dme-mir-971- 12- and 20-way alignments

dme-mir-971	chrX:12956105-12956200 +	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intron

Legend:

   mature strand at position 12956164-12956185
   star strand at position 12956124-12956147
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chrX:12956090-12956215 +	TGCATGTGAGAGAA--------TTCCGTGGCTGGCA--TCGCTCGCTGTAAATTGTAATCATCAAAGCGTT-TTC--T-CAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCCGTA---CACAGAAAGAA---AACC
droSim1	chrX:9862862-9862886 +	C-------------------------------------------------------------------------------------------------------------------CAGTCCGTA---CACAGAAAGAA---AACC
droSec1	super_21:701218-701343 +	TGCATGTGAGAGAA--------TTCCGTGGCTGGCA--TCGCTCGCTGTAAATTGTAATCATCAAAGCGTT-TTC--T-CAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCCGTA---CACAGAAAGAA---AACC
droYak2	chrX:7229770-7229895 +	TGCATGTGAGAGAA--------TTCCGTGGCTGGCA--TCGCTCGCTGTAAATTGTAATCATCAAAGCGTT-TTC--T-CAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCCGTA---CACAGAAAGAA---AAAC
droEre2	scaffold_4690:13914734-13914859 -	TGCATGTGAGAGAA--------TTCCGTGGCTGGCA--TCGCCCGCTGTAAATTGTAATCATCAAAGCGTT-TTC--T-CAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCCGTA---CACAGAAAGAA---AACC
droAna3	scaffold_13117:3891784-3891909 +	TGCATGTGAGAAAA--------TTCCGTGGCTGGCA--TCGTTCACTGTAAATTGTAACCATCAAAGCGTT-TTTTAT-CAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGAGCCAGCTGGAG---CACatattaaa---aa--
dp4	chrXL_group3a:1391638-1391748 -	AGCATGTGAGAGAGCGGCTCCTTTCCCTGGACCCCA--TCGCTCGCTGTAAATTGTAATGGCCAAAGCTTT-TTTGTT-GGTAGCAGCTTGGTGTTACTTCTTACAGTGAGTGTG-------------------------------
droPer1	super_52:413307-413417 +	AGCATGTGAGAGAGCGGCTCCTTTCCCTGGACCCCA--TCGCTCGCTGTAAATTGTAATGGCCAAAGCTTT-TTTGTT-GGTAGCAGCTTGGTGTTACTTCTTACAGTGAGTGTG-------------------------------
droWil1	scaffold_181096:6691507-6691600 -	A-----------CA--------TTAAACGGCCCAAT--ACGCTCGCTGTAAATTGTAGCAATCAAAGCGTTGCCTTTTGCCTCACAGCTTGGTGTTACTTCTTACAGTGAGTGTGA--GTTTATA---AAAAATAATAG---AATT
droVir3	scaffold_12928:4279758-4279864 -	TGAA--------------------------ATGACGTCACGCCCGCTGTAAAATGTAATCATCAGAGCGTC-CTC--T-C--AACCGCTTGGTGTTACTTCTTACAGTGAGTGCGACGGCCCAAG---GTCCGACCGTA---AA-T
droMoj3	scaffold_6328:350109-350212 +	GAAATG--------------------------AACGTTGCGACCGCTGTAAATTGTAATCATCAAAGCGTC-TGC--T-A--AATCGCTTGGTGTTACTTCTTACAGTGAGCGCGGCGCTCGAAACTACAGTGAAA----------
droGri2	scaffold_14853:994418-994532 -	T--------------------------TGAATGACGTCACGCCCGCTGTAATATGTAATCATCAAAGCGTG-TATTTT----ACTCGCTTGGTGTTACTTCTTACAGTGAGTGCGACGGCCACACGTCCAGCGGAGGAGAGTGAAT

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chrX:12956090-12956215 +	NA	TGCATGTGAGAG-AA--------TTC----CG------TGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT-TT--------------CTCAGAGCCG-----------------------------------CTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC---CGTACACA--GAAAGAA---AAC-----C
droSim1	chrX:9862862-9862886 +	9	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGTC---CGTACACA--GAAAGAA---AAC-----C
droSec1	super_21:701218-701343 +	29	TGCATGTGAGAG-AA--------TTC----CG------TGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT-TT--------------CTCAGAGCCG-----------------------------------CTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC---CGTACACA--GAAAGAA---AAC-----C
droYak2	chrX:7229770-7229895 +	21	TGCATGTGAGAG-AA--------TTC----CG------TGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT-TT--------------CTCAGAGCCG-----------------------------------CTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC---CGTACACA--GAAAGAA---AAA-----C
droEre2	scaffold_4690:13914734-13914859 -	29	TGCATGTGAGAG-AA--------TTC----CG------TGGCTGGCAT--CGCCCGCTGTAAATTGTAATCATCAAAGCGTT-TT--------------CTCAGAGCCG-----------------------------------CTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC---CGTACACA--GAAAGAA---AAC-----C
droEug1	scf7180000409110:1404464-1404591 +	4	TGCATGTGAGAG-AA--------TTC----CG------TGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT-TT--------------CTCAGAGCCG-----------------------------------CTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC---CGTACACACAGAAAGAA---AAT-----A
droBia1	scf7180000298389:643181-643307 +	4	TGCATGTGAGAG-AA--------TTC----CG------TGGCTGGCAT--CGCCCGCTGTAAATTGTAATCATCAAAGCGTT-TT--T-----------CTCAGAGCCG-----------------------------------CTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC---CGTACACA--CAGAGAA---AAC-----C
droTak1	scf7180000413998:42808-42938 +	2	TGCATGTGAGAG-AA--------TTC----CG------TGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT-TT--------------CTCAGAGCCG-----------------------------------CTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC---CGTACACA--GAAAGAA---AAAAATAAC
droEle1	scf7180000490546:934549-934678 -	50	TGCATGTGAGAG-AA--------TTC----CG------TGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT-TT--T-----------CTCAGAGCCG-----------------------------------CTTGGTGTTACTTCTTACAGTGAGTGTGCCAGCC---CGTACACA--GAAAGAAATAAAA-----A
droRho1	scf7180000779914:464148-464274 -	36	TGCATGTGAGAG-AA--------TTC----CG------TGGCTGGCAT--CGTTCGCTGTAAATTGTAATCATCAAAGCGTT-TT--T-----------TTCAGAACCG-----------------------------------CTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC---CGTACACA--GAAAGAA---AAC-----T
droFic1	scf7180000454050:893108-893233 +	9	TGCATGTGAGAG-AA--------TTC----CG------TGGCTGGCAT--CGCCCGCTGTAAATTGTAATCATCAAAGCGTT-TT--------------CTCAGAGCCG-----------------------------------CTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC---CGTACACA--AAGAGAA---AAC-----C
droKik1	scf7180000302544:775471-775599 -	24	TCA----GAGCGAAA--------TTC----CT------TGGCTGGCAG--CGCACACTGTAAATTGTAATCATCAAAGCGTT-TT--T-----------CTCAGAGCCG-----------------------------------CTTGGTGTTACTTCTTACAGTGAGTGCGCCAGTA-CACGTACACACGGCAAGAA---AGA-----A
droAna3	scaffold_13117:3891784-3891909 +	11	TGCATGTGAGAA-AA--------TTC----CG------TGGCTGGCAT--CGTTCACTGTAAATTGTAACCATCAAAGCGTT-TT--TT----------ATCAGAGCCG-----------------------------------CTTGGTGTTACTTCTTACAGTGAGTGAGCCAGCT---GGAGCACA--TATTAAA---AA-------
droBip1	scf7180000396383:483175-483291 -	10	TGCATGTGAGAA-AA--------TTC----CG------TGGCTGGCAT--CGTTCACTGTAAATTGTAACCATCAAAGCGTT-TT--TT----------ATCAGAGCCG-----------------------------------CTTGGTGTTACTTCTTACAGTGAGTGAGCCAGCT---GGAGCACA---------------------
dp4	chrXL_group3a:1391638-1391748 -	58	AGCATGTGAGAG-AGCGGCTCCTTTC----CC------TGGACCCCAT--CGCTCGCTGTAAATTGTAATGGCCAAAGCTTT-TT--TG----------TTGGTAGCAG-----------------------------------CTTGGTGTTACTTCTTACAGTGAGTGTG--------------------------------------
droPer1	super_52:413307-413417 +	37	AGCATGTGAGAG-AGCGGCTCCTTTC----CC------TGGACCCCAT--CGCTCGCTGTAAATTGTAATGGCCAAAGCTTT-TT--TG----------TTGGTAGCAG-----------------------------------CTTGGTGTTACTTCTTACAGTGAGTGTG--------------------------------------
droWil1	scaffold_181096:6691507-6691601 -	433	AC------------A--------TTA----AA------CGGCCCAATA--CGCTCGCTGTAAATTGTAGCAATCAAAGCGTTGCCTTTTGC--------CTCA---CAG-----------------------------------CTTGGTGTTACTTCTTACAGTGAGTGTG--------------------------------------
droVir3	scaffold_12875:19507129-19507253 +	168	C-CGTGTGGGCC-AA--------GTTACTGGG------TCTGTGGCAT--GTTGCCCTATTAACTGTCGGCTGCCAGGCGCA-TA--A-----------TTTATGGCCGTATCAAGTCGTCTGACAGGCAACCAGAGTCAGCTCCATGTTGTTACTC-----------------------------------------------------
droMoj3	scaffold_6500:10192550-10192669 -	803	TGGGTTTTTGGG-TA--------TTT----TTGGTACGCGGCTTGCG---CG-CTGCTGAATATTTCAAGCATTTAATTGTA-AA--TTA-CACATACGCCCAGTGTGC-------------------------------G---C-TGTATGCATTTTTTACAATT-GTTTGCCAGT---------------------------------
droGri2	scaffold_14853:994421-994540 -	867	CACG---------AA--------C-------T------TGAATGACGTCACGCCCGCTGTAATATGTAATCATCAAAGCGTG-TATTTTA---------C------TCG-----------------------------------CTTGGTGTTACTTCTTACAGTGAGTGCGACGGCCACACGTCCAGC--GGAGGAG---AGT-----G

