTTCGTTAGGTATTATCTAGT.............................	22	2	1.00	1.00	0.00	0.00
......................................................................TGAGTTCGTTAGGTATTAGCTA...............................	22	2	1.00	1.00	0.00	0.00
......................................................................TGAGATCGTTAGGTATTATCT................................	21	2	1.00	1.00	0.00	0.00
......................................................................TGAGTTCGTTAGGTATTAGCT................................	21	2	1.00	1.00	0.00	0.00
...............................AGTAAT-ACCTTTCGAACATATGT....................................................................	23	3	0.67	0.67	0.00	0.00
......................................................................TGATTTCGTTAGGTATTATCTA...............................	22	2	1.00	1.00	0.00	0.00
......................................................................TGAGTTCGTTAGGTATTACCTAT..............................	23	2	1.00	1.00	0.00	0.00
......................................................................TGAGTTTGTTAGGTATTATCTAA..............................	23	2	1.00	0.00	1.00	0.00
.....................................................................ATGAGTTCGTTAGGTATTATCTAA..............................	24	2	1.00	1.00	0.00	0.00
........................................................................TCTTCGTTAGGTATTATCTA...............................	20	2	0.50	0.00	0.00	0.50
.......................................................................GAGTTCGTTAGGTATTATCTAT..............................	22	2	0.50	0.50	0.00	0.00
......................................................................TGAGTTCGTTAGGTATTATCTAGTT............................	25	2	0.50	0.50	0.00	0.00
.....................................................................ATGAGTTCGTTAGGTATTA...................................	19	2	0.50	0.00	0.00	0.50
......................................................................TGAGTTCGTTAGGTATTATCTATAT............................	25	2	0.50	0.50	0.00	0.00
......................................................................TGAGTTCTTTAGGTATTATCTA...............................	22	2	0.50	0.00	0.00	0.50
..............................................AACATATGATTTGCAT-TCA.........................................................	19	2	0.50	0.00	0.00	0.50
......................................................................TGAGTTCGTTAGGTATTATCTGT..............................	23	2	0.50	0.50	0.00	0.00
......................................................................TGAGTTCGTTAGCTATTATC.................................	20	2	0.50	0.50	0.00	0.00
......................................................................TGAGTTCGCTAGGTATTATCTA...............................	22	2	0.50	0.50	0.00	0.00
......................................................................TGAGTTCGTTAGGTATTACCTT...............................	22	2	0.50	0.50	0.00	0.00
......................................................................TGAGTTCGTTAGCTATTATCT................................	21	2	0.50	0.50	0.00	0.00
......................................................................TGAGTTCGTTAGGTCTTATCT................................	21	2	0.50	0.00	0.00	0.50
......................................................................TGAGTTCGTTAGGTGTTATCT................................	21	2	0.50	0.50	0.00	0.00
......................................................................TGAGTTCGTTAAGTATTATCTAT..............................	23	2	0.50	0.50	0.00	0.00
......................................................................TGAGTTCGTTAGGTATTATCCAT..............................	23	2	0.50	0.50	0.00	0.00
......................................................................TGAGTTCGTTAGGTATTATCTAGTAA...........................	26	2	0.50	0.50	0.00	0.00
......................................................................TGAGTTCGTTAGTTATTATCTAA..............................	23	2	0.50	0.50	0.00	0.00
.......................................................................GAGTTCGTTAGGTATTATCTAG..............................	22	2	0.50	0.50	0.00	0.00
.....................................................................ATGAGTTCGTTAGGTATTATCTT...............................	23	2	0.50	0.50	0.00	0.00
