dme-mir-977- 12- and 20-way alignments

dme-mir-977	chrX:19453055-19453153 +	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 19453120-19453140
   star strand at position 19453079-19453100
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chrX:19453040-19453168 +	GGAATCCCAACA-CAA-C--GAATCAACAAA-------------------------------------------------------------------------------------CAAGGTATGCTTTAGATAACTCGAATATCACATCTTCA---------GTGTTCGAAATCTGATGAGATA-TTCACGTTGTCTAAATCATGTTTTGTACGAAACT---------------------------------------ACA----------------ACTAA
droSim1	chrX:15018618-15018753 +	GGAATACCAACT---------------------CCGGAGT------------------------GCCGAAAATGCAT-------------------------------CC------CAAGGTATGGTTTAGATAACTCGAATATCACATTTTCA---------GTGTTCGATATCTGATGAGATA-TTCACGTTGTCTAAACCATGGTTTGTTT---------------------------------------TTGAAAACT----------------ACTCA
droSec1	super_8:1735350-1735483 +	GGAATACCAACT---------------------CCGGAGT------------------------GCCGAAAATTCAT-------------------------------CC------CAAGGTATGGTTTAGATAACTCGAATATCACATCTTCA---------GTGTTCGATATCTGGTGAGATA-TTCACGTTGTCTAAACCATGGTTTGTTTGAA-----------------------------------------AACT----------------ACTCA
droYak2	chrX:11885613-11885784 -	CCGATTCCGATT-C---G--GAATCAACCAAGTGCGGACA------------------------GCTCAGAGTTCAC-------------------------------CC------CAAGGTATGGCCTAGATAACACGGGTATCACATCTTTA-T-------GCATTCGATATCTGGTGAGATA-TTCACGTTGTCTAAACCATGTTTTGTAAGGAAATG----------CACTCTGCTCATCAGTTA---------AACT----------------ACTAA
droEre2	scaffold_4690:9689024-9689218 +	GGGATCCCGGATTC---G--GAGTCAACAAA---------------CTCTTGTCAAACAAACGAGC--AGAATTCAA-------------------------------CC------CAAGGTATGGCCTAGATAACTCGGGTATCACATCTTTA-T-------GCATTCGATATCTGGTGAGATAATTCACGTTGTCTAAACCATGTTTTGTAAGAAATAACGCCTTAACTCGGTCTGCAGCTCAAATAAACTTGG-----T----------------GTTCA
droAna3	scaffold_13417:2467442-2467579 -	CCTACCCCCACA---------------------CCAGCGAGGCACACGCGTAC-----------------------C-------------------------------GC------CGAGGTTCGGCCTCGATCACGAGAACGTCGCATCTTAGTT-------ACA-TTTCCATATGATGAGATA-TTCACGTCGTCGAAACCGTGTCTCGGCT---------------------------------------TGGC-CACC---------------AATCGC
dp4	Unknown	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer1	Unknown	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil1	scaffold_181096:7956911-7957043 +	GTGATGTGAC-ACC-GTGGACGATCAACA----------------------------------------AAATTC-------------------------------------------ATATACAATTTCAATAACGTAGATATCGCATCGTTTTTTTTTACCATATTTGATAAGAGATGAGATA-TTCACGTTGTTGAAGTTGTGAAGGAATT----------------------------------------------------------------AAAAA
droVir3	scaffold_13042:906546-906734 -	ACAACAACAGGA---------------------ATAGCAACGGAAACAGGAAC-----------------------CGGAACAGAAACAGGAAAAAGAAATTGTGTTCCCCCTGGCC-CAGCCCAGTTGCGATTGCGCGGACATCTCATCGTATAA-------ACATTCGATAACCAACGAGATA-TTCACGTTATCGAGACTGAGACGTCGGCAAA-----------------------------------------GACTGCAAGATTGTGCGACAAGTGA
droMoj3	scaffold_6328:2900861-2900984 -	ACAACAACAACA-T---G--AGTTAAACGAAATG-AACCA------------------------GTTCGTTGTTCTG-------------------------------GC------C-CAGCCCGGTTCCGATTGCGCGGACATCTCATCGTCTGA-------CCATTCGATAACCGATGAGATA-TTCACGTTATCGAGA----------------------------------------------------------------------------------
droGri2	Unknown	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chrX:19453040-19453168 +	NA	GGAATCCCAA-CACAACGAATCAAC------------------------------------------------------------------------------AAACAAGGTATGCTTTAGATAACTCGAATATCA-C--ATCTTCA---------GTGTTCGAAATCTGATGAGATA-TTCACGTTGTCTAA--------ATCATGTTTTG-------TACGA--------------------------------AACTACAACTAA
droSim1	chrX:15018618-15018753 +	3	GGAATACCAA-CTCC-----G----------GA--------------------------------------------GTGCCGAA---------AATGC---ATCCCAAGGTATGGTTTAGATAACTCGAATATCA-C--ATTTTCA---------GTGTTCGATATCTGATGAGATA-TTCACGTTGTCTAA--------ACCATGGTTTG-------TTTTT--------------------------------GAAAACTACTCA
droSec1	super_8:1735350-1735483 +	6	GGAATACCAA-CTCC-----G----------GA--------------------------------------------GTGCCGAA---------AATTC---ATCCCAAGGTATGGTTTAGATAACTCGAATATCA-C--ATCTTCA---------GTGTTCGATATCTGGTGAGATA-TTCACGTTGTCTAA--------ACCATGGTTTG-------TTTGA--------------------------------A--AACTACTCA
droYak2	chr3L:16663963-16664080 -	40	TGGATACAATACA-----------------------------------------------------------------------------------------ATTCAAAGGCATGA-TGACTCAACTCGAACATCA-C--ACTTCGA---------TTATTAAGATTGTGTCACTATA-TTAATGATAGCTCT--------TCTCCGCTCTT-------ATCGG--------------------------------CACAATGGCACA
