dme-mir-79- Best orthologs

dme-mir-79	chr2L:16698554-16698650 +	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intron

Legend:

   mature strand at position 16698613-16698634
   star strand at position 16698572-16698593
   mutations
   read mismatches

Notes: "9c, 9b, and 79 lie close to 306. They all have the same missing orthologs. "

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Species	Coordinate	Source	Confidence	Alignment
dm3	chr2L:16698539-16698665 +		1	AT---------GA-GTGCC--------TT-AG-AGTG-AA----------------------GCTGACTTGCCATTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAACTACTTCATAAAGCTAGATTACCAAAGCATTGGCT-TCTGCAG-GTCAA-TCGTCA-G----------AAACA----AT
droSim1	Unknown		1	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec1	super_7:345550-345676 +	LASTZ	1	AT---------GA-GTGCC--------TC-AG-AGTG-TA----------------------GCTGACTTGCCATTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAACTACTTCATAAAGCTAGATTACCAAAGCATTGGCT-TGTGCAG-ATCAA-TCGTCA-G----------AAACA----AA
droYak2	chr2R:4404406-4404531 -	LASTZ	1	AT---------AA-GTGAA--------TTGAG-AGTG-TA----------------------GCTGCCTTGCCATTGCTTTGGCGCTTTAGCTGTATGATAGATTTATACTACTTCATAAAGCTAGATTACCAAAGCATTGGCT-TCTGCAG-ATCAA-TCATCA-G------------ACA----AA
droEre2	scaffold_4845:19768185-19768311 +	LASTZ	1	AT---------AA-GTGAC--------TT-AG-AGTG-CA----------------------GCTGCCTTGCCATTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAACTACTTCATAAAGCTAGATTACCAAAGCATTGGCT-TCTGCAG-ATCAA-TCTTCA-G----------AAAGA----AA
droEug1	scf7180000408961:272475-272601 +	LASTZ	4	AC---------AA-GTGAT--------TA-AA-AGAG-AA----------------------ACTGCTCTGCCGTTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAACTACTTCATAAAGCTAGATTACCAAAGCATTGGCT-TTGGTAG-ATCAA-TCATCA-A----------AAATA----AC
droBia1	scf7180000301468:858148-858274 +	LASTZ	4	CT---------AT-GTTTT--------TG-AA-AAGG-AA----------------------GCTGCCTTGCCGCTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAACTACTTCATAAAGCTAGATTACCAAAGCATTGGCT-TCTGCAG-ATCAA-TCATCA-G----------TTACA----AC
droTak1	scf7180000415914:422792-422916 +	LASTZ	4	AG---------AA-GTGAT--------TT-AA---GG-CA----------------------GCTGCTTTGCCGTTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAACTACTTCATAAAGCTAGATTACCAAAGCATTGGCT-TTGGCAG-ATCAA-TCAACG-A----------ATATA----TC
droEle1	scf7180000490579:645389-645516 -	LASTZ	4	AA---------AA-GTGTT--------TA-AAGAATG-TG----------------------GCTGCTTGACCGTTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAACTACTTCATAAAGCTAGATTACCAAAGCATTGGCT-TTTGCAG-ATCAA-TCATCC-A----------AAATA----AG
droRho1	scf7180000768553:9525-9660 +	LASTZ	4	AT---------AT-GTGAACTAGTTTTTA-AATAAAG-TA----------------------GCTGCCTTGCCGTTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAACTACTTCATAAAGCTAGATTACCAAAGCATTGGCT-TTTGCAG-ATCAA-TCATCA-A----------GTTTA----AC
droFic1	scf7180000454078:624198-624325 +	LASTZ	4	AC---------CA-GTGCT--------AA-AAGAAAT-AA----------------------CCTGCTTTGCCGTTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAACTACTTCATAAAGCTAGATTACCAAAGCATTGGCT-TGTGCAG-ATTAA-CCATCA-A----------ATAGA----CC
droKik1	scf7180000302382:529487-529610 +	LASTZ	4	GT---------TT-----T--------TT-------------------------------GGACTGCTCTTCTGACGCTTTGGCGCTTTAGCTGTATGATAGATTTTTACTACTTCATAAAGCTAGATTACCAAAGCATTGGCGGTCTGCAGGGTAAA-TCATCA-T----------AAATACAAAAT
droAna3	scaffold_12916:15864702-15864823 -	LASTZ	1	TA---------TA-GTGTT--------CT-A-------TA----------------------GCTGCTTAACCGATGCTTTGGCGCTTTAGCTGTATGATAGATTTAAA-TACTTCATAAAGCTAGATTACCAAAGCATTGGCT-TCCGCAG-GCCTG-TCTTCAAG----------GAATA----AA
droBip1	scf7180000396717:103442-103546 -	LASTZ	4	AT-------------------------------------------------------------CTGTTCTACCTGTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAA-TACTTCATAAAGCTAGATTACCAAAGCATGGGTT-TTCGCAG-GTTAA-TCTTCA-T----------TAA--------
dp4	chr4_group3:8443957-8444103 +	LASTZ	1	GA---------AA-GTGTT--------TA-AA-AGTA-CAACAATCTAATCTGTGCTTAAGCCCTGCTCTGCTTCTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAAATACTTCATAAAGCTAGATTACCAAAGCATTGGCT-C-TGTGG-AAACT-TCATCC------------AAACA----AT
droPer1	super_1:9895076-9895222 +	LASTZ	1	GA---------AA-GTGTT--------TA-AA-AGTA-CGACAATCTAATCTGTGCTTAAGCCCTGCTCTGCTTCTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAAATACTTCATAAAGCTAGATTACCAAAGCATTGGCT-C-TGTGG-AAACT-TCATCC------------AAACA----AT
droWil1	scaffold_181061:28846-28963 -	LASTZ	1	GT---------AA-TGGA--------------------TA----------------------ATGGTCTTGCCTATGCTTTGGCGCTTTAGCTGTATGATAGATTTG-ACTACTTCATAAAGCTAGATTACCAAAGCATGGGCT-CTGGCTG-ACTTAATCAACG-C----------AAGTG----TT
droVir3	scaffold_12963:12863019-12863151 -	LASTZ	1	ATAGC------CA-G-GAT--------TA-GA---TGAAC----------------------GCCGCACTGCCGTTGCTTTGGCGCTTTAGCTGTATGATAGATTTGAA-TACTTCATAAAGCTAGATTACCAAAGCATTGGCT-C-TGTGG-CCAGC-TTAGCA-A---AGTTGTGAAACG----AT
droMoj3	scaffold_6500:7202098-7202247 +	LASTZ	1	AGTGTCTTGT-AATGTAAACGTGTTTTTA-AATA--T-TC----------------------GCCCCATTGCCGTTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAA-TACTTCATAAAGCTAGATTACCAAAGCATTGGCT-C-TGTGG--CCAA-ACCCCA-GCGAACTTGTGAAATA----AT
droGri2	scaffold_14978:831072-831198 +	LASTZ	1	ATTT------AAA-GTGCT--------TC-TT-CTTG-GT----------------------GCCACATTGCCGTCGCTTTGGCGCTTTAGCTGTATGATAGATTTGAA-TACTTCATAAAGCTAGATTACCAAAGCATCGGCG-CCTGTGG-CCAG---CTTAA-C----------AAACG----TT

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species	Alignment
dm3	AT---------GA-GTGCC--------TT-AG-AGTG-AA----------------------GCTGACTTGCCATTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAACTACTTCATAAAGCTAGATTACCAAAGCATTGGCT-TCTGCAG-GTCAA-TCGTCA-G----------AAACA----AT
droSim1	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec1	AT---------GA-GTGCC--------TC-AG-AGTG-TA----------------------GCTGACTTGCCATTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAACTACTTCATAAAGCTAGATTACCAAAGCATTGGCT-TGTGCAG-ATCAA-TCGTCA-G----------AAACA----AA
droYak2	AT---------AA-GTGAA--------TTGAG-AGTG-TA----------------------GCTGCCTTGCCATTGCTTTGGCGCTTTAGCTGTATGATAGATTTATACTACTTCATAAAGCTAGATTACCAAAGCATTGGCT-TCTGCAG-ATCAA-TCATCA-G------------ACA----AA
droEre2	AT---------AA-GTGAC--------TT-AG-AGTG-CA----------------------GCTGCCTTGCCATTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAACTACTTCATAAAGCTAGATTACCAAAGCATTGGCT-TCTGCAG-ATCAA-TCTTCA-G----------AAAGA----AA
droEug1	AC---------AA-GTGAT--------TA-AA-AGAG-AA----------------------ACTGCTCTGCCGTTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAACTACTTCATAAAGCTAGATTACCAAAGCATTGGCT-TTGGTAG-ATCAA-TCATCA-A----------AAATA----AC
droBia1	CT---------AT-GTTTT--------TG-AA-AAGG-AA----------------------GCTGCCTTGCCGCTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAACTACTTCATAAAGCTAGATTACCAAAGCATTGGCT-TCTGCAG-ATCAA-TCATCA-G----------TTACA----AC
droTak1	AG---------AA-GTGAT--------TT-AA---GG-CA----------------------GCTGCTTTGCCGTTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAACTACTTCATAAAGCTAGATTACCAAAGCATTGGCT-TTGGCAG-ATCAA-TCAACG-A----------ATATA----TC
droEle1	AA---------AA-GTGTT--------TA-AAGAATG-TG----------------------GCTGCTTGACCGTTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAACTACTTCATAAAGCTAGATTACCAAAGCATTGGCT-TTTGCAG-ATCAA-TCATCC-A----------AAATA----AG
droRho1	AT---------AT-GTGAACTAGTTTTTA-AATAAAG-TA----------------------GCTGCCTTGCCGTTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAACTACTTCATAAAGCTAGATTACCAAAGCATTGGCT-TTTGCAG-ATCAA-TCATCA-A----------GTTTA----AC
droFic1	AC---------CA-GTGCT--------AA-AAGAAAT-AA----------------------CCTGCTTTGCCGTTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAACTACTTCATAAAGCTAGATTACCAAAGCATTGGCT-TGTGCAG-ATTAA-CCATCA-A----------ATAGA----CC
droKik1	GT---------TT-----T--------TT-------------------------------GGACTGCTCTTCTGACGCTTTGGCGCTTTAGCTGTATGATAGATTTTTACTACTTCATAAAGCTAGATTACCAAAGCATTGGCGGTCTGCAGGGTAAA-TCATCA-T----------AAATACAAAAT
droAna3	TA---------TA-GTGTT--------CT-A-------TA----------------------GCTGCTTAACCGATGCTTTGGCGCTTTAGCTGTATGATAGATTTAAA-TACTTCATAAAGCTAGATTACCAAAGCATTGGCT-TCCGCAG-GCCTG-TCTTCAAG----------GAATA----AA
droBip1	AT-------------------------------------------------------------CTGTTCTACCTGTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAA-TACTTCATAAAGCTAGATTACCAAAGCATGGGTT-TTCGCAG-GTTAA-TCTTCA-T----------TAA--------
dp4	GA---------AA-GTGTT--------TA-AA-AGTA-CAACAATCTAATCTGTGCTTAAGCCCTGCTCTGCTTCTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAAATACTTCATAAAGCTAGATTACCAAAGCATTGGCT-C-TGTGG-AAACT-TCATCC------------AAACA----AT
droPer1	GA---------AA-GTGTT--------TA-AA-AGTA-CGACAATCTAATCTGTGCTTAAGCCCTGCTCTGCTTCTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAAATACTTCATAAAGCTAGATTACCAAAGCATTGGCT-C-TGTGG-AAACT-TCATCC------------AAACA----AT
droWil1	GT---------AA-TGGA--------------------TA----------------------ATGGTCTTGCCTATGCTTTGGCGCTTTAGCTGTATGATAGATTTG-ACTACTTCATAAAGCTAGATTACCAAAGCATGGGCT-CTGGCTG-ACTTAATCAACG-C----------AAGTG----TT
droVir3	ATAGC------CA-G-GAT--------TA-GA---TGAAC----------------------GCCGCACTGCCGTTGCTTTGGCGCTTTAGCTGTATGATAGATTTGAA-TACTTCATAAAGCTAGATTACCAAAGCATTGGCT-C-TGTGG-CCAGC-TTAGCA-A---AGTTGTGAAACG----AT
droMoj3	AGTGTCTTGT-AATGTAAACGTGTTTTTA-AATA--T-TC----------------------GCCCCATTGCCGTTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAA-TACTTCATAAAGCTAGATTACCAAAGCATTGGCT-C-TGTGG--CCAA-ACCCCA-GCGAACTTGTGAAATA----AT
droGri2	ATTT------AAA-GTGCT--------TC-TT-CTTG-GT----------------------GCCACATTGCCGTCGCTTTGGCGCTTTAGCTGTATGATAGATTTGAA-TACTTCATAAAGCTAGATTACCAAAGCATCGGCG-CCTGTGG-CCAG---CTTAA-C----------AAACG----TT

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image		None
UNAFold Image		None

