Possible Orthologs for dme-mir-955

droSim1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
5	chr3L:2834561-2834687 +	94.55	TAAGGAACACTTTTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGTGTTTTGCCTAATCGCATTCAATTTCTGAACGGTAGAGATGGTACGCTTAGAAACAACCTAAAACAATT TAAAGAACTCTTTTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGTGTTTTGCCTAATCGCATTCAATTTCTGCACGGTAGAGATGGTACGCTTAGAAACAACCTAAAGAAATT Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo ................................CATCGTGCAGAGGTTTGAGTGTC........................................................................ 23 1 836.00 395.00 5.00 0.00 436.00 .................................ATCGTGCAGAGGTTTGAGTGTC........................................................................ 22 1 154.00 29.00 1.00 0.00 124.00 ................................CATCGTGCAGAGGTTTGAGTGT......................................................................... 22 1 127.00 84.00 2.00 0.00 41.00 .........................................................................CATTCAATTTCTGCACGGTAGT................................ 22 1 95.00 4.00 5.00 1.00 85.00 ................................CATCGTGCAGAGGTTTGAGTG.......................................................................... 21 1 76.00 60.00 3.00 0.00 13.00 ..............TGGCCAGCTAATCAACTC............................................................................................... 18 1 64.00 0.00 0.00 0.00 64.00 .........................................................................CATTCAATTTCTGCACGG.................................... 18 1 50.00 0.00 0.00 0.00 50.00 .............TTGGCCAGCTAATCAACTC............................................................................................... 19 1 33.00 1.00 0.00 0.00 32.00 .........................................................................CATTCAATTTCTGCACGGTAGA................................ 22 1 31.00 17.00 0.00 0.00 14.00 ..............TGGCCAGCTAATCAACTCC.............................................................................................. 19 1 16.00 8.00 0.00 0.00 8.00 .................................ATCGTGCAGAGGTTTGAGTGT......................................................................... 21 1 14.00 4.00 2.00 0.00 8.00 .........................................................................CATTCAATTTCTGCACGGTAG................................. 21 1 14.00 0.00 0.00 0.00 14.00 ................................CATCGTGCAGAGGTTTGAGTGG......................................................................... 22 1 13.00 0.00 2.00 0.00 11.00 .................................ATCGTGCAGAGGTTTGAGTGTCC....................................................................... 23 1 12.00 6.00 1.00 0.00 5.00 ............TTTGGCCAGCTAATCAACTC............................................................................................... 20 1 12.00 0.00 0.00 0.00 12.00 ................................CATCGTGCAGAGGTTTGAG............................................................................ 19 1 8.00 0.00 2.00 0.00 6.00 .........................................................................CATTCAATTTCTGCACGGTAGG................................ 22 1 8.00 1.00 1.00 0.00 6.00 ................................CATCGTGCAGCGGTTTGAGTGTC........................................................................ 23 1 6.00 6.00 0.00 0.00 0.00 ...........TTTTGGCCAGCTAATCAACTC............................................................................................... 21 1 6.00 0.00 0.00 0.00 6.00 .................................ATCGTGCAGAGGTTTGAGTGTCCTG..................................................................... 25 1 6.00 2.00 0.00 0.00 4.00 ................................CATCGTGCAGAGGTTTGAGGGTC........................................................................ 23 1 5.00 1.00 0.00 0.00 4.00 ................................CATCGTGCAGATGTTTGAGTGTC........................................................................ 23 1 5.00 0.00 0.00 0.00 5.00 ................................CATCGTGCAGAGGTTTGAGTGTCT....................................................................... 24 1 5.00 2.00 0.00 0.00 3.00 ................................CATCGTGCAGAGGTTTGAGCGTC........................................................................ 23 1 5.00 1.00 0.00 0.00 4.00 .............TTGGCCAGCTAATCAACTCC.............................................................................................. 20 1 5.00 0.00 0.00 0.00 5.00 .................................ATCGTGCAGAGGTTTGAGTGTCT....................................................................... 23 1 5.00 1.00 0.00 0.00 4.00 ................................CATCTTGCAGAGGTTTGAGTGTC........................................................................ 23 1 4.00 0.00 0.00 0.00 4.00 .........................................................................CATTCAATTTCTGCACGGTAGC................................ 22 1 4.00 0.00 0.00 0.00 4.00 ................................CATCGTGCATAGGTTTGAGTGTC........................................................................ 23 1 3.00 0.00 0.00 0.00 3.00 .................................ATCGTGCAGAGGTTTGAGTGTCCT...................................................................... 24 1 3.00 1.00 0.00 0.00 2.00 ................................CATCGTGCAGAGGTTTGAGT........................................................................... 20 1 3.00 3.00 0.00 0.00 0.00 ................................CATCGTGCAGAGGTTTGAGTGC......................................................................... 22 1 3.00 0.00 0.00 0.00 3.00 ................................CATCGTGCAGAGGTTTGAGTGAC........................................................................ 23 1 3.00 0.00 0.00 0.00 3.00

droSec1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
5	super_2:3291343-3291466 +	91.39	TAAGGAACACTTTTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGTGTTTTGCCTAATCGCATTCAATTTCTGAACGGTAGAGATGGTACGCTTAGAAACAACCTAAAACAATT TAATAAACACTTTTTGGTCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGTGTTTTGCCTAATCGCATTCAATTTCTGCAG---AGAGATGGTACGCTTAGAAACAACCTACAAAAATT Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head ...............................................................................CTTTCxGCAG---AGAGATGGT.......................... 18 1 4.00 0.00 3.00 1.00 ...............................................................................CTTTCxGCAG---AGAGATGGTA......................... 19 1 2.00 0.00 2.00 0.00 .....................................CGCAGCGGTTTGAGTGTC........................................................................ 18 1 1.00 0.00 1.00 0.00