......................................................................TGAGTTCATTAGGTATTATCTA...............................	22	2	0.50	0.50	0.00	0.00
......................................................................TGAGATCGTTAGGTATTATCTAT..............................	23	2	0.50	0.50	0.00	0.00
......................................................................TGAGTTCGTTCGGTATTATCTCG..............................	23	2	0.50	0.50	0.00	0.00
.............................TTAGTAAT-ACCTTTCGAACATA.......................................................................	22	3	0.33	0.33	0.00	0.00
......................................................................TGAGTTCGTTAGGTACTATCTAA..............................	23	2	0.50	0.50	0.00	0.00
......................................................................TGAGTTCTTTAGGTATTATCT................................	21	2	0.50	0.00	0.00	0.50
......................................................................TGAGTTCGTTAGGTATTATCTAGTA............................	25	2	0.50	0.50	0.00	0.00
......................................................................TGAGTTCGTTATGTATTATCT................................	21	2	0.50	0.50	0.00	0.00
......................................................................TGAGTTCGTTAGGTATTAACTAA..............................	23	2	0.50	0.50	0.00	0.00
.....................................................................ATGAGTTCGTCAGGTATTATC.................................	21	2	0.50	0.50	0.00	0.00
......................................................................TGACTTCGTTAGGTATTATCT................................	21	2	0.50	0.50	0.00	0.00
......................................................................TGAGTTCGTTAGGTATTAA..................................	19	2	0.50	0.50	0.00	0.00
.......................................................................GAGTTCGTTAGGTATTATCTATT.............................	23	2	0.50	0.50	0.00	0.00
......................................................................TGAGTTCGTTAGGAATTATCTA...............................	22	2	0.50	0.50	0.00	0.00
......................................................................AGAGTTCGTTAGGTATTATCTA...............................	22	2	0.50	0.50	0.00	0.00
.......................................................................GAGTTCGTTAGGTATTATAT................................	20	2	0.50	0.50	0.00	0.00
......................................................................TGAGTTCGTTAGGTATTAACT................................	21	2	0.50	0.50	0.00	0.00
.....................................................................ATGAGTTCGTTAGGTTTTATCT................................	22	2	0.50	0.50	0.00	0.00
.............................TTAGTAAT-ACCTTTCGAACAT........................................................................	21	3	0.33	0.00	0.00	0.33
......................................................................TGAGTTCGTTAGGTACTATC.................................	20	2	0.50	0.50	0.00	0.00
......................................................................TGAGTTCGTTAGGCATTATCTAA..............................	23	2	0.50	0.50	0.00	0.00
......................................................................TGAGTTCGTTAGGTATTAACTA...............................	22	2	0.50	0.50	0.00	0.00
......................................................................TGAGTTCGTTAGGTATTATCTAAT.............................	24	2	0.50	0.50	0.00	0.00
......................................................................TGAGTTCGTTAGGTATTATCTATC.............................	24	2	0.50	0.50	0.00	0.00
......................................................................TGAGTTCGTTAGGAATTATCTAA..............................	23	2	0.50	0.50	0.00	0.00
......................................................................TCAGTTCGTTAGGTATTATCTA...............................	22	2	0.50	0.50	0.00	0.00
......................................................................TGAGTTCGTTAGGTATTATCTAGA.............................	24	2	0.50	0.50	0.00	0.00
.....................................................................ATGAGTTCGTTAGGTATTTTC.................................	21	2	0.50	0.50	0.00	0.00