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

TGCATGTGAGAGAA--------TTCCGTGGCTGGCA--TCGCTCGCTGTAAATTGTAATCATCAAAGCGTT-TTC--T-CAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCCGTA---CACAGAAAGAA---AACC

Size

Hit Count

Total Norm

droSim1

C-------------------------------------------------------------------------------------------------------------------CAGTCCGTA---CACAGAAAGAA---AACC

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

droSec1

TGCATGTGAGAGAA--------TTCCGTGGCTGGCA--TCGCTCGCTGTAAATTGTAATCATCAAAGCGTT-TTC--T-CAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCCGTA---CACAGAAAGAA---AACC	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
........................................................................................TTGGTGTTACTTCTTGCAGTGA....................................	22	1	230.00	10.00	45.00	175.00
........................................................................................TTGGTGTTACTTCTTACAGTGA....................................	22	1	171.00	0.00	126.00	45.00
........................................................................................TTGGTGTTACTTCTTGCAGTG.....................................	21	1	32.00	1.00	1.00	30.00
............................................GCTGTAAATTGTAATCATCA..................................................................................	20	1	27.00	1.00	1.00	25.00
............................................GCTGTAAATTGTAATCATCAA.................................................................................	21	1	12.00	0.00	0.00	12.00
........................................................................................TTGGTGTTACTTCTTGCGGTGA....................................	22	1	11.00	1.00	1.00	9.00
........................................................................................TTGGTGTTACTTCTTGCAGT......................................	20	1	8.00	0.00	1.00	7.00
........................................................................................TTGGTGTTACTTCTTGCAGTGT....................................	22	1	8.00	0.00	0.00	8.00
............................................GCTGTAAATTGTAATCATCAAA................................................................................	22	1	7.00	0.00	0.00	7.00
........................................................................................TTGGTGTTACTTCTTACAGTG.....................................	21	1	6.00	0.00	5.00	1.00
........................................................................................TTGGTGTTACTTCTTGCAGTGAA...................................	23	1	5.00	0.00	0.00	5.00
............................................GCTGTAAATTGTAATCATC...................................................................................	19	1	5.00	0.00	0.00	5.00
.......................................................................................CTTGGTGTTACTTCTTACAGTGA....................................	23	1	5.00	0.00	5.00	0.00
............................................GCTGTAAATTGTAATCATCAAAGC..............................................................................	24	1	4.00	0.00	1.00	3.00
........................................................................................TTGGTGTTGCTTCTTGCAGTGA....................................	22	1	4.00	0.00	0.00	4.00
........................................................................................TTGGTGTTACTTCTTGTAGTGA....................................	22	1	4.00	0.00	4.00	0.00
........................................................................................TTGGTGTTACTTCTTGCGGTG.....................................	21	1	3.00	1.00	0.00	2.00
.......................................................................................CTTGGTGTTACTTCTTGCAGTGA....................................	23	1	3.00	0.00	1.00	2.00
........................................................................................TTGGTGTTACTTCTTGCAGTGAT...................................	23	1	3.00	0.00	1.00	2.00
............................................GCTGTAAATTGTAATCATCAAAG...............................................................................	23	1	2.00	0.00	0.00	2.00
........................................................................................TTGGTGTTACTTCTTACGGTGA....................................	22	1	2.00	0.00	2.00	0.00
........................................................................................TTGGTGTTACTTCTTATAGTGA....................................	22	1	2.00	0.00	1.00	1.00
........................................................................................TTGCTGTTACTTCTTGCAGTGA....................................	22	1	2.00	0.00	0.00	2.00
........................................................................................TTGGTGTTACTTCTTACAGTGT....................................	22	1	2.00	0.00	2.00	0.00
.........................................................................................TTGTGTTACTTCTTGCAGTGA....................................	21	1	2.00	0.00	1.00	1.00
........................................................................................TTGGTGTTATTTCTTGCAGTGA....................................	22	1	2.00	0.00	2.00	0.00
...........................................CGCTGTAAATTGTAATCATCAA.................................................................................	22	1	1.00	0.00	0.00	1.00
........................................................................................TTGGTGTTTCTTCTTGCAGTGA....................................	22	1	1.00	0.00	1.00	0.00
............................................GCTGTAAATTGTAATCATCAAAGCG.............................................................................	25	1	1.00	0.00	1.00	0.00
........................................................................................TTGGTGTTACTTCTTGCGGT......................................	20	1	1.00	0.00	0.00	1.00
........................................................................................TTGGTGTTACTTCTTGCAGTTA....................................	22	1	1.00	0.00	1.00	0.00
......................TTCCGTGGCTGGCA--TCGCTC......................................................................................................	20	1	1.00	0.00	1.00	0.00
........................................................................................TTGGTGTTACTTCTTACAGT......................................	20	1	1.00	0.00	0.00	1.00
........................................................................................TTGGTGTTACTTCTCGCAGTG.....................................	21	1	1.00	0.00	0.00	1.00
........................................................................................TTGGTGTTACATCTTACAGTGA....................................	22	1	1.00	0.00	1.00	0.00
........................................................................................TCGGTGTTACTTCTTGCAGTG.....................................	21	1	1.00	0.00	0.00	1.00
.........................................................................................TTGTGTTACTTCTTACAGTGA....................................	21	1	1.00	0.00	1.00	0.00
........................................................................................TTGGTGCTACTTCTTGCAGTG.....................................	21	1	1.00	0.00	0.00	1.00
............................................GCTGTAAATTGTAATAATCAAAGC..............................................................................	24	1	1.00	0.00	1.00	0.00
........................................................................................TTGGTGTTACTTCTTACACTGA....................................	22	1	1.00	0.00	0.00	1.00
........................................................................................TTGGTGTTACTTCTTGCATTGA....................................	22	1	1.00	0.00	0.00	1.00
........................................................................................TTGGTGTTCCTTCTTGCAGTGA....................................	22	1	1.00	0.00	0.00	1.00
........................................................................................TTGGTGTTGCTTCTTACAGTG.....................................	21	1	1.00	0.00	0.00	1.00
........................................................................................TTGGTGCTACTTCTTACAGTGA....................................	22	1	1.00	0.00	1.00	0.00
.......................................................TAATCATCAAAACGTT-GT........................................................................	18	1	1.00	0.00	1.00	0.00
...........................................................................................CTGTTACTTCTTGCAGTGA....................................	19	1	1.00	0.00	0.00	1.00
........................................................................................TTGGTGTTATTTCTTACAGTGA....................................	22	1	1.00	0.00	1.00	0.00
........................................................................................TTGGTGTTACTTCTTACTGTGA....................................	22	1	1.00	0.00	1.00	0.00
........................................................................................TTGGTTTTACTTCTTGCAGTGA....................................	22	1	1.00	0.00	0.00	1.00
........................................................................................TTGGTGTTACTTCTTGCAGTGAC...................................	23	1	1.00	0.00	1.00	0.00
........................................................................................TTGGTGTTACTTCTTACAGCGA....................................	22	1	1.00	0.00	1.00	0.00
........................................................................................TTTGTGTTACTTCTTGCAGTGA....................................	22	1	1.00	0.00	0.00	1.00
.......................................................................................CTTGGTGTTACTTCTTGCAGT......................................	21	1	1.00	0.00	0.00	1.00
.......................................................................................CTTGGTGTTACTTCTTACAGTG.....................................	22	1	1.00	0.00	1.00	0.00
............................................GCTGTAAATTTTAATCCTC...................................................................................	19	1	1.00	0.00	0.00	1.00
........................................................................................TTGGTGTTACTTTTTGCAGTGA....................................	22	1	1.00	0.00	1.00	0.00
........................................................................................TTGxxGTTACTTCTTACAGTGA....................................	20	1	1.00	0.00	1.00	0.00
........................................................................................TTGGTGTTACTTCTTGCAGTGAG...................................	23	1	1.00	0.00	1.00	0.00
.......................................................................................CTTGGTGTTATTTCTTGCAGTGA....................................	23	1	1.00	0.00	1.00	0.00
........................................................................................TTGGTCTTACTTCTTGCAGTGA....................................	22	1	1.00	0.00	0.00	1.00
........................................................................................TTGGTGTTACTTCTTACAGTGG....................................	22	1	1.00	0.00	1.00	0.00
........................................................................................TTGGTGTTACTTTTTACAGTGA....................................	22	1	1.00	0.00	1.00	0.00

