Possible Orthologs for dme-mir-4982

droSim1 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
2	chr2R:13317686-13317836 +	96.07	TTTT-GAGTCGAAAGGACCAACTTTGCTGGCATTCGGTGGCCAATAATGCAATTGCATGTCCTTGTTGCTGTTGCAATGTTGCAGCTGGAATTGCAATTGCATTTCTAGTTGCCGCTGCTGCTGCTCGAGTGGCAATTAGCTGGGTGTCTC TTTTCGAGTCGAAAGGACCAACTTTGCTGGCATTCGCTGGCCAATAATGCAATTGCGTGTCCTTGTTGCTGTTGCAATGTTGCAGCTGGAATTGCAATTGCATTTCTAGTTGCCGCTGCTGCTGCTCGAGTGGCAATTAGCTGGGTGTCTC Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo ..................................................................................CAGCTxGAATTGCAATGGC.................................................. 18 1 1.00 0.00 1.00 0.00 0.00
3	chr3L:22127031-22127037 +	2.7	TTTTGAGTCGAAAGGACCAACTTTGCTGGCATTCGGTGGCCAATAATGCAATTGCATGTCCTTGTTGCTGTTGCAATGTTGCAGCTGGAATTGCAATTGCATTTCTAGTTGCCGCTGCTGCTGCTCGAGTGGCAATTAGCTGGGTGTCTC GTTCCTG----------------------------------------------------------------------------------------------------------------------------------------------- Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo	None	None

droSec1 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
3	super_1:12115359-12115508 +	96.04	TTTTGAGTCGAAAGGACCAACTTTGCTGGCATTCGGTGGCCAATAATGCAATTGCATGTCCTTGTTGCTGTTGCAATGTTGCAGCTGGAATTGCAATTGCATTTCTAGTTGCCGCTGCTGCTGCTCGAGTGGCAATTAGCTGGGTGTCTC TTTCGAATCGAAAGGACCAACTTTGCTGGCATTCGCTGGCCAATAATGCAATTGCATGTCCTTGTTGCAGTTGCAATGTTGCAGCTGGAATTGCAATTGCATTTCTAGTTGCCGCTGCTGCTGCTCGAGTGGCAATTAGCTGGGTGTCTC Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head .................................................................................................................................TGGCAGTTAGCTGGTTGT... 18 1 3.00 0.00 0.00 3.00 ....................................................................................................................GCAGCTGCTCGAGxGGCAAT.............. 19 1 1.00 0.00 1.00 0.00 ........................................................................GCAATGCTTCAGCTGGAA............................................................ 18 1 1.00 0.00 1.00 0.00 .......................................................ATGTxCTTGATGCAGTTGC............................................................................ 18 1 1.00 0.00 1.00 0.00
1	super_0:1994590-1994735 +	54.8	TTTTG---AGTCGAAAGGACCAACTTTGCTG--GCATTCGGTGGCCAATAATG-----CAATTGCATGTCCTTG-----TTGCTGTTGCAATGTTGCAGCTGGAATTGCAATTGCATTTCTAGTTGCCGCTGCTGCTGCTCG-AGTGGCAATTAGCTGGGTGTCTC TTTTGTGCAAACAATAAAACCGACTTTCCGGTAGAGTTG-------AGAAATGGCTGTGAGTTCGAGGCGCTTGAGTGCTTTCAAGTTCAATGT--CAGCTGCAGTTGCAATTCCAGTTGCAGCTGCCTTTTGCACTGCTCACTGTTGCAATTTG----------- Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head TTTTGTGCAATCAATATA.................................................................................................................................................... 18 1 1.00 0.00 1.00 0.00 ...........................................................................................................GAAATTCCAGTTGCAGCAGCC...................................... 21 1 1.00 0.00 1.00 0.00

droYak2 - 6 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
7	chr2R:14591968-14592144 -	66.61	TTTT-GAGTCGAAAGGACCAACT-TTGCTGGCATTCGGTGGCCAATAATGCAATTGCATGTCCTTGTTGCTGTTGCAATGTTGC-------AGCTGGAATTGCAATTGCATTTCTAGTTGC------------------CGCTGCTGCTGCTCGAGTGGCAATTAGCTGGGTGTCTC TTTTCGGGTCGAAAGGACCAACTTTTGTTGGCATTCGCTGGCCAATAATGCAATTGCGTGTCCTTGTTGCTGTTGCAATGTTGCAACTTGCAACTGGAATTGCAATTGCATTTCTAGTTGCTTCTCCTCTTTTTCCTGCTGCTCCTACTCCTCGAGTGGCAATTAGCTGGGTGTCTC Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head ...TCGGGTAGAAAGGACCAT............................................................................................................................................................ 18 1 1.00 0.00 0.00 0.00 1.00 0.00 ..TTCGGCTCGxAAGGACCA............................................................................................................................................................. 17 1 1.00 0.00 0.00 0.00 1.00 0.00 ............................................................................................................................................................TGGCAGTTAGCTGGTTGT... 18 1 1.00 0.00 0.00 1.00 0.00 0.00