droYak2

---------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V046
Embryo

V052
Head

V120
Male body

V058
Head

M026
Head

droEre2

GGAATTGTGTGATATTATGTTACAGTGATTTAATAAT-TCGATTCGAAGTTATGTGCTTTAA-TCATTCATAAATGCGAAACGGATTATTAAGTTATTGTTAACATTCAACTCGTTGGC-GTG	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
........................................................................AATGCGAAACGGATTATTAAG..............................	21	3	107.33	0.67	4.33	0.00	102.33
........................................................................AATGCGAAACGGATTATTAAGT.............................	22	3	97.33	4.33	2.67	0.00	90.33
........................................................................AATGCGAAACGGATTATTAA...............................	20	3	9.67	0.00	0.67	0.00	9.00
........................................................................AATGCGAAACGGATTATTAAGTT............................	23	3	3.67	0.00	0.00	0.00	3.67
........................................................................AATGCGAAACGGATTATTAAA..............................	21	3	3.33	0.00	0.00	0.00	3.33
........................................................................AATGCGAAACGGATTATTAAGA.............................	22	3	3.33	0.00	0.00	0.00	3.33
......................................................................TAAATGCGAAACGGATTATTAA...............................	22	3	2.67	0.00	0.00	0.00	2.67
........................................................................AATGCGAAACGGATTATTAAGTA............................	23	3	2.33	0.00	0.33	0.00	2.00
.......................................................................AAATGCGAAACGGATTATTAAG..............................	22	3	2.00	0.33	0.00	0.00	1.67
........................................................................AATGCGAAACGGATTATT.................................	18	3	2.00	0.00	0.00	0.00	2.00
......................................................................TAAATGCGAAACGGATTATTAAG..............................	23	3	2.00	0.00	0.33	0.00	1.67
......................................................................TAAATGCGAAACGGATTATTAAA..............................	23	3	2.00	0.00	0.00	0.00	2.00
........................................................................AATTCGAAACGGATTATTAAG..............................	21	3	1.67	0.00	0.00	0.00	1.67
........................................................................AATGCGAAACTGATTATTAAG..............................	21	3	1.67	0.00	0.00	0.00	1.67
........................................................................AATGCGAAACTGATTATTAAGT.............................	22	3	1.67	0.00	0.00	0.00	1.67
.......................................................................CAATGCGAAACGGATTATTAAG..............................	22	3	1.67	0.00	0.00	0.00	1.67
........................................................................AATGCTAAACGGATTATTAAGT.............................	22	3	1.33	0.00	0.00	0.00	1.33
........................................................................AATGCGAAACGGATTATTAAGTAA...........................	24	3	1.00	0.00	0.00	0.00	1.00
........................................................................AATGCGAAACGTATTATTAAG..............................	21	3	1.00	0.00	0.00	0.00	1.00
........................................................................AATGCGAAACGGATTATTAAGTTT...........................	24	3	1.00	0.00	0.33	0.00	0.67
.........................................................................ATGCGAAACGGATTATTAAG..............................	20	3	0.67	0.00	0.00	0.00	0.67
........................................................................AATTCGAAACGGATTATTAAGT.............................	22	3	0.67	0.00	0.00	0.00	0.67
........................................................................AATGCGAAACGGATTGTTAAGT.............................	22	3	0.67	0.00	0.00	0.00	0.67
........................................................................AATGCGAAACGGATTATTAATT.............................	22	3	0.67	0.00	0.33	0.00	0.33
.............................TTAATAAT-TCGATTCGAAGTTA.......................................................................	22	2	1.00	0.00	0.00	0.00	1.00
........................................................................AATGCGAAACGGATTATTAAT..............................	21	3	0.67	0.00	0.00	0.00	0.67
........................................................................AATGCTAAACGGATTATTAAG..............................	21	3	0.67	0.00	0.00	0.00	0.67
........................................................................AATGCGAAACGGATTATTT................................	19	3	0.67	0.00	0.00	0.00	0.67
........................................................................AATACGAAACGGATTATTAAGT.............................	22	3	0.67	0.00	0.00	0.00	0.67
........................................................................AATGCGAAGCGGATTGTTAAGT.............................	22	3	0.33	0.00	0.00	0.00	0.33
......................................................................TAAATGCGAAACTGATTATTAAG..............................	23	3	0.33	0.00	0.00	0.00	0.33
........................................................................AACGCGAAACGGATTATTAAGT.............................	22	3	0.33	0.00	0.00	0.00	0.33
........................................................................AATGCGAAACGGATTATTAT...............................	20	3	0.33	0.00	0.00	0.00	0.33
........................................................................AATGAGAAACGGATTATTAAG..............................	21	3	0.33	0.00	0.00	0.00	0.33
.......................................................................AAATGCGAAGCGGATTATTAAG..............................	22	3	0.33	0.00	0.00	0.00	0.33
........................................................................AATGCGAAACGGATTATTAAGTAAA..........................	25	3	0.33	0.00	0.00	0.00	0.33
........................................................................AATGCGAGACGGATTATTAAGT.............................	22	3	0.33	0.00	0.00	0.00	0.33
........................................................................AATGCxAAACGGATTATTAAG..............................	20	3	0.33	0.00	0.00	0.00	0.33
......................................................................TAAATGCGAAACGGATTATT.................................	20	3	0.33	0.00	0.00	0.00	0.33
.......................................................................AAATGCGAAACGGATTATTAA...............................	21	3	0.33	0.00	0.00	0.00	0.33