droYak2

TGCATGTGAGAGAA--------TTCCGTGGCTGGCA--TCGCTCGCTGTAAATTGTAATCATCAAAGCGTT-TTC--T-CAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCCGTA---CACAGAAAGAA---AAAC	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
........................................................................................TTGGTGTTACTTCTTGCAGTGA....................................	22	1	151.00	25.00	6.00	1.00	15.00	104.00
........................................................................................TTGGTGTTACTTCTTACAGTGA....................................	22	1	78.00	63.00	0.00	2.00	2.00	11.00
........................................................................................TTGGTGTTACTTCTTGCGGTGA....................................	22	1	35.00	2.00	3.00	2.00	3.00	25.00
............................................GCTGTAAATTGTAATCATCAAAG...............................................................................	23	1	30.00	1.00	0.00	0.00	0.00	29.00
............................................GCTGTAAATTGTAATCATCAAAGC..............................................................................	24	1	29.00	0.00	1.00	0.00	0.00	28.00
........................................................................................TTGGTGTTACTTCTTGCAGTGG....................................	22	1	20.00	0.00	0.00	0.00	0.00	20.00
........................................................................................TTGGTGTTACTTCTTGCAGTG.....................................	21	1	11.00	1.00	1.00	1.00	6.00	2.00
......................TTCCGTGGCTGGCA--TCGCTC......................................................................................................	20	1	9.00	0.00	0.00	0.00	0.00	9.00
............................................GCTGTAAATTGTAATCATCA..................................................................................	20	1	9.00	0.00	5.00	0.00	4.00	0.00
........................................................................................TTGGTGTTACTTCTTGCGGTG.....................................	21	1	7.00	0.00	2.00	0.00	2.00	3.00
.............A--------TTCCGTGGCTGGCA--TCGCTC......................................................................................................	21	1	5.00	0.00	0.00	0.00	0.00	5.00
.......................................................................................CTTGGTGTTACTTCTTGCAGTGA....................................	23	1	3.00	0.00	0.00	0.00	0.00	3.00
............................................GCTGTAAATTGTAATCATC...................................................................................	19	1	3.00	0.00	0.00	0.00	0.00	3.00
............................................GCTGTAAATTGTAATCATCAAAGCG.............................................................................	25	1	2.00	1.00	0.00	0.00	0.00	1.00
........................................................................................TTGGTGTTACTTCTTACAGTGAA...................................	23	1	2.00	1.00	0.00	0.00	0.00	1.00
........................................................................................TTGGTGTTACTTCTTGCAGTGAA...................................	23	1	2.00	0.00	0.00	0.00	0.00	2.00
........................................................................................TTGGTGTTACTTCTTGCGG.......................................	19	1	2.00	0.00	0.00	0.00	0.00	2.00
........................................................................................TTGGTGTTCCTTCTTACAGTGA....................................	22	1	2.00	1.00	0.00	0.00	0.00	1.00
........................................................................................TTGGTGTTACTTCTTGCAGTT.....................................	21	1	2.00	0.00	1.00	0.00	1.00	0.00
........................................................................................TTGGAGTTACTTCTTACAGTGA....................................	22	1	2.00	1.00	0.00	0.00	1.00	0.00
........................................................................................TTGGTGTTACTTCTTACAGTGG....................................	22	1	2.00	1.00	0.00	0.00	0.00	1.00
........................................................................................TTGGTGTTACTTCTTGCAGTGAT...................................	23	1	2.00	1.00	1.00	0.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTGCCGTGA....................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
.......................................................................................................................TACGTA---CACAGAGAGAA---AAAC	21	1	1.00	1.00	0.00	0.00	0.00	0.00
............................................GCTGTAAATTGTAATCGTCA..................................................................................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
............................................GCTGTAAATTGTAATCATCCAAGCG.............................................................................	25	1	1.00	0.00	0.00	0.00	1.00	0.00
............................................GCTGCAAATTGTAATCATCAAAG...............................................................................	23	1	1.00	0.00	0.00	0.00	0.00	1.00
............................................GCTGTAAATTGTAATCATCAA.................................................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................TTGGTGTTACTTCTTGCAGTTA....................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
............................................GCGGTAAATTGTAATCATCAGA................................................................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................TTGGTGTTACTTCTTGCAGCGA....................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
............................................GCTGAAAATTGTAATCATCAAAG...............................................................................	23	1	1.00	0.00	0.00	0.00	0.00	1.00
........................................................................................TTGGTGTTACTTCTTACGGTGA....................................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
........................................................................................TTGGCGTTACTTCTTGCAGTGA....................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTGCATTGA....................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................................................CTTGGTGTTACTTCTTGCAGTGT....................................	23	1	1.00	0.00	1.00	0.00	0.00	0.00
............................................GATGTAAATTGTAATCATCA..................................................................................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................CTGGTGTTACTTCTTACAGTGA....................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
.......................................................................................CTTGGTGTTACTTCTTACAGTGA....................................	23	1	1.00	1.00	0.00	0.00	0.00	0.00
......................................................................................TCTTGGTGTTACTTCTTGCAGTGA....................................	24	1	1.00	1.00	0.00	0.00	0.00	0.00
.......................................................................................CTTGGTGTTACTTCTTGCGGTGA....................................	23	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................TTGGGGTTACTTCTTGCAGTGA....................................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
........................................................................................TTGGTGTTACTTCTTTCAGTGA....................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
......................TTCCGTAGCTGGCA--TCGCTC......................................................................................................	20	1	1.00	0.00	0.00	0.00	0.00	1.00
......................TTCCGTGGCTGGCA--TCCCTC......................................................................................................	20	1	1.00	0.00	0.00	0.00	0.00	1.00
........................................................................................TTGGTGTTACTTCTTACATTGA....................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
.......................TCCGTGGCTGGCA--TCGCTC......................................................................................................	19	1	1.00	0.00	0.00	0.00	0.00	1.00
........................................................................................TTAGTGTTACTTCTTACAGTGA....................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
............AA--------TTCCGTGGCTGGGA--TCGCTC......................................................................................................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
........................................................................................TTGGTGTTACTTCTTGCAG.......................................	19	1	1.00	0.00	0.00	0.00	0.00	1.00
............................................GCTGTACATTGTAATCCTCAAAGC..............................................................................	24	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................TTGGTGTTACTTCTTGCAGTGT....................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00

