dme-mir-956- Best orthologs

dme-mir-956	chr3L:11766831-11766978 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 11766840-11766862
   star strand at position 11766945-11766968
   mutations
   read mismatches

Notes: droPer1 ortholog would lie in a region of ambiguous characters (a.k.a. gap) at positions super_29:575364-575722

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Species	Coordinate	Source	Confidence	Alignment
dm3	chr3L:11766816-11766993 -		1	ATGAGC-ACTTTTCCTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCAAGTGCTCG--GCTCA-CTGGCCC-A---------------------AATGCAGTTTGC-CCGGAGACG---------------CC--GGTT-----AACCCAG--------------CACTGAAATGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCAACAATATGCAAA-
droSim1	chr3L:11132280-11132457 -	LASTZ	1	ATGTGC-TCTTTTCCTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCAAGTGCTCG--GCTCA-CTGGCCC-A---------------------AATGCAGTTTGC-CCGGAGACG---------------CC--GGTT-----GCCCAAG--------------CACTGAAATGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCCACAATATGCAAA-
droSec1	super_0:3951754-3951931 -	LASTZ	1	ATGAGC-TCTTTTCCTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCAAGTGCTCG--GCTCA-CTGGCCC-A---------------------AATGCAGTTTGC-CCGGAGACG---------------CC--GGTT-----GCCCAAG--------------CACTGAAATGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCCACAATATGCTAA-
droYak2	chr3L:11795661-11795838 -	LASTZ	1	ATGTGC-ACTTTTCCTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCAAGTGCTCG--GCTCA-CTGGCCC-A---------------------AATGCAGTTTGC-CCGGAGGAG---------------CC--GGTT-----TACCCAG--------------CACTCAAGTGTGTAGTTTCGAGACCACTCTAATCCATTGCACCATTTTCCACTATATGCAAA-
droEre2	scaffold_4784:11744386-11744563 -	LASTZ	1	ATGTGC-ACTTTTCCTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCTAGTGCTCG--GCTCA-CCGGCCC-A---------------------AATGCAGTTTGC-CCGGAGATG---------------CC--GGTT-----TCCTCAG--------------CACTCAAATGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCCACAATATGCAAA-
droEug1	scf7180000409711:3638289-3638466 -	LASTZ	4	ATGTGC-ACTTTTCCTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCCAGTGCTCG--GCTCA-CTGGCCC-A---------------------AATGCAATTTGC-ACTGCGATG---------------CT--GGTT-----AACCAAG--------------TACTGAAAAGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTCTCGCTGTATGCAAA-
droBia1	scf7180000302334:215197-215373 -	LASTZ	4	ATGTGC-ACTTTTCCTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCAAGTGCTCG--GCTCA-CTGGC-C-A---------------------AATGCAATTCGC-ACGGAGACG---------------CT--GGTT-----TCCCAAG--------------CACTGAAAAGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCTGCAATATGCAAA-
droTak1	scf7180000414445:436156-436333 +	LASTZ	4	ATGTGC-ACTTTTCCTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCAAGTGCTCG--GCTCA-CTGGCCC-A---------------------AATGCAATTTGC-ACGGAGACG---------------CT--GGTT-----TCCCAAG--------------CACTGAAAAGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCTGCAATATGCAAA-
droEle1	scf7180000490993:2022454-2022630 +	LASTZ	4	ATGTGC-ACTTTTCCTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCAAGTGCTCG--GCTAA-CTGGCCC-A---------------------AATGCAATATGC-AAGGAGACG---------------CC--GGTT-----ACCCAAG--------------CACT-AAAGGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCCACTATATGCAAA-
droRho1	scf7180000779160:75465-75641 +	LASTZ	4	ATGTGC-AGTTTTCCTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCAAGTGCTCG--GCTCA-CTGGCCC-A---------------------AATGCAATATGC-AAGGAGACA---------------CT--GGTC-----TGCCGAG--------------CAC-GAAAAGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCCACTATATGCAAA-
droFic1	scf7180000454113:2923119-2923283 +	LASTZ	4	ATGTGC-ACTTTTCCTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCAAGTGCCCCG-GCTCA-CTGGCCCAA---------------------AATGCAGTTTGC-AAGGAG------------------------------------AG--------------CACCG-AATGTGTAGTTTCGAGACCACTCTAATCCATTGCATGATCTCTCGGTGTATGCAAA-
droKik1	scf7180000302391:1074065-1074245 +	LASTZ	4	ATGTGC-ACTTTTGCTGATCGCTATCGTGTTTGGAATGGTCTTGGTAGCTAACGGATGAGCAAGTGGTCGGTGCTCA-CTGGTCC-C---------------------AATGCAGTTTGC-GATGAGAGG---------------CC--AGTT-----GCCG--G-----------CACGAATAAAATGTGTAGTTTCGAGACCACTCTAATCCATTGCATTAACTTTCCCTATATGCAAA-
droAna3	scaffold_13337:6020232-6020390 -	LASTZ	1	ATGTGC-ACTTTTCTAGATCGTTATCGCGTTTGGAATGGTCTCGTTAGCTAACGAATGGACTA-----------------------A---------------------AATGCAATTTGC-AATTCGGCG---------------CC--AATT-----ATCCAGG--------------CGCCAAAAAGTTTAGTTTCGAGACCACTCTAATCCATTGCATGATCTTCACTTGTATGCAAA-
droBip1	scf7180000396518:83532-83692 -	LASTZ	4	ATGTGC-ACTTTTCTAGATCGTTATCGCGTTTGGAATGGTCTCGTTAGCTAACGAATGGACTA-----------------------A---------------------AATGCAATTTGC-AATTCGGCG---------------CT--AATT----CTGCCAGG--------------CGCCAAAAAGTTTAGTTTCGAGACCACTCTAATCCATTGCATCATCTTTAGTTTTATGCAAAT
dp4	chrXR_group8:4341287-4341484 +	LASTZ	1	ATGTGC-ACTTCTACTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCAACTGCTTGC-GCGCA-TTGGC-C-A---------------------AATGCATTTCGC-ACCGGGATGGATGTG--GATGTGGCTGGATGTGGTGTCCCCAAG--------------CACAGCCAGGTGTAGTTTCGAGACCACTCTAATCCATTGCACCGCCCACCCATTTATGCAAA-
droPer1	super_29:575343-575363 +	LASTZ	1	ATGTGC-ACTTCTACTGATCGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil1	scaffold_180949:2569086-2569314 +	LASTZ	1	ATGTGC-AATTATACTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAACAAGTGCTTG--GGGCAATTGAGCC-AAAAACAAAACAGAAAAAAGAAAATGCACTTTGCCATCAAAACGAATGTGCGAATATG-CA--ATTT-----GGCCAGGCTCCTCGAACATAACACTAAGAGGTGTAGTTTCGAGACCACTCTAATCCATTGCCACATTTTTCACAATATGCAAA-
droVir3	scaffold_13049:23989392-23989532 -	LASTZ	1	ATGCGCGAAATTTAACGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAACA----------------TTGACCA-A---------------------AGCGCACCTTAC-A-------------------------------------------------------------GCGTAGTGTAGTTTCGAGACCACTCTAATCCATTGCATCGTTTCTGGGCATATGCAAA-
droMoj3	scaffold_6680:18620871-18621011 -	LASTZ	1	ATGTGCGAAATTCAACGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAACA----------------TTAACCA-A---------------------AGCGCACCTTAC--------------------------------------------------------------GGCGTAGTGTAGTTTCGAGACCACTCTAATCCATTGCACCGTTTCTTTCCATATGCAAA-
droGri2	scaffold_15110:9704256-9704382 +	LASTZ	1	ATGTGCGAATCTAAGCGATCGTTATCGCGTTTGGAATGGTCTCGTTAGCTAACCAAAGCGC------TCG----------------------------------------------TT--------------------------------------------------------------ACAGCGTAGTGTAGTTTCGAGACCACTCTAATCCATTCCATCGCTTTTCATTGTATGCAAA-

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species	Alignment
dm3	ATGAGC-ACTTTTCCTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCAAGTGCTCG--GCTCA-CTGGCCC-A---------------------AATGCAGTTTGC-CCGGAGACG---------------CC--GGTT-----AACCCAG--------------CACTGAAATGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCAACAATATGCAAA-
droSim1	ATGTGC-TCTTTTCCTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCAAGTGCTCG--GCTCA-CTGGCCC-A---------------------AATGCAGTTTGC-CCGGAGACG---------------CC--GGTT-----GCCCAAG--------------CACTGAAATGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCCACAATATGCAAA-
droSec1	ATGAGC-TCTTTTCCTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCAAGTGCTCG--GCTCA-CTGGCCC-A---------------------AATGCAGTTTGC-CCGGAGACG---------------CC--GGTT-----GCCCAAG--------------CACTGAAATGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCCACAATATGCTAA-
droYak2	ATGTGC-ACTTTTCCTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCAAGTGCTCG--GCTCA-CTGGCCC-A---------------------AATGCAGTTTGC-CCGGAGGAG---------------CC--GGTT-----TACCCAG--------------CACTCAAGTGTGTAGTTTCGAGACCACTCTAATCCATTGCACCATTTTCCACTATATGCAAA-
droEre2	ATGTGC-ACTTTTCCTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCTAGTGCTCG--GCTCA-CCGGCCC-A---------------------AATGCAGTTTGC-CCGGAGATG---------------CC--GGTT-----TCCTCAG--------------CACTCAAATGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCCACAATATGCAAA-
droEug1	ATGTGC-ACTTTTCCTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCCAGTGCTCG--GCTCA-CTGGCCC-A---------------------AATGCAATTTGC-ACTGCGATG---------------CT--GGTT-----AACCAAG--------------TACTGAAAAGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTCTCGCTGTATGCAAA-
droBia1	ATGTGC-ACTTTTCCTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCAAGTGCTCG--GCTCA-CTGGC-C-A---------------------AATGCAATTCGC-ACGGAGACG---------------CT--GGTT-----TCCCAAG--------------CACTGAAAAGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCTGCAATATGCAAA-
droTak1	ATGTGC-ACTTTTCCTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCAAGTGCTCG--GCTCA-CTGGCCC-A---------------------AATGCAATTTGC-ACGGAGACG---------------CT--GGTT-----TCCCAAG--------------CACTGAAAAGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCTGCAATATGCAAA-
droEle1	ATGTGC-ACTTTTCCTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCAAGTGCTCG--GCTAA-CTGGCCC-A---------------------AATGCAATATGC-AAGGAGACG---------------CC--GGTT-----ACCCAAG--------------CACT-AAAGGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCCACTATATGCAAA-
droRho1	ATGTGC-AGTTTTCCTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCAAGTGCTCG--GCTCA-CTGGCCC-A---------------------AATGCAATATGC-AAGGAGACA---------------CT--GGTC-----TGCCGAG--------------CAC-GAAAAGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCCACTATATGCAAA-
droFic1	ATGTGC-ACTTTTCCTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCAAGTGCCCCG-GCTCA-CTGGCCCAA---------------------AATGCAGTTTGC-AAGGAG------------------------------------AG--------------CACCG-AATGTGTAGTTTCGAGACCACTCTAATCCATTGCATGATCTCTCGGTGTATGCAAA-
droKik1	ATGTGC-ACTTTTGCTGATCGCTATCGTGTTTGGAATGGTCTTGGTAGCTAACGGATGAGCAAGTGGTCGGTGCTCA-CTGGTCC-C---------------------AATGCAGTTTGC-GATGAGAGG---------------CC--AGTT-----GCCG--G-----------CACGAATAAAATGTGTAGTTTCGAGACCACTCTAATCCATTGCATTAACTTTCCCTATATGCAAA-
droAna3	ATGTGC-ACTTTTCTAGATCGTTATCGCGTTTGGAATGGTCTCGTTAGCTAACGAATGGACTA-----------------------A---------------------AATGCAATTTGC-AATTCGGCG---------------CC--AATT-----ATCCAGG--------------CGCCAAAAAGTTTAGTTTCGAGACCACTCTAATCCATTGCATGATCTTCACTTGTATGCAAA-
droBip1	ATGTGC-ACTTTTCTAGATCGTTATCGCGTTTGGAATGGTCTCGTTAGCTAACGAATGGACTA-----------------------A---------------------AATGCAATTTGC-AATTCGGCG---------------CT--AATT----CTGCCAGG--------------CGCCAAAAAGTTTAGTTTCGAGACCACTCTAATCCATTGCATCATCTTTAGTTTTATGCAAAT
dp4	ATGTGC-ACTTCTACTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCAACTGCTTGC-GCGCA-TTGGC-C-A---------------------AATGCATTTCGC-ACCGGGATGGATGTG--GATGTGGCTGGATGTGGTGTCCCCAAG--------------CACAGCCAGGTGTAGTTTCGAGACCACTCTAATCCATTGCACCGCCCACCCATTTATGCAAA-
droPer1	ATGTGC-ACTTCTACTGATCGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil1	ATGTGC-AATTATACTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAACAAGTGCTTG--GGGCAATTGAGCC-AAAAACAAAACAGAAAAAAGAAAATGCACTTTGCCATCAAAACGAATGTGCGAATATG-CA--ATTT-----GGCCAGGCTCCTCGAACATAACACTAAGAGGTGTAGTTTCGAGACCACTCTAATCCATTGCCACATTTTTCACAATATGCAAA-
droVir3	ATGCGCGAAATTTAACGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAACA----------------TTGACCA-A---------------------AGCGCACCTTAC-A-------------------------------------------------------------GCGTAGTGTAGTTTCGAGACCACTCTAATCCATTGCATCGTTTCTGGGCATATGCAAA-
droMoj3	ATGTGCGAAATTCAACGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAACA----------------TTAACCA-A---------------------AGCGCACCTTAC--------------------------------------------------------------GGCGTAGTGTAGTTTCGAGACCACTCTAATCCATTGCACCGTTTCTTTCCATATGCAAA-
droGri2	ATGTGCGAATCTAAGCGATCGTTATCGCGTTTGGAATGGTCTCGTTAGCTAACCAAAGCGC------TCG----------------------------------------------TT--------------------------------------------------------------ACAGCGTAGTGTAGTTTCGAGACCACTCTAATCCATTCCATCGCTTTTCATTGTATGCAAA-