........................................................................AATGCGAAACTGATTATTAAGTT............................	23	3	0.33	0.00	0.00	0.00	0.33
......................................................................TAAATGCGAAACGGATTATTAAAA.............................	24	3	0.33	0.00	0.00	0.00	0.33
........................................................................AATGCGAAACGTATTATTAAGT.............................	22	3	0.33	0.00	0.00	0.00	0.33
........................................................................AATGCGAGGCGGATTATTAA...............................	20	3	0.33	0.00	0.00	0.00	0.33
........................................................................AATTCGAAACGGATTATTAA...............................	20	3	0.33	0.00	0.00	0.00	0.33
.........................................................................ATGCGAAACTGATTATTAAGT.............................	21	3	0.33	0.00	0.00	0.00	0.33
........................................................................AATGCGAAACGGATTATTGAGT.............................	22	3	0.33	0.00	0.00	0.00	0.33
........................................................................AATGCGAAACGGATTCTTAAGT.............................	22	3	0.33	0.00	0.00	0.00	0.33
........................................................................AATGCGxAACGGATTATTAAG..............................	20	3	0.33	0.00	0.00	0.00	0.33
........................................................................AATGCGAAACGGATTAATAAA..............................	21	3	0.33	0.00	0.00	0.00	0.33
........................................................................AATGCGAACCGGCTTATTAAGT.............................	22	3	0.33	0.00	0.33	0.00	0.00
........................................................................AATGCGAAACGGATTATTAAGAA............................	23	3	0.33	0.00	0.00	0.00	0.33
........................................................................AGTGCGAAACGGATTATTAAGT.............................	22	3	0.33	0.00	0.00	0.00	0.33
........................................................................AATGCGAAACGGATTATTAAGTTA...........................	24	3	0.33	0.00	0.00	0.00	0.33
.......................................................................AAATGCGAAACGGATTATTAAGT.............................	23	3	0.33	0.00	0.00	0.00	0.33
........................................................................AATGCGAAACGGATTATTACGT.............................	22	3	0.33	0.00	0.00	0.00	0.33
........................................................................AATGCGAAGCGGATTATTAAGT.............................	22	3	0.33	0.00	0.00	0.00	0.33
........................................................................ACTGCGAAACGGATTATTAAG..............................	21	3	0.33	0.00	0.00	0.00	0.33
........................................................................AATGCGAAACGGATTATTAAGC.............................	22	3	0.33	0.00	0.00	0.00	0.33
........................................................................AATGCGAGGCGGATTATTAAGT.............................	22	3	0.33	0.00	0.00	0.00	0.33
........................................................................AATGCGAAACGGATTATTACG..............................	21	3	0.33	0.00	0.00	0.00	0.33
.......................................................................AAATGCGAACCGGATTATTAAG..............................	22	3	0.33	0.33	0.00	0.00	0.00
........................................................................AATGCGAAACGGATTTTTAAGT.............................	22	3	0.33	0.00	0.00	0.00	0.33
........................................................................AATGCGAAACAGATTATTAAGT.............................	22	3	0.33	0.33	0.00	0.00	0.00
........................................................................AATGCGAAACAGATTATTAAG..............................	21	3	0.33	0.00	0.33	0.00	0.00
........................................................................GATGCGAAACGGATTATTAAG..............................	21	3	0.33	0.00	0.00	0.00	0.33
........................................................................AATGCGAAACGGATTATTAAGTC............................	23	3	0.33	0.00	0.00	0.00	0.33
........................................................................AATGCGAAACAGATTATTACG..............................	21	3	0.33	0.00	0.33	0.00	0.00
........................................................................AATGCGAAACGGATTATTAAC..............................	21	3	0.33	0.00	0.00	0.00	0.33
........................................................................AATGCGCAACGGATTATTAAG..............................	21	3	0.33	0.00	0.00	0.00	0.33
........................................................................AATGCGAAACGGATTATTA................................	19	3	0.33	0.00	0.00	0.00	0.33
.......................................................................AAATGCGAAACGGATTATTA................................	20	3	0.33	0.00	0.33	0.00	0.00
........................................................................AATGCGAAACGGATTATTAAGTG............................	23	3	0.33	0.00	0.00	0.00	0.33
........................................................................AATGCGAAACGGGTTATTAAG..............................	21	3	0.33	0.00	0.00	0.00	0.33
........................................................................AATGCGAAACGGACTATTAA...............................	20	3	0.33	0.00	0.00	0.00	0.33

droAna3

---------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

dp4

---------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

droPer1

---------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

droWil1

---------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V117
Male body

V118
Embryo

V119
Head

M020
Head

droVir3

---------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

droMoj3

AACAACGTATGTTACTATATTAAAATAACTAAATAATTAAAACCAAAACCTATCAATTTAAT-CAATAAACG------AAATTTGTTATCTAGCT---TTAAGTACTTGAAAAGCTCATGATA	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.................................................................................TTTGTTATCTAGCT---GTATG....................	19	3	0.33	0.00	0.33	0.00	0.00

droGri2

---------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V109
Male body

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image				None		None	None	None	None	None		None
UNAFold Image				None		None	None	None	None	None		None

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image				None		None					None	None	None	None	None	None	None	None		None
UNAFold Image				None		None					None	None	None	None	None	None	None	None		None