droEre2

TGCATGTGAGAGAA--------TTCCGTGGCTGGCA--TCGCCCGCTGTAAATTGTAATCATCAAAGCGTT-TTC--T-CAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCCGTA---CACAGAAAGAA---AACC	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
........................................................................................TTGGTGTTACTTCTTGCAGTGA....................................	22	1	526.00	22.00	16.00	0.00	488.00
........................................................................................TTGGTGTTACTTCTTACAGTGA....................................	22	1	233.00	66.00	1.00	87.00	79.00
........................................................................................TTGGTGTTACTTCTTGCAGTG.....................................	21	1	110.00	1.00	7.00	0.00	102.00
........................................................................................TTGGTGTTACTTCTTGCGGTGA....................................	22	1	68.00	0.00	1.00	0.00	67.00
............................................GCTGTAAATTGTAATCATCA..................................................................................	20	1	44.00	0.00	6.00	0.00	38.00
............................................GCTGTAAATTGTAATCATCAAAG...............................................................................	23	1	25.00	1.00	2.00	0.00	22.00
............................................GCTGTAAATTGTAATCATCAA.................................................................................	21	1	22.00	0.00	0.00	0.00	22.00
............................................GCTGTAAATTGTAATCATCAAA................................................................................	22	1	21.00	0.00	0.00	0.00	21.00
........................................................................................TTGGTGTTACTTCTTGCGGTG.....................................	21	1	20.00	0.00	0.00	0.00	20.00
........................................................................................TTGGTGTTACTTCTTGCAGTGT....................................	22	1	18.00	1.00	0.00	0.00	17.00
........................................................................................TTGGTGTTACTTCTTACAGTTA....................................	22	1	16.00	6.00	1.00	7.00	2.00
............................................GCTGTAAATTGTAATCATCAAAGC..............................................................................	24	1	15.00	1.00	0.00	0.00	14.00
........................................................................................TTGGTGTTGCTTCTTGCAGTGA....................................	22	1	12.00	0.00	1.00	0.00	11.00
........................................................................................TTGGTGTTACTTCTTACAGTG.....................................	21	1	12.00	5.00	0.00	3.00	4.00
........................................................................................TTGGTGTTACTTCTTGCAGTGAA...................................	23	1	11.00	0.00	0.00	0.00	11.00
........................................................................................TTGGTGTTACTTCTTGTAGTGA....................................	22	1	7.00	0.00	2.00	0.00	5.00
........................................................................................TTGGTGTTACTTCTTGCAGTGG....................................	22	1	6.00	0.00	0.00	0.00	6.00
........................................................................................TTTGTGTTACTTCTTGCAGTGA....................................	22	1	6.00	0.00	0.00	0.00	6.00
........................................................................................TTGGTGTTACTTCTTGCAGT......................................	20	1	6.00	0.00	0.00	0.00	6.00
.......................................................................................CTTGGTGTTACTTCTTGCAGTGA....................................	23	1	5.00	0.00	0.00	0.00	5.00
........................................................................................TTGGTGTTACTTATTGCAGTGA....................................	22	1	5.00	0.00	0.00	0.00	5.00
........................................................................................TTGGTGTTACTTCTTACAGTGT....................................	22	1	5.00	1.00	1.00	3.00	0.00
........................................................................................TTGGTGTTACTTCTTGCAGTGAT...................................	23	1	5.00	0.00	1.00	0.00	4.00
........................................................................................TTGGTGTTACTTCTTGAAGTGA....................................	22	1	4.00	0.00	0.00	0.00	4.00
........................................................................................TTGGTGTTACTTCTTGCAGTTA....................................	22	1	4.00	1.00	0.00	0.00	3.00
........................................................................................TTGGTGTTACTTCTTGCGGT......................................	20	1	4.00	0.00	0.00	0.00	4.00
........................................................................................TTGGTGTTACTTCTTTCAGTGA....................................	22	1	4.00	2.00	0.00	0.00	2.00
........................................................................................TTGGTGTTACTTCTTACATTGA....................................	22	1	4.00	1.00	0.00	3.00	0.00
........................................................................................TTGGTGTTACTTCTTGCAGTGAG...................................	23	1	4.00	0.00	0.00	0.00	4.00
........................................................................................TTGGGGTTACTTCTTGCAGTGA....................................	22	1	3.00	0.00	0.00	0.00	3.00
...........................................................................................TTGTTACTTCTTGCAGTGA....................................	19	1	3.00	0.00	0.00	0.00	3.00
........................................................................................TTGGTTTTACTTCTTGCAGTGA....................................	22	1	3.00	0.00	0.00	0.00	3.00