11	chrX:16246859-16246988 -	56.08	TTTTGAGTCGAAAGGACCAACTTTGCTGGCATTCGGTGGCCAATAA----TGCAATTGCATGTCCTTGTTGCTGTTGCAATG-TTGCAGCTGGAATTGCAATTGCATTTCTAGTTGCCGCTGCTG------CTGCTCGAGTGGCAATTAGCTGGGTGTCTC TT-------------------------------CGATTTCCGTTAAGCCGTTTAACTTGATGTTGTTGTTGTTGCTGCTGTGCTTACAGCTGAAATTGCAGTTGCATTTCGTGTTGCTGTTGCAGTTCCAGTTGCAGTTGTGTCAATAAGCCGGGCTTAAC Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head ................................................TGTTTAAxTTGATGTTGTTGT............................................................................................ 20 1 1.00 0.00 0.00 1.00 0.00 0.00 ........................................................CTGATGTCGTTGTTGTTGCTG.................................................................................... 21 21 0.05 0.05 0.00 0.00 0.00 0.00 ...........................................................GTGTTGTTGTTGTTGCTT.................................................................................... 18 50 0.02 0.00 0.02 0.00 0.00 0.00 .......................................................................................................GCCTTTCGTGTTACTGTTG....................................... 19 1 1.00 0.00 0.00 0.00 1.00 0.00 .........................................................TGATGTCGTTGTTGTTGCTGC................................................................................... 21 25 0.04 0.04 0.00 0.00 0.00 0.00
5	chrX:10514616-10514781 +	50.12	TTTTGAGTCGAAAGGACCAACTTTGCTGGCATTCGGTGGCC---AATAATGCAATTGCATGTCCTTGT----------TGCTGTTGCAATGTTGCAGCTGGAATTGCAATTGCATTTCTAGTTGCCGCTGCTGCTGCTCGAGTGGCAATTAGCTGGG------TGTCTC AGTATGGTAGTATGGTAGTAGTATGGTAGTAGTTAGCGGTTCTGTACTGTACTTTTGTCTGTTCTTGTCCCACTGCTTGGCACTTGCATTGCTGCAGTTGCAGTTGCAGTTGCAGTTGCAGCTGCAGTTGCTGTTGC---AGTTGCAGTTGTCTGGGGCAGCTGGTCTG Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head .................................................................................................TTGCAGTTGCCGTTGCCGTTG................................................... 21 4 0.25 0.00 0.00 0.25 0.00 0.00 .........................................................................................CGCTCCAGTTGCAGTTGCA............................................................. 19 5 0.20 0.20 0.00 0.00 0.00 0.00 ....................................................................................................................................................TTGGCTGGGGCGGCTG..... 16 1 1.00 0.00 0.00 0.00 1.00 0.00 ....................GTATGGTAGTAxTTAGTGGT................................................................................................................................. 19 1 1.00 0.00 0.00 1.00 0.00 0.00 .........GAATGGTAGCAGTATGGT.............................................................................................................................................. 18 1 1.00 0.00 0.00 1.00 0.00 0.00
9	chrX:8112958-8113141 -	42.98	TTTTGAGTCGAAAGGACCAACTTT---GCTGGCATTCGGTGGCCAAT---------AATGCAATTGCATGTCCT-----TGTTGCTGTTGCAAT----------------------GTTGCAGCTGGAATTG------CAATTGCATTTCTAGTTGCCGCTGCTGCTGCTCGAGTGGCAATTAGCTGGGTGTCTC CATT-AGTCAAAGAAACCAAGTCAGGGGCTGGCAATCAGCAGCCCGTATGTTGGCCAAATCAATTGCTCTTGCTCCTCATGTTGCTGCTTCAGTTGCTGCTTCAGTTGCTGCTTCAGTTGCAGCTTCAGTTGCTGTTGCTGTTGCAGTTGCAGTTGCTGCTGCTGCTGCT----------TCTGTTGATTGTGTC Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head