droYak2 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
3	chr3L:3844747-3844864 +	81.76	TAAGGAACACTTTTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGTGTTTTGCCTAATCGCATTCAATTTCTGAACGGTAGAGATGGTACGCTTAGAAACAACCTAAAACAATT TAAAGTAAA---------CAGCTAATCAACTCCATCGTGCAGAAGTTTGAGTGTCCTGTGTGTTGCCTAATCGCATTCAATTTCTGAACGGTAGAGATGGTACGCTTAGAAACAACCTAAAATGAGT Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head ................................CATCGTGCAGAAGTTTGAGTGTC........................................................................ 23 1 293.00 206.00 0.00 15.00 4.00 68.00 ................................CATCGTGCAGAAGTTTGAGTGT......................................................................... 22 1 96.00 16.00 8.00 33.00 12.00 27.00 ................................CATCGTGCAGAAGTTTGAGTGTCT....................................................................... 24 1 16.00 0.00 0.00 3.00 1.00 12.00 ................................CATCGTGCAGAAGTTTGAGTG.......................................................................... 21 1 7.00 1.00 0.00 5.00 1.00 0.00 ................................CATCGTGCAGAAGTTTGAGTGC......................................................................... 22 1 6.00 0.00 0.00 2.00 0.00 4.00 .................................ATCGTGCAGAAGTTTGAGTGTC........................................................................ 22 1 5.00 4.00 0.00 0.00 0.00 1.00 .................................ATCGTGCAGAAGTTTGAGTGTCT....................................................................... 23 1 3.00 0.00 0.00 0.00 0.00 3.00 ................................CATCGTGCAGCAGTTTGAGTGTC........................................................................ 23 1 3.00 3.00 0.00 0.00 0.00 0.00 ................................CATCGTGCAGAAGTTTGAGTGTCC....................................................................... 24 1 2.00 0.00 0.00 1.00 0.00 1.00 .....TAAA---------CAGCTAAGCGACTCCAT............................................................................................ 21 1 2.00 0.00 0.00 2.00 0.00 0.00 ................................CATCGTGCAGAAGTTTGAGTGTT........................................................................ 23 1 2.00 0.00 0.00 2.00 0.00 0.00 .........................................................................CATTCAATTTCTGAACGGTAGA................................ 22 1 2.00 2.00 0.00 0.00 0.00 0.00 ................................CATCGCGCAGAAGTTTGAGTGTC........................................................................ 23 1 2.00 2.00 0.00 0.00 0.00 0.00 ................................CATCGTGCAGAAGTTTGAGT........................................................................... 20 1 2.00 0.00 0.00 2.00 0.00 0.00 ................................CATCGTGTAGAAGTTTGAGTGTC........................................................................ 23 1 2.00 0.00 0.00 0.00 0.00 2.00 ................................CATCGTGCAGAAGTTTGAGTGAC........................................................................ 23 1 2.00 0.00 0.00 0.00 0.00 2.00 ................................CATCGTGCAGACGTTTGAGTGT......................................................................... 22 1 2.00 0.00 0.00 0.00 1.00 1.00 ..........................................................................ATTCAATTTCTGAACGGTAGAGT.............................. 23 1 2.00 0.00 0.00 0.00 0.00 2.00 ................................CATCGTGCAGAAGTTTGAGTGG......................................................................... 22 1 2.00 0.00 0.00 0.00 0.00 2.00 ................................CATCGGGCAGAAGTTTGAGTGTC........................................................................ 23 1 2.00 2.00 0.00 0.00 0.00 0.00 ................................CATCGTGCCGAAGTTTGAGTGTC........................................................................ 23 1 2.00 0.00 0.00 0.00 0.00 2.00 ................................CATCGTGCAGAAGTTTGAGTGTG........................................................................ 23 1 1.00 1.00 0.00 0.00 0.00 0.00 ................................CATCGTGCAGAATTTTGAGTGT......................................................................... 22 1 1.00 0.00 0.00 0.00 0.00 1.00 ................................CATCGTGCAGAAGTTTGAGAGTC........................................................................ 23 1 1.00 1.00 0.00 0.00 0.00 0.00 ................................CATCGTGCAGAAGCTTGAGTGT......................................................................... 22 1 1.00 0.00 0.00 0.00 0.00 1.00 ................................CATCGGGCAGAAGTTTGAGCG.......................................................................... 21 1 1.00 0.00 0.00 0.00 1.00 0.00 ................................CATCGTGCAGAAGTTTAAGTGTA........................................................................ 23 1 1.00 1.00 0.00 0.00 0.00 0.00 .....TAAA---------CAGCTAATCAACTCC.............................................................................................. 19 1 1.00 1.00 0.00 0.00 0.00 0.00 ................................CATCGTGCAGAAGTTTGTGTGTC........................................................................ 23 1 1.00 1.00 0.00 0.00 0.00 0.00 ................................CAACGTGCAGAAGTTTCAGTGTC........................................................................ 23 1 1.00 1.00 0.00 0.00 0.00 0.00 ................................CATCGTGCAGAATTTTGAGTGTC........................................................................ 23 1 1.00 0.00 0.00 0.00 0.00 1.00 ................................CATCGTGCAGAAGTTTCAGTGAC........................................................................ 23 1 1.00 0.00 0.00 0.00 0.00 1.00 .................................ATCGTGCAGAAGTTTGAGTGTCC....................................................................... 23 1 1.00 1.00 0.00 0.00 0.00 0.00 ......AAA---------CAGCTAAGCGACTCCATC........................................................................................... 21 1 1.00 0.00 0.00 1.00 0.00 0.00 ................................CATCGTGCCGACGTTTGAGTGT......................................................................... 22 1 1.00 0.00 0.00 0.00 1.00 0.00 ................................CATCGTGCAGAAGTTTGAGTGTCA....................................................................... 24 1 1.00 1.00 0.00 0.00 0.00 0.00 ......AAA---------CAGCTAAACGACTCCATC........................................................................................... 21 1 1.00 0.00 0.00 0.00 0.00 1.00 ...............................CCATCGTGCAGAAGTTTGAGTGT......................................................................... 23 1 1.00 1.00 0.00 0.00 0.00 0.00 ................................CATCGTGCAGAAGTTTCAG............................................................................ 19 1 1.00 0.00 0.00 1.00 0.00 0.00 ................................CATCGTGCAGAAGTTTGAGTGTCTT...................................................................... 25 1 1.00 0.00 0.00 0.00 1.00 0.00 ................................CATCGTGCAGAAGTTTGAGTT.......................................................................... 21 1 1.00 0.00 0.00 1.00 0.00 0.00 ................................CATCGTGCAGAAGTTTGAGA........................................................................... 20 1 1.00 0.00 0.00 0.00 1.00 0.00 ................................CATCGTGCAGAATCTTGAGTGT......................................................................... 22 1 1.00 1.00 0.00 0.00 0.00 0.00 ................................CATCGAGCAGACGTTTGAGTGTC........................................................................ 23 1 1.00 1.00 0.00 0.00 0.00 0.00 ................................CATCGTGCAGAAGGTTGAGTGTC........................................................................ 23 1 1.00 1.00 0.00 0.00 0.00 0.00 ..................................TCGTGCAGAAGTTTGAGTGTCCTG..................................................................... 24 1 1.00 1.00 0.00 0.00 0.00 0.00 .................................ATCGTGCAGAAGTTTGAGTGTCCTG..................................................................... 25 1 1.00 1.00 0.00 0.00 0.00 0.00 ................................CATCGTGCAGTAGTTTGAGTGTC........................................................................ 23 1 1.00 1.00 0.00 0.00 0.00 0.00 ................................CATCGTGCAGAAGTTTGAGTGA......................................................................... 22 1 1.00 0.00 0.00 1.00 0.00 0.00 ................................CATCGTGCAGAAGTTTGGGTG.......................................................................... 21 1 1.00 0.00 0.00 1.00 0.00 0.00 ................................CATCGTGCAGCTGTTTGAGTGTC........................................................................ 23 1 1.00 1.00 0.00 0.00 0.00 0.00 ................................CATCGTGCAGAAGTTTGAGTATC........................................................................ 23 1 1.00 1.00 0.00 0.00 0.00 0.00 ................................CATCTTGCAGAAGTTTGAGTGAC........................................................................ 23 1 1.00 0.00 0.00 0.00 0.00 1.00 .................................ATTGTGCAGAAGxTTGAGTGT......................................................................... 20 1 1.00 0.00 0.00 1.00 0.00 0.00 ......AAA---------CAGCTAAGCGACTCCAT............................................................................................ 20 1 1.00 0.00 0.00 1.00 0.00 0.00 ................................CATCGTGCAGAAGCTTGAGTGTC........................................................................ 23 1 1.00 1.00 0.00 0.00 0.00 0.00 ................................CATCGTGCAGAGGTTTGAGTGTC........................................................................ 23 1 1.00 1.00 0.00 0.00 0.00 0.00