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image																None

Small RNA-seq read pileup

Species

Alignment

droSim1

ATGTGC-TCTTTTCCTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCAAGTGCTCG--GCTCA-CTGGCCC-A---------------------AATGCAGTTTGC-CCGGAGACG---------------CC--GGTT-----GCCCAAG--------------CACTGAAATGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCCACAATATGCAAA-	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATT.........................	23	1	911940.00	158.00	3105.00	858892.00	49785.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCAT..........................	22	1	726864.00	56.00	2569.00	697155.00	27084.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATT.........................	22	1	445252.00	128.00	1452.00	427847.00	15825.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCC............................	20	1	105241.00	0.00	441.00	104146.00	654.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCAT..........................	21	1	75055.00	2.00	241.00	73998.00	814.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCAC..........................	22	1	51592.00	0.00	256.00	49200.00	2136.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCA...........................	21	1	27255.00	6.00	115.00	26685.00	449.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATTT........................	24	1	16069.00	0.00	76.00	15604.00	389.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATTT........................	23	1	8865.00	0.00	34.00	8675.00	156.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATC.........................	23	1	7814.00	0.00	29.00	7341.00	444.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCAG..........................	22	1	7504.00	0.00	15.00	7178.00	311.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATC.............................	19	1	6319.00	0.00	24.00	6259.00	36.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCAA..........................	22	1	5486.00	0.00	23.00	4985.00	478.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCAC..........................	21	1	5330.00	0.00	25.00	5231.00	74.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATC.........................	22	1	3897.00	0.00	33.00	3733.00	131.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCC............................	19	1	3525.00	0.00	20.00	3478.00	27.00
.................................................................................................................................................................................................GTTTCGAGACCACTCTAATCCAT..........................	23	1	2559.00	0.00	7.00	2425.00	127.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCA...........................	20	1	1702.00	0.00	6.00	1678.00	18.00
..................................................................................................................................................................................................TTTCGAGGCCACTCTAATCCATT.........................	23	1	1493.00	0.00	3.00	1402.00	88.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATG.........................	23	1	1425.00	0.00	4.00	1355.00	66.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATA.........................	23	1	1277.00	3.00	5.00	1124.00	145.00
..................................................................................................................................................................................................TTTCGAGGCCACTCTAATCCAT..........................	22	1	1227.00	0.00	3.00	1161.00	63.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATA.........................	22	1	1109.00	0.00	1.00	998.00	110.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAAT..............................	18	1	844.00	0.00	6.00	829.00	9.00
..................................................................................................................................................................................................CTTCGAGACCACTCTAATCCATT.........................	23	1	807.00	1.00	4.00	746.00	56.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCAG..........................	21	1	738.00	0.00	1.00	728.00	9.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATG.........................	22	1	678.00	0.00	1.00	655.00	22.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCG...........................	21	1	660.00	0.00	4.00	647.00	9.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCTT..........................	22	1	646.00	0.00	1.00	598.00	47.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCT...........................	21	1	591.00	0.00	3.00	545.00	43.00
...................................................................................................................................................................................................TTCGAGGCCACTCTAATCCATT.........................	22	1	588.00	0.00	2.00	559.00	27.00
..................................................................................................................................................................................................TTTCGAGACAACTCTAATCCATT.........................	23	1	576.00	1.00	2.00	532.00	41.00
..................................................................................................................................................................................................TTTCGGGACCACTCTAATCCATT.........................	23	1	570.00	0.00	6.00	536.00	28.00
..........................GTGTTTGGAATGGTCTCGTTAGCT................................................................................................................................................................................................	24	1	549.00	1.00	3.00	509.00	36.00
..................................................................................................................................................................................................TTTCGAGACCACCCTAATCCATT.........................	23	1	530.00	0.00	5.00	488.00	37.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAGTCCATT.........................	23	1	488.00	0.00	1.00	465.00	22.00
..................................................................................................................................................................................................CTTCGAGACCACTCTAATCCAT..........................	22	1	484.00	0.00	6.00	458.00	20.00
..................................................................................................................................................................................................TTTCGAGACCGCTCTAATCCATT.........................	23	1	462.00	1.00	0.00	437.00	24.00
..................................................................................................................................................................................................TTTCGGGACCACTCTAATCCAT..........................	22	1	450.00	0.00	3.00	429.00	18.00
..................................................................................................................................................................................................TTTCGAGACCACCCTAATCCAT..........................	22	1	448.00	0.00	0.00	431.00	17.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCACT.........................	23	1	447.00	0.00	1.00	426.00	20.00
..................................................................................................................................................................................................TTTCGAGACCGCTCTAATCCAT..........................	22	1	411.00	1.00	0.00	388.00	22.00
.................................................................................................................................................................................................GTTTCGAGACCACTCTAATCCATT.........................	24	1	409.00	0.00	0.00	374.00	35.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATC.............................	18	1	394.00	0.00	3.00	384.00	7.00
.................................................................................................................................................................................................CTTTCGAGACCACTCTAATCCATT.........................	24	1	394.00	0.00	1.00	377.00	16.00
.................................................................................................................................................................................................GTTTCGAGACCACTCTAATCC............................	21	1	392.00	0.00	2.00	387.00	3.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATTA........................	24	1	392.00	0.00	0.00	364.00	28.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAGTCCAT..........................	22	1	383.00	0.00	0.00	366.00	17.00
..................................................................................................................................................................................................TTTCGAGACAACTCTAATCCAT..........................	22	1	379.00	0.00	1.00	358.00	20.00
..................................................................................................................................................................................................TTTCAAGACCACTCTAATCCATT.........................	23	1	376.00	1.00	2.00	360.00	13.00
...................................................................................................................................................................................................TTCGGGACCACTCTAATCCATT.........................	22	1	364.00	1.00	4.00	345.00	14.00
...................................................................................................................................................................................................TTCGAGACAACTCTAATCCATT.........................	22	1	341.00	0.00	1.00	320.00	20.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATTA........................	23	1	334.00	1.00	0.00	309.00	24.00
..................................................................................................................................................................................................TTTCAAGACCACTCTAATCCAT..........................	22	1	319.00	0.00	3.00	305.00	11.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCGT..........................	22	1	314.00	0.00	0.00	305.00	9.00
...................................................................................................................................................................................................TTCGAGACCACCCTAATCCATT.........................	22	1	307.00	0.00	0.00	296.00	11.00
.................................................................................................................................................................................................CTTTCGAGACCACTCTAATCCAT..........................	23	1	285.00	0.00	4.00	275.00	6.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAACCCATT.........................	23	1	284.00	0.00	2.00	268.00	14.00
..........................GTGTTTGGAATGGTCTCGTTAGC.................................................................................................................................................................................................	23	1	281.00	3.00	1.00	255.00	22.00
..................................................................................................................................................................................................TTTTGAGACCACTCTAATCCATT.........................	23	1	281.00	0.00	1.00	266.00	14.00
...................................................................................................................................................................................................CTCGAGACCACTCTAATCCATT.........................	22	1	279.00	0.00	1.00	257.00	21.00
..................................................................................................................................................................................................TTTCGAGACTACTCTAATCCATT.........................	23	1	274.00	0.00	1.00	254.00	19.00
....................................................................................................................................................................................................TCGAGACCACTCTAATCCATT.........................	21	1	267.00	0.00	3.00	255.00	9.00
..................................................................................................................................................................................................TTTCTAGACCACTCTAATCCATT.........................	23	1	267.00	0.00	1.00	255.00	11.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCCTT.........................	23	1	259.00	2.00	1.00	248.00	8.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCGTT.........................	23	1	258.00	0.00	2.00	248.00	8.00
............................GTTTGGAATGGTCTCGTTAGCT................................................................................................................................................................................................	22	1	251.00	0.00	1.00	248.00	2.00
..................................................................................................................................................................................................TTTCGAGAACACTCTAATCCATT.........................	23	1	233.00	2.00	0.00	223.00	8.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCACT.........................	22	1	232.00	0.00	1.00	220.00	11.00
..................................................................................................................................................................................................TTTCTAGACCACTCTAATCCAT..........................	22	1	222.00	0.00	1.00	215.00	6.00
..................................................................................................................................................................................................TTTCGAGATCACTCTAATCCATT.........................	23	1	221.00	1.00	0.00	211.00	9.00
...................................................................................................................................................................................................TTCGAGACCGCTCTAATCCATT.........................	22	1	220.00	0.00	0.00	207.00	13.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCAAA.........................	23	1	220.00	0.00	0.00	181.00	39.00
...................................................................................................................................................................................................TTCAAGACCACTCTAATCCATT.........................	22	1	214.00	0.00	0.00	206.00	8.00
..................................................................................................................................................................................................TTTCGAGACCACTCCAATCCATT.........................	23	1	207.00	0.00	0.00	196.00	11.00
..................................................................................................................................................................................................TTTTGAGACCACTCTAATCCAT..........................	22	1	206.00	0.00	1.00	195.00	10.00
..................................................................................................................................................................................................TTTCGAGACTACTCTAATCCAT..........................	22	1	205.00	0.00	2.00	199.00	4.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAACCCAT..........................	22	1	192.00	0.00	0.00	185.00	7.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATTCATT.........................	23	1	191.00	0.00	0.00	181.00	10.00
..................................................................................................................................................................................................TTTCGAAACCACTCTAATCCATT.........................	23	1	190.00	0.00	2.00	176.00	12.00
...................................................................................................................................................................................................TTCGAGACTACTCTAATCCATT.........................	22	1	189.00	0.00	0.00	180.00	9.00
..................................................................................................................................................................................................TTTCGAGATCACTCTAATCCAT..........................	22	1	186.00	0.00	0.00	177.00	9.00
...........................TGTTTGGAATGGTCTCGTTAGCT................................................................................................................................................................................................	23	1	180.00	0.00	0.00	178.00	2.00
.................................................................................................................................................................................................GTTTCGAGACCACTCTAATCCAC..........................	23	1	179.00	0.00	1.00	166.00	12.00
..................................................................................................................................................................................................TTTCGAGACCAATCTAATCCATT.........................	23	1	178.00	0.00	1.00	172.00	5.00
...................................................................................................................................................................................................TTCGAGACCACTCTAGTCCATT.........................	22	1	177.00	0.00	0.00	169.00	8.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCCT..........................	22	1	175.00	0.00	0.00	169.00	6.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATTTT.......................	24	1	171.00	0.00	0.00	167.00	4.00
..................................................................................................................................................................................................TTTCGAGACCACTCCAATCCAT..........................	22	1	169.00	0.00	0.00	165.00	4.00
..................................................................................................................................................................................................TTTCGAGAACACTCTAATCCAT..........................	22	1	169.00	0.00	0.00	160.00	9.00
..................................................................................................................................................................................................TTTCGAAACCACTCTAATCCAT..........................	22	1	166.00	0.00	0.00	158.00	8.00
..................................................................................................................................................................................................TCTCGAGACCACTCTAATCCATT.........................	23	1	165.00	0.00	0.00	154.00	11.00
..................................................................................................................................................................................................TTCCGAGACCACTCTAATCCATT.........................	23	1	159.00	0.00	2.00	146.00	11.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATTCAT..........................	22	1	158.00	0.00	0.00	153.00	5.00
..................................................................................................................................................................................................TTTCGAGGCCACTCTAATCC............................	20	1	158.00	0.00	0.00	157.00	1.00
..................................................................................................................................................................................................TTTCGAGACGACTCTAATCCATT.........................	23	1	156.00	0.00	1.00	148.00	7.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCTATT.........................	23	1	155.00	1.00	0.00	148.00	6.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCTAT..........................	22	1	153.00	0.00	1.00	149.00	3.00
..................................................................................................................................................................................................TTTCGAGACCACTTTAATCCATT.........................	23	1	153.00	0.00	0.00	144.00	9.00
..................................................................................................................................................................................................TTTCGAGACCACTCTGATCCATT.........................	23	1	148.00	0.00	3.00	133.00	12.00

droSec1

ATGAGC-TCTTTTCCTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCAAGTGCTCG--GCTCA-CTGGCCC-A---------------------AATGCAGTTTGC-CCGGAGACG---------------CC--GGTT-----GCCCAAG--------------CACTGAAATGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCCACAATATGCTAA-	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATT.........................	23	1	13863.00	9804.00	2191.00	1868.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATT.........................	22	1	7701.00	5436.00	1097.00	1168.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCAT..........................	22	1	6391.00	4865.00	689.00	837.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCA...........................	21	1	1587.00	1317.00	41.00	229.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCAT..........................	21	1	751.00	630.00	20.00	101.00
..........................GTGTTTGGAATGGTCTCGTTAGCT................................................................................................................................................................................................	24	1	237.00	233.00	2.00	2.00
..........................GTGTTTGGAATGGTCTCGTTAGC.................................................................................................................................................................................................	23	1	197.00	193.00	4.00	0.00
..........................GTGTTTGGAATGGTCTCGTTAG..................................................................................................................................................................................................	22	1	180.00	171.00	4.00	5.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCC............................	20	1	126.00	79.00	5.00	42.00
..........................GTGTTTGGAATGGTCTCGTT....................................................................................................................................................................................................	20	1	119.00	113.00	0.00	6.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATTT........................	24	1	109.00	90.00	3.00	16.00
............................GTTTGGAATGGTCTCGTTAGCT................................................................................................................................................................................................	22	1	104.00	97.00	3.00	4.00
...........................TGTTTGGAATGGTCTCGTTAGCT................................................................................................................................................................................................	23	1	84.00	77.00	2.00	5.00
...........................TGTTTGGAATGGTCTCGTTAGC.................................................................................................................................................................................................	22	1	84.00	79.00	4.00	1.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATACATT.........................	23	1	80.00	79.00	0.00	1.00
..........................GTGTTTGGAATGGTCTCGTTA...................................................................................................................................................................................................	21	1	77.00	72.00	0.00	5.00
............................GTTTGGAATGGTCTCGTTAGC.................................................................................................................................................................................................	21	1	68.00	63.00	2.00	3.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATTCATT.........................	23	1	67.00	61.00	4.00	2.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATTT........................	23	1	62.00	50.00	1.00	11.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCAATT.........................	22	1	51.00	46.00	0.00	5.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCA...........................	20	1	47.00	31.00	0.00	16.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATA.........................	23	1	46.00	27.00	13.00	6.00
....................................................................................................................................................................................................TCGAGACCACTCTAATCCATT.........................	21	1	35.00	27.00	4.00	4.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATGCATT.........................	23	1	35.00	34.00	0.00	1.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATA.........................	22	1	33.00	17.00	7.00	9.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCTATT.........................	22	1	33.00	32.00	0.00	1.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATACAT..........................	22	1	33.00	30.00	0.00	3.00
..................................................................................................................................................................................................CTTCGAGACCACTCTAATCCATT.........................	23	1	30.00	12.00	13.00	5.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATC.............................	19	1	29.00	3.00	3.00	23.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATTCAT..........................	22	1	25.00	24.00	1.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCAA..........................	22	1	24.00	14.00	5.00	5.00
..........................GTGTTTGGAATGGTCTCGTTT...................................................................................................................................................................................................	21	1	22.00	21.00	0.00	1.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATC.........................	23	1	20.00	16.00	3.00	1.00
...........................TGTTTGGAATGGTCTCGTTAG..................................................................................................................................................................................................	21	1	19.00	18.00	0.00	1.00
..................................................................................................................................................................................................CTTCGAGACCACTCTAATCCAT..........................	22	1	19.00	9.00	4.00	6.00
..................................................................................................................................................................................................TTTCGAGACCCCTCTAATCCATT.........................	23	1	17.00	14.00	0.00	3.00
..................................................................................................................................................................................................TTTCGAGACCACACTAATCCATT.........................	23	1	17.00	6.00	11.00	0.00
..................................................................................................................................................................................................TTTCGAGACCATTCTAATCCATT.........................	23	1	17.00	4.00	13.00	0.00
.............................TTTGGAATGGTCTCGTTAGCT................................................................................................................................................................................................	21	1	16.00	15.00	1.00	0.00
............................GTTTGGAATGGTCTCGTTAGCTA...............................................................................................................................................................................................	23	1	16.00	16.00	0.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACCCTAATCCAT..........................	22	1	16.00	10.00	4.00	2.00
..................................................................................................................................................................................................TTTCGAGGCCACTCTAATCCATT.........................	23	1	15.00	9.00	4.00	2.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCCTT.........................	23	1	15.00	14.00	0.00	1.00
..................................................................................................................................................................................................TTTCGAGACCACTCTxATCCATT.........................	22	1	15.00	9.00	5.00	1.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATTA........................	23	1	14.00	8.00	4.00	2.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCGATT.........................	22	1	14.00	14.00	0.00	0.00
...................................................................................................................................................................................................TTCGAGACCACCCTAATCCATT.........................	22	1	13.00	10.00	2.00	1.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATTA........................	24	1	13.00	7.00	1.00	5.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATGCAT..........................	22	1	13.00	13.00	0.00	0.00
..................................................................................................................................................................................................TTCCGAGACCACTCTAATCCATT.........................	23	1	13.00	7.00	2.00	4.00
..................................................................................................................................................................................................TCTCGAGACCACTCTAATCCATT.........................	23	1	13.00	7.00	3.00	3.00
..................................................................................................................................................................................................TTTCGAGACCCCTCTAATCCAT..........................	22	1	12.00	10.00	0.00	2.00
..................................................................................................................................................................................................TTTCGAGACCACTCCAATCCATT.........................	23	1	12.00	8.00	2.00	2.00
..................................................................................................................................................................................................TTTCGAGCCCACTCTAATCCATT.........................	23	1	12.00	8.00	3.00	1.00
..................................................................................................................................................................................................TTTCGGGACCACTCTAATCCATT.........................	23	1	11.00	7.00	4.00	0.00
..................................................................................................................................................................................................TTTTGAGACCACTCTAATCCATT.........................	23	1	11.00	5.00	6.00	0.00
...................................................................................................................................................................................................TTCGAGGCCACTCTAATCCATT.........................	22	1	11.00	6.00	2.00	3.00
....................................................................................................................................................................................................TCGAGACCACTCTAATCCAT..........................	20	1	11.00	10.00	0.00	1.00
..................................................................................................................................................................................................TTTCGACACCACTCTAATCCATT.........................	23	1	11.00	10.00	0.00	1.00
..................................................................................................................................................................................................TTTCGAGACCACCCTAATCCATT.........................	23	1	11.00	10.00	1.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACTCTCATCCATT.........................	23	1	10.00	9.00	0.00	1.00
...................................................................................................................................................................................................TTCGACACCACTCTAATCCATT.........................	22	1	10.00	8.00	2.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAACCCATT.........................	23	1	10.00	6.00	1.00	3.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCGTT.........................	23	1	9.00	4.00	4.00	1.00
..................................................................................................................................................................................................TTTCGAGACCACACTAATCCAT..........................	22	1	9.00	4.00	4.00	1.00
...................................................................................................................................................................................................TTTGAGACCACTCTAATCCATT.........................	22	1	9.00	6.00	3.00	0.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATC.........................	22	1	9.00	4.00	4.00	1.00
..................................................................................................................................................................................................TTTCGAAACCACTCTAATCCATT.........................	23	1	9.00	3.00	0.00	6.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATACA...........................	21	1	9.00	8.00	0.00	1.00
..................................................................................................................................................................................................TTTCGAGACAACTCTAATCCATT.........................	23	1	9.00	3.00	3.00	3.00
..................................................................................................................................................................................................TTTCGAGACTACTCTAATCCATT.........................	23	1	9.00	3.00	3.00	3.00
..................................................................................................................................................................................................TTTCGAGGCCACTCTAATCCAT..........................	22	1	9.00	7.00	1.00	1.00
...................................................................................................................................................................................................TTCGGGACCACTCTAATCCATT.........................	22	1	9.00	5.00	1.00	3.00
..................................................................................................................................................................................................TTTCGAGACCACTTTAATCCATT.........................	23	1	9.00	2.00	5.00	2.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCACT.........................	23	1	9.00	7.00	1.00	1.00
..................................................................................................................................................................................................TTTCGAGACCGCTCTAATCCATT.........................	23	1	8.00	6.00	2.00	0.00
...................................................................................................................................................................................................TTCTAGACCACTCTAATCCATT.........................	22	1	8.00	3.00	1.00	4.00
..................................................................................................................................................................................................TCTCGAGACCACTCTAATCCAT..........................	22	1	8.00	5.00	2.00	1.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAGTCCATT.........................	23	1	8.00	6.00	2.00	0.00
...................................................................................................................................................................................................TTCGAGAACACTCTAATCCATT.........................	22	1	8.00	2.00	1.00	5.00
...................................................................................................................................................................................................TTCGAGACCATTCTAATCCATT.........................	22	1	8.00	3.00	5.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACTCTxATCCAT..........................	21	1	8.00	4.00	4.00	0.00
..................................................................................................................................................................................................TTTCTAGACCACTCTAATCCAT..........................	22	1	8.00	2.00	1.00	5.00
...................................................................................................................................................................................................CTCGAGACCACTCTAATCCATT.........................	22	1	8.00	4.00	3.00	1.00
...................................................................................................................................................................................................TTCAAGACCACTCTAATCCATT.........................	22	1	8.00	6.00	0.00	2.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATGCA...........................	21	1	8.00	8.00	0.00	0.00
..................................................................................................................................................................................................TTTCTAGACCACTCTAATCCATT.........................	23	1	8.00	3.00	1.00	4.00
.................................................................................................................................................................................................CTTTCGAGACCACTCTAATCCATT.........................	24	1	8.00	5.00	1.00	2.00
..................................................................................................................................................................................................TTTCAAGACCACTCTAATCCATT.........................	23	1	7.00	2.00	3.00	2.00
...................................................................................................................................................................................................TTCGAGACCACTCTCATCCATT.........................	22	1	7.00	5.00	2.00	0.00
..........................GTGTTTGGAATGGTCTCGTTAGCTA...............................................................................................................................................................................................	25	1	7.00	7.00	0.00	0.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCCTT.........................	22	1	7.00	7.00	0.00	0.00
..................................................................................................................................................................................................TTTAGAGACCACTCTAATCCATT.........................	23	1	7.00	2.00	1.00	4.00
.............................TTTGGAATGGTCTCGTTAGC.................................................................................................................................................................................................	20	1	7.00	6.00	0.00	1.00
...................................................................................................................................................................................................TTCGAGACCACACTAATCCATT.........................	22	1	7.00	1.00	4.00	2.00
..................................................................................................................................................................................................TTTCGAGACCACTCTACTCCAT..........................	22	1	7.00	5.00	0.00	2.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCTATT.........................	23	1	7.00	6.00	0.00	1.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAACCCAT..........................	22	1	7.00	5.00	0.00	2.00
.....................................................................................................................................................................................................CGAGACCACTCTAATCCATT.........................	20	1	6.00	4.00	0.00	2.00
..................................................................................................................................................................................................TTTCGTGACCACTCTAATCCATT.........................	23	1	6.00	3.00	1.00	2.00
..................................................................................................................................................................................................TTTCGAGACAACTCTAATCCAT..........................	22	1	6.00	4.00	1.00	1.00

