dme-mir-964- 12- and 20-way alignments

dme-mir-964	chr2L:5642102-5642201 +	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intron

Legend:

   mature strand at position 5642127-5642148
   star strand at position 5642167-5642187
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chr2L:5642087-5642216 +	TCTAGTTGGTG------A----------------T------------------ACCAAT-AACATATTGGTCCAACTTGCCTTAGAATAGGGGAGCTTAACTTATGTT-T-TTGATGTT-TAAGTTAAAAGCCTCTGTTCTAAGACAATTTGATGATCAA-AACAGCC-----------GGAGAAA
droSim1	Unknown	TCTAGTGGGTA------A----------------ATCCATGTGGTTATGACAAGTCAATCAAAATCTTGGTCCAACTTGCCTTAGAATAGGGGAGCTTAACTTGTGTT-T-TTAATGTT-TAAGTTAAAAGCCACTGTTCTAAGACAATTTGATGATCAA-AACTACTTCA-------TTTTGTAA
droSec1	super_5:3719805-3719957 +	TCTAGTGGGTA------A----------------ATCCATGTGGTTATGATAAGTCAATCAAAATCTTGGTCCAACTTGCCTTAGAATAGGGGAGCTTAACTTGTGTT-T-TTAATGTT-TAAGTTAAAAGCCACTGTTCTAAGACAATTTGATGATCAA-AACCACCTGA-------CAAAAAAA
droYak2	chr2L:13551054-13551191 -	TCAAGTTA---------T----------------ATCC-------TATGATCAATCAAT-GAAATCTTGGTCCCACTTGTCTTAGAATAGGGGAGCTTAACTTATGTA-T-ATCATGTA-TAAGTTAAGAACCTTTATTCTAAGACAATTCGACTACAAA-ATCAACT-----------GAAAAAC
droEre2	scaffold_4929:5730483-5730614 +	TCTAGTTGGTT------A----------C-----ATCCTTGCGTTAGTGATCAATCAAT-AACGTTTTGGTCCCACTTGTCTTAGAATAGGGGAGCTTAACTTGTGTG-T-GTTATGCT-TAAGTTAAGAGCCTTTATTCTAAGTCAATTCGACTGC-----------------------------
droAna3	scaffold_12916:11085546-11085698 +	AAGAATACGAG------T----------------GTTCGCGGGAT---GAGCATCGA------ATCAAAGTCAAACTTGTTTTAGAATAGGGGAGCTTAACTTATTGGAG-AGTTGATATTAAGTTAAGATCCCTAATTCTAAGATAATGTGACCATTAA-TGCAACGTTGTTTTATGCAGTAAAA
dp4	chr4_group4:3181498-3181600 -	GC---------------------------------------------------------------------CAAAACTATCTTAGATCGAAGGTTCCTGGCTTACAGG-G-ATTTGATG-TAAGTTAAGAACCTCCGCTCTAAGCTAGTATGGCTATCATCAACGGCC-----------CTGAAAG
droPer1	super_10:2200424-2200526 -	GC---------------------------------------------------------------------CAAAATTATCTTAGATCGAAGGTTCCTGGCTTACAGG-G-ATTTGATG-TAAGTTAAGAACCTCCGCTCTAAGCTAGTATGGCTATCATCAACGGCC-----------CTGAAAG
droWil1	scaffold_180708:8624929-8625071 -	TTTAAGCCCAACACATTTGTTGTCTGTGTCAGTT--------G------AA--------------CAAGGTCAAACTTGTCTTAGAATAGGGGAGCTTAACTTATATT-G-TTTTGCTT-AAAGTTAAGAGCCTCAATTCTAAGATAATGCGACTATCAC-CGCAGCA-----------GTTCAGA
droVir3	scaffold_12963:3616459-3616573 +	CAAAAGTT---------T---------TCATATT--------G------AAAATACA--------TTAAGTTTAACTTATCTTAGAATAGGGGAGCTTAACTTTG-T--A-TGAACATT-TAAGCTAAGAGCCTCAATTCTTAGATAATGCGACTAACAA-----ACA-----------AGGAAAA
droMoj3	scaffold_6500:14019492-14019608 +	TGATGATT---------T---------TCCAATT--------G-T--GATGAAATCA--------TTGAGTTCAACTTATCTTAGAATAGGGGAGCTTAACTTAA--T-C-TGAACACT-CAAGCTAAGAGCCTCGATTCTTCGATAATGCGACTAACA---------------------------
droGri2	scaffold_15252:3148291-3148427 +	TAAAATCA---------T---------TTCAGTT--------GATTAGAAGAGTGCA--------TTATGTCAAACTTATCTTAGAATAGGGGAGCTTAACTTTTATCATATTAGCGCT-CGAGCTAAGATCCTCAATTCTTGGATAAGGCGACTAGCAA---CTGCA-----------GTAAAAA

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chr2L:5642087-5642216 +	NA	TCTAGTTGGTGATAC-----------------------CAATAA-CATATTGGTCCAACTTGCCTTAGAATAGGGGAGCTTAACTTATGTTT--TTGATGTTTAAGTTAAAAGCCTCTGTTCTAAGACAATTTGATGATCAAAACAGC------CG-GA----GAAA
droSim1	chr2L:5435151-5435306 +	1	TCTAGTGGGTAA-ATCCATGTG---GTTATGAC-AAGTCAATCAAAATCTTGGTCCAACTTGCCTTAGAATAGGGGAGCTTAACTTGTGTTT--TTAATGTTTAAGTTAAAAGCCACTGTTCTAAGACAATTTGATGATCAAAACTTCAACTTCATTTT----GTAA
droSec1	super_5:3719805-3719957 +	2	TCTAGTGGGTAA-ATCCATGTG---GTTATGAT-AAGTCAATCAAAATCTTGGTCCAACTTGCCTTAGAATAGGGGAGCTTAACTTGTGTTT--TTAATGTTTAAGTTAAAAGCCACTGTTCTAAGACAATTTGATGATCAAAACCAC------CT-GACAAAAAAA
droYak2	chr2L:13551054-13551191 -	2	TCAAGTT----ATATCC----------TATGAT-CAATCAATGA-AATCTTGGTCCCACTTGTCTTAGAATAGGGGAGCTTAACTTATGTAT--ATCATGTATAAGTTAAGAACCTTTATTCTAAGACAATTCGACTACAAAATCAAC------TG-AA----AAAC
droEre2	scaffold_4929:5730483-5730617 +	1	TCTAGTTGGTTACATCCTTGCG---TTAGTGAT-CAATCAATAA-CGTTTTGGTCCCACTTGTCTTAGAATAGGGGAGCTTAACTTGTGTGT--GTTATGCTTAAGTTAAGAGCCTTTATTCTAAGTCAATTCGACTGCCAA-------------------------
droEug1	scf7180000409063:318437-318580 +	1	CTCGA-AAGTAATACTCGAGCA---ATA----C-CAGTAATAATAATCCGAGGTCAAACTTGTCTTAGAATAGGGGAGCTTAACTTATGTAC--GCAATGTTTAAGTTA-GATCCTTTTTTCTAAGATAATTCGGCTGTCAGAACAAC------AT-GC----TATT
droBia1	scf7180000302422:3831769-3831919 +	1	TCTCAATAGCTATG--CATGCTGCAATGGCGAT-AAACTGATAAAACCGACTGTCAAACTTGTCTTAGAATAGGGGAGCTTAACTTATGTGT--GCCGATTTTAAGTTAAGAGCCTTTTTTCTAAGATAATCCGACTATCAAAACAAC------AC-GC----TAAC
droTak1	scf7180000415871:386454-386601 +	3	CCTCCTAAGTTATG--CATGCT---ATTGCGCC-AAATTAATATAAACCGAGGTCTAACTTGTCTTAGAATAGGGGAGCTTAACTTATGTAG--GTCATGTTTAAGTTAAGAGCCTTTTTTCTAAGATAATTCGACTATCGTAACAAC------GT-GC----TGAT
droEle1	scf7180000490753:31695-31835 +	2	CCAACAAAGTAACTATC--------GTTTTGTC-AAATTATTTAAACCAGAGGTCATACTTGCCTTAGAATAGGGGAGCTTGACTTATGTGC--GTTATGTTTAAGTTAAGAGCCTTAATTCTAAGATAATTCGACTATCAAAACAGC------AT-GC--------
droRho1	scf7180000778253:32389-32536 -	7	CCACCATAATAA-ATTATT------GTGTTGCC-AAATTATTCAAGCCCAAGGTCATACTTGCCTTAGAATAGGGGAGCTTAACTTATGTTC--GTTGTGTTTAAGTTAAGAGCCTTGATTCTAAGATAATTCGACCATCAAAACAGC------AT-GCTA--AATA
droFic1	scf7180000453932:196450-196600 -	2	TCTAATTAAAAT-AATCA-GTCCCAGTAATGAG-AATCCATCTCAGCCCAATGGCGAACTTGTCTTAGAATAGGGGAGCTTAACTTGGA-AT--CTTGTGTTGAAGTTAAGAGCCATAATTCTAAGACAATTCGACCATAAAATCAAC------AATGA----GAGT
droKik1	scf7180000302389:430178-430312 -	3	TTGAGGTGGAAAAG-----------------GT-AATTCAGACA-GAGATAAGTCAGACTTGTCTTAGAATAGGGGAGCTTAACTTATGTGG--CAGATATTTAAGTTAAGAGCCTTAATTCTAAGACAAAGCGACTGGAAAAGCAGC------AT-TA----AAGG
droAna3	scaffold_12916:11085546-11085681 +	2	AAGAATACGAGT-GTTCGCGGG---A---TGAG-CATC------GAATCAAAGTCAAACTTGTTTTAGAATAGGGGAGCTTAACTTATTGGAGAGTTGATATTAAGTTAAGATCCCTAATTCTAAGATAATGTGACCATTAATGCAAC------GT-----------
droBip1	scf7180000396572:743323-743441 +	2	TCATCGGAAAGA-A----------------------TCCA------TCAAAAGTCACACTTGTTTTAGAATAGGGGAGCTTGACTTGTTAAAGAGTTGATATAAAGTTAAGATCCTTTATTCTAAGATAATGTGACCATTATAGCAAC-------------------
dp4	chr4_group4:3181498-3181623 -	1	AGGGAT-------CC-----------CCGTGCC-AAA-----------TAGAGCCAAAACTATCTTAGATCGAAGGTTCCTGGCTTACAGGG--ATTTGATGTAAGTTAAGAACCTCCGCTCTAAGCTAGTATGGCTATCATC--AAC---GGCCC-TG----AAAG
droPer1	super_10:2200424-2200549 -	1	AGGGAT-------CC-----------CCGTGCC-AAA-----------TAGAGCCAAAATTATCTTAGATCGAAGGTTCCTGGCTTACAGGG--ATTTGATGTAAGTTAAGAACCTCCGCTCTAAGCTAGTATGGCTATCATC--AAC---GGCCC-TG----AAAG
droWil1	scaffold_186905:448-576 +	3	TAGTCTGTGTCA-A----------------------T-------TGAACAAAGTCAAAATTGTCTTAGAATAGGGGAGCTTAACTTATATTA--TTTTGCTTTAAGTTAAGAGCCTCAATTCTAAGATAATGCGACTATCACCGCAGC------AA-TTCAGATAAA
droVir3	scaffold_12963:3616457-3616573 +	1	TTCAAAA-GT---TTTCATA--------TTGAA-AATACA--------TTAAGTTTAACTTATCTTAGAATAGGGGAGCTTAACTT-TGTAT--G-AACATTTAAGCTAAGAGCCTCAATTCTTAGATAATGCGACTAACAA-------------------------
droMoj3	scaffold_6500:14019483-14019608 +	3	GATATATGATGATGATT---TTCCAATTGTGATGAAATCA--------TTGAGTTCAACTTATCTTAGAATAGGGGAGCTTAACTTAAT--C--TGAACACTCAAGCTAAGAGCCTCGATTCTTCGATAATGCGACTAACA--------------------------
droGri2	scaffold_15252:3148300-3148427 +	2	TTCAGTTGATTAGAA-----------------G-AGTGCA--------TTATGTCAAACTTATCTTAGAATAGGGGAGCTTAACTTTTATCATATTAGCGCTCGAGCTAAGATCCTCAATTCTTGGATAAGGCGACTAGCAA--CTGC------AG-TA----AAAA