4	chr2R:20666570-20666693 +	41.89	TTTTGAGTCGAAAGGACCAACTTTGCTGGCATTCGGTGGCCAATAATGCAATTGCATGTCCTT-------GTTGCTGTTGCAATGTTGCAGCTGGAATTGCAATTGCATTTCTAGTTGCCGCTGCTGCTGCTCGAGTGGCAATTAGCTGGGTGTCTC GG---------------------------CTTTCGTTAGCCGT-AAT-TAATTGCTCCATTCTGTTATGGGCGAATGTGGCCCAATGGCGGCTGTCCGTCCACTCGCACAACTAACGCTCTCTGAAG----ACAAATGGGCGCTGGGTGGCGGATTC Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head .......................................................................................................................................TTGGGCGCTGGGGGGCGG.... 18 1 6.00 0.00 0.00 0.00 6.00 0.00 .......................................................................................................................................TTGGGCGCTGGGGGGCG..... 17 1 5.00 0.00 0.00 0.00 5.00 0.00 .......................................................................................................................................TTGGGCGCTGGGCGGCG..... 17 1 2.00 0.00 0.00 0.00 2.00 0.00 .......................................................................................................................................TTGGGCTCTGGGTGGCGG.... 18 1 1.00 0.00 0.00 0.00 1.00 0.00 ........................................................................................................................................TGGGCTCTGGGGGGCGG.... 17 1 1.00 0.00 0.00 0.00 1.00 0.00 .......................................................................................................................................TTGGGCGCTGGGGGGCGGAT.. 20 1 1.00 0.00 0.00 0.00 1.00 0.00 ........................................................................................................................................TGGGCGCTGGGGGGAGG.... 17 1 1.00 0.00 0.00 0.00 1.00 0.00 ...........................................................................................................................GAGG----ACAAATGGGAGCTG............ 18 1 1.00 0.00 0.00 1.00 0.00 0.00 .......................................................................................................................................ATGGGGGCTGGGGGGCG..... 17 1 1.00 0.00 0.00 0.00 1.00 0.00 .......................................................................................................................................TTGGGCTCTGGGTGGCG..... 17 1 1.00 0.00 0.00 0.00 1.00 0.00
1	chr2L:6822574-6822663 +	35.58	TTTTGAGTCGAAAGGACCAACTTTGCTGGCATTCGGTGGCCAATAATGCAATTGCATGTCCTTGTTGCTGTTGCAATGTTGCAGCTGGAATTGCAATTGCATTTCTAGTTGCCGCTGCTGCTGCTCGAGTGGCAATTAGCTGGGTGTCTC TGCTG--------------------------------------------------------CTGTTCCTGCTGC--TGCTGGTGCTGATCCTGCAGCTGCAGTTGCATTTGTCGCTGCTGCGGCGTCTGCAGCAGCT--CGAAGTGCTCC Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head .........................................................................C--TGATGGTGCTGATCCTC......................................................... 18 1 1.00 0.00 0.00 0.00 1.00 0.00 ............................................................................................................................GTCTGxAGCAGCG--CGAAGTG.... 19 1 1.00 0.00 0.00 1.00 0.00 0.00

droEre2 - 3 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
3	scaffold_4845:8798992-8799150 +	82.54	TTTTGAGTCGAAAGGACCAACTTTGCTGGCATTCGGTGGCCAATAATGCAATTGCATGTCCTTGTTGCTGTTGCAATGTTGCAGCTGGAATTGCAATTGCATTTCTAGTTG---------CCGCTGCTGCTGCTCGAGTGGCAATTAGCTGGGTGTCTC TTTCGCGTCGAAAGGACCAACTTTGCTGGCACTCGCTGGCCAATAATGCAATTGCGTGTCATTGTTGCTGTTGCAATGTTGCAACTGGAATTGCAATTGCATTTCTAGTTGCTCCTCATGCTGCTGCTGCTCCTCGAGTGGCAATTAGCTGGGTGTCTC Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head ..........................................................................................................................................TGGCAGTTAGCTGGTTGT... 18 1 4.00 0.00 0.00 0.00 4.00 .....................................................................................................................AAGCTGCTGCTGCTCCTCCA...................... 20 1 1.00 0.00 1.00 0.00 0.00 ..................................................................................................................CTCATGCTGCTGCTCGTC........................... 18 8 0.13 0.00 0.00 0.00 0.13