droYak2

ATGTGC-ACTTTTCCTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCAAGTGCTCG--GCTCA-CTGGCCC-A---------------------AATGCAGTTTGC-CCGGAGGAG---------------CC--GGTT-----TACCCAG--------------CACTCAAGTGTGTAGTTTCGAGACCACTCTAATCCATTGCACCATTTTCCACTATATGCAAA-	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATT.........................	23	1	92329.00	201.00	109.00	5294.00	298.00	86427.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCAT..........................	22	1	50018.00	42.00	51.00	2785.00	129.00	47011.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATT.........................	22	1	38890.00	134.00	79.00	3723.00	200.00	34754.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCC............................	20	1	7193.00	0.00	7.00	40.00	14.00	7132.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCAT..........................	21	1	6034.00	3.00	8.00	575.00	26.00	5422.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCAC..........................	22	1	5318.00	0.00	0.00	2.00	1.00	5315.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATTT........................	24	1	3306.00	2.00	0.00	104.00	10.00	3190.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCA...........................	21	1	2369.00	4.00	13.00	361.00	33.00	1958.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATTT........................	23	1	1496.00	1.00	2.00	76.00	3.00	1414.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATC.........................	23	1	1130.00	1.00	0.00	5.00	1.00	1123.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCAC..........................	21	1	663.00	0.00	0.00	0.00	0.00	663.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCC............................	19	1	585.00	0.00	0.00	1.00	0.00	584.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATC.............................	19	1	491.00	0.00	7.00	2.00	7.00	475.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATC.........................	22	1	434.00	0.00	0.00	4.00	0.00	430.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCAA..........................	22	1	368.00	1.00	0.00	9.00	1.00	357.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCAG..........................	22	1	367.00	0.00	0.00	4.00	0.00	363.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCTT..........................	22	1	309.00	2.00	0.00	2.00	1.00	304.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCCTT.........................	23	1	198.00	1.00	2.00	2.00	5.00	188.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCA...........................	20	1	149.00	0.00	2.00	21.00	1.00	125.00
..................................................................................................................................................................................................TTTCGAGGCCACTCTAATCCATT.........................	23	1	139.00	1.00	0.00	4.00	1.00	133.00
..................................................................................................................................................................................................TTTCGAGACAACTCTAATCCATT.........................	23	1	129.00	0.00	0.00	1.00	0.00	128.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCCT..........................	22	1	125.00	0.00	2.00	2.00	1.00	120.00
....................................................................................................................................................................................................TCGAGACCACTCTAATCCATT.........................	21	1	106.00	1.00	0.00	40.00	1.00	64.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCT...........................	21	1	106.00	0.00	0.00	2.00	0.00	104.00
.................................................................................................................................................................................................GTTTCGAGACCACTCTAATCCAT..........................	23	1	101.00	0.00	0.00	0.00	0.00	101.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATC.............................	18	1	100.00	0.00	0.00	1.00	1.00	98.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCCTT.........................	22	1	95.00	3.00	0.00	1.00	5.00	86.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAAT..............................	18	1	94.00	0.00	0.00	0.00	0.00	94.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATA.........................	23	1	91.00	1.00	2.00	9.00	2.00	77.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATG.........................	23	1	89.00	0.00	0.00	0.00	1.00	88.00
..........................GTGTTTGGAATGGTCTCGTTAGCT................................................................................................................................................................................................	24	1	85.00	0.00	0.00	45.00	0.00	40.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATTA........................	24	1	80.00	0.00	0.00	16.00	0.00	64.00
..................................................................................................................................................................................................TTTCGAGGCCACTCTAATCCAT..........................	22	1	77.00	1.00	0.00	1.00	0.00	75.00
..................................................................................................................................................................................................CTTCGAGACCACTCTAATCCATT.........................	23	1	69.00	0.00	0.00	12.00	0.00	57.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATA.........................	22	1	67.00	4.00	1.00	13.00	0.00	49.00
...................................................................................................................................................................................................TTCGAGGCCACTCTAATCCATT.........................	22	1	60.00	0.00	0.00	6.00	3.00	51.00
..................................................................................................................................................................................................TTTCGAGACCACCCTAATCCATT.........................	23	1	57.00	1.00	0.00	2.00	0.00	54.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCTTT.........................	23	1	50.00	0.00	0.00	3.00	0.00	47.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATTA........................	23	1	50.00	1.00	0.00	8.00	2.00	39.00
...................................................................................................................................................................................................TTCGAGACAACTCTAATCCATT.........................	22	1	49.00	0.00	0.00	1.00	0.00	48.00
..................................................................................................................................................................................................TTTCGGGACCACTCTAATCCATT.........................	23	1	49.00	0.00	0.00	0.00	2.00	47.00
..................................................................................................................................................................................................TTTCAAGACCACTCTAATCCATT.........................	23	1	49.00	0.00	1.00	2.00	0.00	46.00
..................................................AACGGATGAGCAAGTGCTCG--GCTC......................................................................................................................................................................	24	1	49.00	0.00	0.00	14.00	0.00	35.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATTTT.......................	24	1	49.00	0.00	0.00	1.00	0.00	48.00
.................................................................................................................................................................................................CTTTCGAGACCACTCTAATCCATT.........................	24	1	49.00	1.00	0.00	3.00	0.00	45.00
....................................................................................................................................................................................................TCGAGACCACTCTAATCCAT..........................	20	1	46.00	0.00	0.00	18.00	0.00	28.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCG...........................	21	1	45.00	0.00	0.00	0.00	0.00	45.00
..................................................................................................................................................................................................TTTCGAGAACACTCTAATCCATT.........................	23	1	45.00	0.00	0.00	1.00	0.00	44.00
..................................................................................................................................................................................................TTTCGAGACAACTCTAATCCAT..........................	22	1	45.00	0.00	0.00	1.00	0.00	44.00
............................GTTTGGAATGGTCTCGTTAGCT................................................................................................................................................................................................	22	1	44.00	1.00	0.00	36.00	2.00	5.00
..................................................................................................................................................................................................TTTCGAGACCAATCTAATCCATT.........................	23	1	44.00	2.00	0.00	1.00	0.00	41.00
.............................................................................................................ATGCAGTTTGC-CCGGAGGAG---------------CC--.............................................................................................	22	1	42.00	0.00	0.00	41.00	0.00	1.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATTTT.......................	25	1	42.00	0.00	0.00	2.00	0.00	40.00
..................................................................................................................................................................................................TTTCGAGACCGCTCTAATCCATT.........................	23	1	41.00	0.00	0.00	0.00	1.00	40.00
..................................................................................................................................................................................................TTTCGAGACCACTCTACTCCATT.........................	23	1	41.00	0.00	3.00	2.00	3.00	33.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCACT.........................	23	1	41.00	0.00	0.00	3.00	0.00	38.00
............................................................................................................AATGCAGTTTGC-CCGGAGGAG---------------CC--.............................................................................................	23	1	39.00	0.00	0.00	36.00	0.00	3.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATG.........................	22	1	39.00	0.00	0.00	1.00	0.00	38.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAGTCCATT.........................	23	1	38.00	1.00	0.00	3.00	0.00	34.00
..........................GTGTTTGGAATGGTCTCGTTAGC.................................................................................................................................................................................................	23	1	34.00	0.00	0.00	18.00	0.00	16.00
..................................................................................................................................................................................................TTTCGAGAACACTCTAATCCAT..........................	22	1	34.00	0.00	0.00	3.00	0.00	31.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCAG..........................	21	1	33.00	0.00	0.00	0.00	0.00	33.00
..................................................................................................................................................................................................CTTCGAGACCACTCTAATCCAT..........................	22	1	33.00	0.00	0.00	6.00	0.00	27.00
..................................................................................................................................................................................................TTTCGAGACTACTCTAATCCATT.........................	23	1	32.00	0.00	0.00	1.00	0.00	31.00
............................GTTTGGAATGGTCTCGTTAGC.................................................................................................................................................................................................	21	1	32.00	0.00	0.00	30.00	0.00	2.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCCC..........................	22	1	31.00	0.00	0.00	0.00	0.00	31.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATTAA.......................	25	1	30.00	0.00	0.00	1.00	0.00	29.00
..................................................................................................................................................................................................TTTCGAGACCACTCTACTCCAT..........................	22	1	30.00	0.00	0.00	2.00	3.00	25.00
...................................................................................................................................................................................................TTCGAGCCCACTCTAATCCATT.........................	22	1	30.00	0.00	0.00	6.00	0.00	24.00
..................................................................................................................................................................................................TTTCGAGATCACTCTAATCCATT.........................	23	1	28.00	0.00	0.00	2.00	0.00	26.00
..................................................................................................................................................................................................TTTCGGGACCACTCTAATCCAT..........................	22	1	28.00	1.00	0.00	1.00	1.00	25.00
...................................................................................................................................................................................................TTCGGGACCACTCTAATCCATT.........................	22	1	28.00	0.00	0.00	3.00	2.00	23.00
..................................................................................................................................................................................................TTTTGAGACCACTCTAATCCATT.........................	23	1	27.00	0.00	0.00	1.00	0.00	26.00
..................................................................................................................................................................................................TTTCGAGACCGCTCTAATCCAT..........................	22	1	27.00	0.00	0.00	2.00	0.00	25.00
............................................................................................................AATGCAGTTTGC-CCGGAGGAG---------------C................................................................................................	22	1	26.00	0.00	1.00	25.00	0.00	0.00
.................................................................................................................................................................................................CTTTCGAGACCACTCTAATCCAT..........................	23	1	26.00	0.00	0.00	1.00	0.00	25.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATTCATT.........................	23	1	26.00	2.00	1.00	5.00	0.00	18.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCGTT.........................	23	1	25.00	0.00	1.00	6.00	1.00	17.00
...................................................................................................................................................................................................TTCGAGACCGCTCTAATCCATT.........................	22	1	25.00	0.00	0.00	4.00	1.00	20.00
....................................................................................................................................................................................................TCGAGACCACTCTAATCC............................	18	1	25.00	0.00	0.00	0.00	0.00	25.00
..................................................................................................................................................................................................TTTCGAGACCACTCCAATCCATT.........................	23	1	24.00	0.00	0.00	2.00	0.00	22.00
.............................................................................................................ATGCAGTTTGC-CCGGAGGAG---------------C................................................................................................	21	1	23.00	0.00	0.00	22.00	1.00	0.00
...................................................................................................................................................................................................CTCGAGACCACTCTAATCCATT.........................	22	1	22.00	0.00	0.00	4.00	0.00	18.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCCT..........................	21	1	22.00	0.00	0.00	0.00	0.00	22.00
..........................GTGTTTGGAATGGTCTCGTTAG..................................................................................................................................................................................................	22	1	22.00	0.00	0.00	21.00	1.00	0.00
..................................................................................................................................................................................................TTTCGAGACCAATCTAATCCAT..........................	22	1	22.00	0.00	0.00	1.00	0.00	21.00
..................................................................................................................................................................................................TTTCAAGACCACTCTAATCCAT..........................	22	1	22.00	0.00	1.00	3.00	0.00	18.00
..................................................................................................................................................................................................TTTCTAGACCACTCTAATCCATT.........................	23	1	22.00	0.00	0.00	2.00	1.00	19.00
...................................................................................................................................................................................................TTCGAGACGACTCTAATCCATT.........................	22	1	22.00	1.00	0.00	0.00	0.00	21.00
..................................................................................................................................................................................................TTTCTAGACCACTCTAATCCAT..........................	22	1	21.00	0.00	0.00	1.00	0.00	20.00
.................................................................................................................................................................................................GTTTCGAGACCACTCTAATCC............................	21	1	21.00	0.00	0.00	0.00	0.00	21.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAACCCATT.........................	23	1	21.00	0.00	0.00	0.00	0.00	21.00
..................................................................................................................................................................................................TTTCGAAACCACTCTAATCCATT.........................	23	1	21.00	0.00	0.00	0.00	1.00	20.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCAAA.........................	23	1	21.00	0.00	0.00	0.00	0.00	21.00
...................................................................................................................................................................................................TTCGAGACCACTCTGATCCATT.........................	22	1	21.00	1.00	0.00	3.00	4.00	13.00
.....................................................................................................................................................................................................CGAGACCACTCTAATCCATT.........................	20	1	20.00	0.00	1.00	5.00	0.00	14.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATTC........................	24	1	20.00	0.00	0.00	0.00	1.00	19.00
..................................................................................................................................................................................................TTTCGAGACCACCCTAATCCAT..........................	22	1	20.00	0.00	0.00	4.00	1.00	15.00
..................................................................................................................................................................................................TTTCGAGACCACTCTGATCCATT.........................	23	1	19.00	1.00	0.00	2.00	0.00	16.00
..................................................................................................................................................................................................TTTCGAGACCACTCTCATCCATT.........................	23	1	19.00	1.00	1.00	0.00	16.00	1.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCCTTT........................	24	1	19.00	0.00	0.00	0.00	0.00	19.00