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

TCTAGTTGGTG------A----------------T------------------ACCAAT-AACATATTGGTCCAACTTGCCTTAGAATAGGGGAGCTTAACTTATGTT-T-TTGATGTT-TAAGTTAAAAGCCTCTGTTCTAAGACAATTTGATGATCAA-AACAGCC-----------GGAGAAA

Size

Hit Count

Total Norm

droSim1

TCTAGTGGGTA------A----------------ATCCATGTGGTTATGACAAGTCAATCAAAATCTTGGTCCAACTTGCCTTAGAATAGGGGAGCTTAACTTGTGTT-T-TTAATGTT-TAAGTTAAAAGCCACTGTTCTAAGACAATTTGATGATCAA-AACTACTTCA-------TTTTGTAA	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
............................................................................................................................TTAAAAGCCACTGTTCTAAGAC........................................	22	1	280.00	1.00	4.00	250.00	25.00
.................................................................................TTAGAATAGGGGAGCTTAACT....................................................................................	21	1	165.00	2.00	0.00	151.00	12.00
.................................................................................TTAGAATAGGGGAGCTTAACTT...................................................................................	22	1	98.00	2.00	0.00	94.00	2.00
.................................................................................TTAGAATAGGGGAGCTTAACTTT..................................................................................	23	1	15.00	0.00	0.00	15.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAAC.....................................................................................	20	1	15.00	0.00	0.00	15.00	0.00
.............................................................................................................................TAAAAGCCACTGTTCTAAGAC........................................	21	1	10.00	0.00	0.00	10.00	0.00
...............................................................ATCTTGGTCCAACTTGCC.........................................................................................................	18	1	8.00	0.00	0.00	5.00	3.00
.................................................................................TTAGAATAGGGGAGCTTAACC....................................................................................	21	1	6.00	0.00	0.00	6.00	0.00
............................................................................................................................TTAAAAGCCACTGTTCTAAGA.........................................	21	1	5.00	1.00	0.00	3.00	1.00
............................................................................................................................TTAAAAGCCACTGTTCTAAAAC........................................	22	1	4.00	0.00	0.00	4.00	0.00
...........................................................................................................................GTTAAAAGCCACTGTTCTAAG..........................................	21	1	4.00	0.00	0.00	4.00	0.00
...........................................................................................................................GTTAAAAGCCACTGTTCTAAGA.........................................	22	1	4.00	0.00	0.00	4.00	0.00
............................................................................................................................TTAAAAGCCACTGTTCTAAGGC........................................	22	1	3.00	0.00	1.00	2.00	0.00
.............................................................................................................................TAAAAGCCACTGTTCTAAGACA.......................................	22	1	3.00	0.00	0.00	3.00	0.00
............................................................................................................................TTAAAAGCCACTGTTCTAAGACA.......................................	23	1	2.00	0.00	0.00	2.00	0.00
.................................................................................TTAGAATAxGGGAGCTTAACT....................................................................................	20	1	2.00	0.00	0.00	2.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACTA...................................................................................	22	1	2.00	0.00	0.00	2.00	0.00
............................................................................................................................TTAAAAGCCACTGTTCTAAGACT.......................................	23	1	2.00	0.00	0.00	2.00	0.00
............................................................................................................................TTAAAACCCACTGTTCTAAGAC........................................	22	1	2.00	0.00	0.00	2.00	0.00
.................................................................................ATAGAATAGGGGAGCTTAAC.....................................................................................	20	1	1.00	0.00	0.00	1.00	0.00
.................................................................................TTAGAATACGGGAGCTTAACT....................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
...........................................................................................................................GTTAAAAGCCACTGTTTTAAGA.........................................	22	1	1.00	0.00	1.00	0.00	0.00
...............................................................ATCGTGGTCCAACTTGCC.........................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAGCTT...................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
.............................................................................................................................TAAAAGCCACTGTTCTAAGACT.......................................	22	1	1.00	0.00	0.00	1.00	0.00
..............................................................AATCTTGGTCCAACTTGCC.........................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00
.............................................................................................................................TAAAAGCCACTGTTCTAAGACC.......................................	22	1	1.00	1.00	0.00	0.00	0.00
.................................................................................TTAGAATAGTGGAGCTTAACT....................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
............................................................................................................................TTAAAAGCCACTGGTCTAAGAC........................................	22	1	1.00	0.00	0.00	1.00	0.00
..............................................................AATCTTGGTCCAACTAGCC.........................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00
.................................................................................TTAGAATxxGGGAGCTTAACT....................................................................................	19	1	1.00	0.00	0.00	1.00	0.00
............................................................................................................................TTAAAAGCCACTGTTCTAAGG.........................................	21	1	1.00	0.00	0.00	1.00	0.00
..................................................................................TAGAATAGGGGAGCTTAACT....................................................................................	20	1	1.00	0.00	0.00	1.00	0.00
.................................................................................TTAGAATAGGGGGGCTTAACTT...................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
..................................................................................TAGAATAGGGGAGCTTAACG....................................................................................	20	1	1.00	0.00	0.00	1.00	0.00
............................................................................................................................TTAAAAGCCACTGTTCTAAGT.........................................	21	1	1.00	0.00	0.00	1.00	0.00
.................................................................................TTGGAATAGGGGAGCTTAACT....................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
.................................................................................TTAGAATAGGGTAGCTTAACT....................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
.................................................................................TTAGAATAGAGGAGCTTAACT....................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
............................................................................................................................TTAAAAGCCACAGTTCTAAGACA.......................................	23	1	1.00	0.00	0.00	1.00	0.00
............................................................................................................................TTAAAAGCCACTGTTCTAAGACC.......................................	23	1	1.00	0.00	0.00	1.00	0.00