1	scaffold_4770:13488241-13488392 +	56.17	TTTTGAGTCGAAAGGACCAACTTTGCTGGCA---------TTCGGTGGCCAATAATGCAATTGCATGTCCTTGTTGCTGTTGCAATGTTGCAGCTGGAATTGCAATT------------GCATTTCTAGTTGCCGCTGCTGCTGCTCGAGTGGCAATTAGCTGGGTGTCTC CAATGAG--------AGGAACTTCGCTGATATCGATTAAATTTGGCGGCGATTGTTGCTGTTGT-TGCTGTTGTTGCTGCGGGGCTGTTGCTGCTGCAGTTGCTGTTGCAATCGCAGTTGCAGTTGCAGTTGCAGTTGCTGTTGCT---GTTGCTGTTG-------GCGTC Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head ...........................................................................................................................TTGCAGTGGCAGTTCCTG.............................. 18 5 0.40 0.00 0.00 0.00 0.40 ........................................................ATTGTTGT-TGCTGTTGTT................................................................................................ 18 42 0.02 0.00 0.00 0.00 0.02 ......................................................................................................................................GTTTCTGTTGCT---GTTTCTGT.............. 20 12 0.08 0.00 0.08 0.00 0.00 ..................................................ATTGTTGTTGTTGT-TGTTG..................................................................................................... 19 31 0.03 0.00 0.00 0.00 0.03 ...................................................................CTGTTGTTGCTGCTGGCC...................................................................................... 18 25 0.04 0.00 0.00 0.00 0.04 ...................................................TTGGTGCTGTTGT-TGATGTT................................................................................................... 20 8 0.13 0.00 0.00 0.00 0.13 ...................................................TTGTTGCTGTTGT-TGTTG..................................................................................................... 18 43 0.02 0.00 0.00 0.00 0.02 ........................................................TTTGTTGT-TGCTGTTGTT................................................................................................ 18 49 0.02 0.00 0.00 0.00 0.02 .......................................................CGCTGTTGT-TGCTGTTGTTT............................................................................................... 20 7 0.14 0.00 0.00 0.00 0.14 ............................................................TTGT-TGCTGTTGTTGTTG............................................................................................ 18 43 0.02 0.00 0.00 0.00 0.02 ....................................................TGTTGCTGTTGT-TGCTGT.................................................................................................... 18 103 0.01 0.00 0.00 0.00 0.01 ....................................................TGTTGTAGTTGT-TGCTGTTG.................................................................................................. 20 37 0.03 0.00 0.00 0.00 0.03 ...................................................................................................................AGTGGCAGCTGCAGTTGC...................................... 18 15 0.07 0.00 0.00 0.00 0.07 ..........................................................CGTTGT-TGGTGTTGTTGC.............................................................................................. 18 21 0.05 0.00 0.00 0.00 0.05 .........................................................................................................................AGTGGCAGCTGCAGTTGC................................ 18 15 0.07 0.00 0.00 0.00 0.07