droEre2

ATGTGC-ACTTTTCCTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCTAGTGCTCG--GCTCA-CCGGCCC-A---------------------AATGCAGTTTGC-CCGGAGATG---------------CC--GGTT-----TCCTCAG--------------CACTCAAATGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCCACAATATGCAAA-	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATT.........................	23	1	4235.00	110.00	413.00	0.00	3712.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATT.........................	22	1	2627.00	56.00	233.00	0.00	2338.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCAT..........................	22	1	1383.00	7.00	142.00	0.00	1234.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCA...........................	21	1	243.00	3.00	25.00	0.00	215.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCAT..........................	21	1	186.00	3.00	16.00	0.00	167.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCC............................	20	1	70.00	0.00	14.00	0.00	56.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATC.........................	23	1	52.00	0.00	0.00	0.00	52.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATC.............................	19	1	51.00	1.00	3.00	0.00	47.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATA.........................	23	1	49.00	0.00	2.00	0.00	47.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATTT........................	24	1	40.00	1.00	6.00	0.00	33.00
..................................................................................................................................................................................................TTTCGATACCACTCTAATCCATT.........................	23	1	39.00	1.00	0.00	0.00	38.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCAATT.........................	23	1	37.00	0.00	0.00	0.00	37.00
..................................................................................................................................................................................................TTTCTAGACCACTCTAATCCATT.........................	23	1	35.00	1.00	0.00	0.00	34.00
..................................................................................................................................................................................................TTTCGAGACAACTCTAATCCATT.........................	23	1	32.00	0.00	1.00	0.00	31.00
..................................................................................................................................................................................................TTTCGAGACCACTATAATCCATT.........................	23	1	30.00	0.00	2.00	0.00	28.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCAATT.........................	22	1	29.00	0.00	0.00	0.00	29.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATTT........................	23	1	28.00	0.00	4.00	0.00	24.00
..................................................................................................................................................................................................TTTAGAGACCACTCTAATCCATT.........................	23	1	28.00	1.00	0.00	0.00	27.00
...................................................................................................................................................................................................TTCGAGACCACTATAATCCATT.........................	22	1	25.00	1.00	0.00	0.00	24.00
...................................................................................................................................................................................................TTCGAGACAACTCTAATCCATT.........................	22	1	24.00	0.00	0.00	0.00	24.00
...................................................................................................................................................................................................TTCTAGACCACTCTAATCCATT.........................	22	1	23.00	0.00	0.00	0.00	23.00
...................................................................................................................................................................................................TTCGATACCACTCTAATCCATT.........................	22	1	23.00	1.00	0.00	0.00	22.00
....................................................................................................................................................................................................TCGAGACCACTCTAATCCATT.........................	21	1	20.00	1.00	0.00	0.00	19.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATG.........................	23	1	20.00	1.00	1.00	0.00	18.00
..................................................................................................................................................................................................CTTCGAGACCACTCTAATCCATT.........................	23	1	16.00	1.00	0.00	0.00	15.00
...................................................................................................................................................................................................TTAGAGACCACTCTAATCCATT.........................	22	1	15.00	1.00	1.00	0.00	13.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATACATT.........................	23	1	15.00	0.00	0.00	0.00	15.00
..................................................................................................................................................................................................TTTCGATACCACTCTAATCCAT..........................	22	1	14.00	1.00	0.00	0.00	13.00
..................................................................................................................................................................................................TTTCGAGAACACTCTAATCCATT.........................	23	1	14.00	1.00	1.00	0.00	12.00
..................................................................................................................................................................................................TTCCGAGACCACTCTAATCCATT.........................	23	1	12.00	1.00	0.00	0.00	11.00
..........................GTGTTTGGAATGGTCTCGTTAGC.................................................................................................................................................................................................	23	1	12.00	0.00	1.00	0.00	11.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCA...........................	20	1	12.00	0.00	1.00	0.00	11.00
..................................................................................................................................................................................................TTTCGAGACCACTATAATCCAT..........................	22	1	11.00	0.00	0.00	0.00	11.00
............................GTTTGGAATGGTCTCGTTAGC.................................................................................................................................................................................................	21	1	11.00	0.00	1.00	0.00	10.00
............................GTTTGGAATGGTCTCGTTAGCT................................................................................................................................................................................................	22	1	10.00	1.00	0.00	0.00	9.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATACATT.........................	22	1	9.00	0.00	0.00	0.00	9.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATA.........................	22	1	9.00	0.00	1.00	0.00	8.00
..................................................................................................................................................................................................TTTCGAGGCCACTCTAATCCATT.........................	23	1	8.00	2.00	2.00	0.00	4.00
..................................................................................................................................................................................................TTTCGAGACCACTCTCATCCATT.........................	23	1	8.00	1.00	5.00	0.00	2.00
..................................................................................................................................................................................................TTTCGAGACCACTCTACTCCATT.........................	23	1	8.00	1.00	4.00	0.00	3.00
....................................................................................................................................................................................................TCGAGACCACTCTAATCCAT..........................	20	1	8.00	0.00	2.00	0.00	6.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCAAT..........................	22	1	8.00	0.00	0.00	0.00	8.00
..........................GTGTTTGGAATGGTCTCGTTAGCT................................................................................................................................................................................................	24	1	8.00	0.00	0.00	0.00	8.00
..................................................................................................................................................................................................TTTCAAGACCACTCTAATCCATT.........................	23	1	7.00	0.00	1.00	0.00	6.00
..................................................................................................................................................................................................TTTCGAGACCCCTCTAATCCATT.........................	23	1	7.00	0.00	0.00	0.00	7.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCAA..........................	22	1	7.00	0.00	1.00	0.00	6.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATTA........................	24	1	7.00	1.00	0.00	0.00	6.00
...................................................................................................................................................................................................TTCGAGAACACTCTAATCCATT.........................	22	1	7.00	0.00	0.00	0.00	7.00
..................................................................................................................................................................................................TTTCTAGACCACTCTAATCCAT..........................	22	1	7.00	1.00	0.00	0.00	6.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATTA........................	23	1	7.00	0.00	0.00	0.00	7.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAAT..............................	18	1	6.00	0.00	0.00	0.00	6.00
......................................................................................................................................................................................................GAGACCACTCTAATCCATT.........................	19	1	6.00	0.00	1.00	0.00	5.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCCTT.........................	23	1	6.00	2.00	1.00	0.00	3.00
..................................................................................................................................................................................................TTTCGCGACCACTCTAATCCATT.........................	23	1	6.00	0.00	0.00	0.00	6.00
............................................................................................................AATGCAGTTTGC-CCGGAGATG---------------CC--.............................................................................................	23	1	6.00	0.00	2.00	0.00	4.00
..................................................................................................................................................................................................TTTCGAGACCAATCTAATCCATT.........................	23	1	6.00	0.00	0.00	0.00	6.00
...................................................................................................................................................................................................TTCAAGACCACTCTAATCCATT.........................	22	1	6.00	0.00	1.00	0.00	5.00
..................................................................................................................................................................................................TCTCGAGACCACTCTAATCCATT.........................	23	1	6.00	0.00	0.00	0.00	6.00
..................................................................................................................................................................................................TTTCGAGACCACCCTAATCCATT.........................	23	1	6.00	0.00	0.00	0.00	6.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCACT.........................	23	1	6.00	2.00	0.00	0.00	4.00
.....................................................................................................................................................................................................CGAGACCACTCTAATCCATT.........................	20	1	5.00	0.00	0.00	0.00	5.00
...................................................................................................................................................................................................TTCGAGACCACTCTCATCCATT.........................	22	1	5.00	1.00	4.00	0.00	0.00
..................................................................................................................................................................................................TTTCGAGACAACTCTAATCCAT..........................	22	1	5.00	0.00	0.00	0.00	5.00
...................................................................................................................................................................................................TTCGAGACCAATCTAATCCATT.........................	22	1	5.00	0.00	0.00	0.00	5.00
...................................................................................................................................................................................................TTCGAGACTACTCTAATCCATT.........................	22	1	5.00	0.00	1.00	0.00	4.00
...................................................................................................................................................................................................TTCGAGACCACTCTAACCCATT.........................	22	1	5.00	0.00	1.00	0.00	4.00
..................................................................................................................................................................................................TTTAGAGACCACTCTAATCCAT..........................	22	1	5.00	0.00	0.00	0.00	5.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCC............................	19	1	5.00	0.00	0.00	0.00	5.00
..................................................................................................................................................................................................TTTCGAGACCACTCTACTCCAT..........................	22	1	5.00	0.00	3.00	0.00	2.00
..................................................................................................................................................................................................TTTCGAGACTACTCTAATCCATT.........................	23	1	5.00	0.00	1.00	0.00	4.00
..........................................................AGCTAGTGCTCG--GCTCA-CC..................................................................................................................................................................	19	1	5.00	0.00	0.00	0.00	5.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAACCCATT.........................	23	1	5.00	0.00	0.00	0.00	5.00
..................................................................................................................................................................................................TTTCGAGACCGCTCTAATCCATT.........................	23	1	4.00	0.00	1.00	0.00	3.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCGTT.........................	23	1	4.00	0.00	1.00	0.00	3.00
...........................TGTTTGGAATGGTCTCGTTAGCT................................................................................................................................................................................................	23	1	4.00	0.00	1.00	0.00	3.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAGTCCATT.........................	23	1	4.00	0.00	1.00	0.00	3.00
...................................................................................................................................................................................................TTCCAGACCACTCTAATCCATT.........................	22	1	4.00	0.00	1.00	0.00	3.00
..................................................................................................................................................................................................TTTGGAGACCACTCTAATCCATT.........................	23	1	4.00	0.00	0.00	0.00	4.00
...................................................................................................................................................................................................TTCGAGACCGCTCTAATCCATT.........................	22	1	4.00	0.00	0.00	0.00	4.00
.............................................................................................................ATGCAGTTTGC-CCGGAGATG---------------CC--.............................................................................................	22	1	4.00	0.00	1.00	0.00	3.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCTATT.........................	22	1	4.00	1.00	1.00	0.00	2.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCCTT.........................	22	1	4.00	1.00	2.00	0.00	1.00
..................................................................................................................................................................................................TTTCGAGACCATTCTAATCCATT.........................	23	1	4.00	0.00	0.00	0.00	4.00
..................................................................................................................................................................................................TTTCGGGACCACTCTAATCCATT.........................	23	1	4.00	0.00	0.00	0.00	4.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATACAT..........................	22	1	4.00	0.00	0.00	0.00	4.00
...................................................................................................................................................................................................TTCGAGCCCACTCTAATCCATT.........................	22	1	4.00	0.00	1.00	0.00	3.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCACT.........................	22	1	4.00	0.00	1.00	0.00	3.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCGTT.........................	22	1	4.00	0.00	3.00	0.00	1.00
...................................................................................................................................................................................................TTCGGGACCACTCTAATCCATT.........................	22	1	4.00	0.00	1.00	0.00	3.00
..................................................................................................................................................................................................TTTCGAGACCACTCTxATCCATT.........................	22	1	4.00	0.00	0.00	0.00	4.00
......................................................................................A---------------------AATGCAGTTTGC-CCGGA....................................................................................................................	18	1	3.00	0.00	0.00	0.00	3.00
..............................TTGGAATGGTCTCGTTAGCT................................................................................................................................................................................................	20	1	3.00	0.00	0.00	0.00	3.00
...........................TGTTTGGAATGGTCTCGTTAGC.................................................................................................................................................................................................	22	1	3.00	0.00	1.00	0.00	2.00
..........................GTGTTTGGAATGGTCTCGTTAG..................................................................................................................................................................................................	22	1	3.00	0.00	0.00	0.00	3.00
...................................................................................................................................................................................................TTCGATACCACTCTAATCCAT..........................	21	1	3.00	0.00	0.00	0.00	3.00
..................................................................................................................................................................................................TTTCGAGACCACACTAATCCATT.........................	23	1	3.00	0.00	2.00	0.00	1.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCCT..........................	22	1	3.00	0.00	0.00	0.00	3.00
.............................................................................................................ATGCAGTTTGC-CCGGAGATG---------------CC--GGTT-----T...................................................................................	27	1	3.00	0.00	0.00	0.00	3.00
.................................................TAACGGATGAGCTAGTGCTCG--GCT.......................................................................................................................................................................	24	1	3.00	0.00	1.00	0.00	2.00
...................................................................................................................................................................................................TTCGAGACCATTCTAATCCATT.........................	22	1	3.00	0.00	0.00	0.00	3.00
.............................................................................................................ATGCAGTTTGC-CCGGAGATG---------------CC--GGT..........................................................................................	25	1	3.00	0.00	0.00	0.00	3.00

droEug1

ATGTGC-ACTTTTCCTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCCAGTGCTCG--GCTCA-CTGGCCC-A---------------------AATGCAATTTGC-ACTGCGATG---------------CT--GGTT-----AACCAAG--------------TACTGAAAAGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTCTCGCTGTATGCAAA-

Size

Hit Count

Total Norm

droBia1

ATGTGC-ACTTTTCCTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCAAGTGCTCG--GCTCA-CTGGC-C-A---------------------AATGCAATTCGC-ACGGAGACG---------------CT--GGTT-----TCCCAAG--------------CACTGAAAAGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCTGCAATATGCAAA-

Size

Hit Count

Total Norm

droTak1

ATGTGC-ACTTTTCCTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCAAGTGCTCG--GCTCA-CTGGCCC-A---------------------AATGCAATTTGC-ACGGAGACG---------------CT--GGTT-----TCCCAAG--------------CACTGAAAAGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCTGCAATATGCAAA-

Size

Hit Count

Total Norm

droEle1

ATGTGC-ACTTTTCCTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCAAGTGCTCG--GCTAA-CTGGCCC-A---------------------AATGCAATATGC-AAGGAGACG---------------CC--GGTT-----ACCCAAG--------------CACT-AAAGGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCCACTATATGCAAA-

Size

Hit Count

Total Norm

droRho1

ATGTGC-AGTTTTCCTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCAAGTGCTCG--GCTCA-CTGGCCC-A---------------------AATGCAATATGC-AAGGAGACA---------------CT--GGTC-----TGCCGAG--------------CAC-GAAAAGTGTAGTTTCGAGACCACTCTAATCCATTGCAGCATTTTCCACTATATGCAAA-

Size

Hit Count

Total Norm

droFic1

ATGTGC-ACTTTTCCTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCAAGTGCCCCG-GCTCA-CTGGCCCAA---------------------AATGCAGTTTGC-AAGGAG------------------------------------AG--------------CACCG-AATGTGTAGTTTCGAGACCACTCTAATCCATTGCATGATCTCTCGGTGTATGCAAA-

