Possible Orthologs for dme-mir-965

droSim1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	chr2L:248245-248381 -	94.22	TAATTGTACAATCTGGACAATATTGCTCAACATTTTGGGGGGTAAAACTGTACGTTATATGTGCCCTTCTGTGATATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTATTGCAACGAAAAGTGTTTTTC TACTTGTACAATCTGGACAAAATTGCTCAACATTTTGGGGGGTGAAACTGTACGTTATATGTGCCCTTCTGTGAAATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTACTGCAACGAAAAGTGGTTTTC Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo ......................................GGGGTGAAACTGTACGTTATATG............................................................................ 23 1 929.00 364.00 253.00 46.00 266.00 ................................................................................TAAGCGTATAGCTTTTCCCCTT................................... 22 1 355.00 263.00 11.00 74.00 7.00 ................................................................................TAAGCGTATAGCTTTTCCCCT.................................... 21 1 262.00 25.00 181.00 32.00 24.00 ......................................GGGGTGAAACTGTACGTTATA.............................................................................. 21 1 38.00 15.00 10.00 2.00 11.00 ......................................GGGGTGAAACTGTACGTTATAT............................................................................. 22 1 34.00 18.00 6.00 3.00 7.00 ................................................................................TAATCGTATAGCTTTTCCCCT.................................... 21 1 25.00 0.00 19.00 1.00 5.00 ................................................................................TAAGCGTATAGCTTTTCCCCC.................................... 21 1 24.00 0.00 22.00 2.00 0.00 ................................................................................TAACCGTATAGCTTTTCCCCT.................................... 21 1 21.00 0.00 19.00 0.00 2.00 ...........................................GAAACTGTACGTTATATG............................................................................ 18 1 16.00 0.00 4.00 2.00 10.00 .............................................................TGCCCTTCTGTGAAATTC.......................................................... 18 1 14.00 0.00 9.00 0.00 5.00 .............................................................TGCCCTTCTGTGAAATTCA......................................................... 19 1 12.00 2.00 4.00 0.00 6.00 ................................................................................TAAGCGTATAGCTTTTCCCC..................................... 20 1 11.00 0.00 6.00 5.00 0.00 ......................................GGGGTGAAACTGTACGTTATATT............................................................................ 23 1 9.00 8.00 0.00 0.00 1.00 ................................................................................TAATCGTATAGCTTTTCCCCTT................................... 22 1 9.00 0.00 6.00 0.00 3.00 .....................................GGGGGTGAAACTGTACGTTATATG............................................................................ 24 1 7.00 2.00 1.00 0.00 4.00 ......................................GGGGAGAAACTGTACGTTATATG............................................................................ 23 1 7.00 6.00 0.00 0.00 1.00 ................................................................................TAAGCGTATAGCTTTTCCCCTTA.................................. 23 1 6.00 6.00 0.00 0.00 0.00 ..........................................TGAAACTGTACGTTATATG............................................................................ 19 1 6.00 0.00 2.00 1.00 3.00 .......................................GGGTGAAACTGTACGTTATATG............................................................................ 22 1 6.00 0.00 0.00 0.00 6.00 ......................................GGGGGGAAACTGTACGTTATATG............................................................................ 23 1 5.00 3.00 0.00 0.00 2.00 ................................................................................TAAGCGTATAGCTTTTCCCCG.................................... 21 1 5.00 0.00 4.00 1.00 0.00 ......................................GGGGTGAAACTGTACGTTATATGA........................................................................... 24 1 5.00 3.00 1.00 0.00 1.00 ......................................GGGGTGAAACTGTACGCTATATG............................................................................ 23 1 4.00 4.00 0.00 0.00 0.00 ......................................GGGGTGAAACTGTACGTTCTATG............................................................................ 23 1 4.00 4.00 0.00 0.00 0.00 ......................................GGGGTGAAACTGTACGTTATCTG............................................................................ 23 1 4.00 4.00 0.00 0.00 0.00 ................................................................................TAAGCGGATAGCTTTTCCCCTT................................... 22 1 4.00 3.00 0.00 1.00 0.00 ................................................................................TAATCGTATAGCTTTTCCCCC.................................... 21 1 3.00 0.00 3.00 0.00 0.00 ......................................GGGGTGAAACTGTACGTTTTATG............................................................................ 23 1 3.00 3.00 0.00 0.00 0.00 ................................................................................................TCCCTTAAAAGTTGGAGC....................... 18 1 3.00 0.00 0.00 3.00 0.00 ......................................GGTGTGAAACTGTACGTTATATG............................................................................ 23 1 3.00 0.00 2.00 0.00 1.00 ......................................GGGGTGAAACTGTACGTTA................................................................................ 19 1 3.00 2.00 0.00 0.00 1.00 ................................................................................TAAGTGTATAGCTTTTCCCCT.................................... 21 1 3.00 0.00 3.00 0.00 0.00 ................................................................................TAAGAGTATAGCTTTTCCCCTT................................... 22 1 3.00 3.00 0.00 0.00 0.00

droSec1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	super_14:240987-241123 -	94.22	TAATTGTACAATCTGGACAATATTGCTCAACATTTTGGGGGGTAAAACTGTACGTTATATGTGCCCTTCTGTGATATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTATTGCAACGAAAAGTGTTTTTC TACTTGTACAATCTGGACAAAATTGCTCAACATTTTGGGGGGTGAAACTGTACGTTATATGTGCCCTTCTGTGAAATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTACTGCAACGAAAAGTGGTTTTC Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head ......................................GGGGTGAAACTGTACGTTATATG............................................................................ 23 1 892.00 99.00 485.00 308.00 ................................................................................TAAGCGTATAGCTTTTCCCCTT................................... 22 1 855.00 138.00 385.00 332.00 ................................................................................TAAGCGTATAGCTTTTCCCCT.................................... 21 1 213.00 25.00 49.00 139.00 ................................................................................TAAGCGTATAGCTTTTCCCCTTT.................................. 23 1 47.00 7.00 16.00 24.00 ................................................................................TAAGCGTATAGCTTTTCCCTTT................................... 22 1 28.00 0.00 27.00 1.00 ................................................................................TAAGCGTATAGCTTTTCCCC..................................... 20 1 21.00 0.00 7.00 14.00 ......................................GGGGTGAAACTGTACGTTATAT............................................................................. 22 1 18.00 2.00 11.00 5.00 .................................................................................AAGCGTATAGCTTTTCCCCTT................................... 21 1 9.00 0.00 2.00 7.00 ................................................................................TAAGCGTATAGTTTTTCCCCTT................................... 22 1 6.00 0.00 6.00 0.00 .....................................GGGGGTGAAACTGTACGTTATATG............................................................................ 24 1 5.00 0.00 3.00 2.00 ................................................................................TAAGCGTATAGCTTTTCCCCTTA.................................. 23 1 5.00 1.00 3.00 1.00 ......................................GGGGTGAAGCTGTACGTTATATG............................................................................ 23 1 4.00 0.00 3.00 1.00 ......................................GGGGTTAAACTGTACGTTGTATG............................................................................ 23 1 4.00 0.00 0.00 4.00 ..................................................................................AGCGTATAGCTTTTCCCCTT................................... 20 1 4.00 0.00 3.00 1.00 ......................................GGGGTGAAACTxTACGTTATATG............................................................................ 22 1 4.00 0.00 3.00 1.00 ......................................GGGGTGAAATTGTACGTTATATG............................................................................ 23 1 4.00 0.00 4.00 0.00 ................................................................................TAAGCCTATAGCTTTTCCCCTT................................... 22 1 4.00 0.00 2.00 2.00 ......................................GGGGTGAAACTGTACGTTATA.............................................................................. 21 1 4.00 1.00 3.00 0.00 ................................................................................TAAGCGTATAGCTTTTCCCCTC................................... 22 1 4.00 0.00 4.00 0.00 ......................................GGGGCGAAACTGTACGTTATATG............................................................................ 23 1 3.00 0.00 2.00 1.00 ......................................GGGGTAAAACTGTACGTTATATG............................................................................ 23 1 3.00 1.00 1.00 1.00 ................................................................................TAAGCGTATAGCTCTTCCCCTT................................... 22 1 3.00 0.00 3.00 0.00 ......................................GGGGTGAAACTGTACGTTATATGA........................................................................... 24 1 3.00 1.00 2.00 0.00 .......................................GGGTGAAACTGTACGTTATATG............................................................................ 22 1 3.00 0.00 2.00 1.00 ................................................................................TAAGTGTATAGCTTTTCCCCTT................................... 22 1 3.00 0.00 3.00 0.00