droEre2	scaffold_4690:9689018-9689184 +	4	GGGATCGGGA-TCCC-----G----------GATTCGGAGTCAACAAA-------------CTCTTG--TCAAACAA--------ACGAGC-AGAATTC---AACCCAAGGTATGGCCTAGATAACTCGGGTATCA-C--ATCTTTAT--------GCATTCGATATCTGGTGAGATAATTCACGTTGTCTAA--------ACCATGTTTTG-------TAAGA--------------------------------AATAACGCCTTA
droEug1	scf7180000409230:879517-879656 -	455	TATATCCATA-T----------------------------CCA--------TGTCCAGTGG----------------AAATC------TACAGGCCACC---AACCCAAGGTCTGGTCTCGATCACGCGGGTATCTGC--ATTT-GC---------ATTTTGTATATCTGGTGAGATA-TTCACGTAGTCGAA--------TTCAAGCCTTG-------GACCG--------------------------------A------ACTTC
droBia1	scf7180000302069:1150852-1151014 -	35	GGGATCCCCAACGTC-----GCAGT--GGG----------TC-----CTATGTTCCAG---TACTAG--TC---CAG--------ACCTAC-CCAATTC---ACACCAAGGCCTGGCCTCGATCACGCGGGTATCG-C--ATCT------------GCAACTGATATCTGATGAGATA-TTCACGTCTTCGAA--------ACCAAGCCTTG-------GCCAC--------------------------------GAATTTGGCTTA
droTak1	scf7180000410787:48950-49080 +	20	CAACACGCG--------GAATCAAAATGGT----------TTG--------------------------------------------------------------------TTTACTT-----TTTGTAAA-------------------------------------------TAAA-TTAATTAAATATCTGAAAGCTTTGAAAGCTATTGTTACTGACAGTGAAATTAAATTAGACGTTAATAAACTG--ACCGAATAGCTTTAA
droEle1	scf7180000490751:1118890-1119023 +	3	CAGATCGTGA-T----------------------------CCA-----------------------------------------------T-CCATTCC---CCTCCAAGGTATGGACTCGATCACGCGAGTATCG-C--ACCTTCCT--------GCAATCGATAATCGGTGAGATA-TTCACGTCGTCGAA--------TCCATGTCTTG-------GGCAA---------------------------ATCATCATTTCATTTAA
droRho1	scf7180000761121:189932-190086 -	9	ATC---CCAA-ATCT-----T---------AGATCCCGACCCATCCAC-------------TGCCAGCAT------------------CAT-CCATTCC---ACACCAAGGTCTGGCCTCGATCACGCGAGTATCG-C--ACCTTCCT--------GCAATCGATATTCGGTGAGATA-TTCACGTCGTCGAA--------GCCGTGCCTTG-------GTCAG--------------------------------A-GTTTGGCTAA
droFic1	scf7180000454073:1734028-1734176 +	2	CTAATTCCCG-C------------------------------------------------------------------------A---------AGTCC---AATCCAACATCCGATTTCGACCACGTGGGTATCA-CTCACCTTTCC------GCTCATTTGATATCGGGTGAGATA-TTCACGTCGTTGAA--------TCCGTGTCTTG-------GAAAGGAGTTTATGTTATATAATAATATA-----------CTTTACTTA
droKik1	scf7180000302517:1183794-1183964 +	2	GTAACCAGCT--------------------AAACAGCTACCCATCTACTCAGCTCCTCTGG----------------GAGTCGAGGC--TC-TAGATGCAAACCTCCATGGCACGGTCTGGATTACGAGAATATCG-C--ACCTTTGA------C-GCCTTTGATATCTGGTGAGATA-TTCACGTGGTCGAG--------TCCGTGTCTAG-------GACCA--------------------------------AGTTACAGCTGA
droAna3	scaffold_13417:2467442-2467560 -	4	GGCACACGCG-T--------------------------------------------------------------------------------------A---CCGCCGAGGTTCGGCCTCGATCACGAGAACGTCG-C--ATCTTAGT--------TACATTTCCATATGATGAGATA-TTCACGTCGTCGAA--------ACCGTGTCTCG-------GCTTG--------------------------------GCCACCAATCGC
droBip1	scf7180000395874:39803-39929 -	6	GCTACCCAAA-C-------------------------------------------------------------------------------------GCATACCGCTGAGGTCCGGCCTCGATCACGAGAACGTCG-C--ATCTTAGT--------TACGTTTTCATATGATGAGATA-TTCACGTCGTCGAA--------ACCGTGCCTCG-------GCG-A---------------------------ATCGGAAACACACCTAG
dp4	Unknown	NA	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer1	Unknown	NA	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil1	scaffold_181096:7956913-7957043 +	4	GATGTGACAC-CGTGGACGATCAACAA-------------------------------------------------------------------AATTC---------ATATACAATTTCAATAACGTAGATATCG-C--ATCGTTTTTTTTTACCATATTTGATAAGAGATGAGATA-TTCACGTTGTTGAA--------GTTGTGAAGGA-------ATTAA--------------------------------A---------AA
droVir3	scaffold_13042:906546-906707 -	64	GGAACCGGAA-CAGAAACAGGAAAAAG--A----------AA-----TTGTGTTCC---------------------------------------CCCT---G--GCCCAGCCCAGTTGCGATTGCGCGGACATCT-C--ATCGTATA------A-ACATTCGATAACCAACGAGATA-TTCACGTTATCGAG--------ACTGAGACGTC-------GGCAA-------------AGACTGCAAGATTG-----TGCGACAAGTGA
droMoj3	scaffold_6328:2900856-2900969 -	22	GTTAAACGAAATGAA-----CCAGT--TCG----------T-------------------------------------------T---------GTTCT---G--GCCCAGCCCGGTTCCGATTGCGCGGACATCT-C--ATCGTCTG------A-CCATTCGATAACCGATGAGATA-TTCACGTTATCGAG--------ACTGCG-------------------------------------------------------------
droGri2	Unknown	NA	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

