dme-mir-4985- 12- and 20-way alignments

dme-mir-4985	chr2R:20181753-20181854 +	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intron

Legend:

   mature strand at position 20181782-20181803
   star strand at position 20181818-20181839
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chr2R:20181738-20181869 +	ATA--------------AAAAGTATGTCAC---------------T----TGGGG-GCGCTGCAC---------TGGCATTGAAA-AGTGAATTACATTGATCGTGACATGGGAATGGA--A----AATGTCG--CCG----------------------------------------------------------------------------AGCCATGTAAATCGTTTGGCCTACCCGTCTaccagcc----aaccaacca
droSim1	chr2R:18643325-18643449 +	ATA--------------AAAAGTATGTCAC---------------TTGGTG-GGG-GCGCTGCAC---------TGGCATTGAAA-AGTGAATTACATTGATCGTGACATGGGGATGGA--A----AATGCCG--CCG----------------------------------------------------------------------------AGCCATGTAAATCGATTGAAG-------------GCC-CGTGGccaacca
droSec1	super_23:61187-61303 +	ATA--------------AAAAGTATGTCAC---------------TTGGTG-GGG-GCGCTGCAC---------TGGCATTGAAA-AGTGAATTACATTGATCGTGACATGGGGATGGA--A----AATGTCG--CCG----------------------------------------------------------------------------AGCCATGTAAATCGATTGAAG-------------GCC-CGT--------G
droYak2	chr2R:20147877-20148011 +	ATA--------------AAAAGTATGTCAC---------------T----GGGGG-GCGCTGCAC---------TGGCACTGAAA-AGTGAATTACATTGATCGTGACATGGGGATGCG--A----AATGTCG--CCA--------------AACGAAA-------------------------------------AAATAA-------ATCATA---GTGTAACTCGTTTGAAG-------------GCCAC---ACCAACTA
droEre2	scaffold_4845:21546843-21546976 +	ATA--------------AAAAGTATGTCAC---------------T----AGGGGGCTTCTGCAC---------TGGCATTGAAA-AGTGAATTACATTGATCGTGACATGGGGATGGA--A----AATGTCG--CCG--------------CACAAAAAA------------------------------------------------AGTGTA---GTGTAAATCGTTTGAAG-------------GCC-CATGGCCAACCA
droAna3	scaffold_13266:14229911-14230049 -	AAA--------------AAAAGTATGTCAC---------------A--CTG-GGG-GAACTGCAC---------TGACATTGAAAAACTGAATTACATTGGACGGTGGATGGG--TGGACTGATGGACTGATGGACTGACAGCCACGATC------------------------------------ATCACTAGC-GTCGCAGT---TA-----AGTTATGTAAAC------------------------------------CG
dp4	chr3:18492576-18492741 -	GTA--------------AAAAGTATGTCAGAGAAGAGAAGAGAACACAGTGGGCG-CTGCTGCAC---------TGACATTGAAA-AGTGAATTGCATTGATCATGACGGGGGGTTG-------------ACG--CTGACTGCCACGAACCGCTCAGAACAATAGTGTAAATGTGGAATAA---------------------------------------------TGCTCGTAGA------------ACC-CATTCGCAGTCC
droPer1	super_34:440898-441062 -	GTA--------------AAAAGTATGTCAGAGAAGAGAAGAGAACACAGTAGGCG-CTGCTGCAC---------TGACATTGAAA-AGTGAATTGCATTGATCATGACGGGGG--------------CTGACG--CTGACAGCCACGAACCGCTCAGAACAATAGTGTAAATGTGGAATAA---------------------------------------------TGCTCGTAGA------------ACC-CATTCGCAGTCC
droWil1	scaffold_180745:1170693-1170810 +	CTACGTCGAGCTGTGCCAAAAGTATGTCAACAAAATTAATG---------------------------------------CAACA-AGAAAATTACATGTTTTGCG-----------------------------GTAACTGCAATAA-------------------------------------------------------------ATAACA---TTGAAAACTGCTTAAATG------------ACT-TGTTAAAAGTGA
droVir3	Unknown	G-----------------------------------------------------G-GCGCTGCATTTGCCAGGCCAGAGTTAAAA-AGTGAATTGAATTGGCCGCTTGATTGA--CAG-CCGACGGGCTG---------------------------A----------ATATGTGCAGCAATGCCAACAAATCGATGCCAAAGTCAGTG--------------AGTTATTTACA---------TACGAGCC------ACAAACG
droMoj3	scaffold_6496:26065462-26065476 +	G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC-TATTCACACTCA
droGri2	scaffold_15245:827713-827786 +	GTG------------------------------------------------------TGCTGCAA---------TGCTAACGA------------------------ATTGGA-----------------------------------------------------------------------------------ACCAAAGTCAGTG-TCAGACCCACGTAATCA-----GCA-------------ATC-ACTGGCGGGCCG