droYak2 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	chr2L:236040-236180 -	81.59	TAATTGTACAATCT-----GGACAATATTGCTCAACATTTTGGGGGGTAAAACTGTACGTTATATGTGCCCTTCTGTGATATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTATTGCAACGAAAAGTGTTTTTC TAATTGTACAATCACCATCTGACAAAATTGCTCAACATTTTAGGGGGTTAAACTGTACGTTATATGTGCCCTTTTGTAA-ATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTGAAGCAACAGCAACAAATAGTGTATTTC Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head .....................................................................................TAAGCGTATAGCTTTTCCCCTT................................... 22 1 1047.00 211.00 262.00 45.00 525.00 4.00 ...........................................GGGGTTAAACTGTACGTTATATG............................................................................ 23 1 174.00 100.00 5.00 12.00 14.00 43.00 .....................................................................................TAAGCGTATAGCTTTTCCCCT.................................... 21 1 169.00 16.00 42.00 13.00 84.00 14.00 .....................................................................................TAAGCGTATAGCTTTTCCCCTTT.................................. 23 1 32.00 8.00 7.00 2.00 15.00 0.00 ...........................................GGGGTTAAACTGTACGTTATA.............................................................................. 21 1 20.00 11.00 0.00 0.00 0.00 9.00 .....................................................................................TAAGCGTATAGCTTTTCCCC..................................... 20 1 18.00 1.00 4.00 0.00 12.00 1.00 .....................................................................................TAAGCGTATAGCTTTTCCCCTTA.................................. 23 1 12.00 5.00 3.00 0.00 4.00 0.00 .....................................................................................TAAGCGTATAACTTTTCCCCTT................................... 22 1 6.00 1.00 2.00 0.00 3.00 0.00 .....................................................................................TAAGAGTATAGCTTTTCCCCTT................................... 22 1 6.00 2.00 0.00 0.00 4.00 0.00 ...........................................GGGGTTAAACTGTACGTTATATT............................................................................ 23 1 5.00 4.00 1.00 0.00 0.00 0.00 .....................................................................................TAAGCGTGTAGCTTTTCCCCTT................................... 22 1 4.00 1.00 1.00 0.00 2.00 0.00 .....................................................................................TAAGCGTATACCTTTTCCCCTT................................... 22 1 4.00 0.00 0.00 0.00 4.00 0.00 .....................................................................................TAAGCGTATAGCTTTTCCCCCT................................... 22 1 4.00 1.00 0.00 0.00 3.00 0.00 .....................................................................................TAGGCGTATAGCTTTTCCCCTT................................... 22 1 4.00 1.00 2.00 0.00 1.00 0.00 .....................................................................................TAAGCGTATCGCTTTTCCCCTT................................... 22 1 4.00 1.00 1.00 0.00 2.00 0.00 .....................................................................................TAAGCGTATAGCTTTTCCCCTTAA................................. 24 1 4.00 3.00 0.00 0.00 1.00 0.00 .....................................................................................TAATCGTATAGCTTTTCCCCT.................................... 21 1 3.00 0.00 0.00 0.00 0.00 3.00 .....................................................................................TCAGCGTATAGCTTTTCCCCTT................................... 22 1 3.00 0.00 0.00 0.00 3.00 0.00 .....................................................................................TAAGCGTGTAGCTTTTCCCCT.................................... 21 1 3.00 0.00 0.00 0.00 3.00 0.00 ...........................................GGGGTTAAACTGTACGTTATATGTGCC........................................................................ 27 1 3.00 0.00 0.00 0.00 0.00 3.00 .....................................................................................TAAGCGGATAGCTTTTCCCCTT................................... 22 1 3.00 0.00 0.00 0.00 3.00 0.00 ...........................................GGGGTTAAACTGTACGTTATATGT........................................................................... 24 1 3.00 1.00 0.00 1.00 0.00 1.00 .....................................................................................TAAGCGTATAGCTTTTACCCTT................................... 22 1 3.00 0.00 0.00 0.00 3.00 0.00 .....................................................................................TAACAGTATAGCTTTTCCCCTT................................... 22 1 3.00 1.00 0.00 0.00 2.00 0.00 ..........................................GGGGGTTAAACTGTACGTTATATG............................................................................ 24 1 3.00 2.00 0.00 0.00 0.00 1.00 .....................................................................................TAAGCGTATTGCTTTTCCCCTT................................... 22 1 3.00 0.00 1.00 0.00 2.00 0.00 .....................................................................................TAAGCGTATAGCTTTTCCCCTTTT................................. 24 1 3.00 1.00 0.00 0.00 2.00 0.00