Small RNA-seq read pileup

Species

Alignment

droSim1

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

droSec1

AT---------GA-GTGCC--------TC-AG-AGTG-TA----------------------GCTGACTTGCCATTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAACTACTTCATAAAGCTAGATTACCAAAGCATTGGCT-TGTGCAG-ATCAA-TCGTCA-G----------AAACA----AA	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
.....................................................................................................................TAAAGCTAGATTACCAAAGCAT.................................................	22	1	11761.00	3450.00	3525.00	4786.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCAT.................................................	23	1	7334.00	1672.00	1575.00	4087.00
............................................................................GCTTTGGCGCTTTAGCTGTATG..........................................................................................	22	1	372.00	8.00	292.00	72.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCA..................................................	21	1	338.00	53.00	70.00	215.00
......................................................................................................................AAAGCTAGATTACCAAAGCAT.................................................	21	1	250.00	80.00	41.00	129.00
.....................................................................................................................TAAAGCTAGATTACCAAAGC...................................................	20	1	248.00	21.00	24.00	203.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCA..................................................	22	1	214.00	30.00	32.00	152.00
.....................................................................................................................TAAAGCTAGATTACCAAAG....................................................	19	1	211.00	4.00	8.00	199.00
....................................................................................................................ATAAAGCTAGATTACCAAAG....................................................	20	1	127.00	13.00	5.00	109.00
............................................................................GCTTTGGCGCTTTAGCTGTATGA.........................................................................................	23	1	81.00	4.00	72.00	5.00
.....................................................................................................................TAAAGCTAGATTACCAAACCAT.................................................	22	1	61.00	32.00	11.00	18.00
.....................................................................................................................TAAGGCTAGATTACCAAAGCAT.................................................	22	1	59.00	8.00	4.00	47.00
.....................................................................................................................TAAAGCTAGATTACCAAAGTAT.................................................	22	1	56.00	0.00	49.00	7.00
....................................................................................................................ATAAAGCTAGATTACCAAAGC...................................................	21	1	55.00	6.00	6.00	43.00
.....................................................................................................................TAAATCTAGATTACCAAAGCAT.................................................	22	1	50.00	7.00	20.00	23.00
.....................................................................................................................TAAAGCTAGATTACCAAATCAT.................................................	22	1	45.00	20.00	13.00	12.00
.....................................................................................................................TAAACCTAGATTACCAAAGCAT.................................................	22	1	34.00	5.00	12.00	17.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCATT................................................	23	1	34.00	8.00	6.00	20.00
.....................................................................................................................TAAAGCTGGATTACCAAAGCAT.................................................	22	1	31.00	5.00	3.00	23.00
.....................................................................................................................TAAAGCTAGATTACCAAAACAT.................................................	22	1	29.00	20.00	3.00	6.00
.....................................................................................................................TAAAGCTAGATTACTAAAGCAT.................................................	22	1	26.00	3.00	20.00	3.00
....................................................................................................................ATAAAGCTGGATTACCAAAGCAT.................................................	23	1	26.00	2.00	3.00	21.00
......................................................................................................................AAAGCTAGATTACCAAAGCATT................................................	22	1	26.00	4.00	14.00	8.00
.....................................................................................................................TAAAGTTAGATTACCAAAGCAT.................................................	22	1	24.00	2.00	18.00	4.00
....................................................................................................................ATAAAGCTAGATTACCAAAGTAT.................................................	23	1	24.00	4.00	14.00	6.00
.....................................................................................................................TGAAGCTAGATTACCAAAGCAT.................................................	22	1	24.00	2.00	2.00	20.00
.....................................................................................................................TAAAGCTAGATTATCAAAGCAT.................................................	22	1	21.00	2.00	16.00	3.00
....................................................................................................................ATAAATCTAGATTACCAAAGCAT.................................................	23	1	19.00	1.00	2.00	16.00
.....................................................................................................................TAGAGCTAGATTACCAAAGCAT.................................................	22	1	18.00	6.00	5.00	7.00
....................................................................................................................ATAAAGCTAGATTACCAACGCAT.................................................	23	1	18.00	14.00	1.00	3.00
....................................................................................................................ATAAACCTAGATTACCAAAGCAT.................................................	23	1	17.00	2.00	4.00	11.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCAC.................................................	22	1	17.00	2.00	8.00	7.00
....................................................................................................................ATAAAGCTAGATTACCAAGGCAT.................................................	23	1	16.00	11.00	4.00	1.00
......................................................................................................................TAAGCTAGATTACCAAAGCAT.................................................	21	1	16.00	1.00	13.00	2.00
.....................................................................................................................TAAAGCTAGATTACCGAAGCAT.................................................	22	1	16.00	4.00	7.00	5.00
....................................................................................................................ATGAAGCTAGATTACCAAAGCAT.................................................	23	1	16.00	0.00	0.00	16.00
.....................................................................................................................TAAAGATAGATTACCAAAGCAT.................................................	22	1	16.00	3.00	3.00	10.00
....................................................................................................................ATAAGGCTAGATTACCAAAGCAT.................................................	23	1	16.00	4.00	0.00	12.00
....................................................................................................................ACAAAGCTAGATTACCAAAGCAT.................................................	23	1	15.00	1.00	5.00	9.00
.....................................................................................................................TAAAGCTAGATTACCxAAGCAT.................................................	21	1	15.00	1.00	10.00	4.00
.....................................................................................................................TAAAGCTAGATTACCAAAGT...................................................	20	2	6.50	2.00	0.50	4.00
.......................................................................................................................AAGCTAGATTACCAAAGCAT.................................................	20	1	13.00	4.00	6.00	3.00
....................................................................................................................ATAAAGTTAGATTACCAAAGCAT.................................................	23	1	13.00	0.00	12.00	1.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCATA................................................	23	1	13.00	4.00	4.00	5.00
....................................................................................................................ATAAAGCTAGATTACCAAACCAT.................................................	23	1	13.00	2.00	5.00	6.00
.....................................................................................................................TAAAGCTAGATTACCAAAGAAT.................................................	22	1	12.00	2.00	3.00	7.00
.....................................................................................................................TAAAGCCAGATTACCAAAGCAT.................................................	22	1	12.00	4.00	4.00	4.00
......................................................................................................................AAAGCTAGATTACCAAAGCA..................................................	20	1	12.00	2.00	1.00	9.00
.....................................................................................................................TAAAGCTAGATTACCAGAGCAT.................................................	22	1	12.00	5.00	3.00	4.00
.....................................................................................................................TAAAGCTAGATTACCAAGGCAT.................................................	22	1	11.00	1.00	6.00	4.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCATT................................................	24	1	11.00	4.00	1.00	6.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCCT.................................................	22	1	11.00	5.00	2.00	4.00
....................................................................................................................ATAAAGCTAGATTACCAAATCAT.................................................	23	1	11.00	0.00	2.00	9.00
..............................................................................TTTGGCGCTTTAGCTGTATGA.........................................................................................	21	1	11.00	0.00	9.00	2.00
....................................................................................................................ATAAAGCTAGATTACCAATGCAT.................................................	23	1	11.00	7.00	4.00	0.00
....................................................................................................................ATAAAGCTAGATTATCAAAGCAT.................................................	23	1	11.00	0.00	9.00	2.00
....................................................................................................................GTAAAGCTAGATTACCAAAGCAT.................................................	23	1	10.00	2.00	5.00	3.00
....................................................................................................................ATAAAGCTAGATTACTAAAGCAT.................................................	23	1	10.00	1.00	8.00	1.00
............................................................................GCTTTGGCGCTTTAGCTGTAT...........................................................................................	21	1	10.00	0.00	5.00	5.00
................................................................................TGGCGCTTAAGTTGTATG..........................................................................................	18	1	10.00	0.00	0.00	10.00
....................................................................................................................ATAAAGCTAGATTACCxAAGCAT.................................................	22	1	9.00	1.00	6.00	2.00
....................................................................................................................ATAAAGCTAGATTACCAAA.....................................................	19	1	9.00	0.00	1.00	8.00
.....................................................................................................................TAAAGCTAGATTACCACAGCAT.................................................	22	1	9.00	2.00	1.00	6.00
.....................................................................................................................AAAAGCTAGATTACCAAAGCAT.................................................	22	1	9.00	0.00	2.00	7.00
.....................................................................................................................TAAAGCTATATTACCAAAGCAT.................................................	22	1	9.00	2.00	2.00	5.00
.....................................................................................................................TACAGCTAGATTACCAAAGCAT.................................................	22	1	9.00	4.00	3.00	2.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCAA.................................................	22	1	9.00	1.00	5.00	3.00
.....................................................................................................................TAAAGCTAGGTTACCAAAGCAT.................................................	22	1	9.00	2.00	3.00	4.00
.....................................................................................................................CAAAGCTAGATTACCAAAGCAT.................................................	22	1	8.00	3.00	3.00	2.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCGT.................................................	22	1	8.00	0.00	4.00	4.00
.....................................................................................................................TAAAGCTACATTACCAAAGCAT.................................................	22	1	8.00	1.00	1.00	6.00
....................................................................................................................ATAAAGCTAGATTGCCAAAGCAT.................................................	23	1	8.00	2.00	1.00	5.00
.....................................................................................................................ATAAGCTAGATTACCAAAGCAT.................................................	22	1	8.00	0.00	5.00	3.00
.....................................................................................................................TAAAGCTAGACTACCAAAGCAT.................................................	22	1	8.00	4.00	1.00	3.00
..............................................................................TTTGGCGCTTTAGCTGTATG..........................................................................................	20	1	8.00	2.00	2.00	4.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCGT.................................................	23	1	7.00	1.00	1.00	5.00
....................................................................................................................ATAAAGCTAGATTACCAAAACAT.................................................	23	1	7.00	0.00	1.00	6.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCAA.................................................	23	1	7.00	0.00	1.00	6.00
....................................................................................................................ATAAAGCTAGATTACCCAAGCAT.................................................	23	1	7.00	6.00	0.00	1.00
.....................................................................................................................TAGAGCTGGATTACCAAAGCAT.................................................	22	1	6.00	0.00	0.00	6.00
....................................................................................................................ATAAAGCTAGGTTACCAAAGCAT.................................................	23	1	6.00	1.00	3.00	2.00
....................................................................................................................ATAAAGCTAGATTACCGAAGCAT.................................................	23	1	6.00	2.00	1.00	3.00
.....................................................................................................................TAAAGCTAGATTACAAAAGCAT.................................................	22	1	6.00	0.00	3.00	3.00
....................................................................................................................ATAAAGCTAGACTACCAAAGCAT.................................................	23	1	6.00	2.00	1.00	3.00
....................................................................................................................ATAAAACTAGATTACCAAAGCAT.................................................	23	1	6.00	0.00	2.00	4.00
.....................................................................................................................TAAAGCTAGATCACCAAAGCAT.................................................	22	1	6.00	1.00	3.00	2.00
.....................................................................................................................TAAAGCAAGATTACCAAAGCAT.................................................	22	1	6.00	0.00	0.00	6.00
.....................................................................................................................TAACGCTAGATTACCAAAGCAT.................................................	22	1	6.00	4.00	0.00	2.00
....................................................................................................................ATAAAGCTAGATTACCAAAGAAT.................................................	23	1	6.00	0.00	1.00	5.00
....................................................................................................................ATCAAGCTAGATTACCAAAGCAT.................................................	23	1	5.00	3.00	0.00	2.00
....................................................................................................................CTAAAGCTAGATTACCAAAGCAT.................................................	23	1	5.00	2.00	2.00	1.00
......................................................................................................................TAATCTAGATTACCAAAGCAT.................................................	21	1	5.00	0.00	3.00	2.00
....................................................................................................................ATAAAGCTAGATTAACAAAGCAT.................................................	23	1	5.00	0.00	4.00	1.00
.....................................................................................................................TAAGGCTAGATTACCAAAGCA..................................................	21	1	5.00	0.00	0.00	5.00
....................................................................................................................ATAAAGCTACATTACCAAAGCAT.................................................	23	1	5.00	3.00	1.00	1.00
.....................................................................................................................TAAAGCTTGATTACCAAAGCAT.................................................	22	1	5.00	1.00	4.00	0.00
....................................................................................................................ATAGAGCTAGATTACCAAAGCAT.................................................	23	1	5.00	2.00	0.00	3.00
.....................................................................................................................TAAAACTAGATTACCAAAGCAT.................................................	22	1	5.00	0.00	3.00	2.00
....................................................................................................................ATAACGCTAGATTACCAAAGCAT.................................................	23	1	5.00	2.00	0.00	3.00
............................................................................GCTTTGGCGCTTTAGCTGTATGAA........................................................................................	24	1	5.00	1.00	4.00	0.00
....................................................................................................................ATAAAGCTAAATTACCAAAGCAT.................................................	23	1	5.00	0.00	2.00	3.00

droYak2

AT---------AA-GTGAA--------TTGAG-AGTG-TA----------------------GCTGCCTTGCCATTGCTTTGGCGCTTTAGCTGTATGATAGATTTATACTACTTCATAAAGCTAGATTACCAAAGCATTGGCT-TCTGCAG-ATCAA-TCATCA-G------------ACA----AA	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.....................................................................................................................TAAAGCTAGATTACCAAAGCAT.................................................	22	1	5488.00	462.00	752.00	1193.00	3078.00	3.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCAT.................................................	23	1	3469.00	190.00	541.00	480.00	2253.00	5.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCA..................................................	21	1	166.00	11.00	34.00	12.00	108.00	1.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCA..................................................	22	1	115.00	2.00	19.00	4.00	90.00	0.00
......................................................................................................................AAAGCTAGATTACCAAAGCAT.................................................	21	1	106.00	5.00	22.00	17.00	62.00	0.00
............................................................................GCTTTGGCGCTTTAGCTGTATG..........................................................................................	22	1	100.00	76.00	9.00	4.00	11.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGC...................................................	20	1	89.00	8.00	5.00	11.00	45.00	20.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCCT.................................................	23	1	40.00	1.00	7.00	2.00	30.00	0.00
.....................................................................................................................TAAGGCTAGATTACCAAAGCAT.................................................	22	1	39.00	1.00	7.00	4.00	27.00	0.00
.....................................................................................................................TAAAGCTAGATTACCACAGCAT.................................................	22	1	39.00	1.00	3.00	0.00	35.00	0.00
....................................................................................................................ATAAAGCTGGATTACCAAAGCAT.................................................	23	1	39.00	0.00	5.00	1.00	33.00	0.00
....................................................................................................................ATAAAGCTAGATTACCACAGCAT.................................................	23	1	34.00	0.00	2.00	2.00	30.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCCT.................................................	22	1	30.00	0.00	2.00	1.00	27.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAGC...................................................	21	1	26.00	1.00	2.00	2.00	19.00	2.00
....................................................................................................................ATAAAGCTAGATTACCAACGCAT.................................................	23	1	25.00	0.00	2.00	0.00	23.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAACGCAT.................................................	22	1	23.00	1.00	0.00	0.00	22.00	0.00
....................................................................................................................ATAAAGCTAGCTTACCAAAGCAT.................................................	23	1	22.00	1.00	0.00	2.00	19.00	0.00
.....................................................................................................................TAAAGCTAGAGTACCAAAGCAT.................................................	22	1	20.00	1.00	3.00	0.00	16.00	0.00
.....................................................................................................................TAAAGCTAGATTACCCAAGCAT.................................................	22	1	19.00	1.00	6.00	0.00	12.00	0.00
....................................................................................................................ATGAAGCTAGATTACCAAAGCAT.................................................	23	1	17.00	0.00	3.00	0.00	14.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAATCAT.................................................	22	1	17.00	0.00	3.00	0.00	14.00	0.00
............................................................................GCTTTGGCGCTTTAGCTGTATGA.........................................................................................	23	1	17.00	10.00	3.00	0.00	4.00	0.00
.....................................................................................................................TAAAGCTGGATTACCAAAGCAT.................................................	22	1	17.00	0.00	2.00	2.00	13.00	0.00
....................................................................................................................ATAAGGCTAGATTACCAAAGCAT.................................................	23	1	16.00	1.00	1.00	1.00	13.00	0.00
....................................................................................................................AGAAAGCTAGATTACCAAAGCAT.................................................	23	1	16.00	0.00	4.00	0.00	12.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAG....................................................	19	1	15.00	0.00	2.00	0.00	13.00	0.00
.....................................................................................................................TAAAGCTAGATGACCAAAGCAT.................................................	22	1	15.00	0.00	1.00	0.00	14.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCTT.................................................	22	1	14.00	0.00	1.00	0.00	13.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAG....................................................	20	1	14.00	0.00	1.00	2.00	9.00	2.00
....................................................................................................................ATAAAGCTAGATTACCAAATCAT.................................................	23	1	14.00	0.00	0.00	0.00	14.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCGT.................................................	22	1	14.00	1.00	1.00	0.00	12.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAGGCAT.................................................	22	1	14.00	2.00	0.00	0.00	12.00	0.00
.....................................................................................................................TGAAGCTAGATTACCAAAGCAT.................................................	22	1	13.00	0.00	2.00	0.00	11.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCATT................................................	23	1	13.00	3.00	2.00	1.00	7.00	0.00
.....................................................................................................................TAGAGCTAGATTACCAAAGCAT.................................................	22	1	13.00	2.00	1.00	2.00	8.00	0.00
....................................................................................................................ATAAAGCTAGATTACCCAAGCAT.................................................	23	1	12.00	1.00	1.00	0.00	10.00	0.00
.....................................................................................................................TAAAGCTAGCTTACCAAAGCAT.................................................	22	1	12.00	2.00	0.00	0.00	10.00	0.00
....................................................................................................................ATAAAGATAGATTACCAAAGCAT.................................................	23	1	12.00	2.00	1.00	0.00	9.00	0.00
......................................................................................................................AAAGCTAGATTACCAAAGCATT................................................	22	1	12.00	2.00	2.00	0.00	8.00	0.00
.....................................................................................................................TAAAGCTAGATTAACAAAGCAT.................................................	22	1	11.00	0.00	2.00	0.00	9.00	0.00
....................................................................................................................ATAAAGCTAGAGTACCAAAGCAT.................................................	23	1	11.00	0.00	2.00	0.00	9.00	0.00
....................................................................................................................ACAAAGCTAGATTACCAAAGCAT.................................................	23	1	10.00	0.00	2.00	1.00	7.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAGAGCAT.................................................	22	1	10.00	0.00	2.00	3.00	5.00	0.00
.....................................................................................................................TAAAGCTAGATTACAAAAGCAT.................................................	22	1	9.00	0.00	1.00	2.00	6.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCTT.................................................	23	1	9.00	0.00	0.00	1.00	8.00	0.00
.....................................................................................................................TAAAGCTAGATTACCGAAGCAT.................................................	22	1	8.00	0.00	1.00	1.00	6.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAACCAT.................................................	23	1	8.00	0.00	0.00	0.00	8.00	0.00
.....................................................................................................................TCAAGCTAGATTACCAAAGCAT.................................................	22	1	8.00	2.00	0.00	0.00	6.00	0.00
....................................................................................................................ATAAAGCTAGGTTACCAAAGCAT.................................................	23	1	8.00	0.00	0.00	1.00	7.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCATT................................................	24	1	8.00	2.00	2.00	1.00	3.00	0.00
.....................................................................................................................TAAAGCTAGTTTACCAAAGCAT.................................................	22	1	8.00	0.00	0.00	0.00	8.00	0.00
....................................................................................................................ATACAGCTAGATTACCAAAGCAT.................................................	23	1	7.00	0.00	1.00	0.00	6.00	0.00
....................................................................................................................ATAAAACTAGATTACCAAAGCAT.................................................	23	1	7.00	1.00	0.00	0.00	6.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAACAT.................................................	22	1	7.00	0.00	2.00	1.00	4.00	0.00
....................................................................................................................ATAAAGCTAGATTACAAAAGCAT.................................................	23	1	7.00	1.00	1.00	0.00	5.00	0.00
.....................................................................................................................TAAAGCTAGATTCCCAAAGCAT.................................................	22	1	7.00	0.00	0.00	0.00	7.00	0.00
....................................................................................................................ATAAAGCTACATTACCAAAGCAT.................................................	23	1	7.00	0.00	1.00	0.00	6.00	0.00
.....................................................................................................................TAAACCTAGATTACCAAAGCAT.................................................	22	1	7.00	0.00	1.00	2.00	4.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAGAGCAT.................................................	23	1	7.00	0.00	1.00	0.00	6.00	0.00
....................................................................................................................ATCAAGCTAGATTACCAAAGCAT.................................................	23	1	7.00	0.00	1.00	0.00	6.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAATGCAT.................................................	22	1	7.00	1.00	0.00	0.00	6.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAACCAT.................................................	22	1	7.00	0.00	1.00	0.00	6.00	0.00
.....................................................................................................................TAAAGCTCGATTACCAAAGCAT.................................................	22	1	7.00	0.00	1.00	0.00	6.00	0.00
.....................................................................................................................TATAGCTAGATTACCAAAGCAT.................................................	22	1	6.00	1.00	1.00	0.00	4.00	0.00
.....................................................................................................................TAAATCTAGATTACCAAAGCAT.................................................	22	1	6.00	0.00	1.00	4.00	1.00	0.00
....................................................................................................................ATAAACCTAGATTACCAAAGCAT.................................................	23	1	6.00	0.00	1.00	1.00	4.00	0.00
....................................................................................................................ATAAAGCTAGATTGCCAAAGCAT.................................................	23	1	6.00	0.00	3.00	0.00	3.00	0.00
.....................................................................................................................TAATGCTAGATTACCAAAGCAT.................................................	22	1	6.00	0.00	0.00	0.00	6.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCAC.................................................	23	1	6.00	0.00	0.00	1.00	5.00	0.00
.....................................................................................................................TAAAACTAGATTACCAAAGCAT.................................................	22	1	6.00	0.00	0.00	0.00	6.00	0.00
.....................................................................................................................TAAAGCTAGATCACCAAAGCAT.................................................	22	1	6.00	0.00	2.00	1.00	3.00	0.00
.....................................................................................................................TAAAGCTAGGTTACCAAAGCAT.................................................	22	1	6.00	2.00	2.00	0.00	2.00	0.00
.....................................................................................................................TAAAGATAGATTACCAAAGCAT.................................................	22	1	6.00	0.00	0.00	0.00	6.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCAC.................................................	22	1	6.00	1.00	1.00	0.00	4.00	0.00
.....................................................................................................................TAAAGCTAGATTACTAAAGCAT.................................................	22	1	6.00	0.00	1.00	0.00	5.00	0.00
............................................................................GCTTTGGCGCTTTAGCTGTAT...........................................................................................	21	1	6.00	0.00	1.00	0.00	4.00	1.00
.....................................................................................................................TAAAGCTAGATTACCATAGCAT.................................................	22	1	6.00	0.00	0.00	0.00	6.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCGT.................................................	23	1	6.00	0.00	0.00	0.00	6.00	0.00
....................................................................................................................ATAAAGCTAGATTCCCAAAGCAT.................................................	23	1	6.00	0.00	0.00	0.00	6.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGTAT.................................................	22	1	6.00	1.00	1.00	1.00	3.00	0.00
.....................................................................................................................TAAAGCTAGATTACCTAAGCAT.................................................	22	1	5.00	1.00	0.00	0.00	4.00	0.00
....................................................................................................................ATAAAGCTCGATTACCAAAGCAT.................................................	23	1	5.00	0.00	0.00	0.00	5.00	0.00
....................................................................................................................ATAAAGCTAGCTTACCAAAGCCT.................................................	23	1	5.00	0.00	0.00	0.00	5.00	0.00
.....................................................................................................................TAACGCTAGATTACCAAAGCAT.................................................	22	1	5.00	0.00	1.00	0.00	4.00	0.00
.....................................................................................................................TTAAGCTAGATTACCAAAGCAT.................................................	22	1	5.00	1.00	0.00	0.00	4.00	0.00
.....................................................................................................................TAGAGCTGGATTACCAAAGCAT.................................................	22	1	5.00	0.00	1.00	0.00	4.00	0.00
....................................................................................................................ATAATGCTAGATTACCAAAGCAT.................................................	23	1	5.00	0.00	1.00	0.00	4.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAGGCAT.................................................	23	1	5.00	0.00	1.00	0.00	4.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAGTAT.................................................	23	1	5.00	0.00	1.00	0.00	4.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGAAT.................................................	22	1	5.00	0.00	0.00	0.00	5.00	0.00
.....................................................................................................................TAAAGCTAGATTATCAAAGCAT.................................................	22	1	5.00	2.00	1.00	0.00	2.00	0.00
....................................................................................................................ATAAAGCTAGTTTACCAAAGCAT.................................................	23	1	5.00	0.00	0.00	0.00	5.00	0.00
....................................................................................................................ATAAAGCTAGATCACCAAAGCAT.................................................	23	1	5.00	1.00	0.00	0.00	4.00	0.00
....................................................................................................................ATAAAGCTAGATTAACAAAGCAT.................................................	23	1	5.00	0.00	1.00	0.00	4.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCAG.................................................	22	1	5.00	1.00	0.00	0.00	4.00	0.00
....................................................................................................................ATAAATCTAGATTACCAAAGCAT.................................................	23	1	4.00	1.00	0.00	1.00	2.00	0.00
....................................................................................................................ATAAAGCTAGATTACTAAAGCAT.................................................	23	1	4.00	1.00	1.00	0.00	2.00	0.00
.....................................................................................................................TAAAGCTAGATTGCCAAAGCAT.................................................	22	1	4.00	0.00	1.00	1.00	2.00	0.00
.....................................................................................................................TAAAGCTAGATTACCACCGCAT.................................................	22	1	4.00	0.00	0.00	0.00	4.00	0.00
....................................................................................................................ATAAAGCTAGATGACCAAAGCAT.................................................	23	1	4.00	2.00	0.00	0.00	2.00	0.00
.....................................................................................................................TAAAGCGAGATTACCAAAGCAT.................................................	22	1	4.00	0.00	0.00	0.00	4.00	0.00