GGAATCCCAACA-CAA-C--GAATCAACAAA-------------------------------------------------------------------------------------CAAGGTATGCTTTAGATAACTCGAATATCACATCTTCA---------GTGTTCGAAATCTGATGAGATA-TTCACGTTGTCTAAATCATGTTTTGTACGAAACT---------------------------------------ACA----------------ACTAA

Size

Hit Count

Total Norm

droSim1

GGAATACCAACT---------------------CCGGAGT------------------------GCCGAAAATGCAT-------------------------------CC------CAAGGTATGGTTTAGATAACTCGAATATCACATTTTCA---------GTGTTCGATATCTGATGAGATA-TTCACGTTGTCTAAACCATGGTTTGTTT---------------------------------------TTGAAAACT----------------ACTCA	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
................................................................................................................................TAGATAACTCGAATATCACATTTT...................................................................................................................................	24	1	18.00	0.00	0.00	18.00	0.00
.................................................................................................................................................................................ATGAGATA-TTCACGTTGTCTA....................................................................................	21	1	18.00	0.00	1.00	17.00	0.00
................................................................................................................................TAGATAACTCGAATATCACATT.....................................................................................................................................	22	1	16.00	0.00	0.00	16.00	0.00
.................................................................................................................................................................................ATGAGATA-TTCACGTTGTCTAA...................................................................................	22	1	13.00	0.00	0.00	13.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAA..................................................................................	22	1	7.00	0.00	0.00	7.00	0.00
.................................................................................................................................................................................ATGAGATA-TTCACGTTGTCT.....................................................................................	20	1	7.00	0.00	0.00	7.00	0.00
................................................................................................................................TAGATAACTCGAATATCACATTTTC..................................................................................................................................	25	1	4.00	0.00	0.00	4.00	0.00
................................................................................................................................TAGATAACTCGAATATCACATTT....................................................................................................................................	23	1	3.00	0.00	0.00	3.00	0.00
.................................................................................................................................................................................ATGAGATA-TTCACGTTGTCC.....................................................................................	20	1	2.00	0.00	0.00	2.00	0.00
.................................................................................................................................................................................ATGAGATA-TTCACGTTGTCTAAA..................................................................................	23	1	2.00	0.00	0.00	2.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAA...................................................................................	21	1	2.00	0.00	0.00	2.00	0.00
................................................................................................................................TAGATAACCCGAATATCACATTTT...................................................................................................................................	24	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAG..................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
.................................................................................................................................................................................ATGAGATA-TTCACGTTGTCG.....................................................................................	20	1	1.00	0.00	0.00	1.00	0.00
.....................................................................................................................................................................GTTCGACATCxGATGAGAT...................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
.................................................................................................................................................................................ATGAGATA-TTCACGTTGCCTA....................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTTGTCTA....................................................................................	20	1	1.00	0.00	0.00	1.00	0.00
..........................................................................................................................................................................................................CATGGTTTTTGT---------------------------------------TTGAAA........................	18	1	1.00	0.00	1.00	0.00	0.00