droEre2 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scaffold_4929:289337-289472 -	85.5	TAATTGTACAATCTGGACAATATTGCTCAACATTTTGGGGGGTAAAACTGTACGTTATATGTGCCCTTCTGTGATATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTATTGCAACGAAAAGTGTTTTTC TACTTGTAGAACCTG-ACAAAATTGCTCAACATTTTAGGGGGTGAAACTGTACGTTATATGTGTCCTTCTGTAAAATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTACAGCAACAGCAACAAAAAGTGAATCTT Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head ......................................GGGGTGAAACTGTACGTTATATG............................................................................ 23 1 1327.00 172.00 20.00 0.00 1135.00 ................................................................................TAAGCGTATAGCTTTTCCCCTT................................... 22 1 702.00 213.00 139.00 0.00 350.00 ................................................................................TAAGCGTATAGCTTTTCCCCT.................................... 21 1 169.00 19.00 13.00 0.00 137.00 ......................................GGGGTGAAACTGTACGTTATATT............................................................................ 23 1 43.00 28.00 0.00 0.00 15.00 ................................................................................TAAGCGTATAGCTTTTCCCCTTT.................................. 23 1 34.00 5.00 14.00 0.00 15.00 ......................................GGGGTGAAACTGTACGTTATAT............................................................................. 22 1 28.00 12.00 0.00 0.00 16.00 ......................................TGGGTGAAACTGTACGTTATATG............................................................................ 23 1 25.00 1.00 0.00 0.00 24.00 ......................................GTGGTGAAACTGTACGTTATATG............................................................................ 23 1 21.00 0.00 0.00 0.00 21.00 ......................................GGGGTGAAACTGTACGTTATATA............................................................................ 23 1 16.00 1.00 0.00 0.00 15.00 ......................................GGTGTGAAACTGTACGTTATATG............................................................................ 23 1 15.00 0.00 0.00 0.00 15.00 ................................................................................TAAGCGTATAGCTTTTCCCC..................................... 20 1 12.00 0.00 1.00 0.00 11.00 ......................................GGGGTGAAACTGTACGTTATA.............................................................................. 21 1 11.00 5.00 0.00 0.00 6.00 ................................................................................TAAGCGTATAGCTTTTCCCATT................................... 22 1 11.00 0.00 0.00 0.00 11.00 ......................................GGGGTTAAACTGTACGTTATATG............................................................................ 23 1 10.00 1.00 0.00 0.00 9.00 ......................................GGGGTGAAACTGTACGTTATATC............................................................................ 23 1 10.00 0.00 0.00 0.00 10.00 ......................................GGGGTGAAACTTTACGTTATATG............................................................................ 23 1 9.00 0.00 0.00 0.00 9.00 ................................................................................TAAGCGTATAGCTTTTCCCCTTG.................................. 23 1 7.00 0.00 1.00 0.00 6.00 ......................................GGGGCGAAACTGTACGTTATATG............................................................................ 23 1 7.00 2.00 0.00 0.00 5.00 ......................................GGGGTGAAAATGTACGTTATATG............................................................................ 23 1 7.00 0.00 0.00 0.00 7.00 ................................................................................TAAGCGTATAGCTTTTCCCCTTA.................................. 23 1 6.00 1.00 1.00 0.00 4.00 ......................................GGGTTGAAACTGTACGTTATATG............................................................................ 23 1 6.00 0.00 0.00 0.00 6.00 ......................................GGGGTGAAACTGTACTTTATATG............................................................................ 23 1 6.00 0.00 0.00 0.00 6.00 ......................................GGGGTGAAACTGTACGTTATCTG............................................................................ 23 1 5.00 0.00 0.00 0.00 5.00 ................................................................................TAAGCGTATAGCTTTTCCC...................................... 19 1 5.00 0.00 1.00 0.00 4.00 ................................................................................TAAGCGTATAGATTTTCCCCTT................................... 22 1 4.00 0.00 0.00 0.00 4.00 ................................................................................TAAGCGTATAGCTTTTCCACT.................................... 21 1 4.00 0.00 0.00 0.00 4.00 ......................................GGGGTGAAACTGTATGTTATATG............................................................................ 23 1 4.00 0.00 0.00 0.00 4.00 ......................................GGGGAGAAACTGTACGTTATATG............................................................................ 23 1 4.00 1.00 0.00 0.00 3.00 ................................................................................TAAGCGTATAGCTTTTCCCCTTAA................................. 24 1 4.00 4.00 0.00 0.00 0.00 .................................................................................AAGCGTATAGCTTTTCCCCTT................................... 21 1 3.00 1.00 1.00 0.00 1.00 ......................................GGGGTGAGACTGTACGTTATATG............................................................................ 23 1 3.00 0.00 0.00 0.00 3.00 ......................................GGGGTGAAACTGTACGCTATATG............................................................................ 23 1 3.00 0.00 0.00 0.00 3.00 .....................................GGGGGTGAAACTGTACGTTATATG............................................................................ 24 1 3.00 0.00 0.00 0.00 3.00 ................................................................................TAAGCGGATAGCTTTTCCCCTT................................... 22 1 3.00 3.00 0.00 0.00 0.00 ................................................................................TAAGCGTATAGCTTTTACCCTT................................... 22 1 3.00 0.00 0.00 0.00 3.00 ......................................GGGGTGAAACTGTAAGTTATATG............................................................................ 23 1 3.00 0.00 0.00 0.00 3.00 ................................................................................TAAGCGTATAGCTTTTCCCAT.................................... 21 1 3.00 0.00 0.00 0.00 3.00 ................................................................................TAAGCGTATAGCTTTTCCACTT................................... 22 1 3.00 0.00 0.00 0.00 3.00 .......................................GGGTGAAACTGTACGTTATATG............................................................................ 22 1 3.00 0.00 0.00 0.00 3.00 ......................................AGGGTGAAACTGTACGTTATATG............................................................................ 23 1 3.00 0.00 0.00 0.00 3.00 .............................................................TGTCCTTCTGTAAAATTCA......................................................... 19 1 3.00 0.00 1.00 0.00 2.00 .....................................CGGGGTGAAACTGTACGTTATATG............................................................................ 24 1 3.00 0.00 0.00 0.00 3.00 ................................................................................TAAGAGTATAGCTTTTCCCCTT................................... 22 1 3.00 1.00 0.00 0.00 2.00 ......................................GGGGTGAAACTGTACGTTA................................................................................ 19 1 3.00 2.00 0.00 0.00 1.00

droFic1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
2	scf7180000453904:509771-509921 -	62.17	TAATTGTACAATCTG--GACAATATTGCTCAACATTTTGGGGGGTAAAACTGTACGTTATATGTGCCCTTCTGTGATATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTATTGCAACGAAAAGTG------------TTTTTC ACGGTGTAAAAGCCAAAGATTTTATTGCTCAACATTTTGAGGGGTGAAACTGTACGTTGTATGTGCCCTATTATAAAAACCATAAGCGTATAGCTTTTCCCCTTAAAAGTTGATGCAACACCAACAAAAAGTGACCGATAAATAATCTCTA Size Hit Count Total Norm

droEug1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
2	scf7180000409461:574432-574571 +	82.07	TAATT---GTACAATCTGGACAATATTGCTCAACATTTTGGGGGGTAAAACTGTACGTTATATGTGCCCTTCTGTGATATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTATTGCAACGAAAAGTGTTTTTC TAATTTTTTTGAGAACCTGACAATATTGCTCAACATTTTAGGGGGTTAAACTGTACGTTATATGTGCTATTCTATGAAATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAAAGCAACAGCAGCAAAAAGTGTTTTTA Size Hit Count Total Norm

droBia1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000301547:14040-14201 +	57.58	TAATTGTACAATCTGGACAATATTGCTCAACATTTTGGGGGGTAAAACTGTACGTTATATGTGCCCTTCTGTGATATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTATTGCAACGAAAAGTG----------------------TTTT-------TC CACTTGTGCCATC---ACGATATTGCCCGACATTTTGGGGGGTGAAACTGTACGTTATATGTGCCATTCTATGAAATTCATAAGCGTATAGCTTTTCCCCTTAGAAGTTGGTGCAACAGCAACGACC-GTGTGATAAATTGTAGGAGTATATGTTCTTTTATGATC Size Hit Count Total Norm

droTak1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000413017:293129-293264 +	85.5	TAATTGTACAATCTGGACAATATTGCTCAACATTTTGGGGGGTAAAACTGTACGTTATATGTGCCCTTCTGTGATATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTATTGCAACGAAAAGTGTTTTTC TACTTTTACAATCTG-ACAATATTGCTTAACATTTTGGGGGGTGAAACTGTACGTTATATGTGCCATTCTATGAAATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAATGCAAAAGCAACAGAAAGTATGATTA Size Hit Count Total Norm