5	scaffold_4845:17610843-17610975 +	53.92	TTTTGAGTCGAAAGGACCAACTTTGCTGGCATT-CGGTGGCCAATA-ATGCAATTGCATGTCCTTGTTGCTGTTGCAA----TGTTGCAGCTGGAATTGCAATTGCATTTCTAGTTGCCGCTGCTGCTGCTCGAGTGGCAATTAGCTGGGTGTCTC ----------------CCAGTGTTGTTGCTGTTGCTGTTGCCAATAGATGTTGCTG-------CTGCTGCTGTTGCATTTGCTGCTGCAGCTGCTGCTGCAGTTGCTGCTGTAGTTGCTGCTGCTGCTGCTGCTGCTGCAGGCGGATCAAACTGTT Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head ....................TGTTGTAGTTGTTGCTGTTG.................................................................................................................... 20 37 0.03 0.00 0.00 0.00 0.03 .............................................AGATGTTGCTA-------ATGCTGCT..................................................................................... 19 11 0.09 0.09 0.00 0.00 0.00 ..................AGTGTTATTGTTGTTGCTG....................................................................................................................... 19 5 0.20 0.00 0.00 0.00 0.20 ..................ATTGTTGTTGCTGTTGTT........................................................................................................................ 18 42 0.02 0.00 0.00 0.00 0.02 .................TAGTGTTGTTGTTGTTGCTG....................................................................................................................... 20 14 0.07 0.00 0.00 0.00 0.07 ..................AGTGTTATTGTTGTTGCTGTT..................................................................................................................... 21 2 0.50 0.00 0.00 0.00 0.50 .............................................AGATGTTGCTC-------ATGCTGCT..................................................................................... 19 8 0.13 0.13 0.00 0.00 0.00 ......................TTGTTGCTGTTGTTGTTG.................................................................................................................... 18 43 0.02 0.00 0.00 0.00 0.02

droFic1 - 4 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
7	scf7180000453811:359819-359967 -	73.02	TTTTGAGTCGAAAGGACCAACTTTGCTGGCATTCGGTGGCCAATAATGCAATTGCATGTCCTTGTTGCTGTTGCAATGTTGCAGC------TGGAATTGCAATTGCATTTCTAGTTGCCGCTGCTGCTGCTCGAGTGGCAATTAGCTGGGTGTCTC TTCCGAGGAAAAAGGGACAACTTCGATGACATTTACTGGCCAATAATGCAATTGCGT------GTTGCAATGGCAA-GTTGCAACACTAGTTTCACTTGCAAGTGCAATTTTCGTTGCAACTGCTGCTGCTCGAGAAGCAATTAGCAGGGTGTCTC Size Hit Count Total Norm
2	scf7180000453829:1164127-1164273 +	57.99	TT--TTGAGTCGAAAGGACCAACTTTGCTGGCATTCGGTGGCCAATAATGCAATTGCATGTCCTTGTTGCTGTTGCAATGTTGCAGCTGGAATTGCAATTGCATTTCTAGTTGCCGCTGCTGCTGCTCGAGTGGCAATTAGCTGGGTGTCTC TGCATTGCCACTAACAGCACACAGCAAATAATATTAATTAACAATTAATGCACTCGATTCCCGTTGATGCAGTTGC--TGTTGCAGTTGCAATTCCAATTGCAGTTGCAGTTGCAGTTGCAGTCGCGTGAACAGAATTTCACGAGGGGT--- Size Hit Count Total Norm
1	scf7180000453782:491663-491744 +	34.0	TTTTGAGTCGAAAGGACCAACTTTGCTGGCATTCGGTGGCCAATAATGCAATTGCATGTCCTTGTTGCTGTTGCAATGTTGCAGCTGGAATTGCAATTGCATTTCTAGTTGCCGCTGCTGCTGCTCGAGTGGCAATTAGCTGGGTGTCTC T--------------------------------------------------------------GTTGCTGTTGCGATGTTGCTGCTGCTCCTGCTTTTGCTGTTGATGTTGCTGTTGCTGTTGCTGTCGC------CGGCTAAATTTGTT Size Hit Count Total Norm
6	scf7180000454077:345818-345901 +	30.56	TTTTGAGTCGAAAGGACCAACTTTGCTGGCATTCGGTGGCCAATAATGCAATTGCATGTCCTTGTTGCTGTTGCAATGTTGCAGCTGGAATTGCAATTGCATTTCTAGTTGCCGCTGCTGCTGC--TCGAGTGGCAATTAGCTGGGTGTCTC TG----------------------------------------------------------------GCTGCTGT-TTGTTGTTTCTGCTGTTTCTGTTGTTTCTGTTGTTGTTGTTGTTGTTGTTGTTGAGTTGTTTTTGGTCCTGTCT--- Size Hit Count Total Norm

droEug1 - 3 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
8	scf7180000409663:750613-750768 -	74.19	TTTT-GAGTCGAAAGGACCAACTTTGCTGGCATTCGGTGGCCAATAATGCAATTGCATGTCCTTGTTGCTGTTGCA-----ATGTTGCAGCTGGAATTGCAATTGCATTTCTAGTTGCCG------CTGCTGCTGCTCGAGTGGCAATTAGCTGGGTGTCTC TTTTTCCTTCGAAAGGACCAACTTCGATGAGATTTGCTGGCTAGAAATGCAATTGCGTGTCCTTGTTGCAGTTGCACAGCCATGTTGCACTTG------TAATTGCAATTCTAGTTGCTGTTTGTGCCGCTGCTGCTCGAGTGGCAATTAGCAGGGTGTCTC Size Hit Count Total Norm