droAna3

TGCATGTGAGAAAA--------TTCCGTGGCTGGCA--TCGTTCACTGTAAATTGTAACCATCAAAGCGTT-TTTTAT-CAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGAGCCAGCTGGAG---CACatattaaa---aa--	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
........................................................................................TTGGTGTTACTTCTTGCAGTGA....................................	22	1	137.00	5.00	117.00	12.00	3.00
........................................................................................TTGGTGTTACTTCTTACAGTGA....................................	22	1	127.00	4.00	101.00	10.00	12.00
........................................................................................TTGGTGTTGCTTCTTGCAGTGA....................................	22	1	50.00	2.00	45.00	3.00	0.00
........................................................................................TTGGTGTTACTTCTTGCAGTG.....................................	21	1	45.00	1.00	40.00	3.00	1.00
........................................................................................TTGGTGTTACTTCTTACAGTG.....................................	21	1	22.00	1.00	19.00	1.00	1.00
........................................................................................TTGGTGTTACTTCTTGCAGT......................................	20	1	16.00	1.00	15.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTGCAGTGT....................................	22	1	15.00	0.00	13.00	2.00	0.00
............................................ACTGTAAATTGTAACCATCAAAGC..............................................................................	24	1	13.00	0.00	12.00	1.00	0.00
........................................................................................TTGGTGTTACTTCTTGCGGTGA....................................	22	1	12.00	0.00	12.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTGCAGTGAA...................................	23	1	7.00	0.00	5.00	2.00	0.00
............................................ACTGTAAATTGTAACCATCAAAG...............................................................................	23	1	5.00	0.00	5.00	0.00	0.00
............................................ACTGTAAATTGTAACCATCAAA................................................................................	22	1	3.00	0.00	3.00	0.00	0.00
............................................ACTGTAAATTGTAACCATCA..................................................................................	20	1	3.00	0.00	3.00	0.00	0.00
........................................................................................TTTGTGTTACTTCTTGCAGTGA....................................	22	1	3.00	1.00	2.00	0.00	0.00
.......................................................................................CTTGGTGTTACTTCTTACAGTG.....................................	22	1	3.00	0.00	1.00	1.00	1.00
............................................ACTGTAGATTGTAACCATCAAA................................................................................	22	1	2.00	0.00	2.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTGCAGTA.....................................	21	1	2.00	1.00	1.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTACAGT......................................	20	1	2.00	0.00	1.00	1.00	0.00
........................................................................................TTGGTGTTACTTCTTGCAG.......................................	19	1	2.00	0.00	2.00	0.00	0.00
........................................................................................TTGGTGTTGCTTCTTGCAGT......................................	20	1	2.00	0.00	2.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTACATTGA....................................	22	1	2.00	0.00	1.00	0.00	1.00
........................................................................................TTGGTGTTAATTCTTGCAGTGA....................................	22	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TTGGGGTTACTTCTTGCAGTGA....................................	22	1	1.00	0.00	0.00	1.00	0.00
........................................................................................TTAGTGTTACTTCTTGCAGTGA....................................	22	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTGCATTG.....................................	21	1	1.00	0.00	1.00	0.00	0.00
............................................ACTGTAAATTGTAACCATCAA.................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TTTGTGTTACTTCTTGCAGTG.....................................	21	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTACAGTA.....................................	21	1	1.00	0.00	0.00	0.00	1.00
..........................................................................................................GCGAGTGAGGCAGCTGGAG---C.................	20	1	1.00	1.00	0.00	0.00	0.00
............................................GCTGTAAATTGTAACCATCAA.................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TTGGGGTTACTTCTTGCAGTG.....................................	21	1	1.00	0.00	0.00	1.00	0.00
........................................................................................TTGGTGTTACTTCTTACAGTGC....................................	22	1	1.00	0.00	0.00	0.00	1.00
........................................................................................TTGGTGTTACCTCTTGCAGTG.....................................	21	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTACAGTGT....................................	22	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TTGGTGTTACTTATTGCAGTGA....................................	22	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTGAAGTGA....................................	22	1	1.00	0.00	1.00	0.00	0.00
........................................................................................CTGGTGTTACTTCTTGCAGTG.....................................	21	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTACAGTGAAA..................................	24	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTACGGTGA....................................	22	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TTGGTTTTACTTCTTACAGTGA....................................	22	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TAGGTGTTACTTCTTGCAGTGA....................................	22	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TCGTTGTTACTTCTTACAGTGA....................................	22	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TGGGTGTTACTTCTTACAGTGA....................................	22	1	1.00	0.00	0.00	1.00	0.00
........................................................................................TTGGTGGTACTTCTTACAGTGAA...................................	23	1	1.00	0.00	0.00	0.00	1.00
........................................................................................TCGGTGTTACTTCTTACAGTGA....................................	22	1	1.00	0.00	0.00	1.00	0.00
........................................................................................TTGGTGTTACTTCTTGCAGTGAC...................................	23	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTACACTGA....................................	22	1	1.00	0.00	0.00	0.00	1.00
............................................ACTGTAAATTGTAACCATCAAAGCT.............................................................................	25	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................GGTGTTACTTCTTGCAGTGA....................................	20	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TTGGTTTTACTTCTTGCAGTGA....................................	22	1	1.00	0.00	1.00	0.00	0.00
............................................ACTGTAAATTGTAACCATCAAAGT..............................................................................	24	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTGTAGTGA....................................	22	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TTGGTGTTACTTCxTGCAGTGA....................................	21	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTGCAGTGAAT..................................	24	1	1.00	0.00	1.00	0.00	0.00
.........................................................................................TGGTGTTACTTCTTACAGTGA....................................	21	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTGCAGTGATT..................................	24	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTACAGTTAA...................................	23	1	1.00	0.00	0.00	0.00	1.00
.......................................................................................CTTGGTGTTACTTCTTACAGTGT....................................	23	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TTGGTGTCACTTCTTACAGTGA....................................	22	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTGCAGTCA....................................	22	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTGCAATGA....................................	22	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TTGGAGTTACTTCTTACAGTGA....................................	22	1	1.00	0.00	0.00	1.00	0.00
......................................................................................................TACACTGACTGAGCCAGC..........................	18	1	1.00	1.00	0.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTGCGGTG.....................................	21	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTGCAGCGA....................................	22	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTATAGTGA....................................	22	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTGCAGTTA....................................	22	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTTCAGTGT....................................	22	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TTTGTGTTACTTCTTACAGTGA....................................	22	1	1.00	0.00	1.00	0.00	0.00
............................................ACTGTAAATTGTxATCATCA..................................................................................	19	1	1.00	0.00	1.00	0.00	0.00

dp4

AGCATGTGAGAGAGCGGCTCCTTTCCCTGGACCCCA--TCGCTCGCTGTAAATTGTAATGGCCAAAGCTTT-TTTGTT-GGTAGCAGCTTGGTGTTACTTCTTACAGTGAGTGTG-------------------------------	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
........................................................................................TTGGTGTTACTTCTTACAGTGA....................................	22	1	149.00	5.00	109.00	35.00	0.00
............................................GCTGTAAATTGTAATGGCCAAAGC..............................................................................	24	1	14.00	0.00	10.00	4.00	0.00
........................................................................................TTGGTGTTACTTCTTACAGTGT....................................	22	1	11.00	0.00	3.00	8.00	0.00
........................................................................................TTGGTGTTACTTCTTACAGTG.....................................	21	1	9.00	1.00	2.00	6.00	0.00
.......................................................................................CTTGGTGTTACTTCTTACAGTGA....................................	23	1	8.00	0.00	6.00	2.00	0.00
............................................GCTGTAAATTGTAATGGCCAAAG...............................................................................	23	1	5.00	0.00	0.00	5.00	0.00
............................................GCTGTAAATTGTAATGGCCAAA................................................................................	22	1	5.00	0.00	0.00	5.00	0.00
............................................GCTGTAAATTGTAATGGCCA..................................................................................	20	1	4.00	0.00	0.00	4.00	0.00
........................................................................................TTGGAGTTACTTCTTACAGTG.....................................	21	1	2.00	0.00	1.00	1.00	0.00
........................................................................................TTGGAGTTACTTCTTACAGTGA....................................	22	1	2.00	0.00	2.00	0.00	0.00
............................................GCTGTAAATTGTAATGGCCAA.................................................................................	21	1	2.00	0.00	0.00	2.00	0.00
........................................................................................TTGGTGTTACTTCTTACAGGGA....................................	22	1	2.00	0.00	2.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTACAGT......................................	20	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TTGGGGTTACTTCTCACAGTGA....................................	22	1	1.00	0.00	0.00	1.00	0.00
........................................................................................TTGGTGTTACTTTTTATAGTGA....................................	22	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TTGGTGTTATTTCTTTCAGTGA....................................	22	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTACAG.......................................	19	1	1.00	0.00	0.00	1.00	0.00
........................................................................................TTGGTGTTACTTCTTCCAGTGA....................................	22	1	1.00	0.00	0.00	1.00	0.00
........................................................................................TTGGTGTTACTTCTTACACTG.....................................	21	1	1.00	0.00	0.00	1.00	0.00
........................................................................................TTGGTGTTGCTTCTTACAGTGA....................................	22	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTACAGTGC....................................	22	1	1.00	0.00	0.00	1.00	0.00
............................................GCTGTAAATTGTAATGGCCAAAGCT.............................................................................	25	1	1.00	0.00	1.00	0.00	0.00
.......................................................................................CTTGGTGTTACTTCTTACAGT......................................	21	1	1.00	0.00	1.00	0.00	0.00
............................................GCGGTAAATTGTAATGGCCAA.................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
........................................................................................TTAGTGTTACTTCTTACAGTGA....................................	22	1	1.00	0.00	0.00	1.00	0.00
............................................GCTGTAAATTGCAATGGCCAAAGC..............................................................................	24	1	1.00	0.00	1.00	0.00	0.00
............................................GCTGTAAATTGTTATGGCCAAAGT..............................................................................	24	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TTGGTGTTACTTCGTACAGTGA....................................	22	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTATAGTGA....................................	22	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TTGGTGTTACGTCTTACAGTGA....................................	22	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TTGGTATTACTTCTTACAGTGA....................................	22	1	1.00	0.00	0.00	1.00	0.00
............................................................................................TGTTACTTCTTACAGTGA....................................	18	1	1.00	0.00	1.00	0.00	0.00
............................................GCTGTAAATTGTAATGTCCAAAGC..............................................................................	24	1	1.00	0.00	1.00	0.00	0.00
............................................GCTGTAACTTGTAATGGCCAAAGC..............................................................................	24	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TGGGCGTTACTTCTTACAGTGA....................................	22	1	1.00	0.00	1.00	0.00	0.00
.......................................................................................CTTGGTGTTACTTGTTACAGTGC....................................	23	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TTAATGTTACTTCTTACAGTG.....................................	21	1	1.00	0.00	1.00	0.00	0.00
............................................GCGGTAAATTGTAATGGACA..................................................................................	20	1	1.00	0.00	0.00	1.00	0.00
........................................................................................TTGATTTTACTTCTTACAGTGA....................................	22	1	1.00	0.00	1.00	0.00	0.00
............................................GCTGTAAATTTTAATGGCCAAAAC..............................................................................	24	1	1.00	0.00	1.00	0.00	0.00
.............................................CTGTAAATTGTAATGGCCAAAGCT.............................................................................	24	1	1.00	0.00	0.00	1.00	0.00
........................................................................................TTGGTGTTACTTCTTGCAGTGAA...................................	23	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TTGGCGTTACTTCTTACAGTGA....................................	22	1	1.00	0.00	0.00	1.00	0.00
........................................................................................TTGGTGTTACTTATTACAGTGA....................................	22	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TGGGTGTTACTTCTTACAGTGA....................................	22	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TTGGTGTCACTTCTTACAGTGA....................................	22	1	1.00	0.00	1.00	0.00	0.00
............................................GCTGGAAATTGGAATGGCCAAAG...............................................................................	23	1	1.00	0.00	0.00	1.00	0.00
.......................................................................................CTTGGTGTTACTTCTTACAGTG.....................................	22	1	1.00	0.00	1.00	0.00	0.00