droEre2

AT---------AA-GTGAC--------TT-AG-AGTG-CA----------------------GCTGCCTTGCCATTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAACTACTTCATAAAGCTAGATTACCAAAGCATTGGCT-TCTGCAG-ATCAA-TCTTCA-G----------AAAGA----AA	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.....................................................................................................................TAAAGCTAGATTACCAAAGCAT.................................................	22	1	4285.00	273.00	376.00	0.00	3636.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCAT.................................................	23	1	3102.00	119.00	230.00	0.00	2753.00
............................................................................GCTTTGGCGCTTTAGCTGTATG..........................................................................................	22	1	256.00	30.00	12.00	0.00	214.00
.....................................................................................................................TAAAGCTAGATTACCAAAGC...................................................	20	1	243.00	5.00	12.00	0.00	226.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCA..................................................	21	1	239.00	5.00	29.00	0.00	205.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCA..................................................	22	1	164.00	1.00	17.00	0.00	146.00
....................................................................................................................ATAAAGCTAGATTACCAAAGC...................................................	21	1	100.00	1.00	9.00	0.00	90.00
....................................................................................................................ATAAAGCTAGATTACCAAAG....................................................	20	1	97.00	0.00	1.00	0.00	96.00
.....................................................................................................................TAAAGCTAGATTACCAAAG....................................................	19	1	91.00	0.00	3.00	0.00	88.00
......................................................................................................................AAAGCTAGATTACCAAAGCAT.................................................	21	1	60.00	1.00	4.00	0.00	55.00
.....................................................................................................................TAAAGCTAGATTACCAAATCAT.................................................	22	1	42.00	3.00	1.00	0.00	38.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCAC.................................................	23	1	38.00	0.00	0.00	0.00	38.00
............................................................................GCTTTGGCGCTTTAGCTGTATGA.........................................................................................	23	1	37.00	5.00	8.00	0.00	24.00
.....................................................................................................................TAAATCTAGATTACCAAAGCAT.................................................	22	1	36.00	0.00	0.00	0.00	36.00
.....................................................................................................................TAAAGCTATATTACCAAAGCAT.................................................	22	1	32.00	2.00	0.00	0.00	30.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCAA.................................................	23	1	32.00	0.00	0.00	0.00	32.00
....................................................................................................................ATAAAGCTAGATTACCAAATCAT.................................................	23	1	31.00	0.00	2.00	0.00	29.00
....................................................................................................................ATAAAGCTAGATTACAAAAGCAT.................................................	23	1	27.00	0.00	4.00	0.00	23.00
....................................................................................................................ATAAATCTAGATTACCAAAGCAT.................................................	23	1	25.00	0.00	0.00	0.00	25.00
.....................................................................................................................TAAAGATAGATTACCAAAGCAT.................................................	22	1	21.00	0.00	1.00	0.00	20.00
.....................................................................................................................TAAAGCTAGATTACAAAAGCAT.................................................	22	1	20.00	1.00	2.00	0.00	17.00
.....................................................................................................................TAAGGCTAGATTACCAAAGCAT.................................................	22	1	19.00	0.00	2.00	0.00	17.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCAG.................................................	23	1	19.00	0.00	0.00	0.00	19.00
....................................................................................................................ATAAAGCTATATTACCAAAGCAT.................................................	23	1	19.00	1.00	0.00	0.00	18.00
....................................................................................................................ATAAAGATAGATTACCAAAGCAT.................................................	23	1	16.00	0.00	1.00	0.00	15.00
.....................................................................................................................TAAAGCTAGATTACCAAAGAAT.................................................	22	1	11.00	0.00	2.00	0.00	9.00
......................................................................................................................AAAGCTAGATTACCAAAGCATT................................................	22	1	11.00	0.00	0.00	0.00	11.00
.....................................................................................................................TAAAGCTAGATTACCAAAGTAT.................................................	22	1	10.00	1.00	0.00	0.00	9.00
....................................................................................................................ATAAAGCTGGATTACCAAAGCAT.................................................	23	1	10.00	0.00	2.00	0.00	8.00
....................................................................................................................ATAAAGCTAGATTACCAAAGAAT.................................................	23	1	10.00	0.00	1.00	0.00	9.00
.....................................................................................................................TAAACCTAGATTACCAAAGCAT.................................................	22	1	8.00	1.00	0.00	0.00	7.00
....................................................................................................................ATAAAGCTAGATTACCAAA.....................................................	19	1	8.00	0.00	0.00	0.00	8.00
.....................................................................................................................TAAAGCTAGATTACCAAGGCAT.................................................	22	1	8.00	0.00	3.00	0.00	5.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCATT................................................	23	1	8.00	0.00	0.00	0.00	8.00
.....................................................................................................................TAAAGCTAGATTATCAAAGCAT.................................................	22	1	8.00	1.00	0.00	0.00	7.00
....................................................................................................................ATAAAGCTAGATTACCCAAGCAT.................................................	23	1	7.00	1.00	1.00	0.00	5.00
.....................................................................................................................TAAAACTAGATTACCAAAGCAT.................................................	22	1	7.00	3.00	1.00	0.00	3.00
.....................................................................................................................TAAAGCTAGCTTACCAAAGCAT.................................................	22	1	7.00	2.00	1.00	0.00	4.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCCT.................................................	22	1	7.00	0.00	4.00	0.00	3.00
.....................................................................................................................TAGAGCTAGATTACCAAAGCAT.................................................	22	1	7.00	0.00	1.00	0.00	6.00
.....................................................................................................................TAAAGCTAGATTAACAAAGCAT.................................................	22	1	6.00	0.00	0.00	0.00	6.00
....................................................................................................................ATGAAGCTAGATTACCAAAGCAT.................................................	23	1	6.00	0.00	0.00	0.00	6.00
.....................................................................................................................TAAAGCTAGACTACCAAAGCAT.................................................	22	1	6.00	2.00	0.00	0.00	4.00
....................................................................................................................ATAAACCTAGATTACCAAAGCAT.................................................	23	1	6.00	0.00	0.00	0.00	6.00
............................................................................GCTTTGGCGCTTTAGCTGTATT..........................................................................................	22	1	6.00	6.00	0.00	0.00	0.00
.....................................................................................................................TAAAGCTGGATTACCAAAGCAT.................................................	22	1	6.00	0.00	1.00	0.00	5.00
.....................................................................................................................TAAAGCTAGATTACCAAACCAT.................................................	22	1	6.00	0.00	1.00	0.00	5.00
.....................................................................................................................TACAGCTAGATTACCAAAGCAT.................................................	22	1	6.00	0.00	0.00	0.00	6.00
......................................................................................................................TAAACTAGATTACCAAAGCAT.................................................	21	1	6.00	0.00	0.00	0.00	6.00
....................................................................................................................ATAAAGCTAGATTACCAAACCAT.................................................	23	1	6.00	0.00	1.00	0.00	5.00
............................................................................GCTTTGGCGCTTTAGCTGTAT...........................................................................................	21	1	6.00	1.00	1.00	0.00	4.00
.....................................................................................................................TAAAGCTAGATTACTAAAGCAT.................................................	22	1	5.00	0.00	0.00	0.00	5.00
....................................................................................................................ATCAAGCTAGATTACCAAAGCAT.................................................	23	1	5.00	1.00	0.00	0.00	4.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCT..................................................	21	1	5.00	0.00	0.00	0.00	5.00
....................................................................................................................ATAAAGCTAGATCACCAAAGCAT.................................................	23	1	5.00	0.00	0.00	0.00	5.00
....................................................................................................................ATAGAGCTAGATTACCAAAGCAT.................................................	23	1	5.00	0.00	0.00	0.00	5.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCCT.................................................	23	1	5.00	1.00	2.00	0.00	2.00
.....................................................................................................................ATAAGCTAGATTACCAAAGCAT.................................................	22	1	4.00	0.00	0.00	0.00	4.00
.....................................................................................................................TAAAGCTAGATTACCCAAGCAT.................................................	22	1	4.00	1.00	1.00	0.00	2.00
....................................................................................................................ATAAAGCTAGATTACCAACGCAT.................................................	23	1	4.00	0.00	2.00	0.00	2.00
....................................................................................................................ATAAAGTTAGATTACCAAAGCAT.................................................	23	1	4.00	0.00	0.00	0.00	4.00
....................................................................................................................ATAACGCTAGATTACCAAAGCAT.................................................	23	1	4.00	0.00	0.00	0.00	4.00
....................................................................................................................ATAAGGCTAGATTACCAAAGCAT.................................................	23	1	4.00	0.00	1.00	0.00	3.00
....................................................................................................................ATAAAGCTAGATTACCAAAACAT.................................................	23	1	4.00	1.00	0.00	0.00	3.00
....................................................................................................................ATAAAGCTAGATTACCACAGCAT.................................................	23	1	4.00	2.00	2.00	0.00	0.00
.....................................................................................................................TAAAGCTAGATTACCACAGCAT.................................................	22	1	4.00	0.00	3.00	0.00	1.00
....................................................................................................................ATAAAGCCAGATTACCAAAGCAT.................................................	23	1	4.00	0.00	1.00	0.00	3.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCATT................................................	24	1	4.00	1.00	1.00	0.00	2.00
.....................................................................................................................TAAAGCTACATTACCAAAGCAT.................................................	22	1	4.00	2.00	0.00	0.00	2.00
.....................................................................................................................TAAAGCTAGATTGCCAAAGCAT.................................................	22	1	4.00	2.00	0.00	0.00	2.00
.....................................................................................................................TAAAGCTAGATTACCGAAGCAT.................................................	22	1	4.00	0.00	0.00	0.00	4.00
.....................................................................................................................TAAAGTTAGATTACCAAAGCAT.................................................	22	1	4.00	0.00	0.00	0.00	4.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCAA.................................................	22	1	4.00	1.00	1.00	0.00	2.00
.....................................................................................................................AAAAGCTAGATTACCAAAGCAT.................................................	22	1	3.00	0.00	0.00	0.00	3.00
.........................................................................................................................GCTAGATTACCAAAGCAT.................................................	18	1	3.00	0.00	0.00	0.00	3.00
.....................................................................................................................TAAAGCTAGATTACCAAAACAT.................................................	22	1	3.00	1.00	0.00	0.00	2.00
.....................................................................................................................TAAAGCTCGATTACCAAAGCAT.................................................	22	1	3.00	0.00	0.00	0.00	3.00
....................................................................................................................ACAAAGCTAGATTACCAAAGCAT.................................................	23	1	3.00	0.00	0.00	0.00	3.00
............................................................................GCTTTGGCGCTTTAGCTTTATG..........................................................................................	22	1	3.00	3.00	0.00	0.00	0.00
............................................................................GCTTTTGCGCTTTAGCTGTATG..........................................................................................	22	1	3.00	1.00	0.00	0.00	2.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCAC.................................................	22	1	3.00	1.00	0.00	0.00	2.00
....................................................................................................................ATAAAGCTGGATTACCAAAGCA..................................................	22	1	3.00	0.00	0.00	0.00	3.00
....................................................................................................................ATAAAGCTAGATTACCAAAGTAT.................................................	23	1	3.00	0.00	1.00	0.00	2.00
.....................................................................................................................TCAAGCTAGATTACCAAAGCAT.................................................	22	1	3.00	0.00	0.00	0.00	3.00
............................................................................GCTTTGGCGCTTTATCTGTATG..........................................................................................	22	1	3.00	1.00	0.00	0.00	2.00
.....................................................................................................................TAAAGCxAGATTACCAAAGCAT.................................................	21	1	3.00	0.00	0.00	0.00	3.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCGT.................................................	22	1	3.00	0.00	2.00	0.00	1.00
.....................................................................................................................TAAAGCTAGATCACCAAAGCAT.................................................	22	1	3.00	1.00	0.00	0.00	2.00
....................................................................................................................ATTAAGCTAGATTACCAAAGCAT.................................................	23	1	3.00	0.00	0.00	0.00	3.00
....................................................................................................................ATAAAGCTAGATTACCAAAxCAT.................................................	22	1	3.00	0.00	0.00	0.00	3.00
....................................................................................................................ATAAAGCTAGATTATCAAAGCAT.................................................	23	1	3.00	0.00	0.00	0.00	3.00
......................................................................................................................TAAGCTAGATTACCAAAGCAT.................................................	21	1	3.00	0.00	0.00	0.00	3.00
.....................................................................................................................TAAAGCTAGATTACCAAAxCAT.................................................	21	1	3.00	0.00	0.00	0.00	3.00
....................................................................................................................ATAAAGCTAGGTTACCAAAGCAT.................................................	23	1	3.00	0.00	0.00	0.00	3.00
....................................................................................................................ATAAAGCTAGATTACCGAAGCAT.................................................	23	1	3.00	0.00	0.00	0.00	3.00
....................................................................................................................ATAAAGCTAGATTGCCAAAGCAT.................................................	23	1	3.00	0.00	0.00	0.00	3.00

droEug1

AC---------AA-GTGAT--------TA-AA-AGAG-AA----------------------ACTGCTCTGCCGTTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAACTACTTCATAAAGCTAGATTACCAAAGCATTGGCT-TTGGTAG-ATCAA-TCATCA-A----------AAATA----AC

Size

Hit Count

Total Norm

droBia1

CT---------AT-GTTTT--------TG-AA-AAGG-AA----------------------GCTGCCTTGCCGCTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAACTACTTCATAAAGCTAGATTACCAAAGCATTGGCT-TCTGCAG-ATCAA-TCATCA-G----------TTACA----AC

Size

Hit Count

Total Norm

droTak1

AG---------AA-GTGAT--------TT-AA---GG-CA----------------------GCTGCTTTGCCGTTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAACTACTTCATAAAGCTAGATTACCAAAGCATTGGCT-TTGGCAG-ATCAA-TCAACG-A----------ATATA----TC

Size

Hit Count

Total Norm

droEle1

AA---------AA-GTGTT--------TA-AAGAATG-TG----------------------GCTGCTTGACCGTTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAACTACTTCATAAAGCTAGATTACCAAAGCATTGGCT-TTTGCAG-ATCAA-TCATCC-A----------AAATA----AG