3	scf7180000409246:185595-185746 -	53.35	TTTTGAGTCGAAAGGACCAACTTTGCTGGCATTCGGTGGCCAATAATGCAATTG---------------------------------CATGTCC----------------------TTGTTGCTGTTGCAATGTTGCAGCTGGAATTGCAATTGCATTTCTAGTTGCCGCTGCTGCTGCTCGAGTGGCAATTAGCTGGGTGTCTC ----GAGTT---AA--------------------------CAACAACGCTATTGGTGCTGCTGTGGGTGGTGGTGCTTGCTGTGGTGCATGTTGGTGCTGCCACTGTTAGCTGAAGTTGTTGC--------TGTTGCTGATGCAATTGCTGTTGATGTTGTTGTTGCTGCTGCTGCTGCTGCAGTTGCAATT------------- Size Hit Count Total Norm
4	scf7180000409271:690012-690080 -	32.32	TTTTGAGTCGAAAGGACCAACTTTGCTGGCATTCGGTGGCCAATAATGCAATTGCATGTCCTTGTTGCTGTTGCAATGTTGCAGCTGGAATTGCAATTGCATTTCTAGTTGCCGCTGCTGCTGCTCGAGTGGCAATTAGCTGGGTGTCTC A-------------------------------------------------------------TGTTGCTGT--------TGCAGCTG------CAATTGCAGTTGATGTTGCAGTTGCTGTTGCT---GTGTCAATAAGCCGGG---CTT Size Hit Count Total Norm

droBia1 - 3 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
5	scf7180000302292:1790364-1790532 -	63.74	TTTTGAGTCGAAAGGACCAACTTTGCTGGCATTCGGTGGCCAATAATGCAATTGCATGTCCTTGTTGCTGTTGCAAT-----GTTGCA------GCTGGAATTGCAATTGCATTTCTAGTTGCCGCTGCTG--------CTGCTCGAGTGGCAATTAGCTGGGTGTCTC CGCCGCGGAAGAAGGACCAACTTCGATGGCATTTGCTGGCCAATAATGTAATTTCGTGTCCTTGCTGCACTTGCAACGACAAGTTGCAATGCCCGCTGCACTTGTAATTGCAGTTCTAGTTGCTGCCGCTGCTGGCCTGCTGCTCGAGTGGCAATTAGCAGGGTGTCTC Size Hit Count Total Norm
2	scf7180000302421:1530073-1530234 +	47.78	TTTTGAGTCGAAAGGACCAACTTTGCTGGCATTCG-----GTGGCCAATAATGCAATTGCATGTCCTTGTTGCTGTTGCAA-------------------------TGTTGCAGCTGGAATTGCAATTGCATTTCTAGTTGCCGCTGCTGCTGCTCGAGTGGCAATTAGCTGGGTGTCTC TGTTGTGGTGGTGGAGGTGGTGGTGCTAGTATTGGTTGCAATTGCCGGTGGTGCTACTGC-------TGCTGCTGTTGCCGGCGGTGCTGGGCTACTTGCAGCATCTGTTGCTGTTGCAATGGCAAGTGCAATTTCTGTTGCTGTTGCTGCTGCT---------GTCAG--GGTTGCCTC Size Hit Count Total Norm
1	scf7180000301506:2122387-2122573 +	34.68	TTTTGAGTCGAAAGGACCAACTTT--------------GCT--------------------GGCATTCGGTGGCCAATAATGCAATTG-----------------CATGTCCTTGTTGCTGTTGCAATGTT---GCAGCTGGAATTGCAATTGCATTTCTAGTTGCCGCTGCTGCTGCTCGAGTGGCAATTAGCTGGGTGTCTC TCTTA--TCGAGTGGGCCGCACCCAGCGATCCGATCGAGCTGTAGAGCAAGGCAAACAGGGAACAATCGGTCAGCGACAATGAAAACGCCGAGTGCGAGTACGAGTAGCTTTTTGCCGCCGCTGCAGCGGCTGTCGAACAATATTTTCAGTTGTACTTTTCATTT-------------TCTATTTG--TTTAACTGGCGGCGGC Size Hit Count Total Norm

droTak1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
2	scf7180000415991:23390-23548 +	69.53	TTTTGAGTCGAAAGGACCAACTTTGCTGGCATTCGGTGGCCAATAATGCAATTGCATGTCCTTGTTGCTGTTGCA-----ATGTTGCA--------GCTGGAATTGCAATTGCATTTCTAGTTGCCGCTGCTGCTGCTCGAGTGGCAATTAGCTGGGTGTCTC T--TGAGGGAAAAGGACCAACTTCGATGAGATTAGCTGGCGAATAATGCAATCGCGTGACCTTGTTGCAGTTGCATTGGCAAGTTGCAAGTTGCTCGCTGCCCCAGCAAATGCAATTCTAGTTGCAGC---TGCTGCTCGAGTGGCAATTAGCAGGGTGTCTC Size Hit Count Total Norm

droEle1 - 5 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
7	scf7180000490996:1014509-1014655 -	59.86	TTTTGAGTCGAAAGGACCAACTTTGCTGGCATTCGGT-GGCCAATAATGCAATTGCATGTCCTTGTTG---CTGTTGCAATGTTGCAGCTGGAATTGCAATTGCATTTCTAGTTGCCGCTGCTGCTGCTCGAGTGGCAATTAGCTGGGTGTCTC TCCCGGCTC-AAA-GCTCACCTTCTTCTGCACTGGCTTGGCCATCA--GCTGTTGC-TGTTGCTGTTGATGCTGCTGC--TGTTGCAGTTGCTGCTGCAGTTGCTGTTGCTGTTGCTGCTGCTGCTGCTGCAGCGGGTAGTAGCCATGCGGCAG Size Hit Count Total Norm
10	scf7180000491228:377468-377635 -	58.21	TTT--------TGAGTCGAAAG--GACCAACTTTGCTGGCATTCGGTGGCCAATAATGCAATTGCATGTCCTTGTTGCTGTTGCAAT-----GTTGCAG------CTGGAATTGCAATTGCATTTCTAGTTGCCGCTGCTGCTGCTCGAGTGGCAATTAGCTGGGTGTCTC TTCCTTGGTACTGCTACGAAAGGCGATTTACTTCGATGAGCCTTGCTGCTCAATAATGCAATTGCGTGCCCGTGTTTCAGTTGCAATGGCGTGTTGCAATGCTCACTGCAATTGTAAGTGCAGTTATAGTTCATGCTGCTGCTAT---TGTGGCAATTAGCAGGGTGTCTC Size Hit Count Total Norm
9	scf7180000491046:88842-88976 -	49.34	TTTTGAGTCGAAAGGACCAACTTTGCTGGCATTCGGTGGCCAATAATGCAATTGCATGTCCTTGTTGCTGTTGCAATGTTGCAGCTGGAATTGCAATTGCATTTCTAGTTGCCGCTGCTGCTGCTCGAGTGGCAATTAGCTG---------GGTGTCTC CTTTTTATCGCAAAACCAAACTTTCTTTGGCTTAGCCTGC-------------------TGTTTTTGATGT-----TGTTGCTGCTGCTGCTGTGTCTGCAATATCTGTTGCTGCTGCTGCTGCTGCAGTGGTTGTCTGCTGTATGTTGCTGGTGTTAT Size Hit Count Total Norm