droSec1

GGAATACCAACT---------------------CCGGAGT------------------------GCCGAAAATTCAT-------------------------------CC------CAAGGTATGGTTTAGATAACTCGAATATCACATCTTCA---------GTGTTCGATATCTGGTGAGATA-TTCACGTTGTCTAAACCATGGTTTGTTTGAA-----------------------------------------AACT----------------ACTCA	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
..................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAA..................................................................................	22	1	104.00	96.00	6.00	2.00
..................................................................................................................................................................................TGAGATA-TTCACGTTGTCT.....................................................................................	19	1	80.00	15.00	14.00	51.00
..................................................................................................................................................................................TGAGATA-TTCACGTTGTCTA....................................................................................	20	1	37.00	36.00	0.00	1.00
..................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAA...................................................................................	21	1	32.00	30.00	0.00	2.00
..................................................................................................................................................................................TGAGATA-TTCGCGTTGTCT.....................................................................................	19	1	8.00	0.00	0.00	8.00
................................................................................................................................TAGATAACTCGAATATCACATC.....................................................................................................................................	22	1	7.00	6.00	0.00	1.00
..................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAAA.................................................................................	23	1	4.00	3.00	0.00	1.00
................................................................................................................................TAGATAACTCGAATATCACAT......................................................................................................................................	21	1	3.00	2.00	1.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACTTTGTCT.....................................................................................	19	1	2.00	1.00	0.00	1.00
..................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAT...................................................................................	21	1	2.00	2.00	0.00	0.00
................................................................................................................................TAGATAACTCGAATATCACA.......................................................................................................................................	20	1	2.00	1.00	0.00	1.00
..................................................................................................................................................................................TGAGATA-TTCACGTTGTCCAAA..................................................................................	22	1	1.00	1.00	0.00	0.00
..................................................................................................................................................................................TGAGGTA-TTCACGTTGTCTA....................................................................................	20	1	1.00	1.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTTGTCGA....................................................................................	20	1	1.00	1.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTTGTCTTT...................................................................................	21	1	1.00	1.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-ATCACGCTGTCT.....................................................................................	19	1	1.00	0.00	0.00	1.00
..................................................................................................................................................................................TGGGATA-TTCACGTTGTCTAAA..................................................................................	22	1	1.00	1.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTTGTCCA....................................................................................	20	1	1.00	1.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAT..................................................................................	22	1	1.00	1.00	0.00	0.00
...................................................................................................................................................................................GAGATA-TTCACGTTGTTGAA...................................................................................	20	1	1.00	1.00	0.00	0.00
..................................................................................................................................................................................TGGGATA-TTCACGTTGTCT.....................................................................................	19	1	1.00	0.00	0.00	1.00

droYak2

CCGATTCCGATT-C---G--GAATCAACCAAGTGCGGACA------------------------GCTCAGAGTTCAC-------------------------------CC------CAAGGTATGGCCTAGATAACACGGGTATCACATCTTTA-T-------GCATTCGATATCTGGTGAGATA-TTCACGTTGTCTAAACCATGTTTTGTAAGGAAATG----------CACTCTGCTCATCAGTTA---------AACT----------------ACTAA	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
..................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAA..................................................................................	22	1	46.00	0.00	0.00	44.00	1.00	1.00
..................................................................................................................................................................................TGAGATA-TTCACGTTGTCT.....................................................................................	19	1	23.00	0.00	2.00	15.00	6.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAA...................................................................................	21	1	16.00	0.00	0.00	15.00	1.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTTGTCTA....................................................................................	20	1	16.00	0.00	0.00	16.00	0.00	0.00
................................................................................................................................TAGATAACACGGGTATCACAT......................................................................................................................................	21	1	3.00	0.00	0.00	3.00	0.00	0.00
...............................................................................................................................CTAGATAACACGGGTATCACAT......................................................................................................................................	22	1	2.00	0.00	0.00	2.00	0.00	0.00
................................................................................................................................TAGATAACACGGGTATCACA.......................................................................................................................................	20	1	2.00	0.00	1.00	1.00	0.00	0.00
................................................................................................................................TAGATAACACGGGTATCACATC.....................................................................................................................................	22	1	2.00	0.00	0.00	1.00	0.00	1.00
...............................................................................................................................CTAGATAACACGGGTATCACA.......................................................................................................................................	21	1	2.00	0.00	0.00	1.00	1.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAAC.................................................................................	23	1	1.00	0.00	0.00	0.00	0.00	1.00
..................................................................................................................................................................................TGAGATA-TTCACGTTGTTGA....................................................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................................................................................................................................................TGAxATA-TTCACGTTGTCTAAA..................................................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAC...................................................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACATTGTCTAAA..................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCAGGTTGTCTA....................................................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTTCTCTA....................................................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAT...................................................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
...................................................................................................................................................................................................CCTAAACCxTGTTTTGTAA.....................................................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTTATCTAAA..................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................................................................................................................................................ACAGATA-TTCACGTTGTCT.....................................................................................	19	1	1.00	1.00	0.00	0.00	0.00	0.00