droEre2 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
4	scaffold_4784:5981989-5982116 +	91.5	TAAGGAA--CACTTTTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGTGTTTTGCCTAATCGCATTCAATTTCTGAACGGTAGAGATGGTACGCTTAGAAACAACCTAAAACAATT -AAGGAATACACTT-TTGTCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCTTGTGTGTTGCCTAATCGCATTCAATTTCTGAACGGTAGAGATGGTACGCTTAGAAACAACCTAAAGCAAGT Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head ..................................CATCGTGCAGAGGTTTGAGTGT......................................................................... 22 1 289.00 57.00 18.00 0.00 214.00 ..................................CATCGTGCAGAGGTTTGAGTGTC........................................................................ 23 1 260.00 228.00 1.00 0.00 31.00 ..................................CATCGTGCAGAGGTTTGAGTG.......................................................................... 21 1 201.00 41.00 9.00 0.00 151.00 ..................................CATCGTGCAGAGGTTTGAGTGTCT....................................................................... 24 1 27.00 6.00 1.00 0.00 20.00 ..................................CATCGTGCAGAGGTTTGAGT........................................................................... 20 1 16.00 2.00 1.00 0.00 13.00 ..................................CATCGTGCAGAGGTTTTAGTGTC........................................................................ 23 1 9.00 9.00 0.00 0.00 0.00 ..................................CATCGTGCACAGGTTTGAGTGTT........................................................................ 23 1 5.00 5.00 0.00 0.00 0.00 ...................................ATCGTGCAGAGGTTTGAGTGTCT....................................................................... 23 1 5.00 2.00 0.00 0.00 3.00 ..................................CATCGTGCATAGGTTTGAGTGTC........................................................................ 23 1 4.00 4.00 0.00 0.00 0.00 ..................................CATCGTGCAGCGGTTTGAGTGTC........................................................................ 23 1 4.00 3.00 0.00 0.00 1.00 ..................................AATCGTGCAGAGGTTTGAGTGT......................................................................... 22 1 4.00 0.00 0.00 0.00 4.00 ..................................CATCGTGCAGATGTTTGAGTGT......................................................................... 22 1 4.00 0.00 0.00 0.00 4.00 ...................................ATCGTGCAGAGGTTTGAGTGT......................................................................... 21 1 3.00 0.00 0.00 0.00 3.00 ..................................CATCGTGCAGAGGTTTGATTGT......................................................................... 22 1 3.00 1.00 0.00 0.00 2.00 ..................................CATCGTTCAGAGGTTTGAGTGT......................................................................... 22 1 3.00 0.00 0.00 0.00 3.00

droFic1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
4	scf7180000454105:1620302-1620432 +	72.84	TAAGGAACACTTTTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGTGTTTTGCCTAA-TCGCATTCAATTTCTGAACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAACAAT--T TGAAGCAACCTTTTCAGCTAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGTGTCTTGTCAAATTCGCATTCAATCTCTGAACGGTAGAGATGGTGGAGCTATAGATCAGCCTAAATATATACA Size Hit Count Total Norm

droEug1 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
5	scf7180000409466:1024712-1024826 +	73.97	TAAGGAACACTTTTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGTGTTTTGCCTAATCGCATTCAATTTCTGAACGGTAGAGATGGTACGCTTAGAAACAACCTAAAACAATT T-----------TTTTGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGTGACTTGCCAAATCGCATTCAATCTCTGAACGGTAGAGATGGTCAGCTTAAAAGCAACCTAAA--GACT Size Hit Count Total Norm
6	scf7180000409672:2452646-2452750 -	35.81	TAAGGAACACTTTTTGGCCA-GCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGTGTTTTGCCTAATCGCATTCAATTTCTGAACGGTAGAGATGGTACGCTTAGAAA-CAACCTAAAACAATT TCAAAAATATTTTCCGACACTATTGGTAACCTTGCTAGTGAAG---------CGCCATCTACTTCACATAACTGAA---------------ACATAGATGACGCCAACACAAAGAGCTTTCTCATAACT Size Hit Count Total Norm

droBia1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
2	scf7180000302428:2658402-2658538 +	69.93	TAAGGAACACTTT----TTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGTGTTTTGCCTAATCGCATTCAATTTCTGAACGGTAGAGATGGTACGCTTAGAAACAACCTAAAACAATT------ CAGGATTTGCTTTTCGTTTGGTCAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCCTGTATCTTGCCAAATCGCATTCAATCTCTGAACGGTAGAGATGGTCTGCTTCAAAGCAACATAAAACATTAAAAACA Size Hit Count Total Norm

droTak1 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
2	scf7180000415378:64765-64932 -	48.72	TAAGGAACACTTTTT-----GGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGTGTTTTGCCTAATCGCATTCAATTTCTGAACGGTAGAGATGGTACGCTTAGAAACAACCTAAA------------------------------------ACAATT TACAGGGTATTTTTTGTTTCGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGTGTCTCGACAAATCGCATTCAATCTCTGAACGGTAGAGATGGTATGCTCAAAAGCAACATAAATAAATTCCTAATTCCTAAAAATTCCTAAAAAAAATTGCAATT Size Hit Count Total Norm
1	scf7180000415272:382990-383102 +	40.02	TAAGGAACACTTTTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAG----TGTCCTGTGTTTTGCCTAATCGCATTCAATTTCTGAACGGTAGAGATGGTACGCTTAGAAACAACCTAAAACAATT TAACTAACCTTATTTATAA-----------TTTTTAATAAATAGTTTTTAGGTCCTTTTCTATTTTGTAAATATTTTTACTTCTGTTCTAAAATGTAT-------ATTTTTAAAGAAATATTGCAACATGT Size Hit Count Total Norm

droEle1 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
2	scf7180000491249:1960492-1960621 -	78.4	TAAGGAA--CACTTTTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGTGTTTTGCCTAATCGCATTCAATTTCTGAACGGTAGAGATGGTACGCTTAGAAACAACCTAA-AACAATT TGTGGAAGGTATTTGTCGGCCAGCTTTTCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGTGTCTTGCCAATTCGCATTCAATCTCTGAACGATAGAGATGGTCAGCTTAAAAGCAACATAAGATCAAAA Size Hit Count Total Norm
1	scf7180000491249:1960266-1960387 -	43.96	TAAGGAACACTTTTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGTGTTTTGCCTAA---TCGCATTCAATTTCTGAACGGTAGAGATGGTAC-GCTTAGAAACAACCTAAAACAATT TAGGGCAAAATTTTTGA-AATATATTAATTTA----TTTCCCTTTTTTTATCTTTTTGTACTTTGAAAGCTTATAGTT-TCAA--TCTTAACTATCAATATTATCCCTATTTGTTGC-ATATATCGAAATT Size Hit Count Total Norm

droRho1 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
2	scf7180000769770:13927-14066 -	67.6	TAAGGAACACTTTTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGTGTTTTGCCTAATCGCATTCAATTTCTGAACGGTAGAGATGGTACGCTTAGAAACAACCTAAAACAATT-------------- ATATGAAGACTTTCTGGCTAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGTGTCTTGCCAATCCGCATTCAATCTTTGAACGATAGATATGGTCAGCTTAAATGCAACCTAA-ACATCTATTCGAAATTCAGA Size Hit Count Total Norm
1	scf7180000757703:623-782 -	51.27	TAAGGAACACTTTTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGTGTTTTGCCTAATCGCATTCAATTTCTGAACGGTAGAGATGGTACGCTTAGAAACAACCTAAA---------------------------------ACAATT TATTTAAAAATTTCTGGCTAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGTGTCTTGCCAATCCGCATTCAATCTTTGAACGATAGATATGGTCAGCTTAAATGCAACCTAAACATCTATTCGAAATTTAGATTACCTAAATGACAAAAAAT Size Hit Count Total Norm

droKik1 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000302391:414346-414467 +	79.16	TAAGGAACACTTTTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGTGTTTTGCCTAATCGCATTCAATTTCTGAACGGTAGAGATGGTACGCTTAGAAACAACCTAAAACAATT TTCG-----ACATTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCTTGTGTATTGCCAAATCGCATTCAACCTCTGAACGGTAGAGATGGTGAGCTTTAGAGCAACCTAAATTTATA Size Hit Count Total Norm
2	scf7180000302577:309451-309546 +	34.2	TAAGGAACACTTTTTGGCCAGCTAATCAACTCCATCGTGC-AGAGGTTTGAGTGTCCTGTGTTTTGCCTAATCGCATTCAATTTCTGAACGGTAGAGATGGTACGCTTAGAAACAACCTAAAACAATT TCAG-AACAGTTTTCCGAATTGAAATTAATGCGTTTTTGCCATAGTTATGAAGGATTTTTAATTTGGGTAAACACATTTTGG-------------------------------CTTCCTCAAGCTAGT Size Hit Count Total Norm