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chr2R:20181738-20181869 +	NA	ATAAAAAGTATGTCACT------------------TG-GGGG-------CGCTGCACT---------GGCATTGAAAAGT-GAATTACATTGATCGTGAC----AT-------GGGAATGGAAAATGTC-----G----CC-------------------------------------------------------------------------GAG---------------------------------------------------------------CCATGTAAATCGTTTGGCCTACCCGTCTACC-------A----GCCAACCAACC-------------------A
droSim1	chr2R:18643325-18643449 +	1	ATAAAAAGTATGTCACT---------------TGGTG-GGGG-------CGCTGCACT---------GGCATTGAAAAGT-GAATTACATTGATCGTGAC----AT-------GGGGATGGAAAATGCC-----G----CC-------------------------------------------------------------------------GAG---------------------------------------------------------------CCATGTAAATCGATT----------------GAAGGCC-CG----TGGCCAACC-------------------A
droSec1	super_23:61187-61303 +	3	ATAAAAAGTATGTCACT---------------TGGTG-GGGG-------CGCTGCACT---------GGCATTGAAAAGT-GAATTACATTGATCGTGAC----AT-------GGGGATGGAAAATGTC-----G----CC-------------------------------------------------------------------------GAG---------------------------------------------------------------CCATGTAAATCGATT----------------GAAGGCC-CG------------T-------------------G
droYak2	chr2R:20147877-20148015 +	1	ATAAAAAGTATGTCACT------------------GG-GGGG-------CGCTGCACT---------GGCACTGAAAAGT-GAATTACATTGATCGTGAC----AT-------GGGGATGCGAAATGTC-----G----CCAAACGAAAAAA----TAAA------------------------------------------------------TCA---------------------------------------------------------------TAGTGTAACTCGTTT----------------GAAGGCCAC---ACCAACTAGTA-------------------A
droEre2	scaffold_4845:21546843-21546980 +	10	ATAAAAAGTATGTCACT------------------AG-GGGG------CTTCTGCACT---------GGCATTGAAAAGT-GAATTACATTGATCGTGAC----AT-------GGGGATGGAAAATGTC-----G----CCGCACA-----------------------------------------------------------AAAAAA---GTG---------------------------------------------------------------TAGTGTAAATCGTTT----------------GAAGGCC-CATGGCCAACCAACC-------------------G
droEug1	scf7180000409464:540749-540858 +	4	AAAAAAAGTATGTCACT------------------TG-GGGG-------CGCTGCACT---------GACACTGAAAAGT-GAATTACATTGATCATGGC----AG-------GGGAGCA--AAAT-------------------------------------------------------------CA---------------------------------------GGCA-------------------------------ATAG-------------CCATGTAAATCGTTA----------------GTA----------------AATC-------------------C
droBia1	scf7180000302143:729957-730086 +	3	ACAAAAAGTATGTCACT------------------TG-GGGC-------CGCTGCACTGG-G----GGACATTGAAAAGT-GAATTACATTGATCATGGC----GT-------GGGGGC-----------------TGA---------A-AACTATCTA----------------------------------------GTAAATGGAAAA---GAG---------------------------------------------------------------TCGTGTAAACCGCTA-------------GT-G-AGTTC-CA--------------------------------T
droTak1	scf7180000415722:592281-592424 -	3	CTAAAAAGTATGTCACT------------------TG-GGGG-------CGCTGCACTTGGG----GGACATTGAAAAGT-GAATTACATTGATCATGGC----ATATGGCATGGGGTCGG-------G-----TCTGA---------A-AACTGTCTA----------------------------------------GTAAATGGAAAA---GAG---------------------------------------------------------------TCTTGCAAATCGTTA----------------GTGAGC------------TCCAT-------------------G
droEle1	scf7180000491214:4867267-4867388 -	4	ACAAAAAGTATGTCATT------------------TG-GGGG-------CGCTGCACT---------GGCATTGAAAAGT-GAATTACATTGATCATGGC----AT-------GGGGGCGCCAGAACTC-----A----CTGAAC----------------------------------------------------------------AA---GAG---------------------------------------------------------------CCATGTAAATCGTTA----------------GTGAGT-----------CCAATT-------------------C
droRho1	scf7180000777386:237447-237577 +	2	AAAAAAAGTATGTCATT------------------TG-GGGG-------CGCTGCACT---------GACATTGAAAAGT-GAATTACATTGATCATGGC----AT-------GGGGGCGCCAAAACTC-----A----CCGAAC------------------------------------------------------------AGAAAA---GAG---------------------------------------------------------------TCATGTAAAACGTTTG---------------GTA----------------AATCCAATTCCAT----------G