droEre2

GGGATCCCGGATTC---G--GAGTCAACAAA---------------CTCTTGTCAAACAAACGAGC--AGAATTCAA-------------------------------CC------CAAGGTATGGCCTAGATAACTCGGGTATCACATCTTTA-T-------GCATTCGATATCTGGTGAGATAATTCACGTTGTCTAAACCATGTTTTGTAAGAAATAACGCCTTAACTCGGTCTGCAGCTCAAATAAACTTGG-----T----------------GTTCA	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
................................................................................................................................TAGATAACTCGGGTATCACAT......................................................................................................................................	21	1	3.00	0.00	2.00	0.00	1.00
..................................................................................................................................................................................TGAGATAATTCACGTTGTCT.....................................................................................	20	1	2.00	0.00	0.00	0.00	2.00
..................................................................................................................................................................................TGAGATAATTCACGTTGTCTA....................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
................................................................................................................................TAGATAACTCGGGTATCACATC.....................................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
................................................................................................................................TAGATAACTCGGGTATCACA.......................................................................................................................................	20	1	1.00	0.00	0.00	0.00	1.00
........................................................................TTCAA-------------------------------CC------CAAGGTATGGCC...........................................................................................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
..................................................................................................................................................................................TGAGATAATTCACGTTGT.......................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
.......................................................................................................................................................................................................AACCATGTTTTTTAAGAA..................................................................	18	1	1.00	0.00	0.00	0.00	1.00
..................................................................................................................................................................................TGAGATAATTCACGTTGTCTAAA..................................................................................	23	1	1.00	0.00	0.00	0.00	1.00
..............................................................GAGC--AGxATTGAA-------------------------------CC------CAAG...................................................................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
...............................................................AGC--AGxATTGAA-------------------------------CC------CAAGGT.................................................................................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00

droAna3

CCTACCCCCACA---------------------CCAGCGAGGCACACGCGTAC-----------------------C-------------------------------GC------CGAGGTTCGGCCTCGATCACGAGAACGTCGCATCTTAGTT-------ACA-TTTCCATATGATGAGATA-TTCACGTCGTCGAAACCGTGTCTCGGCT---------------------------------------TGGC-CACC---------------AATCGC	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
..................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAA...................................................................................	21	1	197.00	173.00	8.00	16.00	0.00
................................................................................................................................TCGATCACGAGAACGTCGCATCT....................................................................................................................................	23	1	162.00	144.00	9.00	9.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAAA..................................................................................	22	1	107.00	102.00	1.00	4.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTCGTCGA....................................................................................	20	1	103.00	91.00	3.00	9.00	0.00
.................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGAA...................................................................................	22	1	47.00	44.00	0.00	3.00	0.00
.................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGA....................................................................................	21	1	30.00	29.00	1.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAAT..................................................................................	22	1	29.00	25.00	3.00	1.00	0.00
................................................................................................................................TCGATCACGAGAACGTCGCAT......................................................................................................................................	21	1	26.00	21.00	0.00	5.00	0.00
.................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGAAA..................................................................................	23	1	20.00	16.00	2.00	2.00	0.00
................................................................................................................................TCGATCACGAGAACGTCGCATC.....................................................................................................................................	22	1	14.00	14.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTCGTCG.....................................................................................	19	1	10.00	8.00	0.00	2.00	0.00
.................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGAAT..................................................................................	23	1	10.00	7.00	1.00	2.00	0.00
.................................................................................................................................................................................ATGAGATA-TTCACGTCGTCG.....................................................................................	20	1	10.00	10.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAATT.................................................................................	23	1	8.00	8.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAAAT.................................................................................	23	1	5.00	4.00	1.00	0.00	0.00
................................................................................................................................TCGATCACGAGAACGTCGCA.......................................................................................................................................	20	1	5.00	5.00	0.00	0.00	0.00
................................................................................................................................TCGATCACGAGAACGTCTCATCT....................................................................................................................................	23	1	3.00	2.00	0.00	1.00	0.00
................................................................................................................................TCGATCACGAGAACGTCGCATCTTT..................................................................................................................................	25	1	3.00	1.00	1.00	1.00	0.00
................................................................................................................................TAGATCACGAGAACGTCGCATCT....................................................................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAT...................................................................................	21	1	3.00	2.00	0.00	1.00	0.00