Size

Hit Count

Total Norm

droRho1

AT---------AT-GTGAACTAGTTTTTA-AATAAAG-TA----------------------GCTGCCTTGCCGTTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAACTACTTCATAAAGCTAGATTACCAAAGCATTGGCT-TTTGCAG-ATCAA-TCATCA-A----------GTTTA----AC

Size

Hit Count

Total Norm

droFic1

AC---------CA-GTGCT--------AA-AAGAAAT-AA----------------------CCTGCTTTGCCGTTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAACTACTTCATAAAGCTAGATTACCAAAGCATTGGCT-TGTGCAG-ATTAA-CCATCA-A----------ATAGA----CC

Size

Hit Count

Total Norm

droKik1

GT---------TT-----T--------TT-------------------------------GGACTGCTCTTCTGACGCTTTGGCGCTTTAGCTGTATGATAGATTTTTACTACTTCATAAAGCTAGATTACCAAAGCATTGGCGGTCTGCAGGGTAAA-TCATCA-T----------AAATACAAAAT

Size

Hit Count

Total Norm

droAna3

TA---------TA-GTGTT--------CT-A-------TA----------------------GCTGCTTAACCGATGCTTTGGCGCTTTAGCTGTATGATAGATTTAAA-TACTTCATAAAGCTAGATTACCAAAGCATTGGCT-TCCGCAG-GCCTG-TCTTCAAG----------GAATA----AA	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
.....................................................................................................................TAAAGCTAGATTACCAAAGCAT.................................................	22	1	7088.00	1569.00	2318.00	2392.00	809.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCAT.................................................	23	1	3716.00	506.00	1619.00	1229.00	362.00
............................................................................GCTTTGGCGCTTTAGCTGTATG..........................................................................................	22	1	266.00	1.00	250.00	8.00	7.00
.....................................................................................................................TAAAGCTAGATTACCAAAGC...................................................	20	1	205.00	9.00	146.00	29.00	21.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCA..................................................	21	1	150.00	11.00	62.00	65.00	12.00
....................................................................................................................ATAAAGCTAGATTACCAAAG....................................................	20	1	148.00	6.00	129.00	9.00	4.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCA..................................................	22	1	95.00	8.00	45.00	37.00	5.00
.....................................................................................................................TAAAGCTAGATTACCAAAG....................................................	19	1	92.00	1.00	79.00	4.00	8.00
......................................................................................................................AAAGCTAGATTACCAAAGCAT.................................................	21	1	89.00	10.00	37.00	36.00	6.00
....................................................................................................................ATAAAGCTGGATTACCAAAGCAT.................................................	23	1	55.00	1.00	27.00	27.00	0.00
.....................................................................................................................TAAAGATAGATTACCAAAGCAT.................................................	22	1	49.00	9.00	27.00	13.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAATCAT.................................................	22	1	47.00	7.00	22.00	11.00	7.00
............................................................................GCTTTGGCGCTTTAGCTGTATGA.........................................................................................	23	1	41.00	1.00	34.00	5.00	1.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCATT................................................	23	1	40.00	6.00	16.00	12.00	6.00
.....................................................................................................................TAAATCTAGATTACCAAAGCAT.................................................	22	1	35.00	9.00	20.00	2.00	4.00
.....................................................................................................................TAAAGCTGGATTACCAAAGCAT.................................................	22	1	34.00	5.00	12.00	17.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAGC...................................................	21	1	32.00	2.00	18.00	9.00	3.00
......................................................................................................................AAAGCTAGATTACCAAAGCATT................................................	22	1	30.00	0.00	12.00	16.00	2.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCCT.................................................	22	1	28.00	10.00	3.00	8.00	7.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCATT................................................	24	1	28.00	6.00	14.00	7.00	1.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCGT.................................................	22	1	28.00	15.00	4.00	7.00	2.00
....................................................................................................................ATAAAGATAGATTACCAAAGCAT.................................................	23	1	28.00	2.00	21.00	5.00	0.00
.....................................................................................................................TAAAGCTAGATTACAAAAGCAT.................................................	22	1	26.00	4.00	6.00	16.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGAAT.................................................	22	1	25.00	7.00	16.00	1.00	1.00
....................................................................................................................ATAAAGCTAGATTACCAAATCAT.................................................	23	1	25.00	0.00	16.00	6.00	3.00
.....................................................................................................................TAAAGCTAGATTACCACAGCAT.................................................	22	1	23.00	0.00	1.00	14.00	8.00
....................................................................................................................ATAAATCTAGATTACCAAAGCAT.................................................	23	1	22.00	4.00	18.00	0.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCTT.................................................	22	1	22.00	5.00	3.00	13.00	1.00
....................................................................................................................ATAAAGCTAGATTACCAAAGAAT.................................................	23	1	22.00	7.00	13.00	2.00	0.00
.....................................................................................................................TAAAGCTAGATGACCAAAGCAT.................................................	22	1	20.00	11.00	0.00	9.00	0.00
.....................................................................................................................TAAGGCTAGATTACCAAAGCAT.................................................	22	1	18.00	1.00	5.00	10.00	2.00
....................................................................................................................ATAAAGCTAGATTACCAAAGTAT.................................................	23	1	17.00	8.00	6.00	3.00	0.00
.....................................................................................................................TAAAGCTAGATCACCAAAGCAT.................................................	22	1	17.00	7.00	2.00	5.00	3.00
....................................................................................................................ATAAAGCTAGATTACAAAAGCAT.................................................	23	1	16.00	2.00	2.00	10.00	2.00
.....................................................................................................................TAAAGCTAGATTACCAAACCAT.................................................	22	1	16.00	2.00	5.00	6.00	3.00
.....................................................................................................................TAAAGCGAGATTACCAAAGCAT.................................................	22	1	16.00	0.00	0.00	14.00	2.00
.....................................................................................................................TAAAGCTAGAGTACCAAAGCAT.................................................	22	1	15.00	4.00	0.00	11.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGTAT.................................................	22	1	14.00	1.00	6.00	6.00	1.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCCT.................................................	23	1	14.00	0.00	2.00	9.00	3.00
....................................................................................................................ATAAAGCTATATTACCAAAGCAT.................................................	23	1	14.00	3.00	8.00	2.00	1.00
.....................................................................................................................CAAAGCTAGATTACCAAAGCAT.................................................	22	1	14.00	1.00	2.00	9.00	2.00
....................................................................................................................ATAAAGCTAGATTACCAACGCAT.................................................	23	1	13.00	0.00	0.00	13.00	0.00
.....................................................................................................................TGAAGCTAGATTACCAAAGCAT.................................................	22	1	13.00	4.00	2.00	4.00	3.00
....................................................................................................................ATGAAGCTAGATTACCAAAGCAT.................................................	23	1	12.00	0.00	6.00	6.00	0.00
.....................................................................................................................TAAAGCTATATTACCAAAGCAT.................................................	22	1	12.00	1.00	3.00	4.00	4.00
.....................................................................................................................GAAAGCTAGATTACCAAAGCAT.................................................	22	1	12.00	1.00	0.00	11.00	0.00
.....................................................................................................................TAAAGCTAGATTACCGAAGCAT.................................................	22	1	12.00	4.00	3.00	5.00	0.00
.....................................................................................................................TAGAGCTAGATTACCAAAGCAT.................................................	22	1	12.00	0.00	6.00	5.00	1.00
....................................................................................................................AGAAAGCTAGATTACCAAAGCAT.................................................	23	1	12.00	3.00	0.00	9.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAACGCAT.................................................	22	1	11.00	0.00	0.00	9.00	2.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCAC.................................................	22	1	11.00	3.00	1.00	7.00	0.00
.....................................................................................................................TAAAGCCAGATTACCAAAGCAT.................................................	22	1	10.00	1.00	3.00	5.00	1.00
....................................................................................................................ATAAAGCTAGAGTACCAAAGCAT.................................................	23	1	10.00	1.00	1.00	7.00	1.00
....................................................................................................................ATAAAGCTAGATTACCAAACCAT.................................................	23	1	10.00	0.00	0.00	6.00	4.00
.....................................................................................................................TAAAGCTAGATTACTAAAGCAT.................................................	22	1	9.00	0.00	2.00	6.00	1.00
....................................................................................................................ATAAAGCTAGATTACCAGAGCAT.................................................	23	1	9.00	2.00	1.00	6.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAGGCAT.................................................	22	1	9.00	2.00	1.00	5.00	1.00
.....................................................................................................................TAAAGCTAGATTACCCAAGCAT.................................................	22	1	9.00	2.00	0.00	1.00	6.00
.....................................................................................................................AAAAGCTAGATTACCAAAGCAT.................................................	22	1	8.00	3.00	2.00	1.00	2.00
....................................................................................................................ATAAGGCTAGATTACCAAAGCAT.................................................	23	1	8.00	0.00	4.00	3.00	1.00
.....................................................................................................................TAAACCTAGATTACCAAAGCAT.................................................	22	1	8.00	0.00	6.00	0.00	2.00
....................................................................................................................ATAAAGCTAGATTACCGAAGCAT.................................................	23	1	8.00	1.00	4.00	3.00	0.00
.....................................................................................................................TAAAGCTAGACTACCAAAGCAT.................................................	22	1	8.00	4.00	1.00	2.00	1.00
....................................................................................................................GTAAAGCTAGATTACCAAAGCAT.................................................	23	1	8.00	1.00	5.00	1.00	1.00
.....................................................................................................................TAAAGCTAGATTATCAAAGCAT.................................................	22	1	8.00	0.00	2.00	5.00	1.00
.....................................................................................................................TAAAGCTAGATTACCAGAGCAT.................................................	22	1	8.00	0.00	1.00	7.00	0.00
.....................................................................................................................TAAAGCTAGATTCCCAAAGCAT.................................................	22	1	8.00	4.00	0.00	3.00	1.00
.....................................................................................................................TTAAGCTAGATTACCAAAGCAT.................................................	22	1	8.00	1.00	0.00	5.00	2.00
.....................................................................................................................TAAAGCTAGATTAACAAAGCAT.................................................	22	1	8.00	1.00	1.00	5.00	1.00
.....................................................................................................................TAACGCTAGATTACCAAAGCAT.................................................	22	1	8.00	1.00	0.00	5.00	2.00
.....................................................................................................................TAAAACTAGATTACCAAAGCAT.................................................	22	1	8.00	1.00	1.00	2.00	4.00
.....................................................................................................................TAAAGCTAGATTACCAAAACAT.................................................	22	1	8.00	0.00	1.00	4.00	3.00
.....................................................................................................................TAAAGCTAGATTACCTAAGCAT.................................................	22	1	7.00	2.00	1.00	3.00	1.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCAG.................................................	22	1	7.00	0.00	0.00	6.00	1.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCGT.................................................	23	1	7.00	0.00	2.00	5.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAGGAT.................................................	23	1	7.00	2.00	4.00	1.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAA.....................................................	19	1	7.00	0.00	4.00	3.00	0.00
....................................................................................................................ATAGAGCTAGATTACCAAAGCAT.................................................	23	1	7.00	0.00	3.00	3.00	1.00
.....................................................................................................................TAAAGTTAGATTACCAAAGCAT.................................................	22	1	7.00	1.00	4.00	2.00	0.00
....................................................................................................................ATAAACCTAGATTACCAAAGCAT.................................................	23	1	7.00	2.00	2.00	2.00	1.00
.....................................................................................................................TAAAGCTACATTACCAAAGCAT.................................................	22	1	7.00	1.00	0.00	1.00	5.00
....................................................................................................................ATAAAGATAGATTACCAAAGAAT.................................................	23	1	7.00	0.00	7.00	0.00	0.00
....................................................................................................................ATAAAGCTAGATTACTAAAGCAT.................................................	23	1	6.00	2.00	3.00	1.00	0.00
.....................................................................................................................TAAAGCTAGATTGCCAAAGCAT.................................................	22	1	6.00	1.00	2.00	2.00	1.00
....................................................................................................................ATAAAGCTAGATTACCATAGCAT.................................................	23	1	6.00	2.00	0.00	4.00	0.00
.....................................................................................................................TAAAGCTGGATTACCAAAGC...................................................	20	1	6.00	0.00	6.00	0.00	0.00
....................................................................................................................ATAAAGCTAGATTACCACAGCAT.................................................	23	1	6.00	0.00	0.00	4.00	2.00
....................................................................................................................ATAAAGCTAGATTACCAAGGCAT.................................................	23	1	6.00	1.00	2.00	3.00	0.00
....................................................................................................................ATAACGCTAGATTACCAAAGCAT.................................................	23	1	6.00	0.00	1.00	4.00	1.00
.....................................................................................................................TAAAGCTAGATTAGCAAAGCAT.................................................	22	1	6.00	2.00	0.00	4.00	0.00
.....................................................................................................................TAATGCTAGATTACCAAAGCAT.................................................	22	1	6.00	0.00	0.00	6.00	0.00
....................................................................................................................ATAAAGCTAGCTTACCAAAGCAT.................................................	23	1	6.00	1.00	0.00	4.00	1.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCAC.................................................	23	1	6.00	1.00	3.00	2.00	0.00
..............................................................................TTTGGCGCTTTAGCTGTATG..........................................................................................	20	1	6.00	1.00	4.00	1.00	0.00
.....................................................................................................................TAAAGGTAGATTACCAAAGCAT.................................................	22	1	5.00	0.00	0.00	5.00	0.00
....................................................................................................................ATAAAGTTAGATTACCAAAGCAT.................................................	23	1	5.00	2.00	1.00	2.00	0.00
....................................................................................................................ATAAAGCGAGATTACCAAAGCAT.................................................	23	1	5.00	0.00	0.00	3.00	2.00
....................................................................................................................ATAAAGCTAGATTGCCAAAGCAT.................................................	23	1	5.00	1.00	3.00	1.00	0.00
....................................................................................................................ATAAAGCTACATTACCAAAGCAT.................................................	23	1	5.00	0.00	0.00	3.00	2.00
....................................................................................................................ATAAAGCTGGATTACCAAAGCA..................................................	22	1	5.00	0.00	4.00	1.00	0.00
....................................................................................................................ATAAAGCTAGACTACCAAAGCAT.................................................	23	1	5.00	0.00	0.00	4.00	1.00

droBip1

AT-------------------------------------------------------------CTGTTCTACCTGTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAA-TACTTCATAAAGCTAGATTACCAAAGCATGGGTT-TTCGCAG-GTTAA-TCTTCA-T----------TAA--------