droFic1	scf7180000453342:22911-23028 +	1	A--AAAAGTATGTCAAA------------------TG-GGGG-------CGCCGAGGC---------GACATTGAAAAGT-GAATTACCCTGATCGTGGG----TG-------ACAGTCAGAAAAAAT-------------------------------------------------------------------------------AATA---GAG---------------------------------------------------------------CCATGTAAATGGTTA----------------GCA-GTT------------AGTAGTTCT--------------C
droKik1	scf7180000302277:1023196-1023338 -	2	ATCAAAAGTATGTCAAC------------------TG-GGGGAGCGGAGTGCTGCACTGACC----TGACATTGAAAAGT-GAATTACAATGATCATGGC----GC---------------------------------------------------CAATAAATAGAGTGAGAC-----------------C---------------------GAG------------------------------AAGCCCGGTGGTGTCTT-G-------------GCCATGTAAATCGATG----------------G---------------GCATGCG-------------------T
droAna3	scaffold_13266:14229911-14230049 -	5	AAAAAAAGTATGTCACA-----------------CTG-GGGG-------AACTGCACT---------GACATTGAAAAACTGAATTACATTGGACGGTGG----AT-------GGGT--GGA-----CTGATGGACTGATGGACT-------------------------GACAGCCACGA-----TCA--TCA---------------------------------------------------------------------CTAGCGTCGCAGTTAAGTTATGTAAACC--------------------------------------------------------------G
droBip1	scf7180000396759:1901653-1901780 +	1	ATAAAAAGTATGTCACA-----------------CTG-GGGG-------AACTGCACT---------GACATTGAAAAATGGAATTACATTGAATGGTGG----AT-------GGGT--GGA-------------CT---------------------------------GACAGCCAAG--TTGATCAGATCA---------------------------------------------------------------------GTAGCTTTGTAGTTAAGTGATGTAAA-------------------------------------------CC-------------------G
dp4	chr3:18492568-18492741 -	12	GTAAAAAGTATGTCAGAGAAGAGAAGAGAACACAGTGGGCGC-------TGCTGCACT---------GACATTGAAAAGT-GAATTGCATTGATCATGAC----GG-------GGGGTTGA-------C-----GCT---------------------------------GACTGCCACGAACCGCTCAGAACAATAGTGTAAATGTGGAATAATGC---------------------------------------------------------------TCGTAGAACCCATTC----------------GC-AGTC-CA-------TGGGCT-------------------G
droPer1	super_45:328754-328870 -	26	GTGAAATGTATTTGAAA------------------CG------------------------------AGTAACGGAAATT-GCATTATTTCAATTACAAA----T----------------------C-----------------------------CAATGAGA----------------------------------------GGGAGA---GGG------ACAGGGACAGGGACCCAGC--------------------ACAAC----------------------------------CCTAGGAGCC-------A----GCCAGCCAGCC-------------------A
droWil1	scaffold_180949:4063354-4063494 -	20	ATTGAGGGCGTGATTTA------------------TG-CCCG-------ATCTACCCC---------ATCATTTAATGTT-AA-AGACAATGCTAATTG-GCCAT---TAAAATAGGCCGCA---------------------------------------------------------------------------------------------ACAGACACAAATAGTTTGGGACCTAA------AAT-------------------------------------------CAAAGCCAACCGACCACC-------A----GCCAACCAGCC-------------------A
droVir3	scaffold_12875:7276052-7276211 +	11	G---------------------------------------GG-------CGCTGCATTTGCCAGGCCAGAGTTAAAAAGT-GAATTGAATTGGCCGCTTG----AT-------TGAC--AG------CCGACGGGCTGA---------A-TA-TGTGCA----------------------------------------GCA-----------ATGC-------------CAACAAATCGATGCCAAAGT-----CAGTGTCAG-T-------------CCCACGTAA-TCGACA-------------ATC-------------------AGTTATTTA-CATACGAGCCACAA
droMoj3	scaffold_6473:1699609-1699741 -	34	ATAATCTATTAGTTATT---------------TAATA-TATG-------T-----------------------------C-AA-TCATTCAGCCACTCA-ATCAT---TAAG---------------T-----------------------------TAATCAAC----------------------------------------G---------AGTAACTCAATCAGTCAGTCATTCAGT-----------------------GC-----------------CTCAATCGTTAAGTCTTCCAATAAGTC-------A----CTCAATCAGTC-------------------A
droGri2	scaffold_15203:4626832-4626941 -	59	GCCCATGCCA--------------------------------------------------------------TAAAAAGA-GTTTTGAACTAATCTTAAG----CA-------GGCAGCGCAAATCGCT-----A----TAAATCAG-CTTT----CTA------------------------------------------------------------------------------------------------------------------------------TTCTTTGTTTTGCCCCACTGTGCACC-------A----GCCAGCCAGCC-------------------A