Size

Hit Count

Total Norm

droKik1

ATGTGC-ACTTTTGCTGATCGCTATCGTGTTTGGAATGGTCTTGGTAGCTAACGGATGAGCAAGTGGTCGGTGCTCA-CTGGTCC-C---------------------AATGCAGTTTGC-GATGAGAGG---------------CC--AGTT-----GCCG--G-----------CACGAATAAAATGTGTAGTTTCGAGACCACTCTAATCCATTGCATTAACTTTCCCTATATGCAAA-

Size

Hit Count

Total Norm

droAna3

ATGTGC-ACTTTTCTAGATCGTTATCGCGTTTGGAATGGTCTCGTTAGCTAACGAATGGACTA-----------------------A---------------------AATGCAATTTGC-AATTCGGCG---------------CC--AATT-----ATCCAGG--------------CGCCAAAAAGTTTAGTTTCGAGACCACTCTAATCCATTGCATGATCTTCACTTGTATGCAAA-	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATT.........................	23	1	3212.00	2427.00	192.00	576.00	17.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATT.........................	22	1	2916.00	2095.00	311.00	481.00	29.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCAT..........................	22	1	1323.00	1012.00	65.00	232.00	14.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCA...........................	21	1	904.00	745.00	17.00	135.00	7.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCAT..........................	21	1	197.00	149.00	24.00	22.00	2.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCC............................	20	1	169.00	111.00	10.00	42.00	6.00
..........................GCGTTTGGAATGGTCTCGTTAGC.................................................................................................................................................................................................	23	1	130.00	102.00	26.00	2.00	0.00
..........................GCGTTTGGAATGGTCTCGTTAG..................................................................................................................................................................................................	22	1	81.00	74.00	7.00	0.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATTT........................	24	1	69.00	50.00	3.00	16.00	0.00
............................GTTTGGAATGGTCTCGTTAGCT................................................................................................................................................................................................	22	1	55.00	41.00	13.00	0.00	1.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATTT........................	23	1	54.00	35.00	7.00	12.00	0.00
............................GTTTGGAATGGTCTCGTTAGC.................................................................................................................................................................................................	21	1	49.00	41.00	8.00	0.00	0.00
..........................GCGTTTGGAATGGTCTCGTTAGCT................................................................................................................................................................................................	24	1	43.00	38.00	5.00	0.00	0.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCA...........................	20	1	38.00	22.00	8.00	8.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATC.............................	19	1	33.00	3.00	7.00	20.00	3.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCGTT.........................	23	1	28.00	26.00	1.00	1.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATA.........................	23	1	24.00	18.00	1.00	5.00	0.00
............................GTTTGGAATGGTCTCGTTAGCTA...............................................................................................................................................................................................	23	1	22.00	19.00	3.00	0.00	0.00
..........................GCGTTTGGAATGGTCTCGTT....................................................................................................................................................................................................	20	1	21.00	21.00	0.00	0.00	0.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCAGT.........................	22	1	20.00	18.00	0.00	2.00	0.00
...................................................................................................................................................................................................TTCGAGACCACTATAATCCATT.........................	22	1	19.00	17.00	0.00	2.00	0.00
....................................................................................................................................................................................................TCGAGACCACTCTAATCCATT.........................	21	1	17.00	15.00	0.00	2.00	0.00
.................................................................................................................................................................................................GTTTCGAGACCACTCTAATCCA...........................	22	1	17.00	16.00	1.00	0.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCCTT.........................	23	1	17.00	13.00	1.00	3.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCT...........................	21	1	16.00	12.00	2.00	2.00	0.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCACT.........................	22	1	15.00	15.00	0.00	0.00	0.00
.............................TTTGGAATGGTCTCGTTAGCTAA..............................................................................................................................................................................................	23	1	14.00	9.00	4.00	0.00	1.00
.............................TTTGGAATGGTCTCGTTAGCT................................................................................................................................................................................................	21	1	13.00	12.00	1.00	0.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCTTT.........................	23	1	13.00	11.00	0.00	2.00	0.00
.............................TTTGGAATGGTCTCGTTAGCTA...............................................................................................................................................................................................	22	1	13.00	6.00	6.00	0.00	1.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATA.........................	22	1	13.00	7.00	1.00	4.00	1.00
..................................................................................................................................................................................................TTTAGAGACCACTCTAATCCATT.........................	23	1	13.00	7.00	1.00	5.00	0.00
...................................................................................................................................................................................................TTCGAGACCACTCTACTCCATT.........................	22	1	13.00	10.00	0.00	3.00	0.00
...................................................................................................................................................................................................TTCGAGACCACACTAATCCATT.........................	22	1	12.00	12.00	0.00	0.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACTCTCATCCATT.........................	23	1	12.00	8.00	0.00	4.00	0.00
...................................................................................................................................................................................................TACGAGACCACTCTAATCCATT.........................	22	1	12.00	6.00	0.00	6.00	0.00
..................................................................................................................................................................................................TTTCGAGACCGCTCTAATCCATT.........................	23	1	11.00	10.00	0.00	1.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCAA..........................	22	1	11.00	9.00	0.00	1.00	1.00
..................................................................................................................................................................................................TTTCGAGACCACTATAATCCATT.........................	23	1	11.00	4.00	4.00	3.00	0.00
..................................................................................................................................................................................................TTTCGAGACCAATCTAATCCATT.........................	23	1	11.00	9.00	0.00	2.00	0.00
..................................................................................................................................................................................................TTTCGAGACCAGTCTAATCCATT.........................	23	1	11.00	11.00	0.00	0.00	0.00
...................................................................................................................................................................................................TTCGATACCACTCTAATCCATT.........................	22	1	10.00	6.00	2.00	2.00	0.00
..................................................................................................................................................................................................TTTCGAGACCATTCTAATCCAT..........................	22	1	10.00	10.00	0.00	0.00	0.00
............................GTTTGGAATGGTCTCGTTAG..................................................................................................................................................................................................	20	1	10.00	8.00	1.00	0.00	1.00
..................................................................................................................................................................................................TTTCGAGACCACACTAATCCATT.........................	23	1	9.00	9.00	0.00	0.00	0.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCAAT.........................	22	1	9.00	9.00	0.00	0.00	0.00
..................................................................................................................................................................................................TCTCGAGACCACTCTAATCCATT.........................	23	1	8.00	6.00	0.00	2.00	0.00
............................GTTTGGAATGGTCTCGTTAGCTAA..............................................................................................................................................................................................	24	1	8.00	7.00	1.00	0.00	0.00
.............................TTTGGAATGGTCTCGTTAGC.................................................................................................................................................................................................	20	1	8.00	8.00	0.00	0.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCGT..........................	22	1	8.00	7.00	0.00	1.00	0.00
...................................................................................................................................................................................................TTCGAGACCACTCTCATCCATT.........................	22	1	8.00	1.00	0.00	6.00	1.00
...................................................................................................................................................................................................TTCTAGACCACTCTAATCCATT.........................	22	1	7.00	6.00	1.00	0.00	0.00
..................................................................................................................................................................................................TTTCGGGACCACTCTAATCCATT.........................	23	1	7.00	4.00	0.00	3.00	0.00
...................................................................................................................................................................................................TTCGAGGCCACTCTAATCCATT.........................	22	1	7.00	5.00	0.00	2.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCG...........................	21	1	7.00	7.00	0.00	0.00	0.00
..................................................................................................................................................................................................TTTCGAGATCACTCTAATCCATT.........................	23	1	7.00	3.00	0.00	4.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACTATAATCCAT..........................	22	1	7.00	6.00	1.00	0.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCAATT.........................	23	1	6.00	4.00	1.00	1.00	0.00
..................................................................................................................................................................................................TTTCGAGACCCCTCTAATCCAT..........................	22	1	6.00	5.00	1.00	0.00	0.00
...................................................................................................................................................................................................TTCGAGACCACTCGAATCCATT.........................	22	1	6.00	5.00	0.00	1.00	0.00
..................................................................................................................................................................................................TTTCTAGACCACTCTAATCCATT.........................	23	1	6.00	5.00	1.00	0.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATACATT.........................	23	1	6.00	4.00	1.00	1.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACTCTACTCCATT.........................	23	1	6.00	0.00	0.00	6.00	0.00
...................................................................................................................................................................................................TTAGAGACCACTCTAATCCATT.........................	22	1	6.00	1.00	1.00	4.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACGCTAATCCATT.........................	23	1	6.00	4.00	0.00	2.00	0.00
..................................................................................................................................................................................................TATCGAGACCACTCTAATCCATT.........................	23	1	6.00	5.00	1.00	0.00	0.00
...................................................................................................................................................................................................TTCGAGACCACTCTAGTCCATT.........................	22	1	6.00	5.00	0.00	1.00	0.00
..................................................................................................................................................................................................CTTCGAGACCACTCTAATCCATT.........................	23	1	6.00	4.00	1.00	1.00	0.00
...................................................................................................................................................................................................TTCGAGACCACGCTAATCCATT.........................	22	1	6.00	5.00	0.00	1.00	0.00
...................................................................................................................................................................................................TTCGAGAACACTCTAATCCATT.........................	22	1	6.00	2.00	2.00	2.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCACT.........................	23	1	6.00	3.00	1.00	2.00	0.00
..................................................................................................................................................................................................TTTCGATACCACTCTAATCCATT.........................	23	1	6.00	4.00	1.00	1.00	0.00
...................................................................................................................................................................................................TTCGAGACCACTGTAATCCATT.........................	22	1	6.00	5.00	1.00	0.00	0.00
..........................GCGTTTGGAATGGTCTCGTTA...................................................................................................................................................................................................	21	1	6.00	6.00	0.00	0.00	0.00
...................................................................................................................................................................................................GTCGAGACCACTCTAATCCATT.........................	22	1	6.00	4.00	0.00	2.00	0.00
............................GTTTGGAATGGTCTCGTTAGCTAAA.............................................................................................................................................................................................	25	1	6.00	4.00	2.00	0.00	0.00
..................................................................................................................................................................................................TTTCGAGACCATTCTAATCCATT.........................	23	1	5.00	4.00	0.00	1.00	0.00
..................................................................................................................................................................................................TTTCGAGAACACTCTAATCCATT.........................	23	1	5.00	2.00	0.00	3.00	0.00
...................................................................................................................................................................................................TGCGAGACCACTCTAATCCATT.........................	22	1	5.00	2.00	0.00	3.00	0.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATC.........................	22	1	5.00	4.00	0.00	1.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACTATAATCCA...........................	21	1	5.00	5.00	0.00	0.00	0.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATACATT.........................	22	1	5.00	4.00	1.00	0.00	0.00
..................................................................................................................................................................................................TTTCGAGGCCACTCTAATCCATT.........................	23	1	5.00	3.00	0.00	2.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCCT..........................	22	1	5.00	4.00	0.00	0.00	1.00
..................................................................................................................................................................................................GTTCGAGACCACTCTAATCCA...........................	21	1	5.00	5.00	0.00	0.00	0.00
...................................................................................................................................................................................................TTTGAGACCACTCTAATCCATT.........................	22	1	5.00	3.00	0.00	2.00	0.00
...................................................................................................................................................................................................TTCGAGACCACTCAAATCCATT.........................	22	1	5.00	5.00	0.00	0.00	0.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCTTT.........................	22	1	5.00	1.00	0.00	4.00	0.00
...................................................................................................................................................................................................TTCGAGACTACTCTAATCCATT.........................	22	1	5.00	4.00	0.00	1.00	0.00
...................................................................................................................................................................................................TCCGAGACCACTCTAATCCATT.........................	22	1	4.00	3.00	0.00	1.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATTA........................	24	1	4.00	0.00	1.00	1.00	2.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATACAT..........................	22	1	4.00	2.00	0.00	2.00	0.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATTA........................	23	1	4.00	2.00	0.00	1.00	1.00
..........................GCGTTTGGAATGGTCTCGTTAGCTAA..............................................................................................................................................................................................	26	1	4.00	2.00	2.00	0.00	0.00
..................................................................................................................................................................................................TTTCGAGAGCACTCTAATCCATT.........................	23	1	4.00	3.00	0.00	1.00	0.00
..................................................................................................................................................................................................TGTCGAGACCACTCTAATCCATT.........................	23	1	4.00	1.00	0.00	3.00	0.00
..................................................................................................................................................................................................TTTCGAGACCAATCTAATCCAT..........................	22	1	4.00	3.00	1.00	0.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACACTAATCCAT..........................	22	1	4.00	4.00	0.00	0.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACTCTTATCCATT.........................	23	1	4.00	2.00	1.00	1.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAACCCATT.........................	23	1	4.00	1.00	0.00	3.00	0.00
..................................................................................................................................................................................................TTTCGAGACAACTCTAATCCATT.........................	23	1	4.00	2.00	0.00	2.00	0.00

droBip1

ATGTGC-ACTTTTCTAGATCGTTATCGCGTTTGGAATGGTCTCGTTAGCTAACGAATGGACTA-----------------------A---------------------AATGCAATTTGC-AATTCGGCG---------------CT--AATT----CTGCCAGG--------------CGCCAAAAAGTTTAGTTTCGAGACCACTCTAATCCATTGCATCATCTTTAGTTTTATGCAAAT