droAna3 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scaffold_13337:7606422-7606539 +	69.81	TAAGGAACACTTTTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGTGTTTTGCCTAATCGCATTCAATTTCTGAACGGTAGAGATGGTACGCTTAGAAACAACCTAAAACAATT TGAAGGATGTTTTTTGAGAAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCTAAT-TTTTAACCATTCGCATTCAACCTTTGGACGGTAGAGATGGTCAGTGAGAAAGCAACCTA-------- Size Hit Count Total Norm V105 Male body V106 Head V055 Unknown V039 Embryo ................................CATCGTGCAGAGGTTTGAGTGT......................................................................... 22 1 124.00 62.00 40.00 19.00 3.00 ................................CATCGTGCAGAGGTTTGAGTGTC........................................................................ 23 1 60.00 21.00 18.00 8.00 13.00 ................................CATCGTGCAGAGGTTTGAGTG.......................................................................... 21 1 41.00 21.00 16.00 2.00 2.00 ................................CATCGTGCAGAGGTTTGAGTGTCT....................................................................... 24 1 37.00 16.00 13.00 2.00 6.00 ................................CATCGTGCAGAGGTTTGAGT........................................................................... 20 1 9.00 5.00 1.00 3.00 0.00 .........................................................................CATTCAACCTTTGGACGGTAGA................................ 22 1 7.00 4.00 1.00 1.00 1.00 ................................CATCGTGCAGAGGTTTGAGTGTT........................................................................ 23 1 6.00 3.00 2.00 1.00 0.00 ...........................................................................TTCAACCTTTGGACGGTAGAG............................... 21 1 4.00 4.00 0.00 0.00 0.00 ................................CATCGTGCAGAGGTTTTAGTGTC........................................................................ 23 1 4.00 0.00 2.00 0.00 2.00 ................................CATCGTGCAGAGGTTTGAGTTTC........................................................................ 23 1 3.00 0.00 1.00 0.00 2.00 .................................ATCGTGCAGAGGTTTGAGTGTCT....................................................................... 23 1 3.00 0.00 3.00 0.00 0.00 ................................CATCGTGCAGAGGTTTGAGTT.......................................................................... 21 1 2.00 1.00 0.00 0.00 1.00 ................................CATCGTGCAGAGGTTAGAGTGT......................................................................... 22 1 2.00 2.00 0.00 0.00 0.00 ...............................CCATCGTGCAGAGGTTTGAGTGT......................................................................... 23 1 2.00 1.00 1.00 0.00 0.00 ...........................................................................TTCAACCTTTGGACGGTAGAGT.............................. 22 1 2.00 1.00 0.00 1.00 0.00 ................................CATCGGGCAGAGGTTTGAGTGTC........................................................................ 23 1 2.00 0.00 0.00 1.00 1.00 ................................AATGGTGCAGAGGTTTGAGTGT......................................................................... 22 1 1.00 0.00 0.00 1.00 0.00 ................................CATCGTGCAGAGGTTTGAGCGT......................................................................... 22 1 1.00 1.00 0.00 0.00 0.00 ................................AATCGTGCAGAGGTTTGAGTG.......................................................................... 21 1 1.00 1.00 0.00 0.00 0.00 ...........................................................................TTCAACCTTTGGACGATAGAGA.............................. 22 1 1.00 1.00 0.00 0.00 0.00 ................................CCTCGTGCAGAGGTTTGAGT........................................................................... 20 1 1.00 1.00 0.00 0.00 0.00 ................................CATCGTGCACGGGTTTGAGTG.......................................................................... 21 1 1.00 1.00 0.00 0.00 0.00 ................................CATCTTGCATAGGTTTGAGTGT......................................................................... 22 1 1.00 1.00 0.00 0.00 0.00 ...........................................................................TTCAACCTTTGGACGGTAGA................................ 20 1 1.00 0.00 0.00 1.00 0.00 ................................CATCGTGCATAGGTTTGAGTGTC........................................................................ 23 1 1.00 0.00 1.00 0.00 0.00 ................................CATCGTGCAGCGGTTTGAGTATC........................................................................ 23 1 1.00 1.00 0.00 0.00 0.00 ................................CATCGTGCAGAGGTTTTGGT........................................................................... 20 1 1.00 1.00 0.00 0.00 0.00 ................................GATCGTGCAGAGGTTTGAG............................................................................ 19 1 1.00 1.00 0.00 0.00 0.00 .........................................................................CATTCAACCTTTGTACGATAGA................................ 22 1 1.00 1.00 0.00 0.00 0.00 ................................CATAGTGCAGAGGTTTGAGTGTCT....................................................................... 24 1 1.00 0.00 1.00 0.00 0.00 .......................................................................CGCATTCAACCTTTGGACGGTAG................................. 23 1 1.00 0.00 0.00 0.00 1.00 ................................CATCGTTCAGAGGTTTGCGTG.......................................................................... 21 1 1.00 0.00 0.00 1.00 0.00 ................................CATCGTGCAGAAGTTTGAGTGTCT....................................................................... 24 1 1.00 1.00 0.00 0.00 0.00 ................................CATCGTGCAGAGGTTTAAGTGTC........................................................................ 23 1 1.00 0.00 0.00 0.00 1.00 ................................CATCGCGCAGAGGTTTGAGTGT......................................................................... 22 1 1.00 0.00 0.00 1.00 0.00 ................................CATCGTGCAGAGGCTTGAGTGTCT....................................................................... 24 1 1.00 0.00 0.00 1.00 0.00 ..................................TCGTGCAGAGGTTTGAGTGTCT....................................................................... 22 1 1.00 0.00 1.00 0.00 0.00 ................................CATCGTGCAGAGCTTTGAGTG.......................................................................... 21 1 1.00 1.00 0.00 0.00 0.00 ................................CATTGTGCAGAGGTTTGAGTT.......................................................................... 21 1 1.00 0.00 1.00 0.00 0.00 ................................CATCGTGCAGAGGTTTGAGTA.......................................................................... 21 1 1.00 1.00 0.00 0.00 0.00 ................................CATCGTGCAGTGGTTTGTGTGT......................................................................... 22 1 1.00 0.00 0.00 1.00 0.00 .................................................................................................TGGTAAGTGAGAAAGCAAGC.......... 20 1 1.00 0.00 0.00 1.00 0.00 ................................CATCGTGCAGAGGTTTGAT............................................................................ 19 1 1.00 0.00 1.00 0.00 0.00 ................................CATCGTGCAGAGGTTTGAGTGG......................................................................... 22 1 1.00 1.00 0.00 0.00 0.00 ................................CATCGTGCAGAGGTTTTAGT........................................................................... 20 1 1.00 0.00 0.00 1.00 0.00 ................................CATCGTGCAGAGGTTTGAGTGTCTA...................................................................... 25 1 1.00 0.00 0.00 0.00 1.00 ...........................................................................TTCAACCTTTGGAAGGTAGAG............................... 21 1 1.00 0.00 1.00 0.00 0.00 .........................................................................CATTCAACCTTTGGACGGTGGA................................ 22 1 1.00 0.00 0.00 1.00 0.00 ................................CATCGGGCAGAGGTTTGAGTGT......................................................................... 22 1 1.00 0.00 0.00 1.00 0.00 ................................CATCGTGCAGAGGTTTGAGTGTTT....................................................................... 24 1 1.00 1.00 0.00 0.00 0.00 ................................CATCGTGCAGAGGCTTGAGTGT......................................................................... 22 1 1.00 0.00 0.00 0.00 1.00 ................................CATCGTGCAGCGGTTTGAGTGTC........................................................................ 23 1 1.00 1.00 0.00 0.00 0.00 ...........................................................................TTCAACCTTTGAACGGTAGAGT.............................. 22 1 1.00 1.00 0.00 0.00 0.00 ................................CATCGTGCAGAGGTTTGAGTATC........................................................................ 23 1 1.00 0.00 1.00 0.00 0.00 ................................AATCGTGCAGAGGTTTGAGTGT......................................................................... 22 1 1.00 0.00 1.00 0.00 0.00 ................................CATCGTGCAGAGCTTTGAGTGT......................................................................... 22 1 1.00 1.00 0.00 0.00 0.00 ................................CATCGTGCAGAGATTTGAGTGTCT....................................................................... 24 1 1.00 1.00 0.00 0.00 0.00 .................................ATCGTGCAGAGGTTTGAGTGTCA....................................................................... 23 1 1.00 1.00 0.00 0.00 0.00 ..................................TCGTGCGGAGGTTTGAGTGTCT....................................................................... 22 1 1.00 0.00 0.00 1.00 0.00 ................................CATCGTTCAGAGGTTTGAGTGT......................................................................... 22 1 1.00 1.00 0.00 0.00 0.00 ................................CATCGTGCAGAGGTTTGTGTGTC........................................................................ 23 1 1.00 0.00 0.00 0.00 1.00 ................................CATCGTGCAGAGGTTTGAGTGC......................................................................... 22 1 1.00 0.00 0.00 1.00 0.00 .........................................................................CATTCAACCTTTGGACGGTAG................................. 21 1 1.00 0.00 0.00 1.00 0.00 ................................CATCGTGCAGAGGTTGGAGTGT......................................................................... 22 1 1.00 1.00 0.00 0.00 0.00 ................................CAACGTGCAGAGGTTTGAGCGT......................................................................... 22 1 1.00 0.00 0.00 1.00 0.00 ................................CATCGTGCATAGGTTTTAGTGTC........................................................................ 23 1 1.00 0.00 0.00 0.00 1.00 ..................................TCGTGCAGAGGTTTGAGTGTC........................................................................ 21 1 1.00 0.00 0.00 0.00 1.00 ................................CATCGCGCAGAGGTTTGAGTG.......................................................................... 21 1 1.00 0.00 0.00 1.00 0.00 ................................CATCGTGCAGAGGTTTGAGTTTCT....................................................................... 24 1 1.00 1.00 0.00 0.00 0.00 ................................CATCGTGCAGAGGTTTGAGTCTC........................................................................ 23 1 1.00 1.00 0.00 0.00 0.00 .................................ATCGTGCAGAGGTTTGAGTG.......................................................................... 20 1 1.00 1.00 0.00 0.00 0.00 ................................CATCGTGCATAGGTTTGAGTGT......................................................................... 22 1 1.00 1.00 0.00 0.00 0.00 ................................CATCGTGCAGAGTTTTGAGTGTC........................................................................ 23 1 1.00 0.00 0.00 0.00 1.00 ...........................................................................TTCAACCTTTGGACGGTAGAGA.............................. 22 1 1.00 0.00 1.00 0.00 0.00 ................................CATCGTGCAGAGGTTTGAAGGTC........................................................................ 23 1 1.00 0.00 0.00 0.00 1.00 ................................CATCGTGCAGAGGTTTGAG............................................................................ 19 1 1.00 1.00 0.00 0.00 0.00