droSec1

TCTAGTGGGTA------A----------------ATCCATGTGGTTATGATAAGTCAATCAAAATCTTGGTCCAACTTGCCTTAGAATAGGGGAGCTTAACTTGTGTT-T-TTAATGTT-TAAGTTAAAAGCCACTGTTCTAAGACAATTTGATGATCAA-AACCACCTGA-------CAAAAAAA	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
.................................................................................TTAGAATAGGGGAGCTTAACTT...................................................................................	22	1	551.00	480.00	44.00	27.00
.................................................................................TTAGAATAGGGGAGCTTAACT....................................................................................	21	1	534.00	480.00	23.00	31.00
.................................................................................TTAGAATAGGGGAGCTTAAC.....................................................................................	20	1	47.00	43.00	2.00	2.00
.................................................................................TTAGAATAGGGGAGCTTAACTTT..................................................................................	23	1	41.00	36.00	4.00	1.00
...............................................................ATCTTGGTCCAACTTGCC.........................................................................................................	18	1	34.00	0.00	33.00	1.00
.................................................................................TTAGAATAGGGGAGCTTACCT....................................................................................	21	1	7.00	7.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAA......................................................................................	19	1	7.00	7.00	0.00	0.00
...........................................................................................................................GTTAAAAGCCACTGTTCTAAGA.........................................	22	1	7.00	4.00	2.00	1.00
.................................................................................TTAGAATAGGGGAGCTTACCTT...................................................................................	22	1	5.00	5.00	0.00	0.00
..................................................................................TAGAATAGGGGAGCTTAACTTG..................................................................................	22	1	4.00	4.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACTTTT.................................................................................	24	1	4.00	3.00	1.00	0.00
...........................................................................................................................GTTAAAAGCCACTGTTCTAAG..........................................	21	1	3.00	3.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAGCTT...................................................................................	22	1	2.00	2.00	0.00	0.00
.................................................................................TTCGAATAGGGGAGCTTAACTT...................................................................................	22	1	2.00	2.00	0.00	0.00
.................................................................................TTAGAATAxGGGAGCTTAACT....................................................................................	20	1	2.00	2.00	0.00	0.00
..................................................................................TAGAATAGGGGAGCTTAACTT...................................................................................	21	1	2.00	2.00	0.00	0.00
.................................................................................TTAGAATAxGGGAGCTTAACTT...................................................................................	21	1	2.00	2.00	0.00	0.00
.................................................................................TTAGAATAGGGGCGCTTAACT....................................................................................	21	1	2.00	2.00	0.00	0.00
..............................................................AATCTTGGTCCAACTTGCC.........................................................................................................	19	1	2.00	0.00	2.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACA....................................................................................	21	1	2.00	2.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACTC...................................................................................	22	1	2.00	2.00	0.00	0.00
..................................................................................TAGAATAGGGGAGCTTAACT....................................................................................	20	1	2.00	2.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACTTA..................................................................................	23	1	2.00	2.00	0.00	0.00
.................................................................................TTAGAATCGGGGAGCTTAACT....................................................................................	21	1	1.00	1.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGTTTAACTT...................................................................................	22	1	1.00	0.00	1.00	0.00
...................................................................................AGAATAGGGGAGCTTAACT....................................................................................	19	1	1.00	1.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTATCTT...................................................................................	22	1	1.00	1.00	0.00	0.00
.................................................................................TTAGAATAGGGAAGCTTAACTT...................................................................................	22	1	1.00	0.00	0.00	1.00
.................................................................................TTAGAGTAGGGGAGCTTAACTT...................................................................................	22	1	1.00	1.00	0.00	0.00
...........................................................................................................................GTTAAAAGCCACTGTTCTCAG..........................................	21	1	1.00	1.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTTACT....................................................................................	21	1	1.00	1.00	0.00	0.00
................................................................................................................................................ACAAGTTGATxATCAA-AAC......................	18	1	1.00	0.00	1.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAAT.....................................................................................	20	1	1.00	1.00	0.00	0.00
...............................................................ATCTTGGTTCAACTTGCC.........................................................................................................	18	1	1.00	0.00	1.00	0.00
.................................................................................TTAGAATAGGCGAGCTTAACT....................................................................................	21	1	1.00	1.00	0.00	0.00
.................................................................................TTAGAATAGGGCAGCTTAACT....................................................................................	21	1	1.00	0.00	1.00	0.00
.................................................................................TTAGAATAGCGGAGCTTAACT....................................................................................	21	1	1.00	1.00	0.00	0.00
.................................................................................TTAAAATAGGGGAGCTTAACT....................................................................................	21	1	1.00	1.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTCAACTT...................................................................................	22	1	1.00	1.00	0.00	0.00
.................................................................................TTAGAATAGGGCAGCTTAACTT...................................................................................	22	1	1.00	1.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTATCT....................................................................................	21	1	1.00	1.00	0.00	0.00
...............................................................ATCTTGGTCCAACTTGCT.........................................................................................................	18	1	1.00	0.00	1.00	0.00
.................................................................................TTAGAACAGGGGAGCTTAACT....................................................................................	21	1	1.00	1.00	0.00	0.00
.....................................................................................AATAGGGGAGCTTAACTTT..................................................................................	19	1	1.00	1.00	0.00	0.00
.................................................................................CTAGAGTAGGGGAGCTTAACT....................................................................................	21	1	1.00	1.00	0.00	0.00
..................................................................................TAGAATAGGGGAGCTTAACTTT..................................................................................	22	1	1.00	1.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGTTTAACT....................................................................................	21	1	1.00	1.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCCTAACTT...................................................................................	22	1	1.00	1.00	0.00	0.00
............................................................................................................................TTAAAAGCCACTGTTCTAAGA.........................................	21	1	1.00	1.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACTTGTG................................................................................	25	1	1.00	1.00	0.00	0.00
.............................................................AAATCTTGGTCCAACTTGCC.........................................................................................................	20	1	1.00	0.00	1.00	0.00
..................................................................................TAGAATAGGGGAGCTTAAATTG..................................................................................	22	1	1.00	1.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTAAACTTT..................................................................................	23	1	1.00	1.00	0.00	0.00
..........A------A----------------ATxCATGTGGTTATGGT.......................................................................................................................................	18	1	1.00	0.00	1.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACCT...................................................................................	22	1	1.00	1.00	0.00	0.00
.....................................................................................................................................................TTGATGCTCAA-AACCAGCT.................	19	1	1.00	0.00	1.00	0.00
.................................................................................TAAGAATAGGGGAGCTTAA......................................................................................	19	1	1.00	1.00	0.00	0.00
.................................................................................TTAGAATAGGGGATCTTAACTT...................................................................................	22	1	1.00	0.00	1.00	0.00
.......................................................................................................................................................GATGATCAC-AACGACCTG................	18	1	1.00	0.00	1.00	0.00
.................................................................................TTAGAATAGGGTAGCTTAACT....................................................................................	21	1	1.00	1.00	0.00	0.00