dp4

-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

droPer1

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

droWil1

GTGATGTGAC-ACC-GTGGACGATCAACA----------------------------------------AAATTC-------------------------------------------ATATACAATTTCAATAACGTAGATATCGCATCGTTTTTTTTTACCATATTTGATAAGAGATGAGATA-TTCACGTTGTTGAAGTTGTGAAGGAATT----------------------------------------------------------------AAAAA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
..................................................................................................................................................................................TGAGATA-TTCACGTTGTTGAAG..................................................................................	22	1	330.00	286.00	21.00	12.00	11.00
..................................................................................................................................................................................TGAGATA-TTCACGTTGTTGA....................................................................................	20	1	264.00	257.00	1.00	5.00	1.00
..................................................................................................................................................................................TGAGATA-TTCACGTTGTTGAA...................................................................................	21	1	128.00	121.00	3.00	4.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTTGTTGAAGT.................................................................................	23	1	79.00	64.00	2.00	10.00	3.00
................................................................................................................................TCAATAACGTAGATATCGCATC.....................................................................................................................................	22	1	18.00	9.00	2.00	0.00	7.00
..................................................................................................................................................................................TGAGATA-TTCACGTTGTTGAAA..................................................................................	22	1	17.00	17.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTTGTTGAAGA.................................................................................	23	1	8.00	7.00	1.00	0.00	0.00
................................................................................................................................TCAATAACGTAGATATCGCAT......................................................................................................................................	21	1	6.00	3.00	0.00	0.00	3.00
..................................................................................................................................................................................TGAGATA-TTCACGTTGTTGAT...................................................................................	21	1	5.00	5.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTTGTTG.....................................................................................	19	1	5.00	4.00	0.00	1.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTTGTTGAAT..................................................................................	22	1	4.00	4.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTTGTTGAAGTT................................................................................	24	1	3.00	3.00	0.00	0.00	0.00
...................................................................................................................................................................................GAGATA-TTCACGTTGTTGA....................................................................................	19	1	3.00	3.00	0.00	0.00	0.00
.....................................................................................................................................................................ATTTGATAAAAGATGTGAT...................................................................................................	19	1	2.00	2.00	0.00	0.00	0.00
...................................................................................................................................................................................GAGATA-TTCACGTTGTTGAAG..................................................................................	21	1	2.00	2.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACTTTGTTGAAG..................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................CGAGATA-TTCACGTTGTTGAAG..................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATC-TTCACGTTGTTGA....................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
.................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGA....................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATG-TTCGCGTTGTTGAAG..................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
..................................................................................................................................................................................TGAGATA-TTCACGTTGTTTA....................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTTACGTTGTTGAAG..................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
.............................................................................................................................................................................AGAGATGAGATA-TTCACGTTGT.......................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................AATAACGTAGATATCGCATC.....................................................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
.......................................................................................................................................................................................................AGTTGTGATGGAATT----------------------------------------------------------------AAA..	18	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTCGTTGA....................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
................................................................................................................................TCAATAACGTAGATATCGCAG......................................................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
..................................................................................................................................................................................TGAGATA-CTCACGTTGTTGAA...................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTTATTGAAG..................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
......................................................................................................................................................................................ATA-TTAAAGTTGTTGAAGT.................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTCGTCGA....................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
........................................................................................................................................................................................................GTTGTGATGGAATT----------------------------------------------------------------AAAC.	18	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGxTGTTGA....................................................................................	19	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTTGTTGAAATA................................................................................	24	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTTGTTGAACT.................................................................................	23	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................................................................................TGAGATG-TTCACGTTGTTGA....................................................................................	20	1	1.00	0.00	0.00	1.00	0.00
...................................................................................................................................................GTCGTTTTTTTTTxCCATATTT..................................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTTGTTGACG..................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................GGAGATA-TTCACGTTGTTGAAGT.................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCATGTTGTTGAAG..................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTTCTTGAAGT.................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TGCGATA-TTCACGTTGTTGAA...................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTTGTTGG....................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTTGTTGAAAT.................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATG-TTCACGTTGTTGAA...................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................................................................................TGAGATA-TTCGCGTTGTTGA....................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TGGGATA-TTCACGTTGTTGA....................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................................................................ATATTTGATxAGAGTTGAGA....................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTTGTTGT....................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTCGTTGAAG..................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTTGTCGAAGT.................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTTGTTGAATT.................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCGCGTTGTTGAAG..................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGCTGTTG.....................................................................................	19	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACTTTGTTGAA...................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGCTGTTGAA...................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCGCGTTGTTGAA...................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCCCGTTGTTGAAG..................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTTGTTGAAAA.................................................................................	23	1	1.00	1.00	0.00	0.00	0.00