droBip1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000395543:273565-273688 +	72.64	TAAGGAACACTTTTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGTGTTTTGCCTAATCGCATTCAATTTCTGAACGGTAGAGATGGTACGCTTAGAAACAACCTAAAACAATT GAAGGCTGTTTTTTTGAGAAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTC-TATTTTTTAACCTTTCGCATTCAACCTTTGGACGGTAGAGATGGTCAGTGAAAAAGCAACCTAAAAAAG-- Size Hit Count Total Norm

dp4 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	chr4_group1:2379981-2380081 +	32.57	TAAGGAACACTTTTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGTGTTTTGCCTAATCGCATTCAATTTCTGAACGGTAGAGATGGTACGCTTAGAAACAACCTAAA--ACAATT AA----------TTTAAAAAAATGAATAAATTCAAATGACAAAAATGTAAATGAATTAAA--------AAATAAATTCAAATGATAAAAAGTAAA----------TGAATAAAAAAATAAAGTAAAATT Size Hit Count Total Norm V112 Male body V043 Embryo V051 Head M022 Male body
3	chrXR_group8:3252997-3253034 -	14.12	TAAGGAACACTTTTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGTGTTTTGCCTAATCGCATTCAATTTCTGAACGGTAGAGATGGTACGCTTAGAAACAACCTAAAACAATT TTGGGG----------------------------TCCTGCAGGGGTTTGAGGGTCCTGTGTCTTG-------------------------------------------------------------- Size Hit Count Total Norm V112 Male body V043 Embryo V051 Head M022 Male body