droPer1

AGCATGTGAGAGAGCGGCTCCTTTCCCTGGACCCCA--TCGCTCGCTGTAAATTGTAATGGCCAAAGCTTT-TTTGTT-GGTAGCAGCTTGGTGTTACTTCTTACAGTGAGTGTG-------------------------------	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
........................................................................................TTGGTGTTACTTCTTACAGTGA....................................	22	1	169.00	4.00	46.00	53.00	42.00	24.00
........................................................................................TTGGTGTTACTTCTTACAGTG.....................................	21	1	17.00	1.00	4.00	9.00	3.00	0.00
............................................GCTGTAAATTGTAATGGCCAAAG...............................................................................	23	1	9.00	0.00	0.00	5.00	4.00	0.00
............................................GCTGTAAATTGTAATGGCCAAAGCT.............................................................................	25	1	9.00	0.00	1.00	2.00	6.00	0.00
............................................GCTGTAAATTGTAATGGCCAAA................................................................................	22	1	7.00	0.00	0.00	3.00	4.00	0.00
............................................GCTGTAAATTGTAATGGCCA..................................................................................	20	1	6.00	0.00	0.00	2.00	4.00	0.00
....................................................................TTT-TTTGTT-GGTAGCAGC..........................................................	18	1	6.00	0.00	0.00	0.00	3.00	3.00
........................................................................................TTGGTGTTACTTCTTACAGTGG....................................	22	1	5.00	0.00	0.00	0.00	0.00	5.00
.......................................................................................CTTGGTGTTACTTCTTACAGTGA....................................	23	1	5.00	0.00	1.00	3.00	1.00	0.00
........................................................................................TTGGTGTTACTTCTTACAGTGT....................................	22	1	5.00	0.00	0.00	2.00	3.00	0.00
......................TTCCCTGGACCCCA--TCGCTC......................................................................................................	20	1	4.00	0.00	0.00	2.00	2.00	0.00
............................................GCTGTAAATTGTAATGGCCAA.................................................................................	21	1	3.00	0.00	0.00	0.00	3.00	0.00
.......................................................................................CTTGGTGTTACTTCTTACAGT......................................	21	1	3.00	0.00	0.00	1.00	1.00	1.00
..............................................TGTAAATTGTAATGGCCAAAGCT.............................................................................	23	1	3.00	0.00	0.00	1.00	2.00	0.00
.......................................................................................CTTGGTGTTACTTCTTACAGTG.....................................	22	1	3.00	1.00	0.00	2.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTACAGTTA....................................	22	1	2.00	0.00	1.00	0.00	1.00	0.00
.GCATGTGGGAGAGGGGCTC..............................................................................................................................	19	1	2.00	2.00	0.00	0.00	0.00	0.00
............................................GCTGTAAATTGTAATGGCCAAAT...............................................................................	23	1	2.00	0.00	0.00	0.00	2.00	0.00
........................................................................................TTGGGGTTACTTCTTACAGTGA....................................	22	1	2.00	0.00	2.00	0.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTACAGT......................................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
...............................................................................................TACTTCxTACAGTGACTGT................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
........................................................................................TTGATGTTACTTCTTACAGTTA....................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................TTGGTGTTACTTCTTACATTGT....................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
......................TTCCCTGGACCCCA--TCCCGC......................................................................................................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
............................................GCTGTAAATTGGAATGGCAAA.................................................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................TTGGTGCTACTTCTCACAGTGA....................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................TTGGTGTTACTTCTTACGGTGA....................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
............................................GCTGTAAATTGCAATGGCCAAAG...............................................................................	23	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................................................CTTGGGGTTACTTCTTACAGTGT....................................	23	1	1.00	0.00	0.00	0.00	1.00	0.00
............................................GCTGTAAATTGCAATGGCCCAA................................................................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
............................................GCTGTAAATTGTAATGCCCAAAG...............................................................................	23	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................TGGGTGTTAATTCTTACAGTG.....................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
............................................GCTGTAAATTGTAATGGCAAA.................................................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................GTGGTGTTACTTCTTACAGTGA....................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................TTGGTGTTACTTCTTACATTGA....................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
............................................GCTGTAAATTGTAATGGCC...................................................................................	19	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................................................CTTGGTGTTACTTCTTACAGTGT....................................	23	1	1.00	0.00	1.00	0.00	0.00	0.00
............................................GCTGTAAATTGTAATGGCCCAA................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTACAGTAA....................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
............................................GCTGTAAATTGTAATGGCCAAT................................................................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTACAGTGAA...................................	23	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................TTGGTGTTACCTCTTACCGTGA....................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
............................................GCTGTAGATTGTAATGGCCAAAGC..............................................................................	24	1	1.00	0.00	0.00	0.00	1.00	0.00
............................................GCTGTTAATTGTAATGGCCA..................................................................................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................TCCCTGGACCCCA--TCGCTC......................................................................................................	19	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................TTGGTGCTACTTCTTACAGTGA....................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................TTGGTGCTAGTTCTTACAGTGA....................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................TTGGTGTTACTTGTTACAGTGA....................................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
....................................................................TTT-TTTGTT-GGTATCAGC..........................................................	18	2	0.50	0.00	0.00	0.50	0.00	0.00
........................................................................................TTGGTGGTACTTCTTACAGTGA....................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
.........................................................................................TGGTGTTACTTCTTACAGTGA....................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTACCGTGA....................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00