droYak2

TCAAGTTA---------T----------------ATCC-------TATGATCAATCAAT-GAAATCTTGGTCCCACTTGTCTTAGAATAGGGGAGCTTAACTTATGTA-T-ATCATGTA-TAAGTTAAGAACCTTTATTCTAAGACAATTCGACTACAAA-ATCAACT-----------GAAAAAC	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.................................................................................TTAGAATAGGGGAGCTTAACT....................................................................................	21	1	501.00	0.00	4.00	465.00	12.00	20.00
.................................................................................TTAGAATAGGGGAGCTTAACTT...................................................................................	22	1	419.00	1.00	2.00	400.00	5.00	11.00
.................................................................................TTAGAATAGGGGAGCTTAAC.....................................................................................	20	1	40.00	0.00	0.00	37.00	0.00	3.00
.................................................................................TTAGAATAGGGGAGCTTAACTTT..................................................................................	23	1	29.00	0.00	0.00	28.00	1.00	0.00
..................................................................................TAGAATAGGGGAGCTTAACTT...................................................................................	21	1	16.00	0.00	0.00	13.00	3.00	0.00
..................................................................................TAGAATAGGGGAGCTTAACT....................................................................................	20	1	16.00	0.00	0.00	14.00	0.00	2.00
..................................................................................TAGAATAGGGGAGCTTAACTTA..................................................................................	22	1	14.00	0.00	0.00	14.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAA......................................................................................	19	1	9.00	0.00	0.00	9.00	0.00	0.00
.................................................................................TTAGAATAGGGGCGCTTAACT....................................................................................	21	1	9.00	0.00	0.00	9.00	0.00	0.00
...................................................................................AGAATAGGGGAGCTTAACTTT..................................................................................	21	1	7.00	0.00	0.00	7.00	0.00	0.00
.................................................................................TTGGAATAGGGGAGCTTAACTT...................................................................................	22	1	5.00	0.00	1.00	4.00	0.00	0.00
.................................................................................TTAGAATAGGGGTGCTTAACT....................................................................................	21	1	4.00	0.00	0.00	3.00	1.00	0.00
.................................................................................TTGGAATAGGGGAGCTTAACT....................................................................................	21	1	4.00	0.00	0.00	4.00	0.00	0.00
...................................................................................AGAATAGGGGAGCTTAACTT...................................................................................	20	1	3.00	0.00	0.00	3.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTA.......................................................................................	18	1	3.00	0.00	0.00	0.00	2.00	1.00
.................................................................................TTAGAATAGGGGAGCTTAACTC...................................................................................	22	1	3.00	0.00	0.00	1.00	0.00	2.00
.................................................................................TTAGAATAGGGGAGATTAACTT...................................................................................	22	1	2.00	0.00	0.00	2.00	0.00	0.00
...................................................................................AGAATAGGGGAGCTTAACTTAT.................................................................................	22	1	2.00	0.00	0.00	2.00	0.00	0.00
.................................................................................TTAGAATAxGGGAGCTTAACT....................................................................................	20	1	2.00	0.00	0.00	1.00	0.00	1.00
...........................................................................................................................GTTAAGAACCTTTATTCTAA...........................................	20	1	2.00	0.00	0.00	0.00	0.00	2.00
..................................................................................TAGAATAGGGGAGCTTAACTTT..................................................................................	22	1	2.00	0.00	0.00	2.00	0.00	0.00
.................................................................................TTACAATAGGGGAGCTTAACTT...................................................................................	22	1	2.00	0.00	0.00	2.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACTTA..................................................................................	23	1	2.00	0.00	0.00	2.00	0.00	0.00
.................................................................................TTAGAATAxGGGAGCTTAACTT...................................................................................	21	1	2.00	0.00	0.00	2.00	0.00	0.00
................................................................................CTTAGAATAGGGGAGCTTAACTT...................................................................................	23	1	2.00	0.00	0.00	2.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACA....................................................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
.................................................................................TTAGAATAGGGGGGCTTAACT....................................................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
.................................................................................TTAGAACAGGGGAGCTTAACT....................................................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
.................................................................................TTAGAATAGGGGACCTTAAC.....................................................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
.................................................................................TTAAAATAGGGGAGCTTAACTT...................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
.................................................................................TTAGAATGGGGGAGCTTAAC.....................................................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
.................................................................................TTAGAATAGGGGTGCTTAACTT...................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
..........................................................T-GAAATCTTGGTCCCACTTGTC.........................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACTTTA.................................................................................	24	1	1.00	0.00	0.00	1.00	0.00	0.00
.................................................................................TTAGAATAGGGTAGCTTAACTT...................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
.................................................................................TTAGAATAGGAGCGCTTAACTT...................................................................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
...........................................................................................................................GTTAAGAACCTTTATTCT.............................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
..................................................................................TTAAATAGGGGAGCTTAACTT...................................................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
.................................................................................TTAGAATCGGGGAGCTTAACT....................................................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................................................TAGAATAGGGGAGCTTAACA....................................................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
.................................................................................TTAGAATAGGGGGGCTTAACTT...................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
.................................................................................TTAGAATAGGCGAGCTTAACTT...................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
.................................................................................ATAGAATAGGGGAGCTTAACT....................................................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
.................................................................................TTAGAATAxGTGAGCTTAACT....................................................................................	20	1	1.00	0.00	0.00	0.00	0.00	1.00
.................................................................................TTAGAATAGGGGACATTAACTT...................................................................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
.................................................................................TTAGAATAGGGGAACTTAACT....................................................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
.................................................................................TTAGAATAGGTGAGCTTAACT....................................................................................	21	1	1.00	0.00	0.00	0.00	0.00	1.00
.................................................................................TTCGAATAGGGGAGCTTAACT....................................................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
...................................................................................AGAATAGGGGAGCTTAACT....................................................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
.................................................................................TTAGAATAGCGGAGCTTAACT....................................................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACC....................................................................................	21	1	1.00	0.00	0.00	0.00	0.00	1.00
.................................................................................TTAGAATAGGGGAGCTTAACTA...................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACTTTT.................................................................................	24	1	1.00	0.00	0.00	1.00	0.00	0.00
....................................................................................GAATAGGGGAGCTTAACTT...................................................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACTTC..................................................................................	23	1	1.00	0.00	0.00	0.00	0.00	1.00
.................................................................................TTAGAATxGGGGAGCTTAACT....................................................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCCTAACT....................................................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
..........................................................................................................................AGTTAAGAACCTTTATTCT.............................................	19	1	1.00	0.00	1.00	0.00	0.00	0.00