droPer1 - 0 hit found

droWil1 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scaffold_180698:10215726-10215851 +	64.56	TAAGGAACACTTTTTGGCCA--GCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTG---TGTTTTGCCTAATCGCATTCAATTTCTGAACGGTAGAGATGGTACGCTTAGAAACAACCTAAAACAATT ATTCAAATACTTTTGCGTTAAGGTTGGCTGGCTCCATCGTGCTTAGGTTTGAGTGTCTTCGTTTGTTTTCTCTAATGGCATTCAACCTTGGAGCGATAGAGACGGCCAATCGAGAAACAGCCTAAA------ Size Hit Count Total Norm V117 Male body V118 Embryo V119 Head M020 Head ..................................CATCGTGCTTAGGTTTGAGTGTC........................................................................... 23 1 673.00 2.00 653.00 11.00 7.00 ..................................CATCGTGCTTAGGTTTGAGTGT............................................................................ 22 1 116.00 2.00 68.00 14.00 32.00 ..................................CATCGTGCTTAGGTTTGAGTG............................................................................. 21 1 41.00 1.00 28.00 2.00 10.00 ..................................CATCGTGCTTAGGTTTGAGTGTCT.......................................................................... 24 1 29.00 0.00 10.00 4.00 15.00 ..............................................................................CATTCAACCTTGGAGCGATAGA................................ 22 1 9.00 0.00 9.00 0.00 0.00 ...................................ATCGTGCTTAGGTTTGAGTGTC........................................................................... 22 1 5.00 0.00 5.00 0.00 0.00 ..................................CATCGTGCTTAGGTTTGAGTGTCC.......................................................................... 24 1 4.00 0.00 2.00 0.00 2.00 ..................................CATCGTGCTTAGGTTTGATTGTC........................................................................... 23 1 3.00 0.00 3.00 0.00 0.00 ..................................CATCTTGCTTAGGTTTGAGTGTC........................................................................... 23 1 3.00 0.00 3.00 0.00 0.00 ..................................CATCGTGCTTAGGCTTGAGTGTC........................................................................... 23 1 3.00 0.00 3.00 0.00 0.00 ..................................CATCGTGCTTAGGTTTGAGTGTCA.......................................................................... 24 1 3.00 0.00 2.00 1.00 0.00 ..................................CATCGTGCTTAGGTTTGAGTGC............................................................................ 22 1 3.00 0.00 0.00 0.00 3.00 ..................................CATCGTGCTTATGTTTGAGTGTC........................................................................... 23 1 3.00 0.00 3.00 0.00 0.00 ..................................CATCGTGCTTAGGTTTTAGTGTC........................................................................... 23 1 3.00 0.00 3.00 0.00 0.00 ..................................CATCGTTCTTAGGTTTGAGTGTC........................................................................... 23 1 2.00 0.00 2.00 0.00 0.00 ..................................CATCGTGCTTAGGTTTGAGCGTCT.......................................................................... 24 1 2.00 0.00 1.00 0.00 1.00 ..................................CATCGCGCTTAGGTTTGAGTGTC........................................................................... 23 1 2.00 0.00 2.00 0.00 0.00 ..................................CATCGTGCTTAGGTTTGAGTGG............................................................................ 22 1 2.00 0.00 0.00 0.00 2.00 ...................................ATCGTGCTTAGGTTTGAGTGTCT.......................................................................... 23 1 2.00 0.00 1.00 1.00 0.00 ..................................CATCGTGCTTAGATTTGAGTGTC........................................................................... 23 1 2.00 0.00 2.00 0.00 0.00 ...................................ATCGTGCTTAGGTTTGAGTGT............................................................................ 21 1 2.00 0.00 1.00 1.00 0.00 ..................................CATCGTGCTTAGGTTTGAGTGTCAA......................................................................... 25 1 2.00 0.00 2.00 0.00 0.00 ..................................CATCGTGCTTAGGTTTGAGT.............................................................................. 20 1 2.00 0.00 2.00 0.00 0.00 ......................................GTGCTTAGGTTTGAGTGTC........................................................................... 19 1 2.00 0.00 2.00 0.00 0.00 ..................................CATCGTGCTTAGGTTTGAGTGCC........................................................................... 23 1 2.00 0.00 2.00 0.00 0.00 ..................................CATCGTGCTTAGGTTTGAGAGTC........................................................................... 23 1 2.00 0.00 2.00 0.00 0.00 ..................................CATTGTGCTTAGGTTTGAGTGTC........................................................................... 23 1 2.00 0.00 2.00 0.00 0.00 ..................................CATCGTGCTTAGGTTTGAGTGTCG.......................................................................... 24 1 1.00 0.00 0.00 0.00 1.00 ..................................CATCGTxCTTAGGTTTGAGTGTC........................................................................... 22 1 1.00 0.00 1.00 0.00 0.00 ..................................CATCCTGCTTAGGTTTGAGTGT............................................................................ 22 1 1.00 0.00 0.00 1.00 0.00 ..................................CATAGTGCTTAGGTTTGAGTGTC........................................................................... 23 1 1.00 0.00 1.00 0.00 0.00 ......ATACTTTTGCGxTCAGGTTG.......................................................................................................... 19 1 1.00 0.00 1.00 0.00 0.00 ..................................CATCGTGCTTAGGTTTGAATGTC........................................................................... 23 1 1.00 0.00 1.00 0.00 0.00 ..................................CACCGTGCTTAGGTTTGAGTGT............................................................................ 22 1 1.00 0.00 1.00 0.00 0.00 ..................................CATCGTGCTTGGGTTTGAGTGT............................................................................ 22 1 1.00 0.00 1.00 0.00 0.00 .................................CCATCGTGCTTAGGGTTGAGTG............................................................................. 22 1 1.00 0.00 1.00 0.00 0.00 ..................................CATCGTGCTTAGGCTTGAGTG............................................................................. 21 1 1.00 0.00 1.00 0.00 0.00 ..................................CATCGTGCTTAGGTTTGAGCGTC........................................................................... 23 1 1.00 0.00 1.00 0.00 0.00 ..................................TATCGTGCTTAGGTTTGAGTGTC........................................................................... 23 1 1.00 0.00 1.00 0.00 0.00 .................................CCATCGTGCTTAGGTTTGAGTGTC........................................................................... 24 1 1.00 0.00 1.00 0.00 0.00 ..................................CATCGTGCTTAGGTTTGAGTGTT........................................................................... 23 1 1.00 0.00 1.00 0.00 0.00 ..................................CATGGTGCTTAGGTTTGAGTGTC........................................................................... 23 1 1.00 0.00 1.00 0.00 0.00 ..................................CATCGTGCTTAGGTTTGAG............................................................................... 19 1 1.00 1.00 0.00 0.00 0.00 ..................................CATCGTGCAGAGGTTTGAGTGTC........................................................................... 23 1 1.00 0.00 1.00 0.00 0.00 ...........................................................................TGGCATTCAACCTTGGAGCGATA.................................. 23 1 1.00 0.00 1.00 0.00 0.00 ..................................CATCGTTCTTAGGTTTGAGTGT............................................................................ 22 1 1.00 0.00 1.00 0.00 0.00 ..................................CATCGTGCTTAGGTTTTAGTGT............................................................................ 22 1 1.00 0.00 1.00 0.00 0.00 ..................................CATCGTGCTTACGTTTGAGTGTC........................................................................... 23 1 1.00 0.00 0.00 1.00 0.00 ..................................CATCGTGCTTAGGTTTGAGTCTC........................................................................... 23 1 1.00 0.00 1.00 0.00 0.00 ..................................CATCGTGCTTAGGTTTGAATGT............................................................................ 22 1 1.00 0.00 0.00 1.00 0.00 ..................................CATCGTGCTTAGGCTTGAGTGTCA.......................................................................... 24 1 1.00 0.00 0.00 1.00 0.00 ..................................CATCGTGCCTAGGTTTGAATGTC........................................................................... 23 1 1.00 0.00 0.00 1.00 0.00 ..........................................................................ATGGCATTCAACCTTGGAGCGATAGAA............................... 27 1 1.00 0.00 1.00 0.00 0.00 ..................................CATTGTGCTTAGGTTTGAGTG............................................................................. 21 1 1.00 0.00 1.00 0.00 0.00 ..................................AATCGTGCTTAGGTTTGAGTGT............................................................................ 22 1 1.00 0.00 1.00 0.00 0.00 ..................................CGTCGTGCTTAGGTTTGAGTGT............................................................................ 22 1 1.00 0.00 1.00 0.00 0.00 .................................CCATCGTGCTTAGGTTTGAGTG............................................................................. 22 1 1.00 0.00 1.00 0.00 0.00 ..................................CATCGTGCTTAGGxTTGAGTGTC........................................................................... 22 1 1.00 0.00 1.00 0.00 0.00 ..................................CATCGTGATTAGGTTTGAGTGTC........................................................................... 23 1 1.00 0.00 1.00 0.00 0.00 ..................................CGTCGTGCTTAGGTTTGAGTGTC........................................................................... 23 1 1.00 0.00 1.00 0.00 0.00 ..................................AATCGTGCTTAGGTTTGAGTG............................................................................. 21 1 1.00 0.00 1.00 0.00 0.00 ............................................................................................GCGATAGAxACGGCAAATCG.................... 19 1 1.00 1.00 0.00 0.00 0.00 ..................................CATCGTGCCTAGGTTTGAGTGTC........................................................................... 23 1 1.00 0.00 1.00 0.00 0.00 ..................................CATCGTGCTTAGGTTTGACTGTC........................................................................... 23 1 1.00 0.00 1.00 0.00 0.00 ..................................CATCGTGCAGAGGTTTGAGTGT............................................................................ 22 1 1.00 0.00 1.00 0.00 0.00 ......................................GTGCTTAGGTTTGAGTGT............................................................................ 18 1 1.00 0.00 0.00 1.00 0.00 ..............................................................................CATTCAACCTTGGAGCGATAG................................. 21 1 1.00 0.00 1.00 0.00 0.00
3	scaffold_180745:2570090-2570181 +	31.87	TAAGGAACACTTTTTGGCCAGCTAATCAACT-CCATCGTGCAGAGGTTTGAGTGTCCTGTGTTTTGCCTAATCGCATTCAATTTCTGAACGGTAGAGATGGTACGCTTAGAAACAACCTAAAACAATT TT------ACCTCTTGCTAAGCAAATCAAAAGACTTAAGACACAAACTTGA--------------------CAACAGTCAA---ACAAAAAGTAGAGAC-------ATAAACAGATACTTCAAAAATT Size Hit Count Total Norm V117 Male body V118 Embryo V119 Head M020 Head ........................................................................AAAAGTCAG---ACAAAAAGT................................... 18 1 1.00 0.00 0.00 0.00 1.00 ..........................................................................CAGTCAA---ACGGAAAGTAGA................................ 19 1 1.00 1.00 0.00 0.00 0.00