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

ATA--------------AAAAGTATGTCAC---------------T----TGGGG-GCGCTGCAC---------TGGCATTGAAA-AGTGAATTACATTGATCGTGACATGGGAATGGA--A----AATGTCG--CCG----------------------------------------------------------------------------AGCCATGTAAATCGTTTGGCCTACCCGTCTaccagcc----aaccaacca

Size

Hit Count

Total Norm

droSim1

ATA--------------AAAAGTATGTCAC---------------TTGGTG-GGG-GCGCTGCAC---------TGGCATTGAAA-AGTGAATTACATTGATCGTGACATGGGGATGGA--A----AATGCCG--CCG----------------------------------------------------------------------------AGCCATGTAAATCGATTGAAG-------------GCC-CGTGGccaacca	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
............................................................................................................................................................................................................................GTAAATCGATTGAAG-------------GCC-CG..........	20	1	2.00	0.00	0.00	0.00	2.00
............................................................................................................................................................................................................................GTAAATTGATTGAAG-------------GCC-CGT.........	21	1	1.00	0.00	0.00	0.00	1.00
............................................................................................................................................................................................................................GTAAATCGATTGAAG-------------GCC-CGC.........	21	1	1.00	0.00	0.00	0.00	1.00
............................................................................................................................................................................................................................GTAAATCGATTGAAG-------------GCC-CGT.........	21	1	1.00	0.00	0.00	0.00	1.00

droSec1

ATA--------------AAAAGTATGTCAC---------------TTGGTG-GGG-GCGCTGCAC---------TGGCATTGAAA-AGTGAATTACATTGATCGTGACATGGGGATGGA--A----AATGTCG--CCG----------------------------------------------------------------------------AGCCATGTAAATCGATTGAAG-------------GCC-CGT--------G