droEre2

TCTAGTTGGTT------A----------C-----ATCCTTGCGTTAGTGATCAATCAAT-AACGTTTTGGTCCCACTTGTCTTAGAATAGGGGAGCTTAACTTGTGTG-T-GTTATGCT-TAAGTTAAGAGCCTTTATTCTAAGTCAATTCGACTGC-----------------------------	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.................................................................................TTAGAATAGGGGAGCTTAACT....................................................................................	21	1	202.00	1.00	21.00	3.00	177.00
.................................................................................TTAGAATAGGGGAGCTTAACTT...................................................................................	22	1	197.00	2.00	25.00	3.00	167.00
.................................................................................TTAGAATAGGGGAGCTTAACTTT..................................................................................	23	1	24.00	0.00	3.00	0.00	21.00
.................................................................................TTAGAATAGGGGAGCTTAAC.....................................................................................	20	1	11.00	0.00	0.00	0.00	11.00
...........................................................................................................................GTTAAGAGCCTTTATTCTAAGT.........................................	22	1	6.00	0.00	1.00	0.00	5.00
.................................................................................TTAGAATAGGGGAGCTTAA......................................................................................	19	1	5.00	0.00	1.00	0.00	4.00
.................................................................................TTAGAATATGGGAGCTTAACT....................................................................................	21	1	5.00	0.00	0.00	0.00	5.00
.................................................................................TTAGAATATGGGAGCTTAACTT...................................................................................	22	1	4.00	0.00	0.00	0.00	4.00
............................................................................................................................TTAAGAGCCTTTATTCTAAGT.........................................	21	1	3.00	0.00	0.00	0.00	3.00
.................................................................................TTAGAATAGTGGAGCTTAACTT...................................................................................	22	1	3.00	0.00	0.00	0.00	3.00
.................................................................................TTAGAATAGTGGAGCTTAACT....................................................................................	21	1	3.00	0.00	0.00	0.00	3.00
.................................................................................TTAGAATAGGGGAGCTTAAAT....................................................................................	21	1	2.00	0.00	1.00	0.00	1.00
.................................................................................TTAGAATAGGGGCGCTTAACTT...................................................................................	22	1	2.00	0.00	0.00	0.00	2.00
.................................................................................TTAGAATAGGTGAGCTTAACT....................................................................................	21	1	2.00	0.00	0.00	0.00	2.00
.................................................................................TTAGAATAGGGGAGCTTAACTTTT.................................................................................	24	1	2.00	0.00	0.00	0.00	2.00
.................................................................................TTAGAATAGGGTAGCTTAACT....................................................................................	21	1	2.00	0.00	0.00	0.00	2.00
.................................................................................TTAGAATAGGTGAGCTTAACTTT..................................................................................	23	1	2.00	0.00	0.00	0.00	2.00
.................................................................................TTAGAATGGGGGAGCTTAACTT...................................................................................	22	1	2.00	0.00	2.00	0.00	0.00
.................................................................................TTAGAATACGGGAGCTTAACT....................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
.................................................................................TTAGAATAGGGGAGTTTAACTT...................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
.................................................................................TTACAATAGGGGAGCTTAACT....................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAGCTT...................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.................................................................................TTATAATAGGGGAGCTTAACTT...................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
.................................................................................TTAGACTAGGGGAGCTTAACT....................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
....................................................AATGAAT-AAGGTTTTGGT...................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
...........................................................................................................................GTTAAGAGCCTTTATTCTAA...........................................	20	1	1.00	0.00	0.00	0.00	1.00
.................................................................................TTGGAATAGGGGAGCTTAACT....................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
.................................................................................TTAAAATAGGGGAGCTTAACT....................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
............................................................AACGTTTTGGTCCAACTTGTC.........................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
................................................................................CTTAGAATAGGGGAGCTTAACTT...................................................................................	23	1	1.00	0.00	0.00	0.00	1.00
.................................................................................TTAGAATAGGGGAGCTCAACTT...................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
.................................................................................TTAGAATAGGGTAGCTTAACTTT..................................................................................	23	1	1.00	0.00	0.00	0.00	1.00
.................................................................................TTAGGATAGGGGAGCTTACCTT...................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCATAACT....................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGATTAACTT...................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
.................................................................................TTAGAATAGGGGAGATTAACT....................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
............................................................................................................................TTAAGAGCCTTTATTCTAAG..........................................	20	1	1.00	0.00	0.00	0.00	1.00
.................................................................................TTAGAATAGGGTAGCTTAACTT...................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
.................................................................................TTAGAGTAGGGGAGCTTGACTT...................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.................................................................................TTAGAATGGGGGAGCTTAACT....................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
.................................................................................TTCGAATAGGGGAGCTTAACT....................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
.................................................................................TTAGAATAGGGGAGCTTAAAA....................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACA....................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
.............................................................ACGTTTTGGTCCCACTTGTC.........................................................................................................	20	1	1.00	0.00	0.00	0.00	1.00
.................................................................................TTAGAATAGGGGAGCTTAAATT...................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
.................................................................................TTAGTATAGGGGAGCTTAACTT...................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
.................................................................................TTAGAATAGGGGAGCTTA.......................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
.................................................................................TTAGAATAGGTGAGCTTAACTT...................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
.................................................................................TTATAATAGGGGAGCTTAACTTT..................................................................................	23	1	1.00	0.00	0.00	0.00	1.00
.................................................................................TTAGAATAGGGGAGCTTAACTC...................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
.................................................................................TTAGAATAGGGAAGCTTAACT....................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
..................................................................................TAGAATAGGGGAGCTTAACT....................................................................................	20	1	1.00	0.00	0.00	1.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACCT...................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
.................................................................................TTAGAATAGGGGAGCTTAACTTG..................................................................................	23	1	1.00	0.00	0.00	0.00	1.00
.................................................................................TTAGAATAGGGGAGCTTAACTTA..................................................................................	23	1	1.00	0.00	0.00	0.00	1.00
.................................................................................TTAGAATAGGGGAGCTTAACTTCA.................................................................................	24	1	1.00	0.00	0.00	1.00	0.00
..............................................................CGTTTTGGTCCCACTTGTC.........................................................................................................	19	1	1.00	0.00	0.00	0.00	1.00

droAna3

AAGAATACGAG------T----------------GTTCGCGGGAT---GAGCATCGA------ATCAAAGTCAAACTTGTTTTAGAATAGGGGAGCTTAACTTATTGGAG-AGTTGATATTAAGTTAAGATCCCTAATTCTAAGATAATGTGACCATTAA-TGCAACGTTGTTTTATGCAGTAAAA	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
.................................................................................TTAGAATAGGGGAGCTTAACT....................................................................................	21	1	231.00	202.00	14.00	15.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACTT...................................................................................	22	1	211.00	175.00	14.00	22.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACTTT..................................................................................	23	1	106.00	93.00	6.00	7.00	0.00
..................................................................................TAGAATAGGGGAGCTTAACTT...................................................................................	21	1	91.00	82.00	1.00	8.00	0.00
..................................................................................TAGAATAGGGGAGCTTAACTTA..................................................................................	22	1	69.00	62.00	2.00	5.00	0.00
..................................................................................TAGAATAGGGGAGCTTAACTTT..................................................................................	22	1	65.00	61.00	1.00	3.00	0.00
..................................................................................TAGAATAGGGGAGCTTAACT....................................................................................	20	1	47.00	46.00	0.00	1.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAAC.....................................................................................	20	1	33.00	29.00	2.00	2.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACTTTT.................................................................................	24	1	24.00	19.00	2.00	3.00	0.00
..................................................................................TAGAATAGGGGAGCTTAACTTTT.................................................................................	23	1	15.00	15.00	0.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACTTC..................................................................................	23	1	9.00	7.00	1.00	1.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACTTA..................................................................................	23	1	7.00	5.00	2.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACTTCT.................................................................................	24	1	5.00	5.00	0.00	0.00	0.00
.................................................................................TTAGAATAGGGTAGCTTAACT....................................................................................	21	1	5.00	4.00	1.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAA......................................................................................	19	1	5.00	4.00	0.00	1.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACTTTTT................................................................................	25	1	4.00	4.00	0.00	0.00	0.00
.................................................................................TTAGAATAGGGGATCTTAACT....................................................................................	21	2	2.00	1.50	0.50	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTTT......................................................................................	19	1	4.00	4.00	0.00	0.00	0.00
.................................................................................TTAGAATAGGAGAGCTTAACT....................................................................................	21	1	3.00	2.00	0.00	1.00	0.00
..................................................................................TAGAATAGGGGAGCTTAACTTAT.................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
.................................................................................TTAGAATAGGGGATCTTAACTTT..................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
..................................................................................TAGAATAGGGGAGCTTAACTTTTT................................................................................	24	1	3.00	3.00	0.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACCT...................................................................................	22	1	3.00	3.00	0.00	0.00	0.00
..................................................................................TGGAATAGGGGAGCTTAACTT...................................................................................	21	1	3.00	3.00	0.00	0.00	0.00
..................................................................................TAGAATAGGTGAGCTTAACTT...................................................................................	21	1	3.00	3.00	0.00	0.00	0.00

dp4

GC---------------------------------------------------------------------CAAAACTATCTTAGATCGAAGGTTCCTGGCTTACAGG-G-ATTTGATG-TAAGTTAAGAACCTCCGCTCTAAGCTAGTATGGCTATCATCAACGGCC-----------CTGAAAG	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
........................................................................................................................TAAGTTAAGAACCTCCGCTCT.............................................	21	1	162.00	139.00	0.00	14.00	9.00
........................................................................................................................TAAGTTAAGAACCTCCGCTCTA............................................	22	1	138.00	108.00	1.00	26.00	3.00
...................................................................................AGATCGAAGGTTCCTGGCTTAC.................................................................................	22	1	38.00	34.00	0.00	3.00	1.00
........................................................................................................................TAAGTTAAGAACCTCCGCTCTAA...........................................	23	1	23.00	20.00	0.00	3.00	0.00
........................................................................................................................TAAGTTAAGAACCTCCGCTC..............................................	20	1	17.00	14.00	0.00	3.00	0.00
...................................................................................AGATCGAAGGTTCCTGGCTT...................................................................................	20	1	14.00	12.00	0.00	1.00	1.00
...................................................................................AGATCGAAGGTTCCTGGCTTA..................................................................................	21	1	12.00	12.00	0.00	0.00	0.00
...................................................................................AGATCGAAGGTTCCTGGCTTACA................................................................................	23	1	12.00	12.00	0.00	0.00	0.00
........................................................................................................................TAAGTTAAGAACCTCCGCTCTT............................................	22	1	6.00	5.00	0.00	1.00	0.00
.........................................................................................................................AAGTTAAGAACCTCCGCTCTA............................................	21	1	5.00	4.00	0.00	1.00	0.00
........................................................................................................................TAAGTTAAGAACCTCCGCTCTTT...........................................	23	1	2.00	1.00	0.00	1.00	0.00
........................................................................................................................TAAGTTAAGAACCCCCGCTCTA............................................	22	1	2.00	2.00	0.00	0.00	0.00
........................................................................................................................TAAGTTAAGAACCTCCGCTCTAAT..........................................	24	1	2.00	2.00	0.00	0.00	0.00
.....................................................................................................................TG-TAAGTTAAGAACCTCCGCTCTA............................................	24	1	1.00	1.00	0.00	0.00	0.00
........................................................................................................................TAAGTTAAGAACCTCCGCT...............................................	19	1	1.00	1.00	0.00	0.00	0.00
........................................................................................................................TAAGGTAAGAACCTCCGCCCTA............................................	22	1	1.00	0.00	0.00	1.00	0.00
.....................................................................................ATCGAAGGTTCCTGGCTTAC.................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
........................................................................................................................TAAGTTAAGAGCCTCCGCTCT.............................................	21	1	1.00	1.00	0.00	0.00	0.00
...................................................................................AGATCxAAGGTTCCTGGCTTACA................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
........................................................................................................................TAAGTTAAGAACCTCCGCTCCT............................................	22	1	1.00	1.00	0.00	0.00	0.00
........................................................................................................................TAAGTTAAGAACCTCCGCTCTAATT.........................................	25	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................TAAGTTAAGAACCTCCGCTCTATT..........................................	24	1	1.00	1.00	0.00	0.00	0.00
....................................................................................GATCGAAGGTTCCTGGCTTAC.................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
........................................................................................................................TAAGCTAATAACCTCCGCTCT.............................................	21	1	1.00	0.00	0.00	1.00	0.00
...................................................................................AGATCGAAGGTTCCTGGCTTACAC...............................................................................	24	1	1.00	1.00	0.00	0.00	0.00
........................................................................................................................TAAGTTAAGAACCTCCGCTCTAAG..........................................	24	1	1.00	0.00	0.00	0.00	1.00
.........................................................................................................................AAGTTAAGAACCTCCGCTCTAT...........................................	22	1	1.00	1.00	0.00	0.00	0.00
.........................................................................................................................AAGTTAGGAACCTCCGCTCTA............................................	21	1	1.00	1.00	0.00	0.00	0.00
........................................................................................................................TAAGTTAAGAACCTCCGATCT.............................................	21	1	1.00	1.00	0.00	0.00	0.00
........................................................................................................................TAAGTTAAGAACCTCCGGTCTC............................................	22	1	1.00	0.00	0.00	1.00	0.00
...................................................................................AGGTCGAAGGTTCCTGGCTTA..................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
.....................................................................................ATCGAAGGTTCCTGGCTTA..................................................................................	19	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................TAAGTTAAGAACCTCCGCTCTC............................................	22	1	1.00	0.00	0.00	1.00	0.00