Size

Hit Count

Total Norm

dp4

ATGTGC-ACTTCTACTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAGCAACTGCTTGC-GCGCA-TTGGC-C-A---------------------AATGCATTTCGC-ACCGGGATGGATGTG--GATGTGGCTGGATGTGGTGTCCCCAAG--------------CACAGCCAGGTGTAGTTTCGAGACCACTCTAATCCATTGCACCGCCCACCCATTTATGCAAA-	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATT.........................	23	2	22076.50	1858.00	146.50	634.50	19437.50
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATT.........................	22	2	13635.50	1564.50	106.00	419.50	11545.50
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCAT..........................	22	2	12878.00	655.00	19.00	182.50	12021.50
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCAT..........................	21	2	1721.00	132.00	0.50	28.00	1560.50
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCC............................	20	2	573.00	18.50	0.00	6.50	548.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCA...........................	21	2	552.50	195.50	2.00	41.00	314.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATTT........................	24	2	466.00	36.00	1.50	8.00	420.50
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATTT........................	23	2	353.50	29.00	1.00	4.00	319.50
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCAC..........................	22	2	298.50	1.50	0.00	0.00	297.00
..................................................................................................................................................................................................TTTCGAGACCACGCTAATCCATT.........................	23	2	63.50	0.00	0.00	0.50	63.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATC.........................	23	2	53.00	3.00	0.50	1.50	48.00
..................................................................................................................................................................................................TTTCGAGACCACACTAATCCATT.........................	23	2	50.00	1.50	0.00	0.00	48.50
..................................................................................................................................................................................................TTTCGAGACCACTCTAATC.............................	19	2	50.00	1.50	0.00	2.00	46.50
...................................................................................................................................................................................................TTCGAGACCACTCTAATCC............................	19	2	48.00	0.50	0.00	0.50	47.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCAC..........................	21	2	44.00	0.00	0.00	0.00	44.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCA...........................	20	2	43.50	6.50	0.00	4.50	32.50
..........................GTGTTTGGAATGGTCTCGTTAGCT................................................................................................................................................................................................	24	2	42.50	36.50	0.50	2.00	3.50
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATC.........................	22	2	37.50	1.00	0.00	0.50	36.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCAA..........................	22	2	37.00	2.00	0.50	0.50	34.00
...................................................................................................................................................................................................TTCGAGACCACTGTAATCCATT.........................	22	2	35.50	0.00	0.00	0.00	35.50
..................................................................................................................................................................................................TTTCGAGACCACGCTAATCCAT..........................	22	2	33.50	0.00	0.00	0.00	33.50
..........................GTGTTTGGAATGGTCTCGTT....................................................................................................................................................................................................	20	2	33.00	32.00	0.00	1.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACCCTAATCCATT.........................	23	2	32.50	3.00	0.00	0.50	29.00
..........................GTGTTTGGAATGGTCTCGTTAGC.................................................................................................................................................................................................	23	2	32.50	25.50	0.00	1.00	6.00
..................................................................................................................................................................................................TTTCGAGACCACACTAATCCAT..........................	22	2	29.00	0.50	0.00	0.00	28.50
..........................GTGTTTGGAATGGTCTCGTTAG..................................................................................................................................................................................................	22	2	25.00	24.00	0.00	1.00	0.00
..................................................................................................................................................................................................TTTCGAGGCCACTCTAATCCATT.........................	23	2	23.00	1.00	1.00	0.50	20.50
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCAG..........................	22	2	20.00	0.00	0.00	0.00	20.00
...................................................................................................................................................................................................TTCGAGACCACTATAATCCATT.........................	22	2	19.00	0.00	0.50	0.00	18.50
...................................................................................................................................................................................................TTCGAGACAACTCTAATCCATT.........................	22	2	18.50	2.00	0.00	0.00	16.50
............................GTTTGGAATGGTCTCGTTAGCT................................................................................................................................................................................................	22	2	17.00	15.50	0.50	0.50	0.50
..................................................................................................................................................................................................CTTCGAGACCACTCTAATCCATT.........................	23	2	16.50	3.00	0.00	1.50	12.00
.................................................................................................................................................................................................GTTTCGAGACCACTCTAATCCAT..........................	23	2	16.00	0.00	0.00	0.00	16.00
..........................GTGTTTGGAATGGTCTCGTTA...................................................................................................................................................................................................	21	2	15.00	14.00	0.00	1.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATTA........................	24	2	13.00	4.50	0.50	0.50	7.50
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCCTT.........................	23	2	13.00	1.50	1.50	1.00	9.00
..................................................................................................................................................................................................TTTCGAGACAACTCTAATCCATT.........................	23	2	12.50	2.50	0.50	0.50	9.00
....................................................................................................................................................................................................TCGAGACCACTCTAATCCATT.........................	21	2	12.50	4.00	0.00	0.50	8.00
..................................................................................................................................................................................................TTTCGAGACCACCCTAATCCAT..........................	22	2	12.50	1.00	0.00	0.50	11.00
..................................................................................................................................................................................................TTTCAAGACCACTCTAATCCATT.........................	23	2	12.00	3.50	0.00	0.00	8.50
..................................................................................................................................................................................................TTTCGAGACCACTCTAAT..............................	18	2	12.00	0.00	0.00	0.00	12.00
...........................TGTTTGGAATGGTCTCGTTAGCT................................................................................................................................................................................................	23	2	11.50	9.50	0.00	0.00	2.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCACT.........................	23	2	11.50	2.50	0.50	0.00	8.50
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATA.........................	23	2	11.00	4.50	0.00	1.50	5.00
............................GTTTGGAATGGTCTCGTTAGC.................................................................................................................................................................................................	21	2	11.00	10.00	0.00	0.00	1.00
.................................................................................................................................................................................................GTTTCGAGACCACTCTAATCC............................	21	2	10.50	0.00	0.00	0.00	10.50
..................................................................................................................................................................................................TTTCGAGGCCACTCTAATCCAT..........................	22	2	10.00	1.50	0.00	0.00	8.50
.................................................................................................................................................................................................CTTTCGAGACCACTCTAATCCATT.........................	24	2	10.00	2.50	0.00	0.50	7.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATA.........................	22	2	10.00	4.00	1.50	1.50	3.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATC.............................	18	2	9.50	0.00	0.00	0.50	9.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCTT..........................	22	2	9.50	0.00	0.00	1.00	8.50
..................................................................................................................................................................................................TTTCGAGACCGCTCTAATCCATT.........................	23	2	9.50	0.50	0.50	1.50	7.00
..................................................................................................................................................................................................TCTCGAGACCACTCTAATCCATT.........................	23	2	9.00	3.00	0.50	1.00	4.50
..................................................................................................................................................................................................TTTCGAGACTACTCTAATCCATT.........................	23	2	9.00	1.50	0.00	1.50	6.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATTA........................	23	2	9.00	5.00	0.00	0.00	4.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATTCATT.........................	23	2	9.00	0.50	0.50	0.50	7.50
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCACT.........................	22	2	8.50	1.00	0.00	0.50	7.00
...................................................................................................................................................................................................TTTGAGACCACTCTAATCCATT.........................	22	2	8.50	1.50	0.50	0.50	6.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCT...........................	21	2	8.50	0.00	0.00	0.00	8.50
...................................................................................................................................................................................................TTCGGGACCACTCTAATCCATT.........................	22	2	8.50	2.50	0.00	0.00	6.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAACCCATT.........................	23	2	8.00	3.50	0.50	0.50	3.50
..........................GTGTTTGGAATGGTCTCGTTT...................................................................................................................................................................................................	21	2	8.00	8.00	0.00	0.00	0.00
...................................................................................................................................................................................................TTCGAGACCGCTCTAATCCATT.........................	22	2	8.00	1.50	0.00	0.50	6.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCGTT.........................	23	2	8.00	0.50	1.50	2.00	4.00
..................................................................................................................................................................................................CTTCGAGACCACTCTAATCCAT..........................	22	2	7.50	1.00	0.00	0.00	6.50
...................................................................................................................................................................................................TTCAAGACCACTCTAATCCATT.........................	22	2	7.50	0.50	0.50	0.50	6.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATTTT.......................	25	2	7.50	1.00	0.00	0.00	6.50
..................................................................................................................................................................................................TTTCGAGACCACTCCAATCCATT.........................	23	2	7.50	1.50	0.50	0.50	5.00
...................................................................................................................................................................................................TTAGAGACCACTCTAATCCATT.........................	22	2	7.00	0.00	1.50	3.00	2.50
...................................................................................................................................................................................................TTCGAGACCACCCTAATCCATT.........................	22	2	7.00	2.00	0.00	0.50	4.50
..................................................................................................................................................................................................TTTCGGGACCACTCTAATCCAT..........................	22	2	7.00	1.50	0.00	0.50	5.00
...................................................................................................................................................................................................TTCGAGGCCACTCTAATCCATT.........................	22	2	7.00	0.50	0.50	0.50	5.50
..................................................................................................................................................................................................TTTCGAGAACACTCTAATCCATT.........................	23	2	6.50	0.00	1.50	0.00	5.00
..................................................................................................................................................................................................TTCCGAGACCACTCTAATCCATT.........................	23	2	6.50	2.00	0.00	1.00	3.50
..................................................................................................................................................................................................TTTCGAGACAACTCTAATCCAT..........................	22	2	6.50	0.00	0.00	0.50	6.00
...................................................................................................................................................................................................TTCGAGACCACTCCAATCCATT.........................	22	2	6.50	2.00	0.00	1.00	3.50
..................................................................................................................................................................................................TTTCGAAACCACTCTAATCCATT.........................	23	2	6.00	0.00	0.50	1.00	4.50
..................................................................................................................................................................................................TTTCGGGACCACTCTAATCCATT.........................	23	2	6.00	1.50	0.00	0.50	4.00
...................................................................................................................................................................................................TTCGAGACTACTCTAATCCATT.........................	22	2	6.00	0.50	0.00	0.50	5.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCCT..........................	22	2	6.00	0.50	0.00	0.00	5.50
..................................................................................................................................................................................................TTTCAAGACCACTCTAATCCAT..........................	22	2	6.00	0.00	0.00	0.00	6.00
..................................................................................................................................................................................................TTTCGAGACCGCTCTAATCCAT..........................	22	2	6.00	0.50	0.00	1.00	4.50
..................................................................................................................................................................................................TTTCGAGACCACTCTAGTCCATT.........................	23	2	6.00	1.00	0.00	2.00	3.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATG.........................	23	2	5.50	0.00	0.00	0.50	5.00
...........................TGTTTGGAATGGTCTCGTTAGC.................................................................................................................................................................................................	22	2	5.50	5.00	0.00	0.50	0.00
...................................................................................................................................................................................................TTCGAGACCACTCTGATCCATT.........................	22	2	5.50	1.00	0.00	0.00	4.50
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCCTT.........................	22	2	5.50	1.50	0.50	0.50	3.00
...................................................................................................................................................................................................TCCGAGACCACTCTAATCCATT.........................	22	2	5.50	1.50	0.00	1.50	2.50
......................................................................................................................................................................................................GAGACCACTCTAATCCATT.........................	19	2	5.50	2.00	0.50	1.50	1.50
..................................................................................................................................................................................................TTTCGAGAACACTCTAATCCAT..........................	22	2	5.50	0.00	0.00	0.00	5.50
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATTTT.......................	24	2	5.50	0.00	0.00	0.00	5.50
..................................................................................................................................................................................................TTTTGAGACCACTCTAATCCATT.........................	23	2	5.00	1.00	0.00	0.50	3.50
...................................................................................................................................................................................................CTCGAGACCACTCTAATCCATT.........................	22	2	5.00	2.00	0.00	0.00	3.00
..................................................................................................................................................................................................TTTCGAGACCAATCTAATCCAT..........................	22	2	5.00	1.00	0.00	0.00	4.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCGTT.........................	22	2	5.00	2.00	1.00	0.00	2.00
.................................................................................................................................................................................................CTTTCGAGACCACTCTAATCCAT..........................	23	2	5.00	1.50	0.00	0.00	3.50
..................................................................................................................................................................................................TTTCGAGATCACTCTAATCCATT.........................	23	2	5.00	0.00	0.00	0.00	5.00
..................................................................................................................................................................................................TTTCGAGACCATTCTAATCCATT.........................	23	2	5.00	0.50	0.00	0.50	4.00
..................................................................................................................................................................................................TTTCGAGACCACTCTGATCCATT.........................	23	2	5.00	0.50	0.50	0.50	3.50
..................................................................................................................................................................................................TTTCGAGACCAATCTAATCCATT.........................	23	2	5.00	0.00	0.50	0.00	4.50

droPer1

ATGTGC-ACTTCTACTGATCGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

droWil1

ATGTGC-AATTATACTGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAACAAGTGCTTG--GGGCAATTGAGCC-AAAAACAAAACAGAAAAAAGAAAATGCACTTTGCCATCAAAACGAATGTGCGAATATG-CA--ATTT-----GGCCAGGCTCCTCGAACATAACACTAAGAGGTGTAGTTTCGAGACCACTCTAATCCATTGCCACATTTTTCACAATATGCAAA-	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATT.........................	23	1	238163.00	4364.00	3753.00	712.00	229334.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCAT..........................	22	1	151352.00	2448.00	1094.00	297.00	147513.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATT.........................	22	1	70595.00	2541.00	1602.00	359.00	66093.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCAC..........................	22	1	10756.00	2.00	0.00	0.00	10754.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCC............................	20	1	10457.00	65.00	9.00	2.00	10381.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCAT..........................	21	1	9173.00	340.00	45.00	30.00	8758.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATTT........................	24	1	8209.00	62.00	6.00	3.00	8138.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCA...........................	21	1	5668.00	577.00	130.00	41.00	4920.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATTT........................	23	1	3054.00	50.00	10.00	4.00	2990.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATC.........................	23	1	1583.00	6.00	3.00	3.00	1571.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCAA..........................	22	1	1187.00	8.00	5.00	0.00	1174.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCAG..........................	22	1	809.00	0.00	0.00	0.00	809.00
.................................................................................................................................................................................................GTTTCGAGACCACTCTAATCCAT..........................	23	1	777.00	3.00	1.00	0.00	773.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCAC..........................	21	1	658.00	0.00	0.00	0.00	658.00
..................................................................................................................................................................................................TTTCGAGACCACGCTAATCCATT.........................	23	1	610.00	1.00	0.00	0.00	609.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATC.............................	19	1	609.00	3.00	4.00	7.00	595.00
..................................................................................................................................................................................................TTTCGAGACCACACTAATCCATT.........................	23	1	583.00	3.00	1.00	2.00	577.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCT...........................	21	1	543.00	3.00	3.00	1.00	536.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATC.........................	22	1	476.00	3.00	1.00	2.00	470.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCC............................	19	1	407.00	0.00	0.00	0.00	407.00
..................................................................................................................................................................................................TTTCGAGACCACGCTAATCCAT..........................	22	1	403.00	0.00	0.00	0.00	403.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATA.........................	23	1	378.00	23.00	39.00	5.00	311.00
..................................................................................................................................................................................................TTTCGAGGCCACTCTAATCCATT.........................	23	1	374.00	10.00	3.00	3.00	358.00
..................................................................................................................................................................................................TTTCGAGACCACACTAATCCAT..........................	22	1	361.00	0.00	0.00	0.00	361.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCTT..........................	22	1	346.00	1.00	1.00	0.00	344.00
..................................................................................................................................................................................................TTTCGAGACCACCCTAATCCATT.........................	23	1	321.00	7.00	7.00	0.00	307.00
.................................................................................................................................................................................................GTTTCGAGACCACTCTAATCC............................	21	1	248.00	1.00	0.00	0.00	247.00
.................................................................................................................................................................................................GTTTCGAGACCACTCTAATCCATT.........................	24	1	227.00	0.00	0.00	0.00	227.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATA.........................	22	1	220.00	14.00	30.00	4.00	172.00
..................................................................................................................................................................................................TTTCGAGGCCACTCTAATCCAT..........................	22	1	216.00	5.00	1.00	0.00	210.00
..................................................................................................................................................................................................TTTCGAGACCACCCTAATCCAT..........................	22	1	196.00	3.00	0.00	1.00	192.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCA...........................	20	1	184.00	17.00	3.00	1.00	163.00
...................................................................................................................................................................................................TTCGAGACCACTGTAATCCATT.........................	22	1	166.00	0.00	0.00	0.00	166.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATTTT.......................	25	1	163.00	1.00	0.00	0.00	162.00
..................................................................................................................................................................................................CTTCGAGACCACTCTAATCCATT.........................	23	1	144.00	5.00	12.00	3.00	124.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATG.........................	23	1	142.00	3.00	2.00	0.00	137.00
..........................GTGTTTGGAATGGTCTCGTTAGCT................................................................................................................................................................................................	24	1	136.00	80.00	7.00	1.00	48.00
...................................................................................................................................................................................................TTCGAGACCACTATAATCCATT.........................	22	1	128.00	1.00	1.00	0.00	126.00
...................................................................................................................................................................................................TTCGAGACAACTCTAATCCATT.........................	22	1	121.00	3.00	1.00	0.00	117.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCCTT.........................	23	1	120.00	4.00	3.00	1.00	112.00
..................................................................................................................................................................................................TTTCGAGACAACTCTAATCCATT.........................	23	1	116.00	2.00	7.00	2.00	105.00
..........................GTGTTTGGAATGGTCTCGTTAGC.................................................................................................................................................................................................	23	1	111.00	59.00	8.00	3.00	41.00
..................................................................................................................................................................................................TTTCGAGAACACTCTAATCCATT.........................	23	1	111.00	0.00	1.00	1.00	109.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATTA........................	24	1	110.00	9.00	4.00	1.00	96.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATTTT.......................	24	1	110.00	2.00	0.00	1.00	107.00
............................GTTTGGAATGGTCTCGTTAGCT................................................................................................................................................................................................	22	1	107.00	65.00	12.00	8.00	22.00
..................................................................................................................................................................................................TTTCGAGACCGCTCTAATCCATT.........................	23	1	102.00	5.00	3.00	2.00	92.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAAT..............................	18	1	99.00	0.00	0.00	0.00	99.00
....................................................................................................................................................................................................TCGAGACCACTCTAATCCATT.........................	21	1	98.00	20.00	8.00	3.00	67.00
.................................................................................................................................................................................................CTTTCGAGACCACTCTAATCCATT.........................	24	1	93.00	0.00	7.00	0.00	86.00
..................................................................................................................................................................................................TTTCGAGAACACTCTAATCCAT..........................	22	1	92.00	0.00	2.00	0.00	90.00
..................................................................................................................................................................................................TTTCAAGACCACTCTAATCCATT.........................	23	1	89.00	3.00	2.00	2.00	82.00
..................................................................................................................................................................................................TTTCGGGACCACTCTAATCCATT.........................	23	1	89.00	3.00	1.00	0.00	85.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCC...........................	21	1	86.00	3.00	0.00	1.00	82.00
...................................................................................................................................................................................................TTCGAGGCCACTCTAATCCATT.........................	22	1	85.00	4.00	1.00	0.00	80.00
..................................................................................................................................................................................................TTTCGAGACTACTCTAATCCATT.........................	23	1	83.00	3.00	2.00	0.00	78.00
..................................................................................................................................................................................................CTTCGAGACCACTCTAATCCAT..........................	22	1	83.00	5.00	3.00	3.00	72.00
..................................................................................................................................................................................................TTTCGGGACCACTCTAATCCAT..........................	22	1	81.00	4.00	0.00	0.00	77.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCACT.........................	23	1	81.00	3.00	4.00	0.00	74.00
.................................................................................................................................................................................................GTTTCGAGACCACTCTAATCCT...........................	22	1	80.00	0.00	0.00	0.00	80.00
..................................................AACGGATGAACAAGTGCTTG--GGGC......................................................................................................................................................................	24	1	79.00	69.00	1.00	0.00	9.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCCT..........................	22	1	78.00	1.00	1.00	0.00	76.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAGTCCATT.........................	23	1	77.00	4.00	0.00	0.00	73.00
.................................................................................................................................................................................................GTTTCGAGACCACTCTAATCCA...........................	22	1	77.00	2.00	2.00	0.00	73.00
..................................................................................................................................................................................................TTTCGAGACCGCTCTAATCCAT..........................	22	1	75.00	1.00	0.00	0.00	74.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCG...........................	21	1	74.00	1.00	0.00	0.00	73.00
..................................................................................................................................................................................................TTTTGAGACCACTCTAATCCATT.........................	23	1	72.00	1.00	6.00	0.00	65.00
..................................................................................................................................................................................................TTTCGAGACTACTCTAATCCAT..........................	22	1	71.00	2.00	2.00	0.00	67.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATC.............................	18	1	70.00	1.00	0.00	0.00	69.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAACCCATT.........................	23	1	70.00	0.00	1.00	2.00	67.00
..................................................................................................................................................................................................TTTCGAGACAACTCTAATCCAT..........................	22	1	68.00	0.00	2.00	1.00	65.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCGTT.........................	23	1	66.00	3.00	2.00	0.00	61.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCAAA.........................	23	1	66.00	0.00	0.00	0.00	66.00
..................................................................................................................................................................................................TTTCTAGACCACTCTAATCCATT.........................	23	1	65.00	3.00	5.00	2.00	55.00
..................................................................................................................................................................................................TTTCGAGATCACTCTAATCCATT.........................	23	1	64.00	2.00	3.00	2.00	57.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAGTCCAT..........................	22	1	62.00	1.00	1.00	0.00	60.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCTATT.........................	23	1	62.00	4.00	0.00	1.00	57.00
.................................................................................................................................................................................................CTTTCGAGACCACTCTAATCCAT..........................	23	1	59.00	1.00	0.00	1.00	57.00
..................................................................................................................................................................................................TTTCTAGACCACTCTAATCCAT..........................	22	1	57.00	1.00	1.00	0.00	55.00
..................................................................................................................................................................................................TTTCGAAACCACTCTAATCCATT.........................	23	1	56.00	1.00	0.00	1.00	54.00
..................................................................................................................................................................................................TTTCAAGACCACTCTAATCCAT..........................	22	1	55.00	0.00	0.00	0.00	55.00
..................................................................................................................................................................................................TTTCGAGACCACTCTGATCCATT.........................	23	1	54.00	3.00	1.00	2.00	48.00
..................................................................................................................................................................................................TTTCGAGATCACTCTAATCCAT..........................	22	1	53.00	1.00	0.00	1.00	51.00
..................................................................................................................................................................................................TCTCGAGACCACTCTAATCCATT.........................	23	1	52.00	4.00	1.00	0.00	47.00
..................................................................................................................................................................................................TTTCGAGACCATTCTAATCCATT.........................	23	1	49.00	3.00	1.00	0.00	45.00
.................................................................................................................................................................................................GTTTCGAGACCACTCTAATCCAC..........................	23	1	49.00	0.00	0.00	0.00	49.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAACCCAT..........................	22	1	48.00	2.00	1.00	0.00	45.00
...................................................................................................................................................................................................TTCGGGACCACTCTAATCCATT.........................	22	1	47.00	3.00	2.00	1.00	41.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATTA........................	23	1	47.00	6.00	2.00	0.00	39.00
..................................................................................................................................................................................................TTTCGAGACCAATCTAATCCATT.........................	23	1	47.00	0.00	4.00	4.00	39.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATTCATT.........................	23	1	46.00	2.00	2.00	1.00	41.00
...................................................................................................................................................................................................TTCGAGACCACCCTAATCCATT.........................	22	1	45.00	4.00	0.00	0.00	41.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCAAT.........................	23	1	45.00	0.00	1.00	1.00	43.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCTTT.........................	23	1	43.00	0.00	1.00	1.00	41.00
..................................................................................................................................................................................................TTTTGAGACCACTCTAATCCAT..........................	22	1	42.00	0.00	0.00	0.00	42.00
..................................................................................................................................................................................................TTTCGAGAGCACTCTAATCCATT.........................	23	1	42.00	2.00	0.00	0.00	40.00
..................................................................................................................................................................................................TTTCGAAACCACTCTAATCCAT..........................	22	1	42.00	1.00	0.00	0.00	41.00
...................................................................................................................................................................................................CTCGAGACCACTCTAATCCATT.........................	22	1	41.00	1.00	2.00	2.00	36.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCGT..........................	22	1	41.00	0.00	2.00	0.00	39.00
..................................................................................................................................................................................................TTTCGAGACCACTCCAATCCAT..........................	22	1	40.00	0.00	1.00	0.00	39.00