droEle1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
2	scf7180000490454:128315-128470 +	63.94	TAATTGTACAATCTGGACAATATTGCTCAACATTTTGGGGGGTAAAACTGTACGTTATATGTGCCCTTCTGTGATATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTATTGCAACGAAAA----------------------GTGTTTTTC TAGTTTTACAACCTG-ACAATATTGCTCAACATTTTGGGGGGTGAAACTGTACGTTATATGTGCCATTCTATAAAATCCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAATGCAACAGCAACAAAAATAAATTGTAAGAGTAAAACAATGCGTTCT-- Size Hit Count Total Norm

droRho1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
3	scf7180000779252:273002-273136 -	81.75	TAATTGTACAATCTGGACAATATTGCTCAACATTTTGGGGGGTAAAACTGTACGTTATATGTGCCCTTCTGTGATATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTATTGCAACGAAAAGTGTTTTTC TCCTTTTACAACCTG-AGAATATTGCTCAACATTTTGGGGGGTGAAACTGTACGTTGTATGTGTCATTCTTTAAAATCCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAATGCAACAGCAACAAAAAG-GATGATA Size Hit Count Total Norm

droKik1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000302401:552944-553112 -	51.05	TAATTGTACAATCTG-----------------------------------GACAATATTGCTCAACATTTTGGGGGGTAAAACTGTACGTTATATGTGCCCTTCTGTGATATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTATTGCAACGAA-AAGTGTTTTTC TA---GTCCAAATTGCAGCTAATGTGTTATGATATATAAATAGAATGAATAATATTATTGCTCATCATTTTGGGGGGTCAAACTGTACGTTATATGTGCCAATCTATGAAATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTGATGCAACAACAACGAAAAAGTGTAATA- Size Hit Count Total Norm

droAna3 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scaffold_12943:4147952-4148086 +	70.75	TAATTGTACAATCTGGACAATATTGCTCAAC-ATTTTGGGGGGTAAAACTGTACGTTATATGTGCCCTTCTGTGATATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTATTGCAACGA---------AAAGTGTTTTTC TGGGTTT----TCTGGA------AGCTCAACCCTTTTGGGGGGTCAAACTGTACGTTCTATGTGGCAATCTTAGAAATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTGAAGCAAAGTCAACAAATCTCAACTAAAGTGTTTT-- Size Hit Count Total Norm V105 Male body V106 Head V055 Unknown V039 Embryo .................................................................................TAAGCGTATAGCTTTTCCCCTT............................................ 22 1 785.00 76.00 161.00 351.00 197.00 .......................................GGGGTCAAACTGTACGTTCTATG..................................................................................... 23 1 662.00 3.00 632.00 11.00 16.00 .................................................................................TAAGCGTATAGCTTTTCCCCT............................................. 21 1 296.00 30.00 122.00 81.00 63.00 .................................................................................TAAGCGTATAGCTTTTCCCCTTT........................................... 23 1 81.00 15.00 16.00 39.00 11.00 .................................................................................TAAGCGTATAGCTTTTCCCC.............................................. 20 1 35.00 0.00 17.00 13.00 5.00 .................................................................................TAAGCGTATAGCTTTTCCCCTTA........................................... 23 1 18.00 0.00 2.00 6.00 10.00 .......................................GGTGTCAAACTGTACGTTCTATG..................................................................................... 23 1 15.00 0.00 15.00 0.00 0.00 .................................................................................TAAGCGTATAGCTTTTCCCCTTG........................................... 23 1 12.00 1.00 6.00 4.00 1.00 .................................................................................TAAGCGTATAGCTTTTCCCCTTTT.......................................... 24 1 11.00 2.00 1.00 8.00 0.00 .......................................GGGGTCAAACTGTACGTTCTATT..................................................................................... 23 1 9.00 0.00 6.00 0.00 3.00 .......................................GGGGTCAAACTGTACGTTCTATGT.................................................................................... 24 1 8.00 0.00 7.00 0.00 1.00 ..............................................................TGGCAATCTTAGAAATTCA.................................................................. 19 1 6.00 0.00 3.00 0.00 3.00 .................................................................................TAATCGTATAGCTTTTCCCCTT............................................ 22 1 6.00 1.00 3.00 0.00 2.00 .................................................................................TAAGCGTATAGCTTTTCCCCTTAA.......................................... 24 1 6.00 0.00 0.00 0.00 6.00 .................................................................................TAAGCGGATAGCTTTTCCCCTT............................................ 22 1 6.00 0.00 0.00 2.00 4.00 .................................................................................TAAGAGTATAGCTTTTCCCCTT............................................ 22 1 6.00 0.00 0.00 5.00 1.00 .......................................GGGGTCAAACTGTACGTTCTAT...................................................................................... 22 1 5.00 0.00 5.00 0.00 0.00 .................................................................................TAAGCGTATAGCTTTTCCCCTA............................................ 22 1 5.00 0.00 0.00 0.00 5.00 .................................................................................TAAGCGTATAGCTTTTCCCCAT............................................ 22 1 4.00 2.00 2.00 0.00 0.00 .......................................GGGGTCAAACTGTACGTTATATG..................................................................................... 23 1 4.00 0.00 4.00 0.00 0.00 .................................................................................TAAGCGTATAGCTTTTCCCCA............................................. 21 1 4.00 0.00 4.00 0.00 0.00 .......................................GGGGTCAAACTGCACGTTCTATG..................................................................................... 23 1 4.00 0.00 3.00 1.00 0.00 .......................................GGGGTCAAGCTGTACGTTCTATG..................................................................................... 23 1 4.00 0.00 3.00 1.00 0.00 ..................................................................................AAGCGTATAGCTTTTCCCCTT............................................ 21 1 4.00 2.00 1.00 1.00 0.00 .................................................................................TAAGCGTATAGCTTTTCCC............................................... 19 1 3.00 2.00 0.00 1.00 0.00 .................................................................................TAAGCGTATAGCTTTTCCCCTG............................................ 22 1 3.00 0.00 0.00 2.00 1.00 .................................................................................TAAGCGTATAGCTTTTCCCTTT............................................ 22 1 3.00 1.00 0.00 1.00 1.00 .......................................GGGGTGAAACTGTACGTTATATG..................................................................................... 23 1 3.00 0.00 1.00 0.00 2.00 .......................................GGGGTCAAACTGTACGTTCTATGTG................................................................................... 25 1 3.00 0.00 2.00 0.00 1.00 .................................................................................TAAGCGTATAGCTTTTCCCCTTAAA......................................... 25 1 3.00 1.00 0.00 0.00 2.00 .......................................GGGGTCAAACTGTACGTTCTGTG..................................................................................... 23 1 3.00 0.00 3.00 0.00 0.00 .......................................GTGGTCAAACTGTACGTTCTATG..................................................................................... 23 1 3.00 0.00 3.00 0.00 0.00 .................................................................................TAAGCGTATAGCTTTTTCCCTT............................................ 22 1 3.00 0.00 0.00 1.00 2.00 .................................................................................TAAGCGTAGAGCTTTTCCCCTT............................................ 22 1 3.00 1.00 0.00 2.00 0.00 .................................................................................TAAGCGTATATCTTTTCCCCTT............................................ 22 1 3.00 0.00 1.00 1.00 1.00 .................................................................................TAAGCGTATAGCTTTTCCACT............................................. 21 1 3.00 0.00 3.00 0.00 0.00 .................................................................................TAAGCGTATACCTTTTCCCCTT............................................ 22 1 3.00 0.00 0.00 2.00 1.00 .................................................................................GAAGCGTATAGCTTTTCCCCTT............................................ 22 1 3.00 0.00 0.00 2.00 1.00 .................................................................................TAAGCGGATAGCTTTTCCCCT............................................. 21 1 3.00 0.00 0.00 3.00 0.00 .................................................................................TAAGCGTATAGATTTTCCCCT............................................. 21 1 3.00 1.00 2.00 0.00 0.00 .................................................................................TAAGCGTACAGCTTTTCCCCTT............................................ 22 1 3.00 1.00 1.00 0.00 1.00 ..................................................................................AAGCGTATAGCTTTTCCCCTTT........................................... 22 1 3.00 0.00 1.00 2.00 0.00