Size

Hit Count

Total Norm

dp4

GA---------AA-GTGTT--------TA-AA-AGTA-CAACAATCTAATCTGTGCTTAAGCCCTGCTCTGCTTCTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAAATACTTCATAAAGCTAGATTACCAAAGCATTGGCT-C-TGTGG-AAACT-TCATCC------------AAACA----AT	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
.....................................................................................................................TAAAGCTAGATTACCAAAGCAT.................................................	22	1	4813.00	1265.00	1475.00	2073.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCAT.................................................	23	1	2525.00	534.00	707.00	1284.00	0.00
............................................................................GCTTTGGCGCTTTAGCTGTATG..........................................................................................	22	1	194.00	1.00	161.00	32.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCA..................................................	21	1	129.00	19.00	17.00	93.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCA..................................................	22	1	85.00	11.00	14.00	60.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGC...................................................	20	1	68.00	18.00	12.00	37.00	1.00
......................................................................................................................AAAGCTAGATTACCAAAGCAT.................................................	21	1	52.00	17.00	9.00	26.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAGC...................................................	21	1	39.00	4.00	8.00	27.00	0.00
............................................................................GCTTTGGCGCTTTAGCTGTATGA.........................................................................................	23	1	29.00	0.00	18.00	11.00	0.00
.....................................................................................................................TAAAGCTGGATTACCAAAGCAT.................................................	22	1	19.00	1.00	1.00	17.00	0.00
.....................................................................................................................TAAAGCTAGATTACCACAGCAT.................................................	22	1	18.00	1.00	6.00	11.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCATT................................................	23	1	18.00	6.00	2.00	10.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAG....................................................	20	1	18.00	3.00	11.00	4.00	0.00
....................................................................................................................ATAAAGCTGGATTACCAAAGCAT.................................................	23	1	16.00	1.00	3.00	12.00	0.00
.....................................................................................................................TAGAGCTAGATTACCAAAGCAT.................................................	22	1	14.00	3.00	2.00	9.00	0.00
.....................................................................................................................TAAAGCTAGATTACCCAAGCAT.................................................	22	1	12.00	1.00	9.00	2.00	0.00
....................................................................................................................ATAAAGATAGATTACCAAAGCAT.................................................	23	1	11.00	0.00	7.00	4.00	0.00
.....................................................................................................................TACAGCTAGATTACCAAAGCAT.................................................	22	1	11.00	1.00	1.00	9.00	0.00
.....................................................................................................................TAAAGCTAGATTATCAAAGCAT.................................................	22	1	11.00	0.00	7.00	4.00	0.00
.....................................................................................................................TAAAGCTAGATTAACAAAGCAT.................................................	22	1	11.00	1.00	5.00	5.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCGT.................................................	22	1	11.00	2.00	2.00	7.00	0.00
.....................................................................................................................TAAGGCTAGATTACCAAAGCAT.................................................	22	1	10.00	3.00	3.00	4.00	0.00
....................................................................................................................ATAAAGCTAGATTACCACAGCAT.................................................	23	1	9.00	1.00	3.00	5.00	0.00
.....................................................................................................................TAAAACTAGATTACCAAAGCAT.................................................	22	1	9.00	1.00	4.00	4.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAACGCAT.................................................	22	1	8.00	0.00	5.00	3.00	0.00
.....................................................................................................................TAAAGCTAGATGACCAAAGCAT.................................................	22	1	8.00	0.00	2.00	6.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCCT.................................................	22	1	8.00	1.00	3.00	4.00	0.00
....................................................................................................................ATAAAGCTAGATTACCCAAGCAT.................................................	23	1	8.00	2.00	3.00	3.00	0.00
.....................................................................................................................TGAAGCTAGATTACCAAAGCAT.................................................	22	1	8.00	1.00	4.00	3.00	0.00
.....................................................................................................................TAAAGCTAGACTACCAAAGCAT.................................................	22	1	8.00	1.00	4.00	3.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAACCAT.................................................	22	1	8.00	1.00	1.00	6.00	0.00
.....................................................................................................................TAAAGCTAGATTACCGAAGCAT.................................................	22	1	7.00	2.00	3.00	2.00	0.00
.....................................................................................................................TAAAGCTAGATTACAAAAGCAT.................................................	22	1	7.00	1.00	2.00	4.00	0.00
....................................................................................................................ATAAAGCTAGATTACCATAGCAT.................................................	23	1	7.00	0.00	2.00	5.00	0.00
....................................................................................................................ATACAGCTAGATTACCAAAGCAT.................................................	23	1	7.00	0.00	2.00	5.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCCT.................................................	23	1	7.00	3.00	2.00	2.00	0.00
.....................................................................................................................TAAAGATAGATTACCAAAGCAT.................................................	22	1	7.00	0.00	3.00	4.00	0.00
....................................................................................................................ATAAAGCTAGATTACAAAAGCAT.................................................	23	1	7.00	0.00	4.00	3.00	0.00
....................................................................................................................ATAAAGCTAGAGTACCAAAGCAT.................................................	23	1	6.00	0.00	3.00	3.00	0.00
....................................................................................................................ATAAAGCTAGACTACCAAAGCAT.................................................	23	1	6.00	1.00	1.00	4.00	0.00
.....................................................................................................................TAAAGCTAGATTACCxAAGCAT.................................................	21	1	6.00	4.00	0.00	2.00	0.00
.....................................................................................................................TAAAGCCAGATTACCAAAGCAT.................................................	22	1	6.00	1.00	3.00	2.00	0.00
.....................................................................................................................TAAAGCTCGATTACCAAAGCAT.................................................	22	1	6.00	1.00	2.00	3.00	0.00
.....................................................................................................................TAAAGCTAGATTACTAAAGCAT.................................................	22	1	6.00	1.00	3.00	2.00	0.00
.....................................................................................................................TAAACCTAGATTACCAAAGCAT.................................................	22	1	6.00	3.00	0.00	3.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCAC.................................................	23	1	6.00	0.00	0.00	6.00	0.00
....................................................................................................................ATAAAGCTAGATTAACAAAGCAT.................................................	23	1	6.00	0.00	2.00	4.00	0.00
.....................................................................................................................TAAAGCTAGATTACCTAAGCAT.................................................	22	1	5.00	1.00	3.00	1.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCTT.................................................	22	1	5.00	0.00	1.00	4.00	0.00
....................................................................................................................ATAAAGCTAGATTACCGAAGCAT.................................................	23	1	5.00	1.00	2.00	2.00	0.00
.....................................................................................................................TAAATCTAGATTACCAAAGCAT.................................................	22	1	5.00	3.00	0.00	2.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCTT.................................................	23	1	5.00	0.00	3.00	2.00	0.00
.....................................................................................................................TAACGCTAGATTACCAAAGCAT.................................................	22	1	5.00	0.00	0.00	5.00	0.00
....................................................................................................................ATAAAGCTAGATTACTAAAGCAT.................................................	23	1	5.00	0.00	4.00	1.00	0.00
.....................................................................................................................TAAAGCTAGTTTACCAAAGCAT.................................................	22	1	5.00	0.00	5.00	0.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAACCAT.................................................	23	1	5.00	0.00	3.00	2.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAGGCAT.................................................	22	1	4.00	0.00	1.00	3.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAGT...................................................	21	2	2.00	1.50	0.00	0.50	0.00
....................................................................................................................ATAAAGCTAGATTACCAAA.....................................................	19	1	4.00	0.00	1.00	3.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGTAT.................................................	22	1	4.00	0.00	2.00	2.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCAG.................................................	22	1	4.00	0.00	1.00	3.00	0.00
....................................................................................................................ATAAAGCTAGGTTACCAAAGCAT.................................................	23	1	4.00	1.00	1.00	2.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAACAT.................................................	22	1	4.00	1.00	1.00	2.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCGT.................................................	23	1	4.00	0.00	0.00	4.00	0.00
.....................................................................................................................TAAAGCGAGATTACCAAAGCAT.................................................	22	1	4.00	0.00	2.00	2.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCAG.................................................	23	1	4.00	0.00	2.00	2.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCAC.................................................	22	1	4.00	0.00	1.00	3.00	0.00
.......................................................................................................................AAGCTAGATTACCAAAGCAT.................................................	20	1	4.00	2.00	1.00	1.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAG....................................................	19	1	4.00	0.00	2.00	2.00	0.00
............................................................................GCTTTGGCGCTTTAGCTGTA............................................................................................	20	1	4.00	0.00	3.00	1.00	0.00
....................................................................................................................ATAAGGCTAGATTACCAAAGCAT.................................................	23	1	4.00	0.00	0.00	4.00	0.00
.....................................................................................................................TAAAGCTAGCTTACCAAAGCAT.................................................	22	1	4.00	0.00	4.00	0.00	0.00
.....................................................................................................................CAAAGCTAGATTACCAAAGCAT.................................................	22	1	4.00	1.00	1.00	2.00	0.00
.....................................................................................................................TAAAGCTAGGTTACCAAAGCAT.................................................	22	1	4.00	1.00	1.00	2.00	0.00
.....................................................................................................................TAAAGCTAGATCACCAAAGCAT.................................................	22	1	4.00	2.00	1.00	1.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAACGCAT.................................................	23	1	4.00	1.00	1.00	2.00	0.00
....................................................................................................................GTAAAGCTAGATTACCAAAGCAT.................................................	23	1	4.00	0.00	1.00	3.00	0.00
.....................................................................................................................TAAAGCTAGATTTCCAAAGCAT.................................................	22	1	3.00	0.00	2.00	1.00	0.00
.....................................................................................................................GAAAGCTAGATTACCAAAGCAT.................................................	22	1	3.00	0.00	1.00	2.00	0.00
....................................................................................................................ATAAAGCTAGCTTACCAAAGCAT.................................................	23	1	3.00	0.00	1.00	2.00	0.00
.....................................................................................................................TCAAGCTAGATTACCAAAGCCT.................................................	22	1	3.00	0.00	2.00	1.00	0.00
.....................................................................................................................AAAAGCTAGATTACCAAAGCAT.................................................	22	1	3.00	1.00	1.00	1.00	0.00
....................................................................................................................ACAAAGCTAGATTACCAAAGCAT.................................................	23	1	3.00	2.00	0.00	1.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCATA................................................	24	1	3.00	1.00	1.00	1.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAGAGCAT.................................................	22	1	3.00	1.00	1.00	1.00	0.00
....................................................................................................................ATCAAGCTAGATTACCAAAGCAT.................................................	23	1	3.00	0.00	0.00	3.00	0.00
............................................................................GCTTTGGCGCTTTAGCTGTATT..........................................................................................	22	1	3.00	0.00	3.00	0.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAATCAT.................................................	22	1	3.00	0.00	0.00	3.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAGAGCAT.................................................	23	1	3.00	0.00	3.00	0.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAATGCAT.................................................	22	1	3.00	0.00	0.00	3.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGAAT.................................................	22	1	3.00	0.00	3.00	0.00	0.00
....................................................................................................................ATAATGCTAGATTACCAAAGCAT.................................................	23	1	3.00	0.00	1.00	2.00	0.00
.....................................................................................................................TAAAGTTAGATTACCAAAGCAT.................................................	22	1	3.00	0.00	1.00	2.00	0.00
....................................................................................................................ATAAAGTTAGATTACCAAAGCAT.................................................	23	1	3.00	0.00	2.00	1.00	0.00
.....................................................................................................................TAAAGCTAGATTCCCAAAGCAT.................................................	22	1	3.00	1.00	0.00	2.00	0.00
....................................................................................................................ATAGAGCTAGATTACCAAAGCAT.................................................	23	1	3.00	0.00	2.00	1.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCATT................................................	24	1	3.00	0.00	3.00	0.00	0.00
............................................................................GCTTTGGCGCTTTAGCTGTAT...........................................................................................	21	1	3.00	0.00	1.00	2.00	0.00
....................................................................................................................ATAAAGCTAGATTACCTAAGCAT.................................................	23	1	3.00	0.00	0.00	3.00	0.00
.....................................................................................................................TAAAGCTAGATTGCCAAAGCAT.................................................	22	1	3.00	0.00	1.00	2.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAACGCCT.................................................	23	1	3.00	0.00	0.00	3.00	0.00

droPer1

GA---------AA-GTGTT--------TA-AA-AGTA-CGACAATCTAATCTGTGCTTAAGCCCTGCTCTGCTTCTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAAATACTTCATAAAGCTAGATTACCAAAGCATTGGCT-C-TGTGG-AAACT-TCATCC------------AAACA----AT	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.....................................................................................................................TAAAGCTAGATTACCAAAGCAT.................................................	22	1	6822.00	548.00	405.00	1727.00	4135.00	7.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCAT.................................................	23	1	4893.00	257.00	197.00	1178.00	3261.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCA..................................................	21	1	201.00	7.00	5.00	78.00	111.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCA..................................................	22	1	118.00	11.00	4.00	33.00	70.00	0.00
............................................................................GCTTTGGCGCTTTAGCTGTATG..........................................................................................	22	1	101.00	13.00	37.00	19.00	32.00	0.00
......................................................................................................................AAAGCTAGATTACCAAAGCAT.................................................	21	1	94.00	5.00	2.00	29.00	58.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGC...................................................	20	1	76.00	4.00	1.00	28.00	40.00	3.00
....................................................................................................................ATAAAGCTAGATTACCAAAGC...................................................	21	1	44.00	1.00	3.00	15.00	25.00	0.00
.....................................................................................................................TAAAGCTAGATTACCACAGCAT.................................................	22	1	30.00	0.00	3.00	5.00	22.00	0.00
....................................................................................................................ATAAAGATAGATTACCAAAGCAT.................................................	23	1	30.00	0.00	0.00	2.00	28.00	0.00
............................................................................GCTTTGGCGCTTTAGCTGTATGA.........................................................................................	23	1	29.00	2.00	5.00	15.00	7.00	0.00
....................................................................................................................ATAAAGCTGGATTACCAAAGCAT.................................................	23	1	29.00	0.00	1.00	5.00	23.00	0.00
.....................................................................................................................TAAAGATAGATTACCAAAGCAT.................................................	22	1	27.00	1.00	0.00	15.00	11.00	0.00
.....................................................................................................................TAAAGCTAGAGTACCAAAGCAT.................................................	22	1	24.00	0.00	1.00	0.00	23.00	0.00
.....................................................................................................................TAAAGCTGGATTACCAAAGCAT.................................................	22	1	24.00	1.00	1.00	2.00	20.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCCT.................................................	23	1	23.00	0.00	1.00	6.00	16.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAACGCAT.................................................	22	1	22.00	1.00	1.00	4.00	16.00	0.00
.....................................................................................................................TAAAGCTAGATGACCAAAGCAT.................................................	22	1	22.00	0.00	1.00	2.00	19.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCCT.................................................	22	1	20.00	0.00	2.00	4.00	14.00	0.00
.....................................................................................................................TAAAGCTAGATTACAAAAGCAT.................................................	22	1	20.00	0.00	0.00	7.00	13.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCAC.................................................	22	1	19.00	0.00	1.00	4.00	14.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCTT.................................................	23	1	19.00	0.00	0.00	7.00	12.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAATCAT.................................................	22	1	19.00	0.00	1.00	4.00	14.00	0.00
.....................................................................................................................TAAGGCTAGATTACCAAAGCAT.................................................	22	1	19.00	0.00	2.00	6.00	11.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCTT.................................................	22	1	18.00	0.00	1.00	1.00	16.00	0.00
....................................................................................................................ATAAAGCTAGATTACAAAAGCAT.................................................	23	1	18.00	0.00	0.00	1.00	17.00	0.00
....................................................................................................................AGAAAGCTAGATTACCAAAGCAT.................................................	23	1	18.00	0.00	0.00	0.00	18.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAG....................................................	20	1	18.00	1.00	4.00	4.00	9.00	0.00
....................................................................................................................ATAAAGCTAGCTTACCAAAGCAT.................................................	23	1	17.00	1.00	0.00	2.00	14.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAGAGCAT.................................................	22	1	16.00	0.00	1.00	3.00	12.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAACCAT.................................................	22	1	16.00	0.00	0.00	5.00	11.00	0.00
.....................................................................................................................TAAAGCGAGATTACCAAAGCAT.................................................	22	1	15.00	0.00	0.00	0.00	15.00	0.00
....................................................................................................................ATAAGGCTAGATTACCAAAGCAT.................................................	23	1	15.00	0.00	1.00	2.00	12.00	0.00
....................................................................................................................ATAAAGCGAGATTACCAAAGCAT.................................................	23	1	15.00	0.00	0.00	1.00	14.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAATCAT.................................................	23	1	15.00	0.00	2.00	1.00	12.00	0.00
....................................................................................................................ATAAAGCTAGATTAACAAAGCAT.................................................	23	1	15.00	0.00	1.00	2.00	12.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAG....................................................	19	1	14.00	2.00	2.00	6.00	3.00	1.00
.....................................................................................................................TAAAGCTAGCTTACCAAAGCAT.................................................	22	1	14.00	0.00	0.00	1.00	13.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCAC.................................................	23	1	14.00	0.00	0.00	1.00	13.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAGGCAT.................................................	22	1	14.00	0.00	2.00	2.00	10.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAGAAT.................................................	23	1	14.00	0.00	0.00	6.00	8.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCATT................................................	23	1	14.00	1.00	1.00	5.00	7.00	0.00
.....................................................................................................................TAAAGCTAGATTAACAAAGCAT.................................................	22	1	14.00	0.00	0.00	2.00	12.00	0.00
....................................................................................................................ATAAACCTAGATTACCAAAGCAT.................................................	23	1	13.00	0.00	0.00	3.00	10.00	0.00
.....................................................................................................................TAAAGCTAGATTACCATAGCAT.................................................	22	1	13.00	0.00	0.00	0.00	13.00	0.00
.....................................................................................................................TAACGCTAGATTACCAAAGCAT.................................................	22	1	12.00	0.00	0.00	1.00	11.00	0.00
....................................................................................................................ATAAAGCTAGATTACCCAAGCAT.................................................	23	1	12.00	0.00	1.00	4.00	7.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAACGCAT.................................................	23	1	12.00	0.00	0.00	3.00	9.00	0.00
.....................................................................................................................TAGAGCTAGATTACCAAAGCAT.................................................	22	1	12.00	0.00	0.00	2.00	10.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCGT.................................................	22	1	12.00	0.00	0.00	3.00	9.00	0.00
....................................................................................................................ATAAAGCTAGACTACCAAAGCAT.................................................	23	1	11.00	0.00	0.00	4.00	7.00	0.00
....................................................................................................................ATGAAGCTAGATTACCAAAGCAT.................................................	23	1	11.00	1.00	0.00	0.00	10.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCGT.................................................	23	1	11.00	0.00	1.00	1.00	9.00	0.00
....................................................................................................................ATAAAGTTAGATTACCAAAGCAT.................................................	23	1	11.00	1.00	0.00	1.00	9.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAA.....................................................	19	1	11.00	1.00	0.00	3.00	7.00	0.00
.....................................................................................................................TGAAGCTAGATTACCAAAGCAT.................................................	22	1	11.00	0.00	0.00	1.00	10.00	0.00
....................................................................................................................ATAACGCTAGATTACCAAAGCAT.................................................	23	1	10.00	0.00	1.00	1.00	8.00	0.00
....................................................................................................................ATAAAGCTAGATTACCACAGCAT.................................................	23	1	10.00	0.00	1.00	1.00	8.00	0.00
.....................................................................................................................TAAAGCTAGATCACCAAAGCAT.................................................	22	1	10.00	0.00	0.00	3.00	7.00	0.00
....................................................................................................................ATAAAGCCAGATTACCAAAGCAT.................................................	23	1	9.00	1.00	0.00	1.00	7.00	0.00
.........................................................TAAGCCCTGCTCTGCTTCT................................................................................................................	19	1	9.00	0.00	0.00	0.00	0.00	9.00
....................................................................................................................ATAAAGCTAGATTACCAAACCAT.................................................	23	1	9.00	0.00	0.00	1.00	8.00	0.00
....................................................................................................................GTAAAGCTAGATTACCAAAGCAT.................................................	23	1	9.00	2.00	2.00	1.00	4.00	0.00
....................................................................................................................ATAAAGCTAGAGTACCAAAGCAT.................................................	23	1	9.00	0.00	0.00	1.00	8.00	0.00
.....................................................................................................................TAAAGCTAGATTACCGAAGCAT.................................................	22	1	9.00	1.00	0.00	2.00	6.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAGGCAT.................................................	23	1	9.00	0.00	0.00	1.00	8.00	0.00
....................................................................................................................ATAGAGCTAGATTACCAAAGCAT.................................................	23	1	9.00	0.00	0.00	2.00	7.00	0.00
.....................................................................................................................TAAAGCTAGACTACCAAAGCAT.................................................	22	1	9.00	0.00	0.00	2.00	7.00	0.00
....................................................................................................................ATACAGCTAGATTACCAAAGCAT.................................................	23	1	9.00	0.00	0.00	0.00	9.00	0.00
.....................................................................................................................TAAAGCTAGATTTCCAAAGCAT.................................................	22	1	8.00	0.00	1.00	0.00	7.00	0.00
....................................................................................................................ATAAAGCTAGGTTACCAAAGCAT.................................................	23	1	8.00	0.00	0.00	1.00	7.00	0.00
.....................................................................................................................TAATGCTAGATTACCAAAGCAT.................................................	22	1	8.00	0.00	0.00	2.00	6.00	0.00
....................................................................................................................ATAAAGGTAGATTACCAAAGCAT.................................................	23	1	8.00	0.00	0.00	1.00	7.00	0.00
.....................................................................................................................CAAAGCTAGATTACCAAAGCAT.................................................	22	1	8.00	0.00	1.00	4.00	3.00	0.00
....................................................................................................................CTAAAGCTAGATTACCAAAGCAT.................................................	23	1	8.00	2.00	0.00	0.00	6.00	0.00
.....................................................................................................................TAAAGCTATATTACCAAAGCAT.................................................	22	1	8.00	0.00	1.00	1.00	6.00	0.00
.....................................................................................................................TAAAGCCAGATTACCAAAGCAT.................................................	22	1	8.00	0.00	0.00	2.00	6.00	0.00
.....................................................................................................................TAAAACTAGATTACCAAAGCAT.................................................	22	1	8.00	0.00	0.00	0.00	8.00	0.00
.....................................................................................................................TAAAGCTAGATTGCCAAAGCAT.................................................	22	1	8.00	0.00	0.00	0.00	8.00	0.00
....................................................................................................................ATAAAGCTAGATCACCAAAGCAT.................................................	23	1	7.00	0.00	0.00	1.00	6.00	0.00
.....................................................................................................................TAAAGCTAGATTACTAAAGCAT.................................................	22	1	7.00	0.00	1.00	0.00	6.00	0.00
.....................................................................................................................TAAAGCTAGATTATCAAAGCAT.................................................	22	1	7.00	1.00	0.00	1.00	5.00	0.00
.....................................................................................................................TAAAGCTAGGTTACCAAAGCAT.................................................	22	1	7.00	0.00	1.00	2.00	4.00	0.00
.....................................................................................................................TAAATCTAGATTACCAAAGCAT.................................................	22	1	7.00	3.00	2.00	0.00	2.00	0.00
.....................................................................................................................AAAAGCTAGATTACCAAAGCAT.................................................	22	1	7.00	2.00	0.00	0.00	5.00	0.00
....................................................................................................................ATAAAGCTATATTACCAAAGCAT.................................................	23	1	7.00	0.00	0.00	1.00	6.00	0.00
....................................................................................................................ATAAAGCTAGATTACTAAAGCAT.................................................	23	1	7.00	0.00	0.00	1.00	6.00	0.00
.....................................................................................................................TAAAGCTAGATTACCCAAGCAT.................................................	22	1	7.00	0.00	0.00	1.00	6.00	0.00
.....................................................................................................................TAAAGCTCGATTACCAAAGCAT.................................................	22	1	7.00	0.00	1.00	1.00	5.00	0.00
.....................................................................................................................TAAAGCTAGATTCCCAAAGCAT.................................................	22	1	7.00	0.00	0.00	3.00	4.00	0.00
.....................................................................................................................TAAAGCTAGAATACCAAAGCAT.................................................	22	1	6.00	0.00	0.00	0.00	6.00	0.00
.....................................................................................................................TAAAGCTAGTTTACCAAAGCAT.................................................	22	1	6.00	0.00	1.00	2.00	3.00	0.00
....................................................................................................................ATAAATCTAGATTACCAAAGCAT.................................................	23	1	6.00	2.00	0.00	1.00	3.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAA......................................................	18	1	6.00	0.00	0.00	0.00	6.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCAG.................................................	22	1	6.00	0.00	0.00	0.00	6.00	0.00
.....................................................................................................................TTAAGCTAGATTACCAAAGCAT.................................................	22	1	6.00	1.00	0.00	0.00	5.00	0.00
......................................................................................................................AAAGCTAGATTACCAAAGCATT................................................	22	1	6.00	0.00	1.00	2.00	3.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAGAGCAT.................................................	23	1	6.00	0.00	0.00	1.00	5.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAATGCAT.................................................	22	1	6.00	0.00	0.00	1.00	5.00	0.00
....................................................................................................................ATAAAGATAGAGTACCAAAGCAT.................................................	23	1	6.00	0.00	0.00	0.00	6.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAGTAT.................................................	23	1	5.00	0.00	0.00	0.00	5.00	0.00