2	scf7180000490546:726299-726467 +	46.04	TTTTGAGTCGAAAGGACCAACTTTGCTGGCATTCGGTGGCCAATAATGCAATTGCATGTCCTTGTTGCTGTTGC---------------------------AA----TGTTGCAGCTGGAATTGCAATTGCATTTCTAGTTGCCGCTGCTGCTGCTCGAGTGGCAATTAGCTGGGTGTCTC GGTGGAGGTGGTGGTGCTTATTGTTGTTGCA----GTTGCAGATGGTGCAATTGT-------TGCTGCTGTTGCCGGTGATAACGGTGCTAGACTACTTGCAATTTCTGTTGCTGCTGCTGTTGCAATTGCAATTTCTGTTGCTGTTGCTTTTGCTGCTGTTGTTGTTGCCTCTGTG-CTT Size Hit Count Total Norm
3	scf7180000491008:2886925-2887087 +	43.47	TTTTGAGTCGAAAGG------ACCAACTTTGCTGGCATTCGGTGGCCAATAATGCAATTGC---ATGTCCTTGTTGCTGTTGCAATGTTGCAG----------CTGGAATTGCAATTGCATTTCTAGTTGCCGCTGCTGCT---GC--TCGAGTGGCAATTAGCTGGGTGTCTC ATACGCACCGACAACTTCCAAATTGACATTGCTGT---TCCGGGTC------TGCGAAAGCTTGAAGTCCACGCGACAGC--GAAAGTTGCCCGCATCCTTTTCCTGAAATGAAATTCCAATTATAGAGCGCCGCGCTGTTGACACTCGCGAGTGGCGGAGGTGAGGGGGATTG Size Hit Count Total Norm

droRho1 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
2	scf7180000766409:161897-162055 -	63.78	TTTTGAGTCGAAA-GGACCAACTTTGCTGGCATTCGGTGGCCAATAATGCAATTGCATGTCCTTGTTGCTGTTGCAAT-----GTTGCAG------CTGGAATTGCAATTGCATTTCTAGTTGCCGCTGCTGCTGCTCGAGTGGCAATTAGCTGGGTGTCTC TTGCTAGAAAAAATAGGCAAACTTCGATGAGCTTTGCTGGAAAATAATGCAATTGCGTGTTCGTGCTGTAGTTGAAATGGCATGTTGCAATGCTTACTGCACTTGTAAGTGCAATTTCAGTTGCAGCTG---CTGCTCTAGTGGCAATTAGCAGGGTGTCTC Size Hit Count Total Norm
1	scf7180000780080:457703-457832 +	52.05	TTTTGAGTCGAAAGGACCAACTTTGCTGGCATTCGGT-----GGCCAATAATGCAAT-----TGCATGTCCTTGTTGCTGTTGCAA-TGTTGCAGCTGGAATTGCAATTGCATTTCTAGTTGCCGCTGCTGCTGCTCGAGTGGCAATTAGCTGGGTGTCTC TCTGGGATCCGTAGAGCTGAC-----CGGCGGTCGGGGTCATGTCCGTTAGCATCTTTGCCGTGGATGTTGCTGCTGCTGCTGCGGTTGTTGCTGCTGCAGTTGCAGTTGCAGTTGCAGTTGTCGTTGCTGCTGC-------------------------- Size Hit Count Total Norm

droKik1 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
3	scf7180000302682:297395-297515 +	46.57	TTTTGAGTCGAAAGGACCAACTTTGCTGGCAT--------TCGGTGGCCAATAATGCAATTGCATGTCCTTGTTGCTGTTGCAATGTTGCAGCTGGAATTGCAATTGCATTTCTAGTTGCCGCTGCTGCT--------GCTCGAGTGGCAATTAGCTGGGTGTCTC TTTTGA----AAAGGACAAAGTTCGATGCGATTTGCTCTTTCGCTGGCCCATAATGCAATTGCA---GCTTGGCTCTGTTGCAATATTC--------------------------------------GGTGCCCTTTAACCCAAGAGGCAATTAGCTGGGCGTCTC Size Hit Count Total Norm
2	scf7180000302385:76765-76865 +	42.57	TTTTGAGTCGAAAGGACCAACTTTGCTGGCATTCGGTGGCCAATAATGCAATTGCATGTCCTTGTTGCTGTTGC-------AATGTTGCAGCTGGAATTGCAATTGCATTTCTAGTTGCCGCTGCTGCTGCTCGAGTGGCAATTAGCTGGGTGTCTC CCATCGGC------------------------------------------------TGCGGTTGTTGCTGCTGCTGCTGTGGATGTTGCTGCTGCAGTTGCTGTTGCATTTGCAATTGCTGCAGCTGAAGCTG--------ATGAGCTGGATGGTTC Size Hit Count Total Norm

droAna3 - 7 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scaffold_13334:1368045-1368196 +	53.7	TTTTGAGTCGAAAGGACCAACTTTGCTGGCATTCGGTGGCCAATAATG----------------CAATTGCATGTCCTTGTTGCTGTTGCAATGTTGCAGCTGGAATTGCAATTGCATTTCTAGTTGCCGCTGCTGCTGCTC---------GAGTGGCAATTAG--CTGGGTGTCTC TTTTGAGCTGCA-----------------------GTTGCAGATAAAGTTACAGTTGTTGTTGCTACTTTCACGTTGTTGTTGTTGTTGT--TGCGGCAGCTGCAGTTGCAGTTGCAGTTGCAATTGTTGCTGCAGCTGTTGGCCTAATGAGAGTGGCCAGCAATGCGGCACGAATC Size Hit Count Total Norm V105 Male body V106 Head V055 Unknown V039 Embryo .....................................TGCAGATAACGTAACAGTT......................................................................................................................... 19 1 2.00 0.00 1.00 0.00 1.00 ...................................................................TTTGACGTTGTTGTTGTTG........................................................................................... 19 4 0.50 0.00 0.00 0.00 0.50 .........................................................................GCTGTTGTTGTTGTTGT--TGCGGCGGC............................................................................ 26 1 2.00 0.00 2.00 0.00 0.00 .........................................................................................................GTTGCAGTGGCAGTTGAAA..................................................... 