Size

Hit Count

Total Norm

V113
Male body

V114
Embryo

V115
Head

droYak2

ATA--------------AAAAGTATGTCAC---------------T----GGGGG-GCGCTGCAC---------TGGCACTGAAA-AGTGAATTACATTGATCGTGACATGGGGATGCG--A----AATGTCG--CCA--------------AACGAAA-------------------------------------AAATAA-------ATCATA---GTGTAACTCGTTTGAAG-------------GCCAC---ACCAACTA

Size

Hit Count

Total Norm

V046
Embryo

V052
Head

V120
Male body

V058
Head

M026
Head

droEre2

ATA--------------AAAAGTATGTCAC---------------T----AGGGGGCTTCTGCAC---------TGGCATTGAAA-AGTGAATTACATTGATCGTGACATGGGGATGGA--A----AATGTCG--CCG--------------CACAAAAAA------------------------------------------------AGTGTA---GTGTAAATCGTTTGAAG-------------GCC-CATGGCCAACCA

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

droAna3

AAA--------------AAAAGTATGTCAC---------------A--CTG-GGG-GAACTGCAC---------TGACATTGAAAAACTGAATTACATTGGACGGTGGATGGG--TGGACTGATGGACTGATGGACTGACAGCCACGATC------------------------------------ATCACTAGC-GTCGCAGT---TA-----AGTTATGTAAAC------------------------------------CG	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
.............................................................................................................................GACTGACGGACTGACGGC.........................................................................................................................	18	1	8.00	0.00	8.00	0.00	0.00
.............................................................................................................................GACTGACGGACTGACGGCC........................................................................................................................	19	1	3.00	1.00	1.00	1.00	0.00
...........................................................................................................................TGGACTGACGGACTGACGGC.........................................................................................................................	20	1	3.00	0.00	3.00	0.00	0.00
................................................................................................ATTGGTGGGTGGATGGG--T....................................................................................................................................................	18	1	2.00	0.00	2.00	0.00	0.00
...........................................................................................................................TGGACTGACGGACTGACG...........................................................................................................................	18	2	0.50	0.00	0.50	0.00	0.00
....................................................................................................GGCGGTGGGTGGG--TGGAC................................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
...................................................................................................GGTGGGTGGATGGG--TGGA.................................................................................................................................................	18	2	0.50	0.00	0.50	0.00	0.00
.............................................................................................................................GACTGACGGACTGACGG..........................................................................................................................	17	2	0.50	0.00	0.00	0.50	0.00
.................................................................................................TTGGTGGGTGGATGGG--TGG..................................................................................................................................................	19	2	0.50	0.00	0.50	0.00	0.00
........................................................................................................GTGGATGGG--TGGGTTGATGG..........................................................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
.........................................................................................................TGGGTGGG--TGGATTGATGG..........................................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
............................................................................................................................GGACTGACGGACTGACGG..........................................................................................................................	18	2	0.50	0.00	0.50	0.00	0.00
...................................................................................................................TGGACTGACGGACTGACGG..................................................................................................................................	19	2	0.50	0.00	0.00	0.50	0.00
..................................................................................................TGGACTGGGGATGGG--TGG..................................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
...........................................................................................................GATGGG--TGGACGGAAGGA.........................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
.................................................................................................TTGGGCGGTGGATGGG--TA...................................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
...........................................................................................................................TGGACTGACGGACTGACGG..........................................................................................................................	19	2	0.50	0.00	0.00	0.50	0.00
....................................................................................................................GGACTGACGGACTGACGG..................................................................................................................................	18	2	0.50	0.00	0.50	0.00	0.00
...........................................................................................................................TGGACTGACGGACTGACGGCC........................................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................................GGATGGG--TGGACATATGG..........................................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
...................................................................................................................TGGACTGACGGACTGACG...................................................................................................................................	18	2	0.50	0.00	0.50	0.00	0.00
.....................................................................................................................GACTGACGGACTGACGG..................................................................................................................................	17	2	0.50	0.00	0.00	0.50	0.00
..........................................................................................................GGATGGG--TGGATGGATGGA.........................................................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00