droVir3

ATGCGCGAAATTTAACGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAACA----------------TTGACCA-A---------------------AGCGCACCTTAC-A-------------------------------------------------------------GCGTAGTGTAGTTTCGAGACCACTCTAATCCATTGCATCGTTTCTGGGCATATGCAAA-	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATT.........................	23	1	171711.00	8763.00	118.00	41.00	154469.00	8320.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATT.........................	22	1	127013.00	7597.00	134.00	52.00	113638.00	5592.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCAT..........................	22	1	113703.00	3491.00	58.00	14.00	105093.00	5047.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCC............................	20	1	23211.00	162.00	8.00	0.00	22111.00	930.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCAT..........................	21	1	20661.00	828.00	15.00	1.00	19066.00	751.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCA...........................	21	1	9597.00	1671.00	17.00	0.00	7602.00	307.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCAC..........................	22	1	7596.00	2.00	1.00	1.00	7148.00	444.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATTT........................	23	1	7203.00	233.00	4.00	2.00	6661.00	303.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATTT........................	24	1	6332.00	204.00	3.00	1.00	5772.00	352.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATC.........................	23	1	1874.00	35.00	0.00	0.00	1736.00	103.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCAC..........................	21	1	1351.00	2.00	0.00	0.00	1279.00	70.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATC.............................	19	1	1326.00	7.00	0.00	2.00	1262.00	55.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCAG..........................	22	1	1228.00	5.00	0.00	0.00	1170.00	53.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATC.........................	22	1	1175.00	15.00	0.00	0.00	1084.00	76.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCC............................	19	1	949.00	2.00	0.00	1.00	911.00	35.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCA...........................	20	1	680.00	88.00	2.00	0.00	574.00	16.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCCTT.........................	23	1	435.00	6.00	1.00	0.00	402.00	26.00
..........................GTGTTTGGAATGGTCTCGTTAGC.................................................................................................................................................................................................	23	1	349.00	142.00	0.00	1.00	203.00	3.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCCTT.........................	22	1	347.00	5.00	1.00	1.00	327.00	13.00
..........................GTGTTTGGAATGGTCTCGTTAGCT................................................................................................................................................................................................	24	1	324.00	149.00	0.00	0.00	175.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCCT..........................	22	1	291.00	0.00	1.00	0.00	277.00	13.00
..................................................................................................................................................................................................TTTCGAGGCCACTCTAATCCATT.........................	23	1	282.00	5.00	2.00	0.00	260.00	15.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATG.........................	23	1	270.00	0.00	0.00	0.00	257.00	13.00
..........................GTGTTTGGAATGGTCTCGTTAG..................................................................................................................................................................................................	22	1	256.00	243.00	0.00	0.00	13.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCAA..........................	22	1	234.00	10.00	0.00	0.00	211.00	13.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCG...........................	21	1	231.00	0.00	0.00	0.00	222.00	9.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCAG..........................	21	1	228.00	0.00	0.00	0.00	218.00	10.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATTC........................	24	1	206.00	8.00	0.00	0.00	195.00	3.00
..................................................................................................................................................................................................CTTCGAGACCACTCTAATCCATT.........................	23	1	201.00	19.00	0.00	1.00	174.00	7.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATG.........................	22	1	200.00	7.00	1.00	0.00	182.00	10.00
..................................................................................................................................................................................................TTTCGAGGCCACTCTAATCCAT..........................	22	1	182.00	3.00	0.00	0.00	173.00	6.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATTC........................	23	1	182.00	5.00	0.00	0.00	171.00	6.00
..................................................................................................................................................................................................TTTCGAGACAACTCTAATCCATT.........................	23	1	170.00	2.00	0.00	0.00	161.00	7.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATTTT.......................	25	1	169.00	5.00	0.00	0.00	145.00	19.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATTTT.......................	24	1	147.00	3.00	0.00	0.00	142.00	2.00
...................................................................................................................................................................................................TTCGAGGCCACTCTAATCCATT.........................	22	1	145.00	7.00	0.00	0.00	133.00	5.00
...................................................................................................................................................................................................TTCGAGACAACTCTAATCCATT.........................	22	1	142.00	0.00	0.00	0.00	137.00	5.00
..................................................................................................................................................................................................TTTCGAGACCACCCTAATCCATT.........................	23	1	132.00	13.00	0.00	0.00	115.00	4.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAAT..............................	18	1	127.00	0.00	0.00	0.00	124.00	3.00
..................................................................................................................................................................................................TTTCGAGACAACTCTAATCCAT..........................	22	1	120.00	1.00	0.00	0.00	112.00	7.00
...................................................................................................................................................................................................TTCGGGACCACTCTAATCCATT.........................	22	1	111.00	6.00	0.00	0.00	100.00	5.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATA.........................	23	1	106.00	20.00	0.00	0.00	78.00	8.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCT...........................	21	1	104.00	3.00	0.00	0.00	95.00	6.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATC.............................	18	1	97.00	0.00	0.00	0.00	91.00	6.00
...................................................................................................................................................................................................TTCGAGACCACCCTAATCCATT.........................	22	1	95.00	8.00	0.00	0.00	84.00	3.00
..................................................................................................................................................................................................TTTCGGGACCACTCTAATCCATT.........................	23	1	93.00	5.00	0.00	0.00	85.00	3.00
..................................................................................................................................................................................................CTTCGAGACCACTCTAATCCAT..........................	22	1	91.00	6.00	0.00	0.00	78.00	7.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATTA........................	23	1	90.00	11.00	0.00	0.00	77.00	2.00
..................................................................................................................................................................................................TTTCGAGACCAATCTAATCCATT.........................	23	1	87.00	6.00	0.00	0.00	76.00	5.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCAATT.........................	22	1	85.00	7.00	0.00	0.00	74.00	4.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATTA........................	24	1	85.00	12.00	0.00	0.00	71.00	2.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATA.........................	22	1	84.00	16.00	0.00	0.00	66.00	2.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAGTCCATT.........................	23	1	84.00	5.00	0.00	0.00	72.00	7.00
...................................................................................................................................................................................................CTCGAGACCACTCTAATCCATT.........................	22	1	80.00	7.00	1.00	0.00	65.00	7.00
..................................................................................................................................................................................................TTTCGAGACCACCCTAATCCAT..........................	22	1	80.00	0.00	0.00	0.00	76.00	4.00
...........................TGTTTGGAATGGTCTCGTTAGCT................................................................................................................................................................................................	23	1	80.00	40.00	0.00	0.00	40.00	0.00
....................................................................................................................................................................................................TCGAGACCACTCTAATCCATT.........................	21	1	80.00	13.00	0.00	0.00	64.00	3.00
..................................................................................................................................................................................................TTTCGAGACCGCTCTAATCCATT.........................	23	1	79.00	3.00	1.00	0.00	71.00	4.00
..................................................................................................................................................................................................TTTCGAGAACACTCTAATCCATT.........................	23	1	78.00	1.00	0.00	1.00	73.00	3.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCTT..........................	22	1	78.00	6.00	0.00	0.00	69.00	3.00
...........................TGTTTGGAATGGTCTCGTTAGC.................................................................................................................................................................................................	22	1	77.00	53.00	0.00	2.00	22.00	0.00
.................................................................................................................................................................................................CTTTCGAGACCACTCTAATCCATT.........................	24	1	77.00	6.00	0.00	0.00	66.00	5.00
...................................................................................................................................................................................................TTCGAGACCGCTCTAATCCATT.........................	22	1	73.00	4.00	0.00	0.00	67.00	2.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCACT.........................	23	1	69.00	8.00	0.00	1.00	55.00	5.00
..................................................................................................................................................................................................TTTCAAGACCACTCTAATCCATT.........................	23	1	69.00	8.00	0.00	0.00	58.00	3.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATACATT.........................	23	1	68.00	6.00	2.00	0.00	56.00	4.00
..................................................................................................................................................................................................TTTCGAGACCACTCTACTCCATT.........................	23	1	65.00	2.00	0.00	0.00	62.00	1.00
...................................................................................................................................................................................................TTCAAGACCACTCTAATCCATT.........................	22	1	62.00	4.00	0.00	0.00	55.00	3.00
...................................................................................................................................................................................................TTCGAGACTACTCTAATCCATT.........................	22	1	59.00	6.00	0.00	0.00	51.00	2.00
..................................................................................................................................................................................................TTTCGAGACCGCTCTAATCCAT..........................	22	1	59.00	1.00	0.00	0.00	52.00	6.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCAATT.........................	23	1	58.00	5.00	0.00	0.00	50.00	3.00
..................................................................................................................................................................................................TTTCGGGACCACTCTAATCCAT..........................	22	1	58.00	5.00	0.00	0.00	50.00	3.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAGTCCAT..........................	22	1	57.00	2.00	0.00	0.00	54.00	1.00
..................................................................................................................................................................................................TTTCGAGACCACTCTACTCCAT..........................	22	1	56.00	2.00	1.00	0.00	52.00	1.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAACCCATT.........................	23	1	54.00	11.00	0.00	0.00	42.00	1.00
..................................................................................................................................................................................................TTTCGAAACCACTCTAATCCATT.........................	23	1	52.00	6.00	1.00	1.00	41.00	3.00
...................................................................................................................................................................................................TTCGAGCCCACTCTAATCCATT.........................	22	1	52.00	2.00	0.00	0.00	47.00	3.00
...................................................................................................................................................................................................TTTGAGACCACTCTAATCCATT.........................	22	1	52.00	5.00	1.00	0.00	43.00	3.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCGTT.........................	23	1	52.00	6.00	0.00	0.00	44.00	2.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATACAT..........................	22	1	48.00	1.00	0.00	0.00	44.00	3.00
..................................................................................................................................................................................................TTTCGAGACCAATCTAATCCAT..........................	22	1	48.00	1.00	0.00	0.00	44.00	3.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATTCATT.........................	23	1	47.00	1.00	0.00	0.00	44.00	2.00
...................................................................................................................................................................................................TTCGAGACCACTCTAACCCATT.........................	22	1	46.00	12.00	0.00	0.00	33.00	1.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCCT..........................	21	1	45.00	0.00	0.00	0.00	40.00	5.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCACT.........................	22	1	45.00	3.00	0.00	0.00	40.00	2.00
.................................................................................................................................................................................................CTTTCGAGACCACTCTAATCCAT..........................	23	1	44.00	3.00	0.00	0.00	37.00	4.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCAAT..........................	22	1	44.00	4.00	0.00	0.00	36.00	4.00
..................................................................................................................................................................................................TTTCGAGGCCACTCTAATCC............................	20	1	43.00	0.00	0.00	0.00	42.00	1.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCCC..........................	22	1	42.00	0.00	0.00	0.00	36.00	6.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCGT..........................	22	1	42.00	2.00	0.00	0.00	40.00	0.00
..................................................................................................................................................................................................TTTCGAGATCACTCTAATCCATT.........................	23	1	41.00	0.00	0.00	0.00	38.00	3.00
..................................................................................................................................................................................................TTTCGAGACTACTCTAATCCATT.........................	23	1	40.00	6.00	0.00	0.00	33.00	1.00
..................................................................................................................................................................................................TTTCGAGACTACTCTAATCCAT..........................	22	1	40.00	1.00	0.00	0.00	39.00	0.00
...................................................................................................................................................................................................TTCGAGACGACTCTAATCCATT.........................	22	1	39.00	0.00	0.00	0.00	36.00	3.00
..................................................................................................................................................................................................TTTTGAGACCACTCTAATCCAT..........................	22	1	39.00	1.00	0.00	0.00	37.00	1.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCGTT.........................	22	1	38.00	4.00	1.00	0.00	33.00	0.00
..................................................................................................................................................................................................TTTTGAGACCACTCTAATCCATT.........................	23	1	38.00	5.00	0.00	0.00	30.00	3.00
..................................................................................................................................................................................................TTTCGAGACCACACTAATCCATT.........................	23	1	38.00	14.00	1.00	0.00	22.00	1.00
..................................................................................................................................................................................................TCTCGAGACCACTCTAATCCATT.........................	23	1	38.00	10.00	0.00	0.00	27.00	1.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCTATT.........................	23	1	38.00	4.00	0.00	0.00	32.00	2.00