droBip1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000395973:371238-371378 +	67.93	TAATTGTACAATCTG-----------GACAATATTGCTCAACATTTTGGGGGGTAAAACTGTACGTTATATGTGCCCTTCTGTGATATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTATTGCAACGAAAAGTGTTTTTC ATACTATATAGTCTAGTAGTATTAATGACAATATTGCTCAACCATTTGGGGGGTCAAACTGTACGTTGTATGTGCCAAACTATGAAATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTGAAGCAAAGCCAGCAA-------TTGTC Size Hit Count Total Norm

dp4 - 3 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
3	chr4_group1:4362148-4362281 +	65.48	TAATTGTACAATCTGGACAATATTGCTCAACATTTTGGGGGGTAAAACTGTACGTTATATGTGCCCTTCTGTGATATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCT---------ATTGCAACGAAAAGTGTTTTTC TCATTTCCCCATCT----------GCTCAAAAATTTGAGGGGTCAAACTGTACGTTCTATGTGACAATATTCGAAATTCATAAGCGTATAGCTTTTCCCCTTAAAACTTGATGCAACAGCAACAATCGCAACAACAAT--TCTAGC Size Hit Count Total Norm V112 Male body V043 Embryo V051 Head M022 Male body ................................................................................TAAGCGTATAGCTTTTCCCCTT............................................ 22 1 642.00 62.00 379.00 201.00 0.00 ......................................GGGGTCAAACTGTACGTTCTATG..................................................................................... 23 1 104.00 13.00 87.00 4.00 0.00 ................................................................................TAAGCGTATAGCTTTTCCCCT............................................. 21 1 103.00 20.00 61.00 22.00 0.00 ................................................................................TAAGCGTATAGCTTTTCCCCTTT........................................... 23 1 42.00 7.00 27.00 8.00 0.00 ................................................................................TAAGCGTATAGCTTTTCCCCTTA........................................... 23 1 16.00 0.00 15.00 1.00 0.00 ......................................GGGGTCAAACTGTACGTTGTATG..................................................................................... 23 1 8.00 0.00 8.00 0.00 0.00 ................................................................................TAAGCGGATAGCTTTTCCCCTT............................................ 22 1 7.00 0.00 6.00 1.00 0.00 ................................................................................TAAGCGTATAGCTTTTCCCC.............................................. 20 1 6.00 0.00 2.00 4.00 0.00 .............................................................TGACAATATTCGAAATTCA.................................................................. 19 1 6.00 0.00 5.00 1.00 0.00 ................................................................................TAAGCGTATAGCTTTTCCCCTTAA.......................................... 24 1 5.00 0.00 5.00 0.00 0.00 .................................................................................AAGCGTATAGCTTTTCCCCTT............................................ 21 1 5.00 1.00 1.00 3.00 0.00 ......................................GGGGTGAAACTGTACGTTATATG..................................................................................... 23 1 4.00 0.00 4.00 0.00 0.00 ................................................................................TAAGCGTATAGCTTTTCCCCCT............................................ 22 1 4.00 0.00 3.00 1.00 0.00 ................................................................................TAAGAGTATAGCTTTTCCCCTT............................................ 22 1 4.00 0.00 4.00 0.00 0.00 ................................................................................TAAGCGTGTAGCTTTTCCCCTT............................................ 22 1 3.00 0.00 1.00 2.00 0.00 ................................................................................TAAGCGTATAGCTTTTCCCCTTTT.......................................... 24 1 3.00 0.00 2.00 1.00 0.00 ......................................GGGGTCAAACTGTACGTTCTAT...................................................................................... 22 1 3.00 1.00 2.00 0.00 0.00 ................................................................................TAAGCGTATAGCTTTTCCCTTT............................................ 22 1 3.00 0.00 1.00 2.00 0.00
2	chr4_group1:4361709-4361867 +	39.8	TAATTGTACAAT------CTGGACAATATTGCTCAACATTTTGGGGGGT-----AAAACTGTACG-----------------------------------------TTATATGTGCCCTTCTGTGATATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTATTGCAACGAAAAGTGTTTTTC TTATTTTACACTTGATCTTTGTTTTATTTTTTGAAACATTTTGGGTGGGTGGTTCATACTTCCCTCATGCGAGTATAAAGTATGAACTAGTTCTAGTTCGTCATTATTTTATTTGCCTTCC------------TAGCAAATATTTGCTCCCCC------------------CCACGAACAAATTTTCAT Size Hit Count Total Norm V112 Male body V043 Embryo V051 Head M022 Male body ......................................TTGTGGGTxGGTGGTTCAT.................................................................................................................................... 18 1 34.00 33.00 0.00 1.00 0.00 ......................................TTTTGGGTxGGTGGTGCAT.................................................................................................................................... 18 1 23.00 23.00 0.00 0.00 0.00 .....................................ATTTTGGGTxGGTGGTGCAT.................................................................................................................................... 19 1 2.00 2.00 0.00 0.00 0.00 .....................................ATTTTxxGTGGGTGGTTCAT.................................................................................................................................... 18 1 1.00 1.00 0.00 0.00 0.00 ......................................TTATGGGTxGGTGGTTCAT.................................................................................................................................... 18 1 1.00 1.00 0.00 0.00 0.00
4	chr4_group1:4362505-4362523 +	8.15	TAATTGTACAATCTGGACAATATTGCTCAACATTTTGGGGGGTAAAACTGTACGTTATATGTGCCCTTCTGTGATATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTATTGCAACGAAAAGTGTTTTTC ----------------------------------------------------------------------------------------------------------------------GCAGTCACAAGAGCTTAAC Size Hit Count Total Norm V112 Male body V043 Embryo V051 Head M022 Male body		None