dp4

GTA--------------AAAAGTATGTCAGAGAAGAGAAGAGAACACAGTGGGCG-CTGCTGCAC---------TGACATTGAAA-AGTGAATTGCATTGATCATGACGGGGGGTTG-------------ACG--CTGACTGCCACGAACCGCTCAGAACAATAGTGTAAATGTGGAATAA---------------------------------------------TGCTCGTAGA------------ACC-CATTCGCAGTCC	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
................................................................................................................................................................AATAGTGAAAATGTGGAG......................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
...............................................................................................................................................................AAATAGTGAAAATGTGGA.......................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
............................AGAGAAGAGAAGAGAAGA..........................................................................................................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
................................AAGAGAAGAGAAGAGAGTG.....................................................................................................................................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00

droPer1

GTA--------------AAAAGTATGTCAGAGAAGAGAAGAGAACACAGTAGGCG-CTGCTGCAC---------TGACATTGAAA-AGTGAATTGCATTGATCATGACGGGGG--------------CTGACG--CTGACAGCCACGAACCGCTCAGAACAATAGTGTAAATGTGGAATAA---------------------------------------------TGCTCGTAGA------------ACC-CATTCGCAGTCC	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
...................................................................................................................................................................................AA---------------------------------------------TGCTCGTAGA------------ACC-CATT........	19	1	2.00	0.00	0.00	0.00	0.00	2.00

droWil1

CTACGTCGAGCTGTGCCAAAAGTATGTCAACAAAATTAATG---------------------------------------CAACA-AGAAAATTACATGTTTTGCG-----------------------------GTAACTGCAATAA-------------------------------------------------------------ATAACA---TTGAAAACTGCTTAAATG------------ACT-TGTTAAAAGTGA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
............................AACAGAATTAAxG---------------------------------------CAACA-AGAAA.............................................................................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
................................................................................CAACA-AGAAAAACACATG.....................................................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
...............................................................................................................................................AATAA-------------------------------------------------------------AxAACA---TTGGAAAC......................................	18	1	1.00	0.00	0.00	0.00	1.00
.................................AATCAATx---------------------------------------CAACA-AGAAAA............................................................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
............................AACAGAATTAAxG---------------------------------------CAACA-AGA...............................................................................................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
.....................................AAGG---------------------------------------CAACA-AGAAAATTATAT......................................................................................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
..................................ATTAATG---------------------------------------CAACC-AGAAAC............................................................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00

droVir3

G-----------------------------------------------------G-GCGCTGCATTTGCCAGGCCAGAGTTAAAA-AGTGAATTGAATTGGCCGCTTGATTGA--CAG-CCGACGGGCTG---------------------------A----------ATATGTGCAGCAATGCCAACAAATCGATGCCAAAGTCAGTG--------------AGTTATTTACA---------TACGAGCC------ACAAACG

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

droMoj3

G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC-TATTCACACTCA

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

droGri2

GTG------------------------------------------------------TGCTGCAA---------TGCTAACGA------------------------ATTGGA-----------------------------------------------------------------------------------ACCAAAGTCAGTG-TCAGACCCACGTAATCA-----GCA-------------ATC-ACTGGCGGGCCG

Size

Hit Count

Total Norm

V109
Male body

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image											None
UNAFold Image											None

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image