droPer1

GC---------------------------------------------------------------------CAAAATTATCTTAGATCGAAGGTTCCTGGCTTACAGG-G-ATTTGATG-TAAGTTAAGAACCTCCGCTCTAAGCTAGTATGGCTATCATCAACGGCC-----------CTGAAAG	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
........................................................................................................................TAAGTTAAGAACCTCCGCTCT.............................................	21	1	463.00	459.00	0.00	3.00	1.00	0.00
........................................................................................................................TAAGTTAAGAACCTCCGCTCTA............................................	22	1	129.00	125.00	0.00	3.00	1.00	0.00
........................................................................................................................TAAGTTAAGAACCTCCGCTC..............................................	20	1	81.00	80.00	0.00	1.00	0.00	0.00
........................................................................................................................TAAGTTAAGAACCTCCGCTCTAA...........................................	23	1	28.00	28.00	0.00	0.00	0.00	0.00
...................................................................................AGATCGAAGGTTCCTGGCTT...................................................................................	20	1	23.00	22.00	0.00	1.00	0.00	0.00
...................................................................................AGATCGAAGGTTCCTGGCTTAC.................................................................................	22	1	13.00	12.00	0.00	0.00	1.00	0.00
........................................................................................................................TAAGTTAAGAACCTCCGCTCTT............................................	22	1	10.00	9.00	0.00	1.00	0.00	0.00
........................................................................................................................TAAGTTAAGAACCTCCGCTCTAT...........................................	23	1	9.00	9.00	0.00	0.00	0.00	0.00
........................................................................................................................TAAGTTAAGAACCTCCGCTCTTT...........................................	23	1	6.00	6.00	0.00	0.00	0.00	0.00
...................................................................................AGATCGAAGGTTCCTGGCTTA..................................................................................	21	1	6.00	6.00	0.00	0.00	0.00	0.00
...................................................................................AGATCGAAGGTTCCTGGCTTACA................................................................................	23	1	6.00	6.00	0.00	0.00	0.00	0.00
.........................................................................................................................AAGTTAAGAACCTCCGCTCT.............................................	20	1	5.00	5.00	0.00	0.00	0.00	0.00
................................................................................................................................GAACGTCCGCACTAAGCT........................................	18	1	3.00	0.00	1.00	0.00	0.00	2.00
........................................................................................................................TAAGTTAAGAACCTCCGCT...............................................	19	1	3.00	3.00	0.00	0.00	0.00	0.00
........................................................................................................................TAAGTTAAGAAxCTCCGCTCT.............................................	20	1	3.00	3.00	0.00	0.00	0.00	0.00
...................................................................................AGATCGAAGGTTCCTGGCTTT..................................................................................	21	1	3.00	3.00	0.00	0.00	0.00	0.00
........................................................................................................................TAAGTTAGGAACCTCCGCTCTA............................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
........................................................................................................................TAAGTTAGGAACCTCCGCTCT.............................................	21	1	2.00	2.00	0.00	0.00	0.00	0.00
...................................................................................AGATCGAAGGTTCCTGGCT....................................................................................	19	1	2.00	2.00	0.00	0.00	0.00	0.00
........................................................................................................................TAAGTTAAGAACCTCCGCTCTAAAA.........................................	25	1	2.00	0.00	0.00	0.00	0.00	2.00
...................................................................................AGATCGAAGGTCCCTGGCTTA..................................................................................	21	1	2.00	2.00	0.00	0.00	0.00	0.00
........................................................................................................................TAAGTTAAGATCCTCCGCTCTAT...........................................	23	1	2.00	2.00	0.00	0.00	0.00	0.00
.........................................................................................................................AAGTTAAGAACCTCCGCTCTA............................................	21	1	2.00	2.00	0.00	0.00	0.00	0.00
........................................................................................................................CAAGTTAAGAACCTCCGCTCTAA...........................................	23	1	1.00	1.00	0.00	0.00	0.00	0.00
.....................................................................................ATCGAAGGTTCCTGGCTTAC.................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
...................................................................................ATATCGAAGGTTCCTGGCTT...................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................................................TAAGTAAAGAACCTCCGCTCT.............................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
....................................................................................GATCGAAGGTTCCTGGCTTA..................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................................................TAAGTTAGGAACCTCCCCTCT.............................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
......................................................................................................TATTGG-G-ATTTGATG-TAAGT.............................................................	20	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................................................................TAAGTTAAGAACCTCCGATCTAA...........................................	23	1	1.00	1.00	0.00	0.00	0.00	0.00
....................................................................................GATCGAAGGTTCCTGGCTT...................................................................................	19	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................................................TAAGTTAAGAACCTCCACTC..............................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................................................TAAGTTAAGAACCTCCGCTCTAAA..........................................	24	1	1.00	1.00	0.00	0.00	0.00	0.00
.........................................................................................................................AAGTTAAGAACCTCCGCTCTAA...........................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................................................TAAGTTAAGAACCTCAGCTCT.............................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
...................................................................................AGATCGAAGGTTCCGGGCTT...................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
...................................................................................AGATCGAAGGTTCCTGGCTTATT................................................................................	23	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................................................TAAGTTAAGAGCCTCCGCTCTA............................................	22	1	1.00	1.00	0.00	0.00	0.00	0.00
.....................................................................................ATCGAAGGTTCCTGGCTTAT.................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00