droVir3 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
3	scaffold_12758:855562-855687 -	70.3	TAAGGAACACTTTTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGTGTTTTGCCTAATCGCATTCAATTTCTGAACGGTAGAGATGGTACGCTTAGAAACAACCTAAAACAATT TATGTATGGATCTCTCATCAGTTAGCTAGCTCCATCGTGCACAGGTTTGAGTGTT-TGAGTTTTTCCTAGTGGCATTCAACCTTTGAACGGTAGAGATGGCCAACTGAAAAGCGACCTAAACTAATA Size Hit Count Total Norm V116 Male body V053 Unknown V047 Embryo M027 Male body M028 Head ................................CATCGTGCACAGGTTTGAGTGTT-....................................................................... 23 1 46.00 1.00 0.00 44.00 1.00 0.00 ................................CATCGTGCACAGGTTTGAGTGT......................................................................... 22 1 23.00 5.00 5.00 13.00 0.00 0.00 .........................................................................CATTCAACCTTTGAACGGTAGA................................ 22 1 2.00 0.00 1.00 1.00 0.00 0.00 ................................CATCGTGCACAGGTTTTAGTGT......................................................................... 22 1 2.00 0.00 0.00 2.00 0.00 0.00 .........................................................................CATTCAACCTCTGAACGGTAGA................................ 22 1 1.00 0.00 0.00 1.00 0.00 0.00 ................................CGTCGTGCACAGGTTTGAGTGTT-....................................................................... 23 1 1.00 0.00 0.00 1.00 0.00 0.00 ................................CATCGTGCACAGGTTTGAGTATT-....................................................................... 23 1 1.00 0.00 0.00 1.00 0.00 0.00 ................................CATCGTGCACAGGTTTGATTGTT-....................................................................... 23 1 1.00 0.00 0.00 1.00 0.00 0.00 ................................CATCGTGCACAGGTTTTAGTGTT-....................................................................... 23 1 1.00 0.00 0.00 1.00 0.00 0.00 ................................CATCGTGCACAGGTTTGAGTGTT-A...................................................................... 24 1 1.00 0.00 0.00 1.00 0.00 0.00 ................................CATCGGGCACAGGTTTGAGGGTT-....................................................................... 23 1 1.00 0.00 0.00 1.00 0.00 0.00 ................................CATCGGGCTCAGGTTTGAGTGT......................................................................... 22 1 1.00 0.00 1.00 0.00 0.00 0.00 ................................CATCGTGCACAGGTTTGAGCGTT-....................................................................... 23 1 1.00 0.00 0.00 1.00 0.00 0.00 ...............................................................................................AGTGGCCAACTGAAAAGCG............. 19 1 1.00 0.00 0.00 0.00 1.00 0.00 ................................CATCGTGCACAGGTTTGAGTGTT-T...................................................................... 24 1 1.00 1.00 0.00 0.00 0.00 0.00 ................................CATCGTGAACAGGTTTGAGTGTT-T...................................................................... 24 1 1.00 0.00 0.00 1.00 0.00 0.00 ................................CATCGTGCACAGGTTTGA............................................................................. 18 1 1.00 0.00 0.00 1.00 0.00 0.00 .................................ATCGTGCAGAGGTTTGAGTGTC-....................................................................... 22 1 1.00 0.00 1.00 0.00 0.00 0.00 ................................CATGGTGCACAGGTTTGAGTGTT-....................................................................... 23 1 1.00 0.00 0.00 1.00 0.00 0.00 ....................................GTGCAGAGGTTTGAGTGTC-T...................................................................... 20 1 1.00 0.00 0.00 0.00 1.00 0.00 ................................CAGCGTGCACAGGTTTTAGTGT......................................................................... 22 1 1.00 0.00 0.00 1.00 0.00 0.00 ................................CATCGTGCACCGGTTTGAGTGTT-....................................................................... 23 1 1.00 0.00 0.00 1.00 0.00 0.00 ................................CATCGTGCACAGGTTTGAGTTTT-....................................................................... 23 1 1.00 0.00 0.00 1.00 0.00 0.00 ................................CATCGTGCACAGGTTTGAGTG.......................................................................... 21 1 1.00 1.00 0.00 0.00 0.00 0.00 ................................CATCGTGCCCAGGTTTGAGTGTT-....................................................................... 23 1 1.00 0.00 0.00 1.00 0.00 0.00 ................................CATCGTGCACAGGTCTGAGTGTT-....................................................................... 23 1 1.00 0.00 0.00 1.00 0.00 0.00
4	scaffold_12963:5396312-5396453 -	37.64	TAAGGAACACTTTTTGGCC------------AGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCC------------------TGTGTTTTGCCTAATCGCATTCAATTTCTGAACGGTAGAGATGGTACGCTTAGAAACAACCTAAAACAATT AAAGGAATACTTGTAG-CTAGACAGGGAGAGAGGTAATT--GTTTGTGGCGCTGAAGATTAAATACCCTTTCTGATATTAGAGTTCAGTACCCTGCCAGACTTTTT-----------TTAGCACAAATTAAATCTTTTGCACTCATGTAATATA-TA Size Hit Count Total Norm V116 Male body V053 Unknown V047 Embryo M027 Male body M028 Head .................................................AGCCGAAGATTAAATACCCTT....................................................................................... 21 1 1.00 1.00 0.00 0.00 0.00 0.00