droMoj3

ATGTGCGAAATTCAACGATCGTTATCGTGTTTGGAATGGTCTCGTTAGCTAACGGATGAACA----------------TTAACCA-A---------------------AGCGCACCTTAC--------------------------------------------------------------GGCGTAGTGTAGTTTCGAGACCACTCTAATCCATTGCACCGTTTCTTTCCATATGCAAA-	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATT.........................	22	1	8432.00	8116.00	165.00	123.00	28.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATT.........................	23	1	6371.00	6061.00	166.00	114.00	30.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCAT..........................	22	1	1887.00	1765.00	76.00	40.00	6.00
..........................GTGTTTGGAATGGTCTCGTTAGC.................................................................................................................................................................................................	23	1	1414.00	1412.00	2.00	0.00	0.00
..........................GTGTTTGGAATGGTCTCGTTAGCT................................................................................................................................................................................................	24	1	1340.00	1331.00	8.00	0.00	1.00
..........................GTGTTTGGAATGGTCTCGTTAG..................................................................................................................................................................................................	22	1	1254.00	1246.00	5.00	3.00	0.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCAT..........................	21	1	675.00	646.00	18.00	11.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCA...........................	21	1	364.00	351.00	9.00	4.00	0.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATTT........................	23	1	201.00	191.00	7.00	3.00	0.00
..........................GTGTTTGGAATGGTCTCGTTA...................................................................................................................................................................................................	21	1	118.00	117.00	1.00	0.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATTT........................	24	1	111.00	108.00	1.00	1.00	1.00
..........................GTGTTTGGAATGGTCTCGTT....................................................................................................................................................................................................	20	1	86.00	85.00	1.00	0.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCC............................	20	1	67.00	62.00	3.00	2.00	0.00
............................GTTTGGAATGGTCTCGTTAGC.................................................................................................................................................................................................	21	1	61.00	61.00	0.00	0.00	0.00
...........................TGTTTGGAATGGTCTCGTTAGCT................................................................................................................................................................................................	23	1	59.00	59.00	0.00	0.00	0.00
..........................GTGTTTGGAATGGTCTCGTTAGT.................................................................................................................................................................................................	23	1	49.00	49.00	0.00	0.00	0.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCA...........................	20	1	47.00	43.00	3.00	1.00	0.00
............................GTTTGGAATGGTCTCGTTAGCT................................................................................................................................................................................................	22	1	40.00	38.00	0.00	1.00	1.00
...........................TGTTTGGAATGGTCTCGTTAGC.................................................................................................................................................................................................	22	1	38.00	38.00	0.00	0.00	0.00
....................................................................................................................................................................................................TCGAGACCACTCTAATCCATT.........................	21	1	31.00	31.00	0.00	0.00	0.00
..........................GTGTTTGGAATGGTCTCGTTAGCTT...............................................................................................................................................................................................	25	1	25.00	25.00	0.00	0.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATC.............................	19	1	21.00	3.00	10.00	8.00	0.00
...........................TGTTTGGAATGGTCTCGTTAG..................................................................................................................................................................................................	21	1	19.00	18.00	1.00	0.00	0.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATA.........................	22	1	18.00	17.00	1.00	0.00	0.00
..........................GTGTTTGGAATGGTCTCGTTAGA.................................................................................................................................................................................................	23	1	18.00	18.00	0.00	0.00	0.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATTA........................	23	1	16.00	15.00	1.00	0.00	0.00
..........................GTGTTTGGAATGGTCTCGTTAGCTAA..............................................................................................................................................................................................	26	1	15.00	15.00	0.00	0.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATTA........................	24	1	14.00	13.00	0.00	1.00	0.00
...................................................................................................................................................................................................TTCGATACCACTCTAATCCATT.........................	22	1	14.00	14.00	0.00	0.00	0.00
..........................GTGTTTGGAATGGTCTCGTTAGCA................................................................................................................................................................................................	24	1	11.00	11.00	0.00	0.00	0.00
...................................................................................................................................................................................................TTCGAGACCACTCTCATCCATT.........................	22	1	10.00	2.00	0.00	7.00	1.00
...................................................................................................................................................................................................TTCGAGGCCACTCTAATCCATT.........................	22	1	10.00	10.00	0.00	0.00	0.00
..........................GTGTTTGGAATGGTCTCGTTT...................................................................................................................................................................................................	21	1	10.00	10.00	0.00	0.00	0.00
..................................................................................................................................................................................................TTTCTAGACCACTCTAATCCATT.........................	23	1	10.00	10.00	0.00	0.00	0.00
............................GTTTGGAATGGTCTCGTTAG..................................................................................................................................................................................................	20	1	10.00	10.00	0.00	0.00	0.00
....................................................................................................................................................................................................TCGAGACCACTCTAATCCAT..........................	20	1	10.00	9.00	0.00	1.00	0.00
..........................GTGTTTGGAATGGTCTCGTTAGCTA...............................................................................................................................................................................................	25	1	9.00	9.00	0.00	0.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATA.........................	23	1	9.00	8.00	0.00	0.00	1.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATC.........................	22	1	9.00	8.00	1.00	0.00	0.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCAATT.........................	22	1	8.00	8.00	0.00	0.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATC.........................	23	1	8.00	8.00	0.00	0.00	0.00
..................................................................................................................................................................................................TTTAGAGACCACTCTAATCCATT.........................	23	1	8.00	8.00	0.00	0.00	0.00
...................................................................................................................................................................................................CTCGAGACCACTCTAATCCATT.........................	22	1	7.00	7.00	0.00	0.00	0.00
..........................GTGTTTGGAATGGTCTCGT.....................................................................................................................................................................................................	19	1	7.00	7.00	0.00	0.00	0.00
...................................................................................................................................................................................................TTCGAGACCACCCTAATCCATT.........................	22	1	7.00	6.00	1.00	0.00	0.00
...................................................................................................................................................................................................TTCGAGACTACTCTAATCCATT.........................	22	1	7.00	6.00	1.00	0.00	0.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCCTT.........................	22	1	7.00	2.00	1.00	4.00	0.00
..........................GTTTTTGGAATGGTCTCGTTAGCT................................................................................................................................................................................................	24	1	7.00	7.00	0.00	0.00	0.00
...................................................................................................................................................................................................TTCGGGACCACTCTAATCCATT.........................	22	1	7.00	5.00	2.00	0.00	0.00
..................................................................................................................................................................................................CTTCGAGACCACTCTAATCCATT.........................	23	1	7.00	7.00	0.00	0.00	0.00
..............................TTGGAATGGTCTCGTTAGCT................................................................................................................................................................................................	20	1	6.00	6.00	0.00	0.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCCTT.........................	23	1	6.00	1.00	0.00	4.00	1.00
..................................................................................................................................................................................................TTTCGAGGCCACTCTAATCCATT.........................	23	1	6.00	5.00	0.00	1.00	0.00
..........................GTGTTTGGAATGGTCTCGTTAT..................................................................................................................................................................................................	22	1	6.00	6.00	0.00	0.00	0.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCTATT.........................	22	1	6.00	6.00	0.00	0.00	0.00
...................................................................................................................................................................................................TTCGAGACCGCTCTAATCCATT.........................	22	1	6.00	6.00	0.00	0.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACCCTAATCCATT.........................	23	1	6.00	6.00	0.00	0.00	0.00
..........................GTGTTTTGAATGGTCTCGTTAGCT................................................................................................................................................................................................	24	1	5.00	5.00	0.00	0.00	0.00
..................................................................................................................................................................................................TTTCAAGACCACTCTAATCCATT.........................	23	1	5.00	4.00	0.00	1.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATTC........................	24	1	5.00	5.00	0.00	0.00	0.00
.............................TTTGGAATGGTCTCGTTAGC.................................................................................................................................................................................................	20	1	5.00	5.00	0.00	0.00	0.00
...................................................................................................................................................................................................TTCGAAACCACTCTAATCCATT.........................	22	1	5.00	5.00	0.00	0.00	0.00
...................................................................................................................................................................................................TTAGAGACCACTCTAATCCATT.........................	22	1	5.00	5.00	0.00	0.00	0.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATTC........................	23	1	5.00	5.00	0.00	0.00	0.00
......................................................................................................................................................................................................GAGACCACTCTAATCCATT.........................	19	1	4.00	3.00	1.00	0.00	0.00
..........................GTGTTTGGAATGGCCTCGTTAG..................................................................................................................................................................................................	22	1	4.00	4.00	0.00	0.00	0.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATACATT.........................	22	1	4.00	2.00	0.00	1.00	1.00
........................GTGTGTTTGGAATGGTCTCGTTAGC.................................................................................................................................................................................................	25	1	4.00	4.00	0.00	0.00	0.00
..........................GTGTTTGGAATGGTCTCGTTAGTT................................................................................................................................................................................................	24	1	4.00	4.00	0.00	0.00	0.00
...................................................................................................................................................................................................TTCGAGACCACACTAATCCATT.........................	22	1	4.00	4.00	0.00	0.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCCT..........................	22	1	4.00	0.00	0.00	4.00	0.00
..........................GTGTTTGGAATGGTCTCTTTAGCT................................................................................................................................................................................................	24	1	4.00	4.00	0.00	0.00	0.00
...................................................................................................................................................................................................TTCGAGACCAxxCTAATCCATT.........................	20	1	4.00	4.00	0.00	0.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATACATT.........................	23	1	4.00	4.00	0.00	0.00	0.00
...................................................................................................................................................................................................TTTGAGACCACTCTAATCCATT.........................	22	1	4.00	3.00	0.00	1.00	0.00
..................................................................................................................................................................................................TTTCGAGACTACTCTAATCCATT.........................	23	1	4.00	3.00	1.00	0.00	0.00
...................................................................................................................................................................................................TTCGAGACCACTCTxATCCATT.........................	21	1	4.00	4.00	0.00	0.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACTCTACTCCATT.........................	23	1	4.00	2.00	0.00	1.00	1.00
..................................................................................................................................................................................................TTTCGATACCACTCTAATCCATT.........................	23	1	4.00	4.00	0.00	0.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAGTCCATT.........................	23	1	4.00	4.00	0.00	0.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACTATAATCCATT.........................	23	1	4.00	4.00	0.00	0.00	0.00
...................................................................................................................................................................................................TTCGAGACCCCTCTAATCCATT.........................	22	1	4.00	3.00	0.00	1.00	0.00
...................................................................................................................................................................................................TTCGAGACCAATCTAATCCATT.........................	22	1	4.00	2.00	1.00	1.00	0.00
.............................TTTGGAATGGTCTCGTTAGCT................................................................................................................................................................................................	21	1	4.00	4.00	0.00	0.00	0.00
...................................................................................................................................................................................................TCCGAGACCACTCTAATCCATT.........................	22	1	4.00	4.00	0.00	0.00	0.00
..................................................................................................................................................................................................TTTCGAAACCACTCTAATCCATT.........................	23	1	3.00	3.00	0.00	0.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACTCTGATCCATT.........................	23	1	3.00	1.00	1.00	0.00	1.00
..................................................................................................................................................................................................TTTCGAGACCATTCTAATCCATT.........................	23	1	3.00	3.00	0.00	0.00	0.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCC............................	19	1	3.00	2.00	1.00	0.00	0.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATAA........................	23	1	3.00	3.00	0.00	0.00	0.00
...................................................................................................................................................................................................TTCGAGACCACTCTAGTCCATT.........................	22	1	3.00	2.00	0.00	0.00	1.00
..............................TTGGAATGGTCTCGTTAGC.................................................................................................................................................................................................	19	1	3.00	3.00	0.00	0.00	0.00
...................................................................................................................................................................................................TTCAAGACCACTCTAATCCATT.........................	22	1	3.00	3.00	0.00	0.00	0.00
..................................................................................................................................................................................................TTTCGAGACGACTCTAATCCATT.........................	23	1	3.00	3.00	0.00	0.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACTCTATTCCATT.........................	23	1	3.00	2.00	1.00	0.00	0.00
..........................GTGTTTGGAATGGTCTCGTTAGCTAAC.............................................................................................................................................................................................	27	1	3.00	3.00	0.00	0.00	0.00
..........................GTGTTTGGAATGGTCTCGTTAA..................................................................................................................................................................................................	22	1	3.00	3.00	0.00	0.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACTCTCATCCATT.........................	23	1	3.00	0.00	1.00	1.00	1.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCGTT.........................	22	1	3.00	2.00	1.00	0.00	0.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATTG........................	23	1	3.00	3.00	0.00	0.00	0.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAGTCCA...........................	21	1	3.00	3.00	0.00	0.00	0.00

droGri2

ATGTGCGAATCTAAGCGATCGTTATCGCGTTTGGAATGGTCTCGTTAGCTAACCAAAGCGC------TCG----------------------------------------------TT--------------------------------------------------------------ACAGCGTAGTGTAGTTTCGAGACCACTCTAATCCATTCCATCGCTTTTCATTGTATGCAAA-	Size	Hit Count	Total Norm	V109 Male body
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATT.........................	23	1	724.00	724.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATT.........................	22	1	699.00	699.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCAT..........................	22	1	145.00	145.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCAT..........................	21	1	34.00	34.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCA...........................	21	1	23.00	23.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCATTT........................	23	1	20.00	20.00
..........................GCGTTTGGAATGGTCTCGTTAGC.................................................................................................................................................................................................	23	1	15.00	15.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATTT........................	24	1	14.00	14.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATC.........................	23	1	9.00	9.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAACCCATT.........................	23	1	9.00	9.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATACATT.........................	22	1	6.00	6.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAAACCATT.........................	23	1	6.00	6.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCCATA.........................	23	1	6.00	6.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATGCATT.........................	22	1	6.00	6.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATTCATT.........................	22	1	5.00	5.00
...................................................................................................................................................................................................TTCGAGACCACTCTAATCCCTT.........................	22	1	4.00	4.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAACCCAT..........................	22	1	4.00	4.00
..................................................................................................................................................................................................CTTCGAGACCACTCTAATCCATT.........................	23	1	4.00	4.00
..........................GCGTTTGGAATGGTCTCGTTAG..................................................................................................................................................................................................	22	1	4.00	4.00
..................................................................................................................................................................................................TTCCGAGACCACTCTAATCCATT.........................	23	1	4.00	4.00
..........................GCGTTTGGAATGGTCTCGTTAGCT................................................................................................................................................................................................	24	1	3.00	3.00
..................................................................................................................................................................................................TTTCGAAACCACTCTAATCCATT.........................	23	1	3.00	3.00
...................................................................................................................................................................................................TTCGACACCACTCTAATCCATT.........................	22	1	3.00	3.00
...................................................................................................................................................................................................TTAGAGACCACTCTAATCCATT.........................	22	1	3.00	3.00
...................................................................................................................................................................................................TTCGAGCCCACTCTAATCCATT.........................	22	1	3.00	3.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAAGCCATT.........................	23	1	3.00	3.00
..................................................................................................................................................................................................TTTCGAGACCACTCTAATCC............................	20	1	3.00	3.00

Generated: 04/20/2012 at 05:20:07 EDT

dme-mir-956

chr3L:11766831-11766978 -

Known_mirbase

intergenic

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Legend

Re-alignment after removal of non-confident orthologs

20-way Secondary Structure

Small RNA-seq read pileup