droWil1

GT---------AA-TGGA--------------------TA----------------------ATGGTCTTGCCTATGCTTTGGCGCTTTAGCTGTATGATAGATTTG-ACTACTTCATAAAGCTAGATTACCAAAGCATGGGCT-CTGGCTG-ACTTAATCAACG-C----------AAGTG----TT	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.....................................................................................................................TAAAGCTAGATTACCAAAGCAT.................................................	22	2	7654.50	392.00	4914.50	2341.50	6.50
....................................................................................................................ATAAAGCTAGATTACCAAAGCAT.................................................	23	2	4576.50	175.50	2302.00	2091.50	7.50
............................................................................GCTTTGGCGCTTTAGCTGTATG..........................................................................................	22	2	413.00	1.00	287.50	123.00	1.50
....................................................................................................................ATAAAGCTAGATTACCAAAG....................................................	20	2	375.50	2.00	283.50	89.00	1.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCA..................................................	22	2	282.50	4.00	223.00	55.50	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCA..................................................	21	2	239.00	6.50	157.50	74.50	0.50
.....................................................................................................................TAAAGCTAGATTACCAAAGC...................................................	20	2	172.00	1.50	84.50	72.50	13.50
....................................................................................................................ATAAAGCTAGATTACCAAAGC...................................................	21	2	146.00	0.50	122.00	21.00	2.50
.....................................................................................................................TAAAGCTAGATTACCAAAG....................................................	19	2	85.00	1.00	27.00	56.00	1.00
............................................................................GCTTTGGCGCTTTAGCTGTATGA.........................................................................................	23	2	65.50	0.50	52.50	11.50	1.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCAA.................................................	23	2	46.50	0.50	45.50	0.50	0.00
......................................................................................................................AAAGCTAGATTACCAAAGCAT.................................................	21	2	46.50	1.50	19.50	25.50	0.00
.....................................................................................................................TAAATCTAGATTACCAAAGCAT.................................................	22	2	31.50	1.00	17.50	12.50	0.50
....................................................................................................................ATAAAGCTGGATTACCAAAGCAT.................................................	23	2	30.00	1.00	3.50	25.50	0.00
.....................................................................................................................TAAAGCTAGATTACCAAATCAT.................................................	22	2	26.50	1.00	17.50	8.00	0.00
.....................................................................................................................TAAAGCTAGATTACAAAAGCAT.................................................	22	2	19.00	0.50	9.50	9.00	0.00
.....................................................................................................................TAAAGCTGGATTACCAAAGCAT.................................................	22	2	18.00	1.00	3.50	13.00	0.50
.....................................................................................................................TAAACCTAGATTACCAAAGCAT.................................................	22	2	16.50	1.00	9.00	6.00	0.50
.....................................................................................................................TAAAGCTAGATTACCAAACCAT.................................................	22	2	16.00	0.00	10.00	6.00	0.00
.....................................................................................................................CAAAGCTAGATTACCAAAGCAT.................................................	22	2	15.00	1.00	5.50	8.50	0.00
......................................................................................................................AAAGCTAGATTACCAAAGCATT................................................	22	2	15.00	0.00	9.50	5.50	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGAAT.................................................	22	2	14.50	0.00	6.00	8.50	0.00
.....................................................................................................................TAAAGATAGATTACCAAAGCAT.................................................	22	2	14.50	0.00	8.00	6.50	0.00
....................................................................................................................ATAAATCTAGATTACCAAAGCAT.................................................	23	2	13.50	1.00	7.00	5.50	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGTAT.................................................	22	2	13.00	0.00	5.00	8.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAATCAT.................................................	23	2	13.00	0.00	5.00	8.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAGAAT.................................................	23	2	12.00	0.00	2.50	9.50	0.00
.....................................................................................................................TAAAGCTAGATTAACAAAGCAT.................................................	22	2	12.00	0.00	6.00	6.00	0.00
....................................................................................................................CTAAAGCTAGATTACCAAAGCAT.................................................	23	2	11.50	0.00	2.00	9.50	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAACAT.................................................	22	2	11.00	1.00	3.00	7.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAACCAT.................................................	23	2	10.50	0.00	3.00	7.50	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAGTAT.................................................	23	2	10.00	0.00	1.50	8.50	0.00
.....................................................................................................................TAAAGCTAGATTACCGAAGCAT.................................................	22	2	9.50	1.50	6.00	2.00	0.00
.....................................................................................................................TAAGGCTAGATTACCAAAGCAT.................................................	22	2	9.50	0.00	5.50	4.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAA.....................................................	19	2	9.00	0.00	7.50	1.50	0.00
................................................................................TGGCGCTTAAGTTGTATG..........................................................................................	18	2	9.00	0.00	0.00	9.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCAC.................................................	22	2	8.50	0.00	5.50	3.00	0.00
.....................................................................................................................TAAAGCTAGACTACCAAAGCAT.................................................	22	2	8.50	0.50	5.00	3.00	0.00
.....................................................................................................................TAAAGTTAGATTACCAAAGCAT.................................................	22	2	8.00	1.50	2.50	4.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCAA.................................................	22	2	8.00	0.50	7.00	0.50	0.00
....................................................................................................................ATAAAGCTAGATTAACAAAGCAT.................................................	23	2	7.50	0.00	1.00	6.50	0.00
....................................................................................................................ATAAGGCTAGATTACCAAAGCAT.................................................	23	2	7.50	0.50	4.00	3.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAGAGCAT.................................................	22	2	7.50	0.50	7.00	0.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAGGCAT.................................................	22	2	7.50	0.50	3.00	4.00	0.00
.....................................................................................................................TAAAGCTAGATCACCAAAGCAT.................................................	22	2	7.00	1.00	3.00	3.00	0.00
.....................................................................................................................TAAAGCTAGATTACCACAGCAT.................................................	22	2	6.50	0.00	2.50	4.00	0.00
....................................................................................................................ATAAAGCTAGATTACAAAAGCAT.................................................	23	2	6.50	0.00	2.00	4.50	0.00
.....................................................................................................................TAAAGCCAGATTACCAAAGCAT.................................................	22	2	6.50	0.50	3.00	3.00	0.00
....................................................................................................................ATAAAGCTAGGTTACCAAAGCAT.................................................	23	2	6.50	0.00	4.50	2.00	0.00
.....................................................................................................................TACAGCTAGATTACCAAAGCAT.................................................	22	2	6.50	0.00	3.00	3.50	0.00
....................................................................................................................ATAAAGCTAGATCACCAAAGCAT.................................................	23	2	6.50	0.00	3.00	3.50	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCATT................................................	23	2	6.50	0.50	4.50	1.50	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCATT................................................	24	2	6.00	0.00	3.50	2.50	0.00
.....................................................................................................................TAAAGCTAGATTGCCAAAGCAT.................................................	22	2	6.00	1.00	4.00	1.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCATA................................................	23	2	6.00	0.00	4.50	1.50	0.00
......................................................................................................................TAAGCTAGATTACCAAAGCAT.................................................	21	2	6.00	0.50	3.00	2.50	0.00
....................................................................................................................ATAAAGCCAGATTACCAAAGCAT.................................................	23	2	6.00	0.00	2.50	3.50	0.00
.....................................................................................................................TAAAGCTATATTACCAAAGCAT.................................................	22	2	6.00	0.00	5.00	1.00	0.00
.....................................................................................................................TCAAGCTAGATTACCAAAGCAT.................................................	22	2	6.00	0.00	5.00	1.00	0.00
....................................................................................................................ATAAACCTAGATTACCAAAGCAT.................................................	23	2	6.00	0.00	1.50	4.50	0.00
....................................................................................................................ATAAAGCTAGATTATCAAAGCAT.................................................	23	2	5.50	0.00	2.50	3.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAACGCAT.................................................	22	2	5.50	0.00	2.50	3.00	0.00
....................................................................................................................ATAAAACTAGATTACCAAAGCAT.................................................	23	2	5.50	0.50	1.50	3.50	0.00
....................................................................................................................ATAAAGCTAGATTACCCAAGCAT.................................................	23	2	5.50	0.00	1.50	4.00	0.00
.....................................................................................................................TAAAGCTAGATTATCAAAGCAT.................................................	22	2	5.50	0.00	2.50	3.00	0.00
.....................................................................................................................TGAAGCTAGATTACCAAAGCAT.................................................	22	2	5.50	0.00	3.00	2.50	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCAAA................................................	24	2	5.50	0.00	5.50	0.00	0.00
.....................................................................................................................TAAAGCTAGATTACCxAAGCAT.................................................	21	2	5.00	1.00	3.00	1.00	0.00
.....................................................................................................................TAAAGCTCGATTACCAAAGCAT.................................................	22	2	5.00	0.50	1.00	3.50	0.00
.......................................................................................................................AAGCTAGATTACCAAAGCAT.................................................	20	2	5.00	0.50	1.50	3.00	0.00
.....................................................................................................................ATAAGCTAGATTACCAAAGCAT.................................................	22	2	4.50	0.00	2.50	2.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCCT.................................................	22	2	4.50	0.50	2.50	1.50	0.00
....................................................................................................................ATAAAGCTAGATTACCAAGGCAT.................................................	23	2	4.50	0.00	1.50	3.00	0.00
............................................................................GCTTTGGCGCTTTAGCTGT.............................................................................................	19	2	4.50	0.00	3.00	1.00	0.50
....................................................................................................................ATAAAGCTAGATTACTAAAGCAT.................................................	23	2	4.50	0.00	1.00	3.50	0.00
....................................................................................................................ATAAAGCTAGATTGCCAAAGCAT.................................................	23	2	4.00	0.00	1.50	2.50	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAACAT.................................................	23	2	4.00	0.00	0.50	3.50	0.00
....................................................................................................................ATAAAGCTAGACTACCAAAGCAT.................................................	23	2	4.00	0.00	1.50	2.50	0.00
....................................................................................................................TTAAAGCTAGATTACCAAAGCAT.................................................	23	2	4.00	0.00	0.00	4.00	0.00
.....................................................................................................................TAAAGCTAGGTTACCAAAGCAT.................................................	22	2	4.00	0.00	2.50	1.50	0.00
....................................................................................................................GTAAAGCTAGATTACCAAAGCAT.................................................	23	2	4.00	0.50	1.50	2.00	0.00
.....................................................................................................................GAAAGCTAGATTACCAAAGCAT.................................................	22	2	4.00	0.00	0.50	3.50	0.00
.....................................................................................................................TAAAGCTAGATTACCCAAGCAT.................................................	22	2	4.00	0.00	2.50	1.50	0.00
.....................................................................................................................AAAAGCTAGATTACCAAAGCAT.................................................	22	2	4.00	0.00	1.00	3.00	0.00
.....................................................................................................................TAGAGCTAGATTACCAAAGCAT.................................................	22	2	4.00	0.00	3.00	1.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAGAGCAT.................................................	23	2	4.00	0.00	3.00	1.00	0.00
....................................................................................................................ATAACGCTAGATTACCAAAGCAT.................................................	23	2	4.00	0.00	2.00	2.00	0.00
.....................................................................................................................TAAAACTAGATTACCAAAGCAT.................................................	22	2	4.00	0.00	2.50	1.50	0.00
....................................................................................................................ATAAAGCTGGATTACCAAAG....................................................	20	2	3.50	0.00	0.50	2.50	0.50
.....................................................................................................................TAAAGCTAGATTACCAAAGCGT.................................................	22	2	3.50	0.00	2.50	1.00	0.00
.....................................................................................................................TAAAGCTAAATTACCAAAGCAT.................................................	22	2	3.50	0.00	1.00	2.50	0.00
....................................................................................................................ATCAAGCTAGATTACCAAAGCAT.................................................	23	2	3.50	0.00	1.00	2.50	0.00
.....................................................................................................................TAAAGCTAGATTACTAAAGCAT.................................................	22	2	3.50	0.50	1.50	1.50	0.00
....................................................................................................................ATAAAGCTAGATTACCAACGCAT.................................................	23	2	3.50	0.50	0.50	2.50	0.00
.....................................................................................................................TAAAGCTGGATTACCAAAGCA..................................................	21	2	3.50	0.00	0.00	3.50	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCAC.................................................	23	2	3.50	0.50	0.50	2.50	0.00
......................................................................................................................TAAACTAGATTACCAAAGCAT.................................................	21	2	3.50	0.50	1.50	1.50	0.00
....................................................................................................................ATAAAGATAGATTACCAAAGCAT.................................................	23	2	3.50	0.00	3.00	0.50	0.00
............................................................................GCTTTGGCGCTTTAGCTGTA............................................................................................	20	2	3.50	0.00	2.00	0.00	1.50
....................................................................................................................ATAAAGCTAGATTACCAAAGCATA................................................	24	2	3.00	0.50	2.50	0.00	0.00
....................................................................................................................ATAAAGCTAGAATACCAAAGCAT.................................................	23	2	3.00	0.00	1.00	2.00	0.00