droVir3

ACAACAACAGGA---------------------ATAGCAACGGAAACAGGAAC-----------------------CGGAACAGAAACAGGAAAAAGAAATTGTGTTCCCCCTGGCC-CAGCCCAGTTGCGATTGCGCGGACATCTCATCGTATAA-------ACATTCGATAACCAACGAGATA-TTCACGTTATCGAGACTGAGACGTCGGCAAA-----------------------------------------GACTGCAAGATTGTGCGACAAGTGA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
..................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGA..................................................................................	22	1	71.00	55.00	0.00	1.00	15.00	0.00
..................................................................................................................................................................................CGAGATA-TTCACGTTATCGAG...................................................................................	21	1	25.00	23.00	1.00	0.00	1.00	0.00
................................................................................................................................GCGATTGCGCGGACATCTCATC.....................................................................................................................................	22	1	14.00	10.00	0.00	0.00	4.00	0.00
..................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGT..................................................................................	22	1	4.00	4.00	0.00	0.00	0.00	0.00
................................................................................................................................GCGATTGCGCGGACATCTCATCG....................................................................................................................................	23	1	4.00	3.00	0.00	0.00	1.00	0.00
......................................................................................................................................................................................ATA-TTCACGTTATCGAGACTGA..............................................................................	22	1	3.00	1.00	0.00	0.00	2.00	0.00
..................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGG..................................................................................	22	1	2.00	0.00	0.00	0.00	2.00	0.00
..................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGACC................................................................................	24	1	2.00	0.00	0.00	0.00	2.00	0.00
................................................................................................................................GCGATTGCGCGGCCATCTCATC.....................................................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
................................................................................................................................GCGATTGCGCGGACATCTCCTC.....................................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
......................................................................................................................................................................TTCGATAACGAACGAGAC...................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00	0.00
..................................................................................................................................................................................CGAGATA-TTCACGTTATCGA....................................................................................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................................................................................................................................................CGAGATA-TTCCCGTTATCGAGA..................................................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
................................................................................................................................GCGATTGCGCGGACATCTCAT......................................................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
................................................................................................................................GCGATTGCGCGGACATCTCATCGTA..................................................................................................................................	25	1	1.00	1.00	0.00	0.00	0.00	0.00
..................................................................................AAAAACAGGAAAAAAAAA.......................................................................................................................................................................................	18	2	0.50	0.00	0.00	0.50	0.00	0.00
......................................................................................................................................................................................ATA-TTCACGTTCTCGAGACTGA..............................................................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
ACAACAACAACA---------------------ATAGCAAC..................................................................................................................................................................................................................................................	20	3	0.33	0.33	0.00	0.00	0.00	0.00
..................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGAG.................................................................................	23	1	1.00	1.00	0.00	0.00	0.00	0.00
..................................................................................................................................................................................CGAGATA-TTCACGTTATCG.....................................................................................	19	1	1.00	1.00	0.00	0.00	0.00	0.00
................................................................................................................................GCGATTGCGCGGACATCACATC.....................................................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
.........................................................................................................................................................................GATAACGAACGAGATC-TT...............................................................................................	18	1	1.00	1.00	0.00	0.00	0.00	0.00
..................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGAA.................................................................................	23	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................................................................................................................................................CGGGATA-TTCACGTTATCGAGA..................................................................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................................................................................................CGATAACGAACGAGACA-TT...............................................................................................	19	1	1.00	1.00	0.00	0.00	0.00	0.00
..................................................................................................................................................................................CGAGATA-TTCACGTCATCGAGA..................................................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
....................................................................................................................................................................................CGAGA-TTCACGTTATCGAG...................................................................................	19	1	1.00	1.00	0.00	0.00	0.00	0.00