droWil1

TTTAAGCCCAACACATTTGTTGTCTGTGTCAGTT--------G------AA--------------CAAGGTCAAACTTGTCTTAGAATAGGGGAGCTTAACTTATATT-G-TTTTGCTT-AAAGTTAAGAGCCTCAATTCTAAGATAATGCGACTATCAC-CGCAGCA-----------GTTCAGA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
............................................................................................................................TTAAGAGCCTCAATTCTAAGAT........................................	22	1	366.00	343.00	14.00	8.00	1.00
.................................................................................TTAGAATAGGGGAGCTTAACTT...................................................................................	22	1	251.00	229.00	12.00	8.00	2.00
.................................................................................TTAGAATAGGGGAGCTTAACT....................................................................................	21	1	221.00	199.00	5.00	14.00	3.00
.........................................................................................................................AAGTTAAGAGCCTCAATTCTAA...........................................	22	1	75.00	51.00	19.00	5.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAAC.....................................................................................	20	1	72.00	70.00	0.00	2.00	0.00
............................................................................................................................TTAAGAGCCTCAATTCTAAGA.........................................	21	1	71.00	70.00	0.00	1.00	0.00
..................................................................................TAGAATAGGGGAGCTTAACTT...................................................................................	21	1	64.00	60.00	3.00	1.00	0.00
..................................................................................TAGAATAGGGGAGCTTAACT....................................................................................	20	1	43.00	38.00	2.00	3.00	0.00
.............................................................................................................................TAAGAGCCTCAATTCTAAGAT........................................	21	1	40.00	36.00	1.00	3.00	0.00
.........................................................................................................................AAGTTAAGAGCCTCAATTCT.............................................	20	1	36.00	26.00	2.00	5.00	3.00
..................................................................................TAGAATAGGGGAGCTTAACTTA..................................................................................	22	1	34.00	26.00	8.00	0.00	0.00
...........................................................................................................................GTTAAGAGCCTCAATTCTAAGA.........................................	22	1	29.00	27.00	1.00	1.00	0.00
..................................................................................TAGAATAGGGGAGCTTAACTTAT.................................................................................	23	1	27.00	24.00	1.00	2.00	0.00
.............................................................................................................................TAAGAGCCTCAATTCTAAGATA.......................................	22	1	25.00	25.00	0.00	0.00	0.00
.........................................................................................................................AAGTTAAGAGCCTCAATTCTA............................................	21	1	20.00	17.00	3.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAAA.....................................................................................	20	1	18.00	18.00	0.00	0.00	0.00
.........................................................................................................................AAGTTAAGAGCCTCAATTCTAAG..........................................	23	1	15.00	13.00	0.00	2.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAA......................................................................................	19	1	14.00	14.00	0.00	0.00	0.00
..........................................................................................................................AGTTAAGAGCCTCAATTCTAAG..........................................	22	1	11.00	9.00	0.00	2.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAAAA....................................................................................	21	1	10.00	9.00	1.00	0.00	0.00
..................................................................................TAGAATAGGGGAGCTTAACTTATA................................................................................	24	1	10.00	10.00	0.00	0.00	0.00
...........................................................................................................................GTTAAGAGCCTCAATTCTAAG..........................................	21	1	10.00	10.00	0.00	0.00	0.00
............................................................................................................................TTAAGAGCCTCAATTCTAAG..........................................	20	1	10.00	10.00	0.00	0.00	0.00
............................................................................................................................TTAAGAGCCTCAATTCTAAGAA........................................	22	1	8.00	8.00	0.00	0.00	0.00
..........................................................................................................................AGTTAAGAGCCTCAATTCTAA...........................................	21	1	8.00	3.00	2.00	3.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACA....................................................................................	21	1	8.00	7.00	1.00	0.00	0.00
.........................................................................................................................AAGTTAAGAGCCTCAATTCTAAA..........................................	23	1	8.00	5.00	3.00	0.00	0.00
..................................................................................TAGAATAGGGGAGCTTAACTTT..................................................................................	22	1	5.00	5.00	0.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACTTT..................................................................................	23	1	5.00	4.00	0.00	1.00	0.00
.................................................................................TTAGAATAGGGGAGCTTATT.....................................................................................	20	1	4.00	3.00	0.00	1.00	0.00
...........................................................................................................................GTTAAGAGCCTCAATTCTAAGAT........................................	23	1	4.00	4.00	0.00	0.00	0.00
............................................................................................................................TTAATAGCCTCAATTCTAAGAT........................................	22	1	3.00	2.00	0.00	1.00	0.00
.............................................................................................................................TAAGAGCCTCAATTCTAAGA.........................................	20	1	3.00	2.00	0.00	1.00	0.00
.............................................................................................................................TAAGAGCCTCAATTCTAAGATC.......................................	22	1	3.00	3.00	0.00	0.00	0.00
..................................................................................TAGAATAGGGGAGCTTAACTTATATT-.............................................................................	26	1	3.00	3.00	0.00	0.00	0.00

droVir3

CAAAAGTT---------T---------TCATATT--------G------AAAATACA--------TTAAGTTTAACTTATCTTAGAATAGGGGAGCTTAACTTTG-T--A-TGAACATT-TAAGCTAAGAGCCTCAATTCTTAGATAATGCGACTAACAA-----ACA-----------AGGAAAA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.................................................................................TTAGAATAGGGGAGCTTAACT....................................................................................	21	1	2661.00	2349.00	11.00	3.00	288.00	10.00
.................................................................................TTAGAATAGGGGAGCTTAACTT...................................................................................	22	1	1418.00	1308.00	13.00	3.00	90.00	4.00
.................................................................................TTAGAATAGGGGAGCTTAACTTC..................................................................................	23	1	688.00	614.00	0.00	0.00	74.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACTC...................................................................................	22	1	375.00	155.00	0.00	0.00	220.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACC....................................................................................	21	1	153.00	132.00	0.00	0.00	21.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAAC.....................................................................................	20	1	106.00	87.00	1.00	0.00	18.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACTTT..................................................................................	23	1	103.00	93.00	0.00	0.00	9.00	1.00
.................................................................................TTAGAATAGGGGAGCTTAA......................................................................................	19	1	27.00	26.00	1.00	0.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACTTCT-................................................................................	24	1	18.00	18.00	0.00	0.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACCT...................................................................................	22	1	14.00	9.00	0.00	0.00	5.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACTTTC-................................................................................	24	1	10.00	9.00	0.00	0.00	1.00	0.00
.................................................................................TTAGAATAxGGGAGCTTAACT....................................................................................	20	1	9.00	3.00	0.00	0.00	6.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACTTCA-................................................................................	24	1	9.00	7.00	0.00	1.00	1.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACTCT..................................................................................	23	1	8.00	6.00	0.00	0.00	2.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACG....................................................................................	21	1	6.00	2.00	0.00	0.00	4.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACA....................................................................................	21	1	6.00	6.00	0.00	0.00	0.00	0.00
.................................................................................TTAGAATAGGTGAGCTTAACT....................................................................................	21	1	6.00	2.00	0.00	0.00	4.00	0.00
................................................................................CTTAGAATAGGGGAGCTTAACT....................................................................................	22	1	6.00	5.00	0.00	0.00	1.00	0.00
..................................................................................TAGAATAGGGGAGCTTAACT....................................................................................	20	1	6.00	4.00	0.00	1.00	1.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACCC...................................................................................	22	1	6.00	4.00	0.00	0.00	2.00	0.00
.................................................................................TTAGAATAGTGGAGCTTAACT....................................................................................	21	1	6.00	2.00	0.00	0.00	4.00	0.00
................................................................................CTTAGAATAGGGGAGCTTAACTT...................................................................................	23	1	5.00	5.00	0.00	0.00	0.00	0.00
.................................................................................TTAGGATAGGGGAGCTTAACT....................................................................................	21	1	5.00	5.00	0.00	0.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTAAACT....................................................................................	21	1	5.00	5.00	0.00	0.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACTTCC-................................................................................	24	1	5.00	5.00	0.00	0.00	0.00	0.00
.................................................................................TTAGAATAxGGGAGCTTAACTT...................................................................................	21	1	4.00	2.00	0.00	0.00	2.00	0.00
.................................................................................TTAGAATAGGGGGGCTTAACT....................................................................................	21	1	4.00	4.00	0.00	0.00	0.00	0.00
..................................................................................TAGAATAGGGGAGCTTAACTT...................................................................................	21	1	4.00	4.00	0.00	0.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACTG...................................................................................	22	1	4.00	4.00	0.00	0.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGATTAACTT...................................................................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
.................................................................................TTAGAGTAGGGGAGCTTAACT....................................................................................	21	1	3.00	2.00	0.00	0.00	1.00	0.00
.................................................................................TTAGAATAGGGGAGCATAACTT...................................................................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
.................................................................................TTAGAATAGTGGAGCTTAACTT...................................................................................	22	1	3.00	1.00	0.00	0.00	2.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACTTTT-................................................................................	24	1	3.00	3.00	0.00	0.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAAA.....................................................................................	20	1	3.00	3.00	0.00	0.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAAATTC..................................................................................	23	1	3.00	2.00	0.00	0.00	1.00	0.00
.................................................................................TTAGAGTAGGGGAGCTTAACTTC..................................................................................	23	1	3.00	1.00	0.00	0.00	2.00	0.00
.................................................................................TTGGAATAGGGGAGCTTAACT....................................................................................	21	1	3.00	3.00	0.00	0.00	0.00	0.00
.................................................................................TTAGAATAGGGGACCTTAACTT...................................................................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
.................................................................................TTAGAATAxGGGAGCTTAACTC...................................................................................	21	1	3.00	0.00	0.00	0.00	3.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAAATT...................................................................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACTTTT-C--.............................................................................	25	1	3.00	3.00	0.00	0.00	0.00	0.00
.................................................................................TTAGAATAGGGGATCTTAACT....................................................................................	21	1	3.00	2.00	0.00	0.00	1.00	0.00
.................................................................................TTAGAATAGGGAAGCTTAACTT...................................................................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
.................................................................................TTAGAATAGGGGGGCTTAACTTC..................................................................................	23	1	3.00	3.00	0.00	0.00	0.00	0.00