droVir3

ATAGC------CA-G-GAT--------TA-GA---TGAAC----------------------GCCGCACTGCCGTTGCTTTGGCGCTTTAGCTGTATGATAGATTTGAA-TACTTCATAAAGCTAGATTACCAAAGCATTGGCT-C-TGTGG-CCAGC-TTAGCA-A---AGTTGTGAAACG----AT	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.....................................................................................................................TAAAGCTAGATTACCAAAGCAT.................................................	22	1	3990.00	2386.00	1275.00	328.00	0.00	1.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCAT.................................................	23	1	2707.00	1452.00	1102.00	152.00	0.00	1.00
.....................................................................................................................TAAAGCTAGATTACCAAAGC...................................................	20	1	117.00	19.00	72.00	3.00	10.00	13.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCA..................................................	21	1	112.00	38.00	70.00	4.00	0.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCA..................................................	22	1	71.00	26.00	42.00	3.00	0.00	0.00
....................................................................................................................ATAAAGCTGGATTACCAAAGCAT.................................................	23	1	69.00	5.00	64.00	0.00	0.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAGC...................................................	21	1	60.00	4.00	53.00	0.00	1.00	2.00
.....................................................................................................................TAAAGCTGGATTACCAAAGCAT.................................................	22	1	58.00	8.00	50.00	0.00	0.00	0.00
............................................................................GCTTTGGCGCTTTAGCTGTATG..........................................................................................	22	1	57.00	2.00	13.00	42.00	0.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAG....................................................	20	1	34.00	6.00	22.00	4.00	1.00	1.00
......................................................................................................................AAAGCTAGATTACCAAAGCAT.................................................	21	1	30.00	11.00	17.00	2.00	0.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAG....................................................	19	1	27.00	6.00	15.00	1.00	2.00	3.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCATT................................................	23	1	17.00	9.00	8.00	0.00	0.00	0.00
...................................TGAAC----------------------GCCGCACTGCCGTT................................................................................................................	19	1	16.00	0.00	0.00	0.00	3.00	13.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCATT................................................	24	1	14.00	7.00	5.00	2.00	0.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCATC................................................	23	1	11.00	11.00	0.00	0.00	0.00	0.00
....................................................................................................................ATAAAGATAGATTACCAAAGCAT.................................................	23	1	11.00	1.00	8.00	2.00	0.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCAC.................................................	22	1	10.00	1.00	6.00	2.00	0.00	1.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCCT.................................................	23	1	10.00	1.00	4.00	5.00	0.00	0.00
....................................................................................................................ATAAAGCTAGATTACAAAAGCAT.................................................	23	1	10.00	1.00	8.00	1.00	0.00	0.00
.....................................................................................................................TAAAGCTAGAGTACCAAAGCAT.................................................	22	1	9.00	0.00	9.00	0.00	0.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAATCAT.................................................	23	1	9.00	1.00	5.00	3.00	0.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCATC................................................	24	1	9.00	8.00	0.00	1.00	0.00	0.00
....................................................................................................................ATAAAGCTGGATTACCAAAGCA..................................................	22	1	8.00	1.00	7.00	0.00	0.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAGGCAT.................................................	22	1	8.00	4.00	4.00	0.00	0.00	0.00
............................................................................GCTTTGGCGCTTTAGCTGTATGA.........................................................................................	23	1	8.00	1.00	3.00	4.00	0.00	0.00
....................................................................................................................ATAAAGCTGGATTACCAAAG....................................................	20	1	8.00	1.00	5.00	0.00	0.00	2.00
.....................................................................................................................TAAAGCTAGATTACAAAAGCAT.................................................	22	1	8.00	4.00	4.00	0.00	0.00	0.00
....................................................................................................................ATAAAGCTAGACTACCAAAGCAT.................................................	23	1	8.00	2.00	2.00	4.00	0.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAACCAT.................................................	22	1	7.00	5.00	2.00	0.00	0.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCCT.................................................	22	1	7.00	1.00	4.00	2.00	0.00	0.00
.....................................................................................................................TAAGGCTAGATTACCAAAGCAT.................................................	22	1	7.00	2.00	4.00	1.00	0.00	0.00
.....................................................................................................................TAAACCTAGATTACCAAAGCAT.................................................	22	1	7.00	6.00	1.00	0.00	0.00	0.00
....................................................................................................................AGAAAGCTAGATTACCAAAGCAT.................................................	23	1	7.00	0.00	7.00	0.00	0.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAATCAT.................................................	22	1	6.00	5.00	1.00	0.00	0.00	0.00
.....................................................................................................................TAAAGCTAGATTACCACAGCAT.................................................	22	1	6.00	1.00	3.00	2.00	0.00	0.00
....................................................................................................................ATGAAGCTAGATTACCAAAGCAT.................................................	23	1	6.00	3.00	2.00	1.00	0.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAACGCAT.................................................	23	1	6.00	1.00	5.00	0.00	0.00	0.00
.....................................................................................................................TAAAGCTAGATGACCAAAGCAT.................................................	22	1	6.00	1.00	5.00	0.00	0.00	0.00
.....................................................................................................................TAAAGCTGGATTACCAAAGCA..................................................	21	1	6.00	0.00	6.00	0.00	0.00	0.00
....................................................................................................................ATAAAGCTAGCTTACCAAAGCAT.................................................	23	1	6.00	1.00	4.00	1.00	0.00	0.00
......................................................................................................................AAAGCTAGATTACCAAAGCATT................................................	22	1	6.00	1.00	4.00	1.00	0.00	0.00
....................................................................................................................ATAAAGCTAGAGTACCAAAGCAT.................................................	23	1	6.00	1.00	5.00	0.00	0.00	0.00
.....................................................................................................................TAAAGCTAGATTAACAAAGCAT.................................................	22	1	5.00	1.00	4.00	0.00	0.00	0.00
.....................................................................................................................TAAATCTAGATTACCAAAGCAT.................................................	22	1	5.00	4.00	1.00	0.00	0.00	0.00
.....................................................................................................................CAAAGCTAGATTACCAAAGCAT.................................................	22	1	5.00	2.00	3.00	0.00	0.00	0.00
....................................................................................................................ATAAACCTAGATTACCAAAGCAT.................................................	23	1	5.00	2.00	2.00	1.00	0.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAGGCAT.................................................	23	1	5.00	2.00	3.00	0.00	0.00	0.00
............................................................................GCTTTGGCGCTTTAGCTGTATT..........................................................................................	22	1	5.00	0.00	0.00	5.00	0.00	0.00
.....................................................................................................................TAAAGCTACATTACCAAAGCAT.................................................	22	1	5.00	0.00	3.00	2.00	0.00	0.00
....................................................................................................................ATAAAGCTAGGTTACCAAAGCAT.................................................	23	1	5.00	1.00	4.00	0.00	0.00	0.00
.....................................................................................................................TAAAGCTAGATTACCGAAGCAT.................................................	22	1	5.00	0.00	3.00	2.00	0.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAGTAT.................................................	23	1	5.00	1.00	4.00	0.00	0.00	0.00
.....................................................................................................................TAAAGCTAGATCACCAAAGCAT.................................................	22	1	5.00	1.00	3.00	1.00	0.00	0.00
....................................................................................................................ATAAAGCTGGATTACCAAAGC...................................................	21	1	5.00	0.00	3.00	0.00	0.00	2.00
....................................................................................................................ATAAAGCTAGATTACCAAACCAT.................................................	23	1	5.00	1.00	3.00	1.00	0.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGAAT.................................................	22	1	4.00	3.00	1.00	0.00	0.00	0.00
.....................................................................................................................TAAAGCTGGATTACCAAAGC...................................................	20	1	4.00	0.00	4.00	0.00	0.00	0.00
....................................................................................................................ATAAAGCTAGATTACCATAGCAT.................................................	23	1	4.00	0.00	4.00	0.00	0.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCGT.................................................	22	1	4.00	1.00	2.00	1.00	0.00	0.00
....................................................................................................................TTAAAGCTAGATTACCAAAGCAT.................................................	23	1	4.00	1.00	3.00	0.00	0.00	0.00
.....................................................................................................................TAAAGCTAGATTATCAAAGCAT.................................................	22	1	4.00	2.00	2.00	0.00	0.00	0.00
.....................................................................................................................TAGAGCTGGATTACCAAAGCAT.................................................	22	1	4.00	0.00	4.00	0.00	0.00	0.00
....................................................................................................................ATAAAGCTAGATTACTAAAGCAT.................................................	23	1	4.00	2.00	2.00	0.00	0.00	0.00
.....................................................................................................................TAAAGCGAGATTACCAAAGCAT.................................................	22	1	4.00	0.00	4.00	0.00	0.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCAA.................................................	23	1	4.00	3.00	0.00	1.00	0.00	0.00
....................................................................................................................ATAGAGCTAGATTACCAAAGCAT.................................................	23	1	4.00	1.00	2.00	1.00	0.00	0.00
.....................................................................................................................ATAAGCTAGATTACCAAAGCAT.................................................	22	1	4.00	3.00	1.00	0.00	0.00	0.00
....................................................................................................................ATAAATCTAGATTACCAAAGCAT.................................................	23	1	4.00	3.00	1.00	0.00	0.00	0.00
....................................................................................................................ATAAAACTAGATTACCAAAGCAT.................................................	23	1	4.00	1.00	3.00	0.00	0.00	0.00
.....................................................................................................................TAAAGCTAGATTACCCAAGCAT.................................................	22	1	4.00	2.00	1.00	1.00	0.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCTT.................................................	22	1	4.00	0.00	4.00	0.00	0.00	0.00
....................................................................................................................ATAAAGCTAGATTACCACAGCAT.................................................	23	1	4.00	0.00	4.00	0.00	0.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAGAAT.................................................	23	1	4.00	1.00	3.00	0.00	0.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCTT.................................................	23	1	3.00	0.00	3.00	0.00	0.00	0.00
.....................................................................................................................TAAAGCTAGATAACCAAAGCAT.................................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
.....................................................................................................................TAAAGCTAGATTACCATAGCAT.................................................	22	1	3.00	1.00	2.00	0.00	0.00	0.00
....................................................................................................................ATAAAGCTAGATTAACAAAGCAT.................................................	23	1	3.00	0.00	3.00	0.00	0.00	0.00
.....................................................................................................................TAAAGCCAGATTACCAAAGCAT.................................................	22	1	3.00	0.00	2.00	1.00	0.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAA.....................................................	19	1	3.00	1.00	2.00	0.00	0.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCGT.................................................	23	1	3.00	1.00	2.00	0.00	0.00	0.00
....................................................................................................................................AAAGGATTGGCT-C-TGAGG-...................................	18	1	3.00	0.00	0.00	0.00	1.00	2.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCAG.................................................	22	1	3.00	0.00	2.00	1.00	0.00	0.00
....................................................................................................................ATAAAGATAGATTACCAAACCAT.................................................	23	1	3.00	0.00	3.00	0.00	0.00	0.00
....................................................................................................................ATAAAGCTAGATCACCAAAGCAT.................................................	23	1	3.00	0.00	3.00	0.00	0.00	0.00
......................................................................................................................AAAGCTAGATTACCAAAGCA..................................................	20	1	3.00	0.00	3.00	0.00	0.00	0.00
....................................................................................................................ATAAAGCTAGATTACCGAAGCAT.................................................	23	1	3.00	0.00	3.00	0.00	0.00	0.00
....................................................................................................................ATACAGCTAGATTACCAAAGCAT.................................................	23	1	3.00	0.00	3.00	0.00	0.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAACAT.................................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
....................................................................................................................ATAAAGCTAGATTACCCAAGCAT.................................................	23	1	3.00	1.00	1.00	1.00	0.00	0.00
.....................................................................................................................TAAAACTAGATTACCAAAGCAT.................................................	22	1	3.00	0.00	2.00	1.00	0.00	0.00
....................................................................................................................ATAAAGCTAGATTCCCAAAGCAT.................................................	23	1	3.00	1.00	2.00	0.00	0.00	0.00
.....................................................................................................................TAAAGCTAGATTCCCAAAGCAT.................................................	22	1	3.00	1.00	1.00	1.00	0.00	0.00
.....................................................................................................................TAAAGCTAGACTACCAAAGCAT.................................................	22	1	3.00	0.00	3.00	0.00	0.00	0.00
.....................................................................................................................TAAAGATAGATTACCAAAGCAT.................................................	22	1	3.00	0.00	3.00	0.00	0.00	0.00
....................................................................................................................ATAAGGCTAGATTACCAAAGCAT.................................................	23	1	3.00	1.00	2.00	0.00	0.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAATGCAT.................................................	22	1	3.00	0.00	3.00	0.00	0.00	0.00
......................................................................................................................AAAGCTGGATTACCAAAGCATT................................................	22	1	3.00	0.00	3.00	0.00	0.00	0.00
.....................................................................................................................TAAAGCTATATTACCAAAGCAT.................................................	22	1	3.00	0.00	2.00	1.00	0.00	0.00
.....................................................................................................................TAAAGCTAGATTGCCAAAGCAT.................................................	22	1	3.00	1.00	2.00	0.00	0.00	0.00
.....................................................................................................................TAACGCTAGATTACCAAAGCAT.................................................	22	1	3.00	0.00	2.00	1.00	0.00	0.00