droPer1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
3	super_5:848159-848292 -	65.48	TAATTGTACAATCTGGACAATATTGCTCAACATTTTGGGGGGTAAAACTGTACGTTATATGTGCCCTTCTGTGATATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCT---------ATTGCAACGAAAAGTGTTTTTC TCATTTCCCCATCT----------GCTCAAAAATTTGAGGGGTCAAACTGTACGTTCTATGTGACAATATTCGAAATTCATAAGCGTATAGCTTTTCCCCTTAAAACTTGATGCAACAGCAACAATCGCAACAACAAT--TCTAGC Size Hit Count Total Norm V111 Male body V042 Embryo V050 Head V057 Head M021 Embryo ................................................................................TAAGCGTATAGCTTTTCCCCTT............................................ 22 1 740.00 28.00 192.00 123.00 397.00 0.00 ................................................................................TAAGCGTATAGCTTTTCCCCT............................................. 21 1 114.00 10.00 31.00 8.00 60.00 5.00 ......................................GGGGTCAAACTGTACGTTCTATG..................................................................................... 23 1 105.00 8.00 34.00 6.00 6.00 51.00 ................................................................................TAAGCGTATAGCTTTTCCCCTTT........................................... 23 1 52.00 2.00 9.00 15.00 26.00 0.00 ................................................................................TAAGCGGATAGCTTTTCCCCTT............................................ 22 1 16.00 0.00 1.00 0.00 15.00 0.00 ......................................GGGGTCAAACTGTACGTTCTA....................................................................................... 21 1 12.00 0.00 0.00 0.00 0.00 12.00 ................................................................................TAAGCGTATAGCTTTTCCCCTTA........................................... 23 1 6.00 0.00 4.00 0.00 2.00 0.00 ................................................................................TAAACGTATAGCTTTTCCCCTT............................................ 22 1 5.00 0.00 3.00 1.00 1.00 0.00 ................................................................................TAAGCGTGTAGCTTTTCCCCTT............................................ 22 1 5.00 0.00 1.00 1.00 3.00 0.00 ................................................................................TAAGCGTATAGCTTTTCCCC.............................................. 20 1 5.00 0.00 0.00 2.00 3.00 0.00 ................................................................................TAAGCGTATAGCCTTTCCCCTT............................................ 22 1 5.00 0.00 0.00 0.00 5.00 0.00 ......................................GGGGTCAAACTGTACGTTCT........................................................................................ 20 1 4.00 0.00 0.00 0.00 0.00 4.00 ......................................GGGGTCAAACTGTACGTTC......................................................................................... 19 1 4.00 0.00 0.00 0.00 0.00 4.00 .............................................................TGACAATATTCGAAATTCA.................................................................. 19 1 4.00 0.00 3.00 0.00 1.00 0.00 ................................................................................TAAGAGTATAGCTTTTCCCCTT............................................ 22 1 4.00 0.00 0.00 1.00 3.00 0.00 ......................................GGGGTCAAACTGTACGTTCTATGA.................................................................................... 24 1 3.00 0.00 0.00 0.00 0.00 3.00 .......................................................................................................................CAACATTCGGAACAACAA......... 18 1 3.00 0.00 0.00 0.00 0.00 3.00 ................................................................................TAAGTGTATAGCTTTTCCCCTT............................................ 22 1 3.00 0.00 1.00 0.00 2.00 0.00 ................................................................................TAAGCGTATAGCTTTTCCCCCT............................................ 22 1 3.00 0.00 0.00 1.00 2.00 0.00

droWil1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
3	scaffold_180764:130106-130233 -	60.4	TAA-TTGTACAATCTGGA--CAATATTGCTCAACATTTTGGGGGGTAAAACTGTACGTTATATGTGCCCTTCT-GTGATATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTATTGCAACGAAAAGTGTTTTTC TATGTAATAAATTAAAGAATCAATTCTACACAACATTTAT-GGGGTTAAACTGTACGTTGTATGTGCAAATCTTAAGAAATCCATAAGCGTATAGCTTTTCCCCTTAAAAGTTGATGTTAAATCAACAA------------ Size Hit Count Total Norm V117 Male body V118 Embryo V119 Head M020 Head .........................................GGGGTTAAACTGTACGTTGTATG............................................................................. 23 1 1768.00 19.00 784.00 484.00 481.00 ....................................................................................TAAGCGTATAGCTTTTCCCCTT................................... 22 1 948.00 76.00 618.00 249.00 5.00 ....................................................................................TAAGCGTATAGCTTTTCCCCT.................................... 21 1 410.00 15.00 211.00 139.00 45.00 .........................................GGGGTTAAACTGTACGTTGTAT.............................................................................. 22 1 149.00 2.00 104.00 33.00 10.00 ....................................................................................TAAGCGTATAGCTTTTCCCC..................................... 20 1 78.00 2.00 39.00 36.00 1.00 .........................................GGGGTTAAACTGTACGTTGTA............................................................................... 21 1 62.00 1.00 37.00 15.00 9.00 ....................................................................................TAAGCGTATAGCTTTTCCCCTTT.................................. 23 1 31.00 5.00 17.00 9.00 0.00 .........................................GGGGTTAAACTGTACGTTGTATGT............................................................................ 24 1 29.00 0.00 9.00 7.00 13.00 .........................................GGGGTTAAACTGTACGTTGTATGA............................................................................ 24 1 19.00 0.00 15.00 2.00 2.00 ....................................................................................TAAGCGTATAGCTTTTCCCCTTA.................................. 23 1 18.00 1.00 17.00 0.00 0.00 ....................................................................................TAAGCGTATAGCTTTTCCCCTTAA................................. 24 1 17.00 0.00 17.00 0.00 0.00 ................................................................TGCAAATCTTAAGAAATCCA......................................................... 20 1 14.00 1.00 10.00 3.00 0.00 .........................................GGGGTTAAACTGTACGTTGCATG............................................................................. 23 1 9.00 0.00 5.00 2.00 2.00 .........................................GGGGTTAAACTGTACGTTGT................................................................................ 20 1 9.00 1.00 7.00 1.00 0.00 ....................................................................................TAATCGTATAGCTTTTCCCCT.................................... 21 1 8.00 0.00 0.00 1.00 7.00 ....................................................................................TAAGCGTATAGCTTTTCCCCTA................................... 22 1 6.00 0.00 5.00 1.00 0.00 ....................................................................................TAAGCGTATAGCTTTTCCCCTTAAA................................ 25 1 6.00 0.00 6.00 0.00 0.00 .........................................GGGGTGAAACTGTACGTTATATG............................................................................. 23 1 6.00 0.00 1.00 5.00 0.00 .........................................TGGGTTAAACTGTACGTTGTATG............................................................................. 23 1 5.00 0.00 1.00 3.00 1.00 .........................................GGGGTTAAACTGTACGTTGGATG............................................................................. 23 1 5.00 0.00 0.00 0.00 5.00 ....................................................................................TAATCGTATAGCTTTTCCCCTT................................... 22 1 4.00 0.00 2.00 1.00 1.00 ..........................................GGGTTAAACTGTACGTTGTATG............................................................................. 22 1 4.00 0.00 3.00 1.00 0.00 ....................................................................................TACGCGTATAGCTTTTCCCCTT................................... 22 1 4.00 1.00 2.00 1.00 0.00 ....................................................................................TAAGCGTATAGCTTTTCCCATT................................... 22 1 4.00 0.00 4.00 0.00 0.00 .........................................GGGGTTAAACTGTACGTTGTATA............................................................................. 23 1 4.00 0.00 1.00 3.00 0.00 ....................................................................................TAAGCGTATAGCTTTTCCCCTTG.................................. 23 1 4.00 1.00 1.00 2.00 0.00 .........................................GGGGTTAAAATGTACGTTGTATG............................................................................. 23 1 3.00 0.00 1.00 2.00 0.00 .........................................GGGGTTAAACTGTACGTTGTATGG............................................................................ 24 1 3.00 0.00 0.00 1.00 2.00 .........................................GGGGTTAAACTGTAAGTTGTATG............................................................................. 23 1 3.00 0.00 0.00 3.00 0.00 ....................................................................................TAAGCGTATAGCTTTCCCCTT.................................... 21 1 3.00 0.00 3.00 0.00 0.00 ....................................................................................TAAGCGTATAGCTTTTCCC...................................... 19 1 3.00 0.00 3.00 0.00 0.00 .........................................GGAGTTAAACTGTACGTTGTATG............................................................................. 23 1 3.00 0.00 3.00 0.00 0.00 ....................................................................................TAAGCGTATAGCTTTTCCACTT................................... 22 1 3.00 0.00 3.00 0.00 0.00 ....................................................................................TAAGCGTATAACTTTTCCCCT.................................... 21 1 3.00 0.00 0.00 0.00 3.00 .........................................GCGGTTAAACTGTACGTTGTATG............................................................................. 23 1 3.00 0.00 1.00 2.00 0.00 ....................................................................................TAAGCGTATAGCTTTTCCCCC.................................... 21 1 3.00 0.00 0.00 0.00 3.00 .........................................GGGGTTAAACTGTACGTTATATG............................................................................. 23 1 3.00 0.00 0.00 3.00 0.00 .........................................GGGGTTAAACTGTACGTTTTATG............................................................................. 23 1 3.00 0.00 0.00 3.00 0.00 .........................................GGTGTTAAACTGTACGTTGTATG............................................................................. 23 1 3.00 0.00 1.00 0.00 2.00