droMoj3

TGATGATT---------T---------TCCAATT--------G-T--GATGAAATCA--------TTGAGTTCAACTTATCTTAGAATAGGGGAGCTTAACTTAA--T-C-TGAACACT-CAAGCTAAGAGCCTCGATTCTTCGATAATGCGACTAACA---------------------------	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.................................................................................TTAGAATAGGGGAGCTTAACTT...................................................................................	22	1	1056.00	1008.00	34.00	14.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAAC.....................................................................................	20	1	860.00	851.00	4.00	5.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACT....................................................................................	21	1	568.00	531.00	29.00	8.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACTTC..................................................................................	23	1	377.00	375.00	1.00	1.00	0.00
...........................................................................................................................GCTAAGAGCCTCGATTCTTCG..........................................	21	1	202.00	196.00	4.00	2.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAA......................................................................................	19	1	175.00	171.00	4.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACTTT..................................................................................	23	1	111.00	100.00	8.00	3.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACTC...................................................................................	22	1	104.00	104.00	0.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAT......................................................................................	19	1	27.00	27.00	0.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAAA.....................................................................................	20	1	19.00	18.00	1.00	0.00	0.00
.............................................................................................................................TAAGAGCCTCGATTCTTCGAT........................................	21	1	15.00	12.00	3.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTATT.....................................................................................	20	1	13.00	13.00	0.00	0.00	0.00
............................................................................................................................CTAAGAGCCTCGATTCTTCGAT........................................	22	1	12.00	12.00	0.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTA.......................................................................................	18	1	12.00	7.00	4.00	1.00	0.00
.................................................................................TTAGAATAGGGGAGCTTTT......................................................................................	19	1	11.00	11.00	0.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACA....................................................................................	21	1	10.00	10.00	0.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTATC.....................................................................................	20	1	9.00	8.00	1.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACTCT..................................................................................	23	1	9.00	9.00	0.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACC....................................................................................	21	1	9.00	9.00	0.00	0.00	0.00
.............................................................................................................................TAAGAGCCTCGATTCTTCGATA.......................................	22	1	8.00	8.00	0.00	0.00	0.00
...........................................................................................................................GCTAAGAGCCTCGATTCTTCGA.........................................	22	1	8.00	8.00	0.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAAT.....................................................................................	20	1	7.00	6.00	1.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAATT....................................................................................	21	1	6.00	6.00	0.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACTTA..................................................................................	23	1	6.00	6.00	0.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAAAA....................................................................................	21	1	5.00	5.00	0.00	0.00	0.00
.................................................................................TTAGAATATGGGAGCTTAAC.....................................................................................	20	1	4.00	4.00	0.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTATCTC...................................................................................	22	1	4.00	4.00	0.00	0.00	0.00
.................................................................................TTAGAATAGTGGAGCTTAACTT...................................................................................	22	1	4.00	4.00	0.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACTTTT--...............................................................................	24	1	3.00	3.00	0.00	0.00	0.00
.....ATT---------A---------TCCAATT--------G-T--GTTGAA.....................................................................................................................................	19	1	3.00	3.00	0.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACTA...................................................................................	22	1	3.00	3.00	0.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAAAT....................................................................................	21	1	3.00	3.00	0.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTCT......................................................................................	19	1	3.00	3.00	0.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTAACTTTC--...............................................................................	24	1	3.00	3.00	0.00	0.00	0.00
.............................................................................................................................TAAGAGCCTCGATTCTTCGATT.......................................	22	1	3.00	3.00	0.00	0.00	0.00
.................................................................................TTAGAATAGGGGAGCTTTC......................................................................................	19	1	3.00	3.00	0.00	0.00	0.00

droGri2

TAAAATCA---------T---------TTCAGTT--------GATTAGAAGAGTGCA--------TTATGTCAAACTTATCTTAGAATAGGGGAGCTTAACTTTTATCATATTAGCGCT-CGAGCTAAGATCCTCAATTCTTGGATAAGGCGACTAGCAA---CTGCA-----------GTAAAAA	Size	Hit Count	Total Norm	V109 Male body
.................................................................................TTAGAATAGGGGAGCTTAACT....................................................................................	21	1	96.00	96.00
.................................................................................TTAGAATAGGGGAGCTTAACTT...................................................................................	22	1	68.00	68.00
.................................................................................TTAGAATAGGGGAGCTTAAC.....................................................................................	20	1	12.00	12.00
..................................................................................TAGAATAGGGGAGCTTAACTT...................................................................................	21	1	10.00	10.00
.................................................................................TTAGAATAGGGGAGCTTAACTTT..................................................................................	23	1	5.00	5.00
................................................................................CTTAGAATAGGGGAGCTTAAC.....................................................................................	21	1	3.00	3.00
...............................................................................TCTTAGAATAGGGGAGCTT........................................................................................	19	1	3.00	3.00
.................................................................................TTAGAATAGGGGAGCTTCACT....................................................................................	21	1	2.00	2.00
.................................................................................TTAGAATAGGGGAGCTTAACTTC..................................................................................	23	1	2.00	2.00
.................................................................................TTAGAATAGGGGAGCTTAA......................................................................................	19	1	2.00	2.00
.................................................................................TTAGAATCGGGGAGCTTAACTT...................................................................................	22	1	1.00	1.00
.................................................................................TTAGAATAGGGGAGCTTAACTA...................................................................................	22	1	1.00	1.00
.................................................................................TTAGAATAGGGGAGCTTAACC....................................................................................	21	1	1.00	1.00
.................................................................................TTAGAATAGGGGAGCTTTACT....................................................................................	21	1	1.00	1.00
.................................................................................TTACAATAGGGGAGCTTAACT....................................................................................	21	1	1.00	1.00
.................................................................................TTAGAATAGGGGAGCTTTACTT...................................................................................	22	1	1.00	1.00
.................................................................................TTAGACTAGGGGAGCTTAACTT...................................................................................	22	1	1.00	1.00
....................................................................................GAATAGGGGAGCTTAACT....................................................................................	18	1	1.00	1.00
..................................................................................TAGAATAGGGGAGCTTAACT....................................................................................	20	1	1.00	1.00
...............................................................................TCTTAGAATAGGGGAGCTTT.......................................................................................	20	1	1.00	1.00
.................................................................................TTAGAATAGGGGAGATTAACT....................................................................................	21	1	1.00	1.00
.................................................................................TTAGAATAGGGGAGCTTAACTC...................................................................................	22	1	1.00	1.00
................................................................................CTGAGAATAGGGGAGCTTAACT....................................................................................	22	1	1.00	1.00
.................................................................................TTAGAATAGGGGAGCTTAACA....................................................................................	21	1	1.00	1.00
.................................................................................TTGGAATAGGGGAGCTTTACT....................................................................................	21	1	1.00	1.00
..................................................................................TAGAATAGCGGAGCTTAACTT...................................................................................	21	1	1.00	1.00
.................................................................................TTAGAATCGGGGAGCTTAACT....................................................................................	21	1	1.00	1.00
..................................................................................TAGAATAGGGGAGCTTAACTTT..................................................................................	22	1	1.00	1.00
.................................................................................TTAGAATAGGGGAGCTTACCT....................................................................................	21	1	1.00	1.00
.................................................................................TTAGAATAGGGGAGCTTCC......................................................................................	19	1	1.00	1.00
.................................................................................TTAGAATAGGGGACCTTAACTT...................................................................................	22	1	1.00	1.00
..................................................................................TAGAATAGGGGAGCTTAAC.....................................................................................	19	1	1.00	1.00
...............................................................................TCTTAGAATAGGGGAGCTTAACT....................................................................................	23	1	1.00	1.00
................................................................................CTTAGAATAGGGGAGCTTAACT....................................................................................	22	1	1.00	1.00
.................................................................................TTAGAATAGGGGAGCTTCACTT...................................................................................	22	1	1.00	1.00
................................................................................CTTGGAATAGGGGAGCTTAACT....................................................................................	22	1	1.00	1.00
..................................................................................TAGAATAGGGGAGTTTACCTT...................................................................................	21	1	1.00	1.00
...............................................................................TCTTAGAATAGGGGAGCTTAAC.....................................................................................	22	1	1.00	1.00
.................................................................................TTAGAATATGGGAGCTTAACTT...................................................................................	22	1	1.00	1.00

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image