droMoj3

ACAACAACAACA-T---G--AGTTAAACGAAATG-AACCA------------------------GTTCGTTGTTCTG-------------------------------GC------C-CAGCCCGGTTCCGATTGCGCGGACATCTCATCGTCTGA-------CCATTCGATAACCGATGAGATA-TTCACGTTATCGAGA----------------------------------------------------------------------------------	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
..................................................................................................................................................................................TGAGATG-TTCACGTTATCGAGA----------------------------------------------------------------------------------	22	1	572.00	561.00	7.00	4.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTTATCGAGA----------------------------------------------------------------------------------	22	1	406.00	382.00	16.00	7.00	1.00
..................................................................................................................................................................................TGAGATG-TTCACGTTGTCGAGA----------------------------------------------------------------------------------	22	1	205.00	203.00	2.00	0.00	0.00
................................................................................................................................CCGATTGCGCGGACATCTCATC.....................................................................................................................................	22	1	83.00	81.00	0.00	2.00	0.00
................................................................................................................................CCGATTGCGCGGACATCTCAT......................................................................................................................................	21	1	38.00	36.00	2.00	0.00	0.00
................................................................................................................................CCGATTGCGCGGACATCTCA.......................................................................................................................................	20	1	30.00	28.00	0.00	2.00	0.00
..................................................................................................................................................................................TGAGATG-TTCACGTTATCGAG...................................................................................	21	1	29.00	29.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTTGTCGAGA----------------------------------------------------------------------------------	22	1	16.00	16.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATG-TTCACGTTGTCGAG...................................................................................	21	1	13.00	13.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTTATCGAG...................................................................................	21	1	11.00	11.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATG-TTCACGTTATCGAGT----------------------------------------------------------------------------------	22	1	8.00	8.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTTATCGAGT----------------------------------------------------------------------------------	22	1	5.00	5.00	0.00	0.00	0.00
................................................................................................................................CCGATTGCGCGGACATCTCATCG....................................................................................................................................	23	1	5.00	5.00	0.00	0.00	0.00
................................................................................................................................CCGATTGCGCGGACATCTCATT.....................................................................................................................................	22	1	4.00	4.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATG-TTCGCGTTATCGAGA----------------------------------------------------------------------------------	22	1	4.00	4.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATG-TTCACGTTGTCGA....................................................................................	20	1	4.00	4.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATG-TTCACGTTATCGA....................................................................................	20	1	4.00	4.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTTATCGA....................................................................................	20	1	3.00	3.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGGTG-TTCACGTTATCGAGA----------------------------------------------------------------------------------	22	1	2.00	2.00	0.00	0.00	0.00
..................................................................................................................................................................................TGGGATG-TTCACGTTATCGAGA----------------------------------------------------------------------------------	22	1	2.00	2.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATG-TTCACGTTATCTAGA----------------------------------------------------------------------------------	22	1	2.00	2.00	0.00	0.00	0.00
................................................................................................................................CCGATTGCGCTGACATCTCATC.....................................................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATG-TTCACGTTATCGAC...................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATG-TTCACGTTATCCAG...................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
................................................................................................................................CCGATTGCGCGGTCATCTCATCG....................................................................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTTGTCGAG...................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
................................................................................................................................CCGATTGCGCGTACATCTCATC.....................................................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTTATTGAGA----------------------------------------------------------------------------------	22	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TGACATA-TTCACGTTATCGAG...................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATG-TTCACGTTATAGAGA----------------------------------------------------------------------------------	22	1	1.00	1.00	0.00	0.00	0.00
................................................................................................................................CCGATTGCGCGGACATCTCATG.....................................................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
.................................................................................................................................................................................ATGAGATG-TTCACGTTATCGA....................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TGATATA-TTCACGTTATCGAGA----------------------------------------------------------------------------------	22	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATG-TTCACGTTATCA.....................................................................................	19	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATG-TTCACGTTATTGAGA----------------------------------------------------------------------------------	22	1	1.00	1.00	0.00	0.00	0.00
................................................................................................................................CCGATTGCGCGGACATCTCAG......................................................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
.................................................................................................................................................................................ATGAGATG-TTCACGTTATCGAG...................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
................................................................................................................................CCGATTGCGCGAACATCTCATC.....................................................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTTATTGA....................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
.................................................................................................................................................................................ATGAGATA-TTCACGTTATCGAGT----------------------------------------------------------------------------------	23	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATG-TTCACGTTATGGAGA----------------------------------------------------------------------------------	22	1	1.00	1.00	0.00	0.00	0.00
.................................................................................................................................................................................ATGAGATG-TTCACGTTGTCGAGA----------------------------------------------------------------------------------	23	1	1.00	1.00	0.00	0.00	0.00
.................................................................................................................................................................................CTGAGATG-TTCACGTTATCGAGA----------------------------------------------------------------------------------	23	1	1.00	1.00	0.00	0.00	0.00
......................................................................................................................................................................................ATA-TTCATGTGATCGAGA----------------------------------------------------------------------------------	18	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................................................................................................TGCGATG-TTCACGTTATCGAGA----------------------------------------------------------------------------------	22	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATG-TTCACCTTATCGAGA----------------------------------------------------------------------------------	22	1	1.00	1.00	0.00	0.00	0.00
................................................................................................................................CCGATTGCACGGACATCTCAT......................................................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................CGAGATG-TTCACGTTATCGAGA----------------------------------------------------------------------------------	22	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TTAGATA-TTCACGTTATCGAGA----------------------------------------------------------------------------------	22	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTTATCGAGG----------------------------------------------------------------------------------	22	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCAAGTTATCGAGA----------------------------------------------------------------------------------	22	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATT-TTCACGTTATCGAGA----------------------------------------------------------------------------------	22	1	1.00	1.00	0.00	0.00	0.00
................................................................................................................................CCGATTGCGCGGTCATCTCATC.....................................................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCATGTTATCGAGA----------------------------------------------------------------------------------	22	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACATTATCGAGA----------------------------------------------------------------------------------	22	1	1.00	1.00	0.00	0.00	0.00
................................................................................................................................CCGATTGCGCGGACATCTCATCC....................................................................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATG-TTTACGTTATCGAGA----------------------------------------------------------------------------------	22	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATG-TTCAAGTTATCGAGA----------------------------------------------------------------------------------	22	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTTGACGAGA----------------------------------------------------------------------------------	22	1	1.00	1.00	0.00	0.00	0.00
.................................................................................................................................................................................ATGAGATG-TTCACGTTATCGAGT----------------------------------------------------------------------------------	23	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATA-TTCACGTTATGGAGA----------------------------------------------------------------------------------	22	1	1.00	1.00	0.00	0.00	0.00
...................................................................................................................................................................................GAGATG-TTCACGTTATCGAGA----------------------------------------------------------------------------------	21	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATG-TTCACTTTATCGAGA----------------------------------------------------------------------------------	22	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................................................................TGAGATG-TTCATGTTATCGAGA----------------------------------------------------------------------------------	22	1	1.00	1.00	0.00	0.00	0.00
.................................................................................................................................................................................ATGAGATA-TTCACGTTATCGAGA----------------------------------------------------------------------------------	23	1	1.00	1.00	0.00	0.00	0.00
................................................................................................................................CCGATTGCGCGGACATCTTC.......................................................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
................................................................................................................................CCGATTxCGCGGACATCTCATCG....................................................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
................................................................................................................................CCGATTGCGCGGACATCTCATCT....................................................................................................................................	23	1	1.00	1.00	0.00	0.00	0.00

droGri2

Size

Hit Count

Total Norm

V109
Male body

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image							None	None				None
UNAFold Image							None	None				None

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image															None	None				None
UNAFold Image															None	None				None