droVir3 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
8	scaffold_12963:8856389-8856513 +	64.67	TAATTGTACAATCTGGACAATAT---TGCTCAACATTTTGGGGGGTAAAACTGTACGTTATATGTGCCCTTCTGTGATATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTATTGCAACGAAAAGTGTTTTTC TTAGTGTAGAAAAAGAAAAAAACACACACACAAATGTTTAGGGGGTCAAACTGTACGTTGTATGTGCAAAT-GATGAAATTCATAAGCGTATAGCTTTTCCCCTTAAACGTTGATGTGACGACAAC-------------- Size Hit Count Total Norm V116 Male body V053 Unknown V047 Embryo M027 Male body M028 Head ...................................................................................TAAGCGTATAGCTTTTCCCCTT................................... 22 1 1173.00 143.00 956.00 72.00 0.00 2.00 .........................................GGGGTCAAACTGTACGTTGTATG............................................................................ 23 1 312.00 54.00 60.00 114.00 40.00 44.00 ...................................................................................TAAGCGTATAGCTTTTCCCCT.................................... 21 1 248.00 44.00 174.00 12.00 1.00 17.00 ...................................................................................TAAGCGTATAGCTTTTCCCCTTT.................................. 23 1 114.00 20.00 86.00 8.00 0.00 0.00 ...................................................................................TAAGCGAATAGCTTTTCCCCTT................................... 22 1 18.00 0.00 18.00 0.00 0.00 0.00 ...................................................................................TAAGCGTATAGCTTTTCCCCTTC.................................. 23 1 13.00 1.00 11.00 1.00 0.00 0.00 .........................................GGGGTCAAACTGTACGTTGTATT............................................................................ 23 1 12.00 0.00 1.00 11.00 0.00 0.00 ...................................................................................TAAGCGTATAGCTTTTCCCCTTA.................................. 23 1 10.00 3.00 7.00 0.00 0.00 0.00 ...................................................................................TAAGAGTATAGCTTTTCCCCTT................................... 22 1 7.00 0.00 7.00 0.00 0.00 0.00 ...................................................................................TAAGCGTATAGCTTTTCCCC..................................... 20 1 7.00 0.00 3.00 4.00 0.00 0.00 ...................................................................................TAAGCGGATAGCTTTTCCCCTT................................... 22 1 7.00 0.00 7.00 0.00 0.00 0.00 .........................................GGGGTCAAACTGTACGTTGTAT............................................................................. 22 1 7.00 1.00 1.00 4.00 1.00 0.00 ...................................................................................TAAGCGTATAGCTTTTCCCCCT................................... 22 1 6.00 1.00 4.00 1.00 0.00 0.00 ..........................................GGGTCAAACTGTACGTTGTATG............................................................................ 22 1 6.00 0.00 0.00 3.00 1.00 2.00 ...................................................................................TAAGCGTATAGCTTTTCCCCTTAA................................. 24 1 6.00 0.00 4.00 2.00 0.00 0.00 ...................................................................................TAAGCGTATAGCTTTTCCCCTTTA................................. 24 1 5.00 0.00 5.00 0.00 0.00 0.00 ...................................................................................TAAGCGGATAGCTTTTCCCCT.................................... 21 1 5.00 0.00 4.00 0.00 0.00 1.00 ...................................................................................TAAGCGTATAGCTTTTCCCCTTTT................................. 24 1 5.00 0.00 5.00 0.00 0.00 0.00 ...................................................................................TAAGCGAATAGCTTTTCCCCT.................................... 21 1 4.00 0.00 4.00 0.00 0.00 0.00 ...................................................................................TAAGCGTATAGCTTTTCCCCTC................................... 22 1 4.00 1.00 3.00 0.00 0.00 0.00 .........................................GGGGTCAAACTGTACGTTGTA.............................................................................. 21 1 4.00 0.00 0.00 3.00 0.00 1.00 .........................................GGGGTCAAACTGTACGTTTTATG............................................................................ 23 1 4.00 0.00 1.00 3.00 0.00 0.00 ...................................................................................TAAGCGTATAGCTTTTCTCCTT................................... 22 1 4.00 0.00 4.00 0.00 0.00 0.00 ...................................................................................TAAGCGTATAGCTTTTCCCCTTAT................................. 24 1 4.00 0.00 0.00 4.00 0.00 0.00 ...................................................................................TAAGCGTATAGCTTTTCCCCG.................................... 21 1 4.00 0.00 0.00 0.00 0.00 4.00 ...................................................................................TAAGCGTATAGCTTTTCCCCTTTC................................. 24 1 3.00 0.00 3.00 0.00 0.00 0.00 ...................................................................................CAAGCGTATAGCTTTTCCCCTT................................... 22 1 3.00 0.00 3.00 0.00 0.00 0.00 ...................................................................................TAAGCGCATAGCTTTTCCCCTT................................... 22 1 3.00 0.00 3.00 0.00 0.00 0.00 .........................................GGGGTCAAACTGTACGTTGTATGT........................................................................... 24 1 3.00 0.00 0.00 0.00 0.00 3.00 ...................................................................................TAAGCGTATAACTTTTCCCCTT................................... 22 1 3.00 0.00 2.00 1.00 0.00 0.00 ...................................................................................TAAGCGTATAGCTTTTCCCCTTG.................................. 23 1 3.00 0.00 2.00 1.00 0.00 0.00 ...................................................................................TAAGCGTATAGCTCTTCCCCTT................................... 22 1 3.00 0.00 2.00 1.00 0.00 0.00 .........................................GGGGTCAAATTGTACGTTGTATG............................................................................ 23 1 3.00 1.00 1.00 1.00 0.00 0.00 ..............................................CAAACTGTACGTTGTATG............................................................................ 18 1 3.00 0.00 0.00 0.00 0.00 3.00 ...................................................................................TAAGCCAATAGCTTTTCCCCTT................................... 22 1 3.00 0.00 3.00 0.00 0.00 0.00 ...................................................................................TAACCGTATAGCTTTTCCCCTT................................... 22 1 3.00 0.00 3.00 0.00 0.00 0.00 ....................................................................................AAGCGTATAGCTTTTCCCCTT................................... 21 1 3.00 0.00 3.00 0.00 0.00 0.00 ...................................................................................TAAGCGTATAGCTTTCCCCCTT................................... 22 1 3.00 1.00 2.00 0.00 0.00 0.00 ...................................................................................TAAGCGTATGGCTTTTCCCCTT................................... 22 1 3.00 0.00 3.00 0.00 0.00 0.00 ...................................................................................TAAGCGTATAGCTTTTCCCTT.................................... 21 1 3.00 0.00 3.00 0.00 0.00 0.00
9	scaffold_12963:8856860-8856980 +	43.77	TAATTGTACAATCTGGACAATATTGCTCAACATTTTGGGGGGTAAAACTGTACGTTATATGTGCCCTTCTGTGATATTCA------TAAGCGTATAGCTTTTCCCCTTAAA-AGTTAGAGCTATTGCA------ACGAAAAGTGTTTTTC TTA--------------------------AAATCTTATCAAATGAAACG--AAGCTAAATTTGACTTCTCGAGA-ATTCACTGTATTAAATTCAAAGAGTTTCTCATTAACGAGCTATCACTGTACCCGTAATAATTCACATGTAGTTAC Size Hit Count Total Norm V116 Male body V053 Unknown V047 Embryo M027 Male body M028 Head