droWil1

A-----------CA--------TTAAACGGCCCAAT--ACGCTCGCTGTAAATTGTAGCAATCAAAGCGTTGCCTTTTGCCTCACAGCTTGGTGTTACTTCTTACAGTGAGTGTGA--GTTTATA---AAAAATAATAG---AATT	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
........................................................................................TTGGTGTTACTTCTTACAGTGA....................................	22	1	4756.00	8.00	540.00	3777.00	431.00
........................................................................................TTGGTGTTACTTCTTACAGTG.....................................	21	1	440.00	0.00	28.00	399.00	13.00
........................................................................................TTGGTGTTACTTCTTACAGTGT....................................	22	1	117.00	0.00	7.00	110.00	0.00
........................................................................................TTGGTGTTACTTCTTACAGTGG....................................	22	1	82.00	0.00	2.00	2.00	78.00
............................................GCTGTAAATTGTAGCAATCAAAGC..............................................................................	24	1	72.00	0.00	12.00	8.00	52.00
........................................................................................TTGGTGTTACTTCTTACAGT......................................	20	1	71.00	1.00	1.00	66.00	3.00
........................................................................................TTGGTGTTACTTCTTACAGTGAA...................................	23	1	19.00	0.00	1.00	18.00	0.00
........................................................................................CTGGTGTTACTTCTTACAGTGA....................................	22	1	17.00	0.00	0.00	17.00	0.00
........................................................................................TTGGTGTTACTTATTACAGTGA....................................	22	1	16.00	0.00	3.00	13.00	0.00
........................................................................................TTGGTGTTACTTCTTAAAGTGA....................................	22	1	14.00	0.00	1.00	13.00	0.00
........................................................................................TTGGTGTTACTTCTTGCAGTGA....................................	22	1	13.00	0.00	3.00	10.00	0.00
........................................................................................TTGGTGTTAATTCTTACAGTGA....................................	22	1	13.00	0.00	0.00	13.00	0.00
.........................................................................................TTGTGTTACTTCTTACAGTGA....................................	21	1	11.00	0.00	3.00	8.00	0.00
........................................................................................TTGGTGTTACTTCTTACAATGA....................................	22	1	10.00	0.00	0.00	10.00	0.00
........................................................................................TTGGAGTTACTTCTTACAGTGA....................................	22	1	10.00	0.00	1.00	9.00	0.00
........................................................................................TTGGCGTTACTTCTTACAGTGA....................................	22	1	9.00	0.00	0.00	8.00	1.00
........................................................................................TTGGTGTTACTTCTTACAGTTA....................................	22	1	9.00	0.00	0.00	9.00	0.00
........................................................................................TTGGTGTTACCTCTTACAGTGA....................................	22	1	9.00	0.00	1.00	8.00	0.00
........................................................................................TTGGTGTTACTTTTTACAGTGA....................................	22	1	9.00	0.00	0.00	9.00	0.00
.......................................................................................CTTGGTGTTACTTCTTACAGTGA....................................	23	1	9.00	0.00	2.00	7.00	0.00
........................................................................................TTGGTGTTACTTCTTATAGTGA....................................	22	1	8.00	0.00	0.00	8.00	0.00
........................................................................................TTTGTGTTACTTCTTACAGTGA....................................	22	1	8.00	0.00	2.00	6.00	0.00
........................................................................................TTGGTGTCACTTCTTACAGTGA....................................	22	1	7.00	0.00	0.00	6.00	1.00
........................................................................................TTGATGTTACTTCTTACAGTGA....................................	22	1	7.00	0.00	0.00	7.00	0.00
.........................................................................................TGGTGTTACTTCTTACAGTGA....................................	21	1	7.00	0.00	0.00	7.00	0.00
........................................................................................TTGGTATTACTTCTTACAGTGA....................................	22	1	6.00	0.00	1.00	5.00	0.00
........................................................................................TTGGTGTTACTCCTTACAGTGA....................................	22	1	6.00	0.00	2.00	4.00	0.00
........................................................................................TTGGTGTTACTTCTTACAG.......................................	19	1	6.00	0.00	0.00	3.00	3.00
........................................................................................TTGGTGTTACTTCCTACAGTGA....................................	22	1	6.00	0.00	2.00	4.00	0.00
........................................................................................TTGGTTTTACTTCTTACAGTGA....................................	22	1	6.00	0.00	2.00	4.00	0.00
........................................................................................TTGGTGTTACTTCTTACAGCGA....................................	22	1	5.00	0.00	0.00	4.00	1.00
........................................................................................TTGGGGTTACTTCTTACAGTGA....................................	22	1	5.00	0.00	1.00	3.00	1.00
........................................................................................TTGGTGTTGCTTCTTACAGTGA....................................	22	1	5.00	0.00	0.00	5.00	0.00
........................................................................................TTGGTGTTACTTCTTACAGTAA....................................	22	1	5.00	0.00	0.00	5.00	0.00
........................................................................................TTGGTGTTACTTCTTACCGTGA....................................	22	1	5.00	0.00	1.00	4.00	0.00
........................................................................................TTGGTGTTACTTCTTACAGTGC....................................	22	1	5.00	1.00	0.00	4.00	0.00
........................................................................................GTGGTGTTACTTCTTACAGTGA....................................	22	1	5.00	0.00	0.00	5.00	0.00
........................................................................................TTGGTGTTATTTCTTACAGTGA....................................	22	1	4.00	0.00	0.00	4.00	0.00
........................................................................................TTGxxGTTACTTCTTACAGTGA....................................	20	1	4.00	0.00	0.00	4.00	0.00
........................................................................................TTAGTGTTACTTCTTACAGTGA....................................	22	1	4.00	0.00	0.00	4.00	0.00
........................................................................................TTGGTGTTACTTCTTACACTGA....................................	22	1	4.00	0.00	0.00	4.00	0.00
........................................................................................TTGGTGTTACTTCTTACATTGA....................................	22	1	4.00	0.00	0.00	4.00	0.00
........................................................................................TTGGTGTTTCTTCTTACAGTGA....................................	22	1	4.00	0.00	1.00	3.00	0.00
........................................................................................ATGGTGTTACTTCTTACAGTGA....................................	22	1	4.00	0.00	0.00	4.00	0.00
........................................................................................TCGGTGTTACTTCTTACAGTGA....................................	22	1	4.00	0.00	2.00	2.00	0.00
........................................................................................TTGGTGTTACTTCTTACAGTCA....................................	22	1	4.00	0.00	0.00	4.00	0.00
........................................................................................TTGTTGTTACTTCTTACAGTGA....................................	22	1	4.00	0.00	1.00	3.00	0.00
........................................................................................TTCGTGTTACTTCTTACAGTGA....................................	22	1	4.00	0.00	0.00	4.00	0.00
........................................................................................TTGGTGTTACTTCTTACAGTGAT...................................	23	1	4.00	0.00	1.00	3.00	0.00
........................................................................................TTGGTGTTACTTCTCACAGTGA....................................	22	1	3.00	0.00	0.00	3.00	0.00
........................................................................................TTGCTGTTACTTCTTACAGTGA....................................	22	1	3.00	0.00	0.00	3.00	0.00
........................................................................................TGGGTGTTACTTCTTACAGTGA....................................	22	1	3.00	0.00	0.00	3.00	0.00
........................................................................................TTGGTGTTACTACTTACAGTGA....................................	22	1	3.00	0.00	0.00	3.00	0.00
........................................................................................TTGGTGTTACTTCTTAxAGTGA....................................	21	1	3.00	0.00	0.00	3.00	0.00
........................................................................................TTGGTCTTACTTCTTACAGTGA....................................	22	1	3.00	0.00	0.00	3.00	0.00
........................................................................................TAGGTGTTACTTCTTACAGTGA....................................	22	1	3.00	0.00	0.00	3.00	0.00
........................................................................................TTGGTGTTCCTTCTTACAGTGA....................................	22	1	3.00	0.00	0.00	3.00	0.00
........................................................................................CTGGTGTTACTTCTTACAGTG.....................................	21	1	3.00	0.00	0.00	3.00	0.00
........................................................................................TTGGTGCTACTTCTTACAGTG.....................................	21	1	3.00	0.00	0.00	3.00	0.00