droMoj3 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scaffold_6680:1909563-1909732 -	38.66	TAAGGAACACTTTTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGTGTTTTGCCTAATCGCATTCAATTTCTGAACGGTAGAGATGGTACGCTTAGAAACAACCTA------------------------------------------------AAACAATT TCAGGTATCCAATATGG---GTTAGCGAGCTCCATCGTGCACAGGTTTGAGTGTT-TGTGTTT-GGCTAGTCGCATTCAGCCTTTGAACGGTAGAGATGGCCAACTGAAAAGCGACCTAACTGAAAGCGAATCAAGGGAACTAGGCCAATAGGCGAGAATCATATAGAAATAGTT Size Hit Count Total Norm V110 Male body V056 Unknown V049 Head V041 Embryo ................................CATCGTGCACAGGTTTGAGTGTT-....................................................................................................................... 23 1 200.00 22.00 2.00 0.00 176.00 ................................CATCGTGCACAGGTTTGAGTGT......................................................................................................................... 22 1 65.00 37.00 12.00 5.00 11.00 .........................................................................CATTCAGCCTTTGAACGGTAGA................................................................................ 22 1 18.00 4.00 0.00 0.00 14.00 ................................CATCGTGCACAGGTTTGAGTGTT-T...................................................................................................................... 24 1 12.00 6.00 3.00 1.00 2.00 ................................CATCGTGCACAGGTTTGAGT........................................................................................................................... 20 1 2.00 1.00 0.00 0.00 1.00 ................................CATCGTGCAGAGGTTTGAGTGT......................................................................................................................... 22 1 2.00 0.00 0.00 0.00 2.00 ............................................GTTTGAATGTG-TGTGTTT-GG............................................................................................................. 20 1 1.00 1.00 0.00 0.00 0.00 ................................CATCGTGCACAGGTTTTAGTG.......................................................................................................................... 21 1 1.00 0.00 1.00 0.00 0.00 ................................CATCGGGCACAGGTTTGGGTGTT-T...................................................................................................................... 24 1 1.00 0.00 1.00 0.00 0.00 ................................CATCGTGCACAGGTTTGAGTG.......................................................................................................................... 21 1 1.00 0.00 0.00 0.00 1.00 ................................CATCGTGCACAGGTTTGCGTGT......................................................................................................................... 22 1 1.00 0.00 0.00 1.00 0.00 ................................CATCGTGCACAGGTTTGAGTGTT-TGTT................................................................................................................... 27 1 1.00 0.00 0.00 0.00 1.00 ................................CATCGTGCACAGGTTTGAGTGGT-....................................................................................................................... 23 1 1.00 0.00 0.00 0.00 1.00 ................................CATCGGGCACAGGTTTGAGTGT......................................................................................................................... 22 1 1.00 1.00 0.00 0.00 0.00 ................................CATCGTGCACAGGTTTGTGTGTT-....................................................................................................................... 23 1 1.00 0.00 0.00 0.00 1.00 ................................CATCGTGCACAGGTTTGCGTGTT-....................................................................................................................... 23 1 1.00 0.00 0.00 0.00 1.00 ................................CATCGCGCACAGGTTTGAGGGTT-T...................................................................................................................... 24 1 1.00 0.00 0.00 0.00 1.00 ....................................GTGCACAGGTTTGAGTGTT-....................................................................................................................... 19 1 1.00 0.00 0.00 0.00 1.00 ................................CATCGTGCACAGGTTTGAATGTT-....................................................................................................................... 23 1 1.00 0.00 0.00 0.00 1.00 ................................CATCGTGCACAGGTTTGAG............................................................................................................................ 19 1 1.00 1.00 0.00 0.00 0.00 .........CAATATGG---GTTAGCGAGCTC............................................................................................................................................... 20 1 1.00 0.00 0.00 0.00 1.00 ................................CAGCGTGCACAGGTTTGAGTGTT-....................................................................................................................... 23 1 1.00 0.00 0.00 0.00 1.00 ................................CATCGTGCACAAGTTTGAGTGTT-....................................................................................................................... 23 1 1.00 0.00 0.00 0.00 1.00 ..........AATATGG---GTTAGCGAGCTC............................................................................................................................................... 19 1 1.00 0.00 0.00 0.00 1.00 ................................CATCGGGAACAGGTTTGAGTGTT-....................................................................................................................... 23 1 1.00 0.00 0.00 0.00 1.00 ................................CATCGGGCACAGGTTTGAGTGTT-....................................................................................................................... 23 1 1.00 0.00 0.00 0.00 1.00 ................................CATCGCGCACAGGTTTGAGTGTT-....................................................................................................................... 23 1 1.00 0.00 0.00 0.00 1.00 ................................CATCGTGCACAGGTTTGAGTGTT-TGTG................................................................................................................... 27 1 1.00 0.00 0.00 0.00 1.00 ................................CATCGCGCACAGGTTTGAGTGGT-....................................................................................................................... 23 1 1.00 0.00 0.00 0.00 1.00 ................................CATCGCGCACAGGTTTGAGTGT......................................................................................................................... 22 1 1.00 0.00 1.00 0.00 0.00 ................................CATCGTGCACAGGGTTGAGTGTT-....................................................................................................................... 23 1 1.00 0.00 0.00 0.00 1.00 .........................................................................CATTCAGCCTTCGAACGGTAGA................................................................................ 22 1 1.00 0.00 0.00 0.00 1.00 ................................CATCGTGCACAGGTTTGAGTTTT-....................................................................................................................... 23 1 1.00 0.00 0.00 0.00 1.00 ................................CATCGTGCACAGGTTTGAGTGTT-C...................................................................................................................... 24 1 1.00 0.00 0.00 0.00 1.00 ................................CATCGTCCACAGGTTTGAGTGTT-....................................................................................................................... 23 1 1.00 0.00 0.00 0.00 1.00

droGri2 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
2	scaffold_15110:657067-657177 +	58.27	TAAGGAACACTTTTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGTGTTTTGCCTAATCGCATTCAATTTCTGAACGGTAGAGATGGTACGCTTAGAAACAACCTAA-AACAATT TAAAG---------------GTTGGCGAACTCCATCGTGCACGGGTTTGAGTGTC-TGAGT-TTGCCAAGTGGCATTCAGCCCCTGGACGCTAGAGATGGCCAACTGAAAAGCAACCTAAAAACAATC Size Hit Count Total Norm V109 Male body ................................CATCGTGCACGGGTTTGAGTG........................................................................... 21 1 44.00 44.00 ................................CATCGTGCACGGGTTTGAGTGT.......................................................................... 22 1 41.00 41.00 ................................CATCGTGCACGGGTTTGAGT............................................................................ 20 1 16.00 16.00 ................................CATCGTGCACGGGTTTGAGTGTC-........................................................................ 23 1 5.00 5.00 ................................CATCGTGCACGGGTTTGAGTGA.......................................................................... 22 1 2.00 2.00 ................................CAACGTGCACGGGTTTGAGT............................................................................ 20 1 2.00 2.00 ................................CATCGTGCACGGGTTTGGGTG........................................................................... 21 1 1.00 1.00 ................................CATCGTGCATGGGTTTGAGTG........................................................................... 21 1 1.00 1.00 ................................CATCGTGCACGGGTTTGAGTGTC-A....................................................................... 24 1 1.00 1.00 ................................TATCGTGCACGGGTTTGAGTGT.......................................................................... 22 1 1.00 1.00 .................................ATGGTGCACGGGTTTGAGT............................................................................ 19 1 1.00 1.00 ................................CATCGTGCACGGGTTTGAGTGTC-T....................................................................... 24 1 1.00 1.00 ................................CATCGTGCGCGGGTTTGAGTG........................................................................... 21 1 1.00 1.00 ................................CATCGTGCCCGGGTTTGAGTG........................................................................... 21 1 1.00 1.00 ................................CACCGTGCACGGGTTTGAGTG........................................................................... 21 1 1.00 1.00 ................................CATCGTGCACCGGTTTGAGTGT.......................................................................... 22 1 1.00 1.00 ................................CATCGCGCACGGGTTTGAGTG........................................................................... 21 1 1.00 1.00 .................................ATCGTGCACGGGTTTGAGTG........................................................................... 20 1 1.00 1.00 .................................ATCGTGCACAGGxTTGAGTGTC-........................................................................ 21 1 1.00 1.00 ................................CATCGTGCACGGGTTTGCGTGT.......................................................................... 22 1 1.00 1.00 ................................CATCGTGCACGGGTTTGAATG........................................................................... 21 1 1.00 1.00 ................................CATCGAGCACGGGTTTGAGT............................................................................ 20 1 1.00 1.00 ................................CATCGTACACGGGTTTGAGTGT.......................................................................... 22 1 1.00 1.00 ................................CATAGTGCACGGGTTTGAGTGT.......................................................................... 22 1 1.00 1.00 .................................ATCGTGCACGGGTTTGAGTGTC-........................................................................ 22 1 1.00 1.00
3	scaffold_15110:657334-657467 +	39.88	TAAGGAACACTTTTTGGCCAGCTAATCAACTC-----CATCGTGCAGAGGTTTGAGTGTCCTG----TGTTTTGCCTAATCGCATTCAATTTCTGAACGGTA-----GAGATGGTACGCTTAGAAACAACCTAAAACAATT AGTTGAATATTATTTGAATATTAGTCAAGTATTTTGTCAATCAGCTGAAGCATTTCAGCTACAAACAGGATTAGTTGAATATTATTTG-------AATATCAGATAAGTATTCGATCGATCGGAGATCGCCAATATTGACA Size Hit Count Total Norm V109 Male body

Generated: 04/20/2012 at 05:34:57 EDT