droMoj3 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
3	scaffold_6500:2474475-2474605 -	65.66	TAATTGTACAATCTGGACAATATTGCTCAACATTTTGGGGGGTAAAACTGTACGTTATATGTGCCCTTCTGTGATATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTATTGCAACGAA-----AAGTGTTTTTC AATGTGAACAA----------AACACTCAAATGTTTAGGGGGTCAAACTGTACGTTGTATGTGTA-AACAATGAAATCCATAAGCGTATAGCTTTTCCCCTTAAAAGTTGAAGTGGAATCAACAGCAATTTAAGCATAGCTA Size Hit Count Total Norm V110 Male body V056 Unknown V049 Head V041 Embryo ................................................................................TAAGCGTATAGCTTTTCCCCTT........................................ 22 1 1023.00 112.00 153.00 115.00 643.00 ......................................GGGGTCAAACTGTACGTTGTATG................................................................................. 23 1 772.00 86.00 27.00 20.00 639.00 ................................................................................TAAGCGTATAGCTTTTCCCCT......................................... 21 1 205.00 46.00 49.00 48.00 62.00 ................................................................................TAAGCGTATAGCTTTTCCCCTTT....................................... 23 1 86.00 10.00 6.00 8.00 62.00 ......................................GGGGTCAAACTGTACGTTGTAT.................................................................................. 22 1 44.00 4.00 0.00 0.00 40.00 ................................................................................TAAGCGTATAGCTTTTCCCCTTAA...................................... 24 1 31.00 0.00 0.00 0.00 31.00 ................................................................................TAAGCGTATAGCTTTTCCCCTTA....................................... 23 1 23.00 1.00 3.00 2.00 17.00 ................................................................................TAAGCGTATAGCTTTTCCCC.......................................... 20 1 16.00 1.00 5.00 3.00 7.00 ......................................GGGGTCAAACTGTACGTTGTATT................................................................................. 23 1 13.00 0.00 0.00 1.00 12.00 ................................................................................TAAGCGTATAGCTTTTCCCCTTC....................................... 23 1 12.00 4.00 2.00 1.00 5.00 ................................................................................TAAGCGTATAGCTTTTCCCCTTG....................................... 23 1 8.00 0.00 5.00 1.00 2.00 ................................................................................TAAGCGTATAGCTTTTCCCCTTAT...................................... 24 1 7.00 1.00 0.00 0.00 6.00 ................................................................................TAAGCGGATAGCTTTTCCCCTT........................................ 22 1 7.00 0.00 2.00 1.00 4.00 ................................................................................TAAGCGTATAGCTTTTCCCCTTAAA..................................... 25 1 6.00 1.00 1.00 0.00 4.00 ......................................GGGGTCAAACTGTACGTTGT.................................................................................... 20 1 6.00 0.00 2.00 0.00 4.00 ......................................GGGGTCAAACTGTACGTTGTATGA................................................................................ 24 1 6.00 0.00 0.00 0.00 6.00 ................................................................................TAAGCGTATAGCCTTTCCCCTT........................................ 22 1 5.00 3.00 1.00 0.00 1.00 ................................................................................TAAGCGTATAGCTTTTCCCCTC........................................ 22 1 5.00 1.00 2.00 0.00 2.00 ......................................GGGGTCAAACTGTACGTTGTCTG................................................................................. 23 1 5.00 0.00 0.00 0.00 5.00 ................................................................................TAAGAGTATAGCTTTTCCCCTT........................................ 22 1 5.00 0.00 0.00 0.00 5.00 ......................................GGGGTCAAACTGTACGCTGTATG................................................................................. 23 1 4.00 0.00 0.00 0.00 4.00 ................................................................................TAAGCGTATAGCTTTTCCCCTA........................................ 22 1 4.00 1.00 0.00 0.00 3.00 ................................................................................TAAGCGTATAGCTTTTCCCCTTTT...................................... 24 1 4.00 0.00 2.00 0.00 2.00 ................................................................................TAAGCGTATAGCTTTTACCCTT........................................ 22 1 4.00 0.00 0.00 1.00 3.00 ................................................................................TAAGCGTATAGCTTTTCCCCTTTAT..................................... 25 1 4.00 1.00 0.00 0.00 3.00 ................................................................................TAAGCGCATAGCTTTTCCCCTT........................................ 22 1 3.00 1.00 0.00 0.00 2.00 ................................................................................TAAGTGTATAGCTTTTCCCCTT........................................ 22 1 3.00 0.00 1.00 0.00 2.00 ......................................GGGGTCAAACTGTACGGTGTATG................................................................................. 23 1 3.00 0.00 0.00 1.00 2.00

droGri2 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
5	scaffold_15252:12933990-12934109 -	68.32	TAATTGTACAATCTGGACAATATTGCTCAACATTTTGGGGGGTAAAACTGTACGTTATATGTGCCCTTCTGTGATATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTAGAGCTATTGCAACGAAAAGTGTTTTTC --------------GGAAAATAACACTCAAATGTTTAGGGGGTCAAACTGTACGTTATATGTGTAAAT-GAAGAAATTCATAAGCGTATAGCTTTTCCCCTTAAAAGTTGAAGTGATAGCAACCTAAAAAGTCTT-- Size Hit Count Total Norm V109 Male body ................................................................................TAAGCGTATAGCTTTTCCCCTT................................... 22 1 33.00 33.00 ......................................GGGGTCAAACTGTACGTTATATG............................................................................ 23 1 6.00 6.00 ................................................................................TAAGCGTATAGCTTTTCCCCT.................................... 21 1 6.00 6.00 ................................................................................TAAGCGTATAGCTTTTCCCCTTT.................................. 23 1 4.00 4.00 ..........................................................ATGTCAAAAT-GAAGAAATT........................................................... 19 1 3.00 3.00 ..........................................................ATGTCAAAAT-GAAGAAATTCA......................................................... 21 1 2.00 2.00 ..........................................................ATGTCTAAGT-GAAGAAATT........................................................... 19 1 1.00 1.00 ................................................................................TAAGCGxxTAGCTTTTCCCCTT................................... 20 1 1.00 1.00 ................................................................AAGT-GAAGAAATTCATAAGCGC.................................................. 22 1 1.00 1.00 ..................................................................................AGCGTATAGCTTTTCCCCTTT.................................. 21 1 1.00 1.00 ................................................................................TAAGCGTATAGGTTTTCCCCTT................................... 22 1 1.00 1.00 ................................................................................TAAGCGTCTAGCTTTTCCCCT.................................... 21 1 1.00 1.00

Generated: 04/20/2012 at 05:33:29 EDT