droVir3

TGAA--------------------------ATGACGTCACGCCCGCTGTAAAATGTAATCATCAGAGCGTC-CTC--T-C--AACCGCTTGGTGTTACTTCTTACAGTGAGTGCGACGGCCCAAG---GTCCGACCGTA---AA-T	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
........................................................................................TTGGTGTTACTTCTTACAGTGA....................................	22	1	198.00	13.00	44.00	87.00	0.00	54.00
........................................................................................TTGGTGTTACTTCTTACAGTG.....................................	21	1	17.00	6.00	4.00	3.00	1.00	3.00
............................................GCTGTAAAATGTAATCATCAGAGC..............................................................................	24	1	14.00	1.00	6.00	1.00	1.00	5.00
........................................................................................TTGGTGTTACTTCTTACAGTGT....................................	22	1	13.00	7.00	3.00	3.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTACAGTGG....................................	22	1	12.00	0.00	0.00	0.00	0.00	12.00
........................................................................................TTGGTGTTACTTCTTACAGTTA....................................	22	1	8.00	0.00	1.00	7.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTACAGCGA....................................	22	1	3.00	0.00	0.00	2.00	0.00	1.00
........................................................................................TTGGTGTTACTTCTTACATTGA....................................	22	1	3.00	0.00	0.00	3.00	0.00	0.00
............................................GCTGTAAAATGTAATCATCAGA................................................................................	22	1	3.00	0.00	0.00	0.00	0.00	3.00
.......................................................................................CTTGGTGTTACTTCTTACAGTGA....................................	23	1	2.00	0.00	1.00	1.00	0.00	0.00
........................................................................................TGGGTGTTACTTCTTACAGTGAC...................................	23	1	2.00	0.00	2.00	0.00	0.00	0.00
........................................................................................TTGGACTTACTTCTTACAGTGA....................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
........................................................................................TTGGCTTTACTTCTTACAGTGA....................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
........................................................................................TGGGTGTTACTGCTTACAGTGA....................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTACAGT......................................	20	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTGCAGTGA....................................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
............................................GCTGTAAAATGTAATCATCAGACC..............................................................................	24	1	1.00	0.00	1.00	0.00	0.00	0.00
............................................GCTGTAAAATGTAATCATCAGAG...............................................................................	23	1	1.00	0.00	0.00	0.00	0.00	1.00
........................................................................................TTGGTGTTACTTCTTACAGGGG....................................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
.........................................................................................TGGTGTTACTTCTTACAGTGA....................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
............................................GCTGTAGGATGTAATCATCAGAGC..............................................................................	24	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................................TTGGAGTTACTTCTTACAGTGA....................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTACACTGA....................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
TGAA--------------------------ATGACGTCACGCCC......................................................................................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
............................................GCTGTAAGATGTAATCATCAGGG...............................................................................	23	1	1.00	0.00	0.00	0.00	0.00	1.00
........................................................................................TTGGTGTTACTTCTTACAGTGC....................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTACAGTCA....................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
........................................................................................CTGGTGTTACTTCTTACAGTGA....................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
........................................................................................TGGGTGGTACTTCTTACAGTGA....................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................................TTGGTGCTACTTCTTACAGTGA....................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
............................................GCTGTAAAATGTAATCATCATAG...............................................................................	23	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTACAGAGA....................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................................TTGGTGTTAGTTCTTACAGTGA....................................	22	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................................TTGGTGTTTCTTCTTACAGTG.....................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
..........................................CCGCTGTAAAATGTAATCATCAGAGC..............................................................................	26	1	1.00	0.00	0.00	0.00	0.00	1.00
........................................................................................TTGGTGTTACTTCTTACAGTGAT...................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTGCGGTG.....................................	21	1	1.00	0.00	0.00	0.00	0.00	1.00
........................................................................................TTGGTGTTACTTCTTACATTTA....................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTACATTG.....................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
............................................GCTGCAAAATGTAATCATCAGAG...............................................................................	23	1	1.00	0.00	1.00	0.00	0.00	0.00

droMoj3

GAAATG--------------------------AACGTTGCGACCGCTGTAAATTGTAATCATCAAAGCGTC-TGC--T-A--AATCGCTTGGTGTTACTTCTTACAGTGAGCGCGGCGCTCGAAACTACAGTGAAA----------	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
........................................................................................TTGGTGTTACTTCTTACAGTGA....................................	22	1	164.00	14.00	56.00	43.00	51.00
........................................................................................TTGGTGTTACTTCTTACAGTG.....................................	21	1	7.00	0.00	3.00	2.00	2.00
........................................................................................TTGGTGTTACTTCTTACAGTGT....................................	22	1	7.00	0.00	3.00	4.00	0.00
............................................GCTGTAAATTGTAATCATCA..................................................................................	20	1	6.00	0.00	3.00	3.00	0.00
........................................................................................TTGGTGTTACTTCTTACAGTTA....................................	22	1	3.00	0.00	0.00	3.00	0.00
............................................GCTGTAAATTGTAATCATCAAAG...............................................................................	23	1	3.00	0.00	0.00	2.00	1.00
............................................GCTGTAAATTGTAATCATCAAAGC..............................................................................	24	1	3.00	0.00	1.00	1.00	1.00
.......................................................................................CTTGGTGTTACTTCTTACAGTGA....................................	23	1	2.00	1.00	1.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTACAGT......................................	20	1	2.00	0.00	0.00	2.00	0.00
........................................................................................GTGGTGTTACTTCTTACAGTGA....................................	22	1	2.00	0.00	1.00	0.00	1.00
............................................GCTGTAAATTGTAATCATC...................................................................................	19	1	2.00	0.00	0.00	2.00	0.00
........................................................................................TTGGCGTTACTTCTTACAGTGA....................................	22	1	2.00	0.00	2.00	0.00	0.00
.......................................................................................CTTGGTGTTACTTCTTACAGTG.....................................	22	1	2.00	0.00	1.00	0.00	1.00
............................................GCTGTAAATTCTAATCATCAA.................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
........................................................................................TTGGTGTTACTTTTTACAGTGA....................................	22	1	1.00	0.00	0.00	1.00	0.00
........................................................................................TTGGAGCTACTTCTTACAGTG.....................................	21	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTGCAGTGA....................................	22	1	1.00	0.00	1.00	0.00	0.00
...........................................CGCTGTAAATTGTAATCATC...................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TTGGTGTTACTTATTACAGTGT....................................	22	1	1.00	0.00	1.00	0.00	0.00
GAAATG--------------------------AACGTTTCGACC......................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
........................................................................................TTGGAGTTACTTCTTACAGTGA....................................	22	1	1.00	0.00	0.00	0.00	1.00
............................................GCTGTAGATTGTAATCATC...................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTACAGTGC....................................	22	1	1.00	0.00	0.00	1.00	0.00
........................................................................................TTGGTGTTACTTATTACATTGA....................................	22	1	1.00	0.00	1.00	0.00	0.00
............................................GCTGTAAATTGTAATCATCAA.................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
............................................GCTGTAAATTGTAATCCTCACAG...............................................................................	23	1	1.00	0.00	0.00	0.00	1.00
..............................................................................................................GCGCGGCGCTCGAAACTACAG...............	21	1	1.00	1.00	0.00	0.00	0.00
............................................................................................TGTTACTTCTTACAGTGA....................................	18	1	1.00	0.00	0.00	0.00	1.00
........................................................................................TTGGGGTTACTTCTTATAGTG.....................................	21	1	1.00	0.00	1.00	0.00	0.00
.......................................................................................CTTGGTGTTACTTCTTACAGTTA....................................	23	1	1.00	0.00	0.00	1.00	0.00
........................................................................................TGGGTGTTACTTCTTACAGTGA....................................	22	1	1.00	1.00	0.00	0.00	0.00
...........................................CGCTGTAAATTGTAATCATCA..................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
..............................................................................................................GCGCGGCGCTCGCAACTACCG...............	21	1	1.00	0.00	0.00	1.00	0.00
........................................................................................TTGGTGTTACTTCTTACAGTGAT...................................	23	1	1.00	0.00	0.00	0.00	1.00
........................................................................................TTGGTGTTACTTCTTATAGTGG....................................	22	1	1.00	0.00	0.00	1.00	0.00
........................................................................................TTGGGGTTACTTCTTCCAGTGA....................................	22	1	1.00	0.00	1.00	0.00	0.00
........................................................................................TTGGTGTTACTTCTTACCGTGA....................................	22	1	1.00	0.00	0.00	0.00	1.00
........................................................................................TTGGTGTTACTTCTTACAGTGAA...................................	23	1	1.00	1.00	0.00	0.00	0.00

droGri2

T--------------------------TGAATGACGTCACGCCCGCTGTAATATGTAATCATCAAAGCGTG-TATTTT----ACTCGCTTGGTGTTACTTCTTACAGTGAGTGCGACGGCCACACGTCCAGCGGAGGAGAGTGAAT	Size	Hit Count	Total Norm	V109 Male body
........................................................................................TTGGGGTTACTTCTTACAGTG.....................................	21	1	1.00	1.00
........................................................................................TTGGTGTTCCTTCTTACAGTG.....................................	21	1	1.00	1.00
........................................................................................TTGGTGTTACTTCTTACAGTGT....................................	22	1	1.00	1.00

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image		None

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image		None