droMoj3

AGTGTCTTGT-AATGTAAACGTGTTTTTA-AATA--T-TC----------------------GCCCCATTGCCGTTGCTTTGGCGCTTTAGCTGTATGATAGATTTAAA-TACTTCATAAAGCTAGATTACCAAAGCATTGGCT-C-TGTGG--CCAA-ACCCCA-GCGAACTTGTGAAATA----AT	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.....................................................................................................................TAAAGCTAGATTACCAAAGCAT.................................................	22	1	6959.00	2492.00	2761.00	977.00	729.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCAT.................................................	23	1	4429.00	1305.00	2044.00	682.00	398.00
............................................................................GCTTTGGCGCTTTAGCTGTATG..........................................................................................	22	1	159.00	20.00	14.00	9.00	116.00
....................................................................................................................ATAAAGCTGGATTACCAAAGCAT.................................................	23	1	143.00	5.00	106.00	32.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCA..................................................	21	1	132.00	17.00	74.00	31.00	10.00
.....................................................................................................................TAAAGCTGGATTACCAAAGCAT.................................................	22	1	123.00	8.00	87.00	28.00	0.00
......................................................................................................................AAAGCTAGATTACCAAAGCAT.................................................	21	1	102.00	23.00	51.00	25.00	3.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCA..................................................	22	1	79.00	9.00	48.00	17.00	5.00
.....................................................................................................................TAAAGCTAGATTACCAAAGC...................................................	20	1	72.00	17.00	28.00	13.00	14.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCATT................................................	23	1	33.00	10.00	5.00	5.00	13.00
......................................................................................................................AAAGCTAGATTACCAAAGCATT................................................	22	1	32.00	3.00	18.00	7.00	4.00
.....................................................................................................................TAAAGCTAGATTACCACAGCAT.................................................	22	1	28.00	0.00	9.00	15.00	4.00
....................................................................................................................ATAAAGCTAGATTACCAAAG....................................................	20	1	24.00	9.00	13.00	2.00	0.00
.....................................................................................................................TAAGGCTAGATTACCAAAGCAT.................................................	22	1	22.00	1.00	14.00	7.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCCT.................................................	23	1	22.00	0.00	4.00	17.00	1.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCCT.................................................	22	1	21.00	0.00	1.00	19.00	1.00
............................................................................GCTTTGGCGCTTTAGCTGTATGA.........................................................................................	23	1	18.00	2.00	3.00	4.00	9.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCATC................................................	23	1	18.00	11.00	6.00	1.00	0.00
.....................................................................................................................TAAAGCTAGATTACCCAAGCAT.................................................	22	1	17.00	2.00	6.00	9.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAACGCAT.................................................	22	1	17.00	0.00	6.00	8.00	3.00
....................................................................................................................ATAAAGCTAGATTACCCAAGCAT.................................................	23	1	17.00	0.00	2.00	10.00	5.00
.....................................................................................................................TAAAGCTAGATTACCAAAG....................................................	19	1	14.00	4.00	6.00	4.00	0.00
.....................................................................................................................TAAAGCTAGATTAACAAAGCAT.................................................	22	1	14.00	1.00	6.00	5.00	2.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCATC................................................	24	1	14.00	11.00	2.00	1.00	0.00
....................................................................................................................ATAAAGCTAGATTACCACAGCAT.................................................	23	1	14.00	0.00	6.00	5.00	3.00
.....................................................................................................................TAAAGCTAGAGTACCAAAGCAT.................................................	22	1	13.00	0.00	10.00	2.00	1.00
.....................................................................................................................TAAAGCTAGATTACCAAATCAT.................................................	22	1	12.00	5.00	5.00	2.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGTAT.................................................	22	1	11.00	3.00	4.00	0.00	4.00
....................................................................................................................ATAAAGCTAGATTAACAAAGCAT.................................................	23	1	11.00	0.00	5.00	5.00	1.00
.....................................................................................................................TAAAGCTAGATGACCAAAGCAT.................................................	22	1	11.00	0.00	8.00	2.00	1.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCTT.................................................	22	1	11.00	0.00	8.00	3.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAATCAT.................................................	23	1	11.00	1.00	2.00	8.00	0.00
.....................................................................................................................TAAAGCTAGATTACAAAAGCAT.................................................	22	1	11.00	3.00	5.00	3.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCGT.................................................	22	1	11.00	0.00	6.00	4.00	1.00
.....................................................................................................................TAAAGCTAGATTGCCAAAGCAT.................................................	22	1	10.00	2.00	6.00	1.00	1.00
.....................................................................................................................TAAAGCTAGATTACCAAGGCAT.................................................	22	1	10.00	1.00	7.00	2.00	0.00
....................................................................................................................ATAAAGATAGATTACCAAAGCAT.................................................	23	1	10.00	2.00	6.00	1.00	1.00
.....................................................................................................................TAAAGCTGGATTACCAAAGCA..................................................	21	1	9.00	0.00	5.00	4.00	0.00
.....................................................................................................................TAAAGCTAGATTACCATAGCAT.................................................	22	1	9.00	0.00	8.00	1.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCTT.................................................	23	1	9.00	0.00	7.00	1.00	1.00
....................................................................................................................ATAAAGCTAGATTACCAAAGTAT.................................................	23	1	9.00	2.00	4.00	2.00	1.00
.....................................................................................................................TAAAGCTAGATTACCAAACCAT.................................................	22	1	9.00	3.00	5.00	0.00	1.00
.....................................................................................................................CAAAGCTAGATTACCAAAGCAT.................................................	22	1	9.00	2.00	3.00	1.00	3.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCAC.................................................	23	1	9.00	1.00	8.00	0.00	0.00
.....................................................................................................................TAAAGCTAGCTTACCAAAGCAT.................................................	22	1	9.00	0.00	7.00	1.00	1.00
.....................................................................................................................TAAAGCTAGATTACCGAAGCAT.................................................	22	1	8.00	2.00	3.00	1.00	2.00
....................................................................................................................ATAAAGCTAGACTACCAAAGCAT.................................................	23	1	8.00	0.00	6.00	2.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAGAGCAT.................................................	23	1	8.00	1.00	6.00	1.00	0.00
....................................................................................................................ATACAGCTAGATTACCAAAGCAT.................................................	23	1	8.00	0.00	6.00	2.00	0.00
....................................................................................................................ATAAAGCTGGATTACCAAAGCA..................................................	22	1	8.00	0.00	7.00	1.00	0.00
.....................................................................................................................TAAAGCGAGATTACCAAAGCAT.................................................	22	1	8.00	0.00	8.00	0.00	0.00
....................................................................................................................ATAAAGCTACATTACCAAAGCAT.................................................	23	1	7.00	0.00	4.00	3.00	0.00
....................................................................................................................ATAGAGCTAGATTACCAAAGCAT.................................................	23	1	7.00	0.00	4.00	2.00	1.00
.....................................................................................................................TAAAGATAGATTACCAAAGCAT.................................................	22	1	7.00	1.00	6.00	0.00	0.00
....................................................................................................................ATAAAGCTAGATTACAAAAGCAT.................................................	23	1	7.00	0.00	7.00	0.00	0.00
....................................................................................................................ATAAAGCTAGCTTACCAAAGCAT.................................................	23	1	7.00	0.00	4.00	2.00	1.00
.....................................................................................................................TAAAGCTAGATCACCAAAGCAT.................................................	22	1	7.00	0.00	5.00	1.00	1.00
....................................................................................................................ATAAAGCTAGATTACCAAGGCAT.................................................	23	1	7.00	1.00	4.00	1.00	1.00
....................................................................................................................ATAAAGCTAGAGTACCAAAGCAT.................................................	23	1	7.00	0.00	4.00	3.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAGC...................................................	21	1	7.00	2.00	4.00	1.00	0.00
.....................................................................................................................TAGAGCTAGATTACCAAAGCAT.................................................	22	1	7.00	1.00	5.00	0.00	1.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCAC.................................................	22	1	7.00	2.00	4.00	0.00	1.00
.....................................................................................................................TAAAACTAGATTACCAAAGCAT.................................................	22	1	7.00	2.00	3.00	2.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCATT................................................	24	1	7.00	0.00	4.00	2.00	1.00
....................................................................................................................ACAAAGCTAGATTACCAAAGCAT.................................................	23	1	6.00	0.00	5.00	1.00	0.00
....................................................................................................................ATAAATCTAGATTACCAAAGCAT.................................................	23	1	6.00	3.00	0.00	1.00	2.00
....................................................................................................................ATAAGGCTAGATTACCAAAGCAT.................................................	23	1	6.00	0.00	3.00	2.00	1.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCATA................................................	23	1	6.00	1.00	2.00	0.00	3.00
....................................................................................................................ATAAAGCCAGATTACCAAAGCAT.................................................	23	1	6.00	1.00	4.00	1.00	0.00
.....................................................................................................................TAAAGCTAGGTTACCAAAGCAT.................................................	22	1	6.00	1.00	2.00	1.00	2.00
.....................................................................................................................TAAATCTAGATTACCAAAGCAT.................................................	22	1	6.00	4.00	1.00	1.00	0.00
....................................................................................................................ATAAAGCTAGGTTACCAAAGCAT.................................................	23	1	6.00	2.00	3.00	0.00	1.00
.....................................................................................................................TAAAGCTTGATTACCAAAGCAT.................................................	22	1	6.00	1.00	0.00	4.00	1.00
.....................................................................................................................TAAAGCTAGATTACCTAAGCAT.................................................	22	1	6.00	0.00	4.00	0.00	2.00
....................................................................................................................ATAAAGCTAGATTACTAAAGCAT.................................................	23	1	6.00	1.00	3.00	2.00	0.00
.....................................................................................................................TAACGCTAGATTACCAAAGCAT.................................................	22	1	5.00	1.00	3.00	1.00	0.00
.....................................................................................................................TAATGCTAGATTACCAAAGCAT.................................................	22	1	5.00	0.00	4.00	0.00	1.00
....................................................................................................................ATAAAGCTAGATTATCAAAGCAT.................................................	23	1	5.00	2.00	1.00	1.00	1.00
.....................................................................................................................TAAGGCTGGATTACCAAAGCAT.................................................	22	1	5.00	0.00	4.00	1.00	0.00
.....................................................................................................................TAAAGCTAGATTATCAAAGCAT.................................................	22	1	5.00	0.00	2.00	0.00	3.00
......................................................................................................................AAAGCTGGATTACCAAAGCAT.................................................	21	1	5.00	1.00	4.00	0.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCAG.................................................	22	1	5.00	0.00	2.00	2.00	1.00
.....................................................................................................................GAAAGCTAGATTACCAAAGCAT.................................................	22	1	5.00	0.00	5.00	0.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCGT.................................................	23	1	5.00	0.00	5.00	0.00	0.00
.....................................................................................................................TAAAGCTATATTACCAAAGCAT.................................................	22	1	5.00	3.00	1.00	1.00	0.00
....................................................................................................................AGAAAGCTAGATTACCAAAGCAT.................................................	23	1	5.00	0.00	3.00	2.00	0.00
.....................................................................................................................TAAAGCTAGTTTACCAAAGCAT.................................................	22	1	5.00	0.00	3.00	1.00	1.00
.....................................................................................................................TAAAGCTAGATTTCCAAAGCAT.................................................	22	1	5.00	0.00	1.00	3.00	1.00
....................................................................................................................ATAAAGCTAGATTACCAAAGAAT.................................................	23	1	5.00	0.00	2.00	2.00	1.00
....................................................................................................................ATGAAGCTAGATTACCAAAGCAT.................................................	23	1	5.00	0.00	4.00	0.00	1.00
.....................................................................................................................TAAAGCTAGACTACCAAAGCAT.................................................	22	1	4.00	1.00	1.00	2.00	0.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCAA.................................................	22	1	4.00	1.00	2.00	0.00	1.00
......................................................................................................................AAAGCTGGATTACCAAAGCATT................................................	22	1	4.00	0.00	2.00	2.00	0.00
....................................................................................................................ATAAAGCTAGATCACCAAAGCAT.................................................	23	1	4.00	1.00	3.00	0.00	0.00
....................................................................................................................ATAAAGCTAGATTGCCAAAGCAT.................................................	23	1	4.00	0.00	4.00	0.00	0.00
....................................................................................................................GTAAAGCTAGATTACCAAAGCAT.................................................	23	1	4.00	1.00	1.00	1.00	1.00
.....................................................................................................................TAAAGCTAGATTACCAAAACAT.................................................	22	1	4.00	0.00	2.00	2.00	0.00
.....................................................................................................................TAAAGCTCGATTACCAAAGCAT.................................................	22	1	4.00	0.00	1.00	3.00	0.00
....................................................................................................................ATAAAGCTAGTTTACCAAAGCAT.................................................	23	1	4.00	0.00	4.00	0.00	0.00
.....................................................................................................................TAAAGCTAGATGACAAAAGCAT.................................................	22	1	4.00	0.00	4.00	0.00	0.00
....................................................................................................................ATAAAGCTAGATTACCAAAACAT.................................................	23	1	4.00	1.00	2.00	0.00	1.00

droGri2

ATTT------AAA-GTGCT--------TC-TT-CTTG-GT----------------------GCCACATTGCCGTCGCTTTGGCGCTTTAGCTGTATGATAGATTTGAA-TACTTCATAAAGCTAGATTACCAAAGCATCGGCG-CCTGTGG-CCAG---CTTAA-C----------AAACG----TT	Size	Hit Count	Total Norm	V109 Male body
.....................................................................................................................TAAAGCTAGATTACCAAAGCAT.................................................	22	1	1336.00	1336.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCAT.................................................	23	1	641.00	641.00
.....................................................................................................................TAAAGCTAGATTACCAACGCAT.................................................	22	1	22.00	22.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCA..................................................	22	1	15.00	15.00
....................................................................................................................ATAAAGCTAGATTACCACAGCAT.................................................	23	1	14.00	14.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCA..................................................	21	1	13.00	13.00
....................................................................................................................ATAAAGCTAGATTACCAAAGC...................................................	21	1	9.00	9.00
.....................................................................................................................TAAAGCTAGATTACCAATGCAT.................................................	22	1	8.00	8.00
.....................................................................................................................TAAAGCTAGATTACCAAAGC...................................................	20	1	7.00	7.00
............................................................................GCTTTGGCGCTTTAGCTGTATG..........................................................................................	22	1	7.00	7.00
.....................................................................................................................TACAGCTAGATTACCAAAGCAT.................................................	22	1	6.00	6.00
.....................................................................................................................TAAAGCCAGATTACCAAAGCAT.................................................	22	1	6.00	6.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCAC.................................................	23	1	6.00	6.00
......................................................................................................................AAAGCTAGATTACCAAAGCAT.................................................	21	1	5.00	5.00
.....................................................................................................................TAAAGCTGGATTACCAAAGCAT.................................................	22	1	5.00	5.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCAG.................................................	23	1	5.00	5.00
.....................................................................................................................TAAAGCTACATTACCAAAGCAT.................................................	22	1	5.00	5.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCAA.................................................	23	1	4.00	4.00
.....................................................................................................................TAAAGATAGATTACCAAAGCAT.................................................	22	1	4.00	4.00
....................................................................................................................ATAAAGCTAGATTACCAAAG....................................................	20	1	4.00	4.00
.....................................................................................................................TAAAGCTAGATTACCAAGGCAT.................................................	22	1	4.00	4.00
....................................................................................................................ATAAAGCTAGATTACCATAGCAT.................................................	23	1	3.00	3.00
.....................................................................................................................TAAACCTAGATTACCAAAGCAT.................................................	22	1	3.00	3.00
.....................................................................................................................TAAAGCGAGATTACCAAAGCAT.................................................	22	1	3.00	3.00
....................................................................................................................ATAACGCTAGATTACCAAAGCAT.................................................	23	1	3.00	3.00
.....................................................................................................................TAAAGGTAGATTACCAAAGCAT.................................................	22	1	3.00	3.00
....................................................................................................................ATAAAGATAGATTACCAAAGCAT.................................................	23	1	3.00	3.00
.....................................................................................................................TAGAGCTAGATTACCAAAGCAT.................................................	22	1	3.00	3.00
............................................................................GCTTTGGCGCTTTAGCTGTATGA.........................................................................................	23	1	2.00	2.00
....................................................................................................................ATAAAGCTAGATTACCAGAGCAT.................................................	23	1	2.00	2.00
.....................................................................................................................TAAAGCTAGATCACCAAAGCAT.................................................	22	1	2.00	2.00
.....................................................................................................................TAACGCTAGATTACCAAAGCAT.................................................	22	1	2.00	2.00
.....................................................................................................................AAAAGCTAGATTACCAAAGCAT.................................................	22	1	2.00	2.00
.....................................................................................................................TAAAGCTAGATTACCCAAGCAT.................................................	22	1	2.00	2.00
....................................................................................................................ATAAACCTAGATTACCAAAGCAT.................................................	23	1	2.00	2.00
.....................................................................................................................TAAAGCTAGATTCCCAAAGCAT.................................................	22	1	2.00	2.00
.....................................................................................................................TAAAGCTAGATTATCAAAGCAT.................................................	22	1	2.00	2.00
.....................................................................................................................TATAGCTAGATTACCAAAGCAT.................................................	22	1	2.00	2.00
....................................................................................................................ATAAAGCTAGATTAGCAAAGCAT.................................................	23	1	2.00	2.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCAC.................................................	22	1	2.00	2.00
....................................................................................................................ATAAAGCTAGATTACCAAAGAAT.................................................	23	1	2.00	2.00
....................................................................................................................ATAAATCTAGATTACCAAAGCAT.................................................	23	1	2.00	2.00
....................................................................................................................CTAAAGCTAGATTACCAAAGCAT.................................................	23	1	2.00	2.00
.....................................................................................................................TAAAGCTAGATTAACAAAGCAT.................................................	22	1	2.00	2.00
....................................................................................................................ATAAAGCTGGATTACCAAAGCAT.................................................	23	1	2.00	2.00
.....................................................................................................................TAAAGCTAGATTACCAAACCAT.................................................	22	1	1.00	1.00
....................................................................................................................ATAAATCTAGATTACCAAAGCA..................................................	22	1	1.00	1.00
....................................................................................................................ATCACGCTAGATTACCAAAGCAT.................................................	23	1	1.00	1.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCATCC...............................................	24	1	1.00	1.00
.....................................................................................................................TAAAGCTAGATTACCAAAGTAT.................................................	22	1	1.00	1.00
.....................................................................................................................TAAAGCTxxATTACCAAAGCAT.................................................	20	1	1.00	1.00
.....................................................................................................................TAAAGCTAGGTTACCAAAGCAT.................................................	22	1	1.00	1.00
......................................................................................................................AACGCTAGATTACCAAAGCAT.................................................	21	1	1.00	1.00
....................................................................................................................ATAAAGCTCGATTACCAAAGCAT.................................................	23	1	1.00	1.00
....................................................................................................................ATAAAGCTAGAATACCAAAGCAT.................................................	23	1	1.00	1.00
....................................................................................................................ATAAAGCTAGATTACCAAAxCAT.................................................	22	1	1.00	1.00
....................................................................................................................ATAAAGTTAGATTACCAAAGCAT.................................................	23	1	1.00	1.00
....................................................................................................................ATAAAGCTAGATTACCAAAACAT.................................................	23	1	1.00	1.00
.....................................................................................................................TAAAGCTAGATTACCAAAxCAT.................................................	21	1	1.00	1.00
.....................................................................................................................TAAAGCTAGATTACCxAAGCAT.................................................	21	1	1.00	1.00
.....................................................................................................................TAAAGCTATATTACCAAAGCAT.................................................	22	1	1.00	1.00
.....................................................................................................................TAAATCTAGATTACCAAAGCA..................................................	21	1	1.00	1.00
......................................................................................................................AAAGCTAGATTACCAAAGCATT................................................	22	1	1.00	1.00
.....................................................................................................................TAAAGCTAGATTACCAAAACAT.................................................	22	1	1.00	1.00
....................................................................................................................GTAAAGCTAGATTACCAAAGCAT.................................................	23	1	1.00	1.00
....................................................................................................................ATAAAACTAGATTACCAAAGCAT.................................................	23	1	1.00	1.00
....................................................................................................................ATCAAGCTAGATTACCAAAGCAT.................................................	23	1	1.00	1.00
.....................................................................................................................TAAAGCTAGATTACCAAAC....................................................	19	1	1.00	1.00
............................................................................GCATTGGCGCTTTAGCTGTATG..........................................................................................	22	1	1.00	1.00
.....................................................................................................................CAAAGCTAGATTACCAAAGCAT.................................................	22	1	1.00	1.00
.................................................................................................................ATCATAAAGCTAGATTACCAAAGCAT.................................................	26	1	1.00	1.00
....................................................................................................................ATAAAGCTTGATTACCAAAGCAT.................................................	23	1	1.00	1.00
.....................................................................................................................TAAAGCTAGATTACCAAAG....................................................	19	1	1.00	1.00
.....................................................................................................................TAAAGCTAGCTTACCAAACCAT.................................................	22	1	1.00	1.00
....................................................................................................................ATACAGCTAGATTACCAAAGCAT.................................................	23	1	1.00	1.00
.....................................................................................................................TAAAGCTAGATTACCAAAGAAT.................................................	22	1	1.00	1.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCATT................................................	24	1	1.00	1.00
.....................................................................................................................TAAAGCTAAATTACCAAAGCAT.................................................	22	1	1.00	1.00
.....................................................................................................................TAAATCTAGATTACCAAAGCAT.................................................	22	1	1.00	1.00
.....................................................................................................................TAAAGCTAGATTACCAAAGCATT................................................	23	1	1.00	1.00
.....................................................................................................................TATAGCTAGCTTACCAAAGCAT.................................................	22	1	1.00	1.00
.....................................................................................................................TAAAGTTAGATTACCAAAGCAT.................................................	22	1	1.00	1.00
.....................................................................................................................TAAAGCTAGATTACCAGAGCAT.................................................	22	1	1.00	1.00
....................................................................................................................ACAAAGCTAGATTACCAAAGCAT.................................................	23	1	1.00	1.00
.....................................................................................................................TAAGGCTAGATTACCAAAGCAT.................................................	22	1	1.00	1.00
....................................................................................................................ATAAAxCTAGATTACCAAAGCAT.................................................	22	1	1.00	1.00
....................................................................................................................ATAAAGCTAGATTACCAAAGCT..................................................	22	1	1.00	1.00
................................................................................TGGCGCTTAAGTTGTATG..........................................................................................	18	1	1.00	1.00

Generated: 04/20/2012 at 05:31:52 EDT

dme-mir-79

chr2L:16698554-16698650 +

Known_mirbase

intron

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Legend

Re-alignment after removal of non-confident orthologs

20-way Secondary Structure

Small RNA-seq read pileup