19 2 0.50 0.50 0.00 0.00 0.00 ........................................................................................................AGCTGAAGTTGCAGTTGCA...................................................... 19 32 0.03 0.03 0.00 0.00 0.00 .........GCA-----------------------GTTGCAGATAGAGATACA............................................................................................................................ 21 1 1.00 1.00 0.00 0.00 0.00 ...................................................................TTTGACGTTGTTGTTGTTT........................................................................................... 19 1 1.00 0.00 0.00 0.00 1.00 .........................................................................................................GTTGCAGTTGCAGTGGCC...................................................... 18 34 0.03 0.00 0.03 0.00 0.00 .............................................................................TTGTTGTAGTTGT--CGCGGC............................................................................... 19 4 0.25 0.25 0.00 0.00 0.00 ............................................................................GTTGTTGTTGTTGT--TGCGGG............................................................................... 20 10 0.10 0.00 0.10 0.00 0.00 .....................................TGCAGATAACGTAACAGT.......................................................................................................................... 18 1 1.00 0.00 0.00 0.00 1.00 ..........................................................................TTGTTGTTGTTGTTGT--TGG.................................................................................. 19 48 0.02 0.02 0.00 0.00 0.00 .........................................................................GTTATTGTTGTTGTTGT--TG................................................................................... 19 39 0.03 0.03 0.00 0.00 0.00 ............................................................................GTTGTTGTTGTTGT--TGCCA................................................................................ 19 21 0.05 0.00 0.05 0.00 0.00 ..........................................................................GTGTTGTTGTTGTTGT--TG................................................................................... 18 45 0.02 0.00 0.02 0.00 0.00 ..................................................................................................AGCTGAAGTTGCAGTTGCA............................................................ 19 32 0.03 0.03 0.00 0.00 0.00
3	scaffold_13337:19297598-19297720 +	51.19	TTTTGAGTCGAAAGGACCAACTTTGCTGGCATTCGGTGGCCAATAATGCAATTGCATGTCCTTGTTGCTGTTGCAAT----------GTTGCAGCTGGAATTGCAATTGCATTTCTAGTTGCCGCTGC---------TGCTGCTCGAGTGGCAATTAGCT--GGGTGTCTC T----------------------------------------------GCTGTTGC-TGTTCTAGTTTCTGTTGTAATTGTTGTTGCTGTTGGAGTTGAAGTTGCTGTTGCACTTGTAGTTGCTGTTGCAGTTGTAGTTGCTGTTGCAGTTGCTGTTG-CTGTTGCTGTTCC Size Hit Count Total Norm V105 Male body V106 Head V055 Unknown V039 Embryo ....................................................................................................TTGCCGTTGCATTTGTAGT.................................................... 19 2 1.00 0.50 0.00 0.50 0.00 ......................................................................................................................TTGCCGTTGCATTTGTAGT.................................. 19 2 1.00 0.50 0.00 0.50 0.00 ............................................................................................AGCTGAAGTTGCAGTTGCA............................................................ 19 32 0.03 0.03 0.00 0.00 0.00 ...................................................................................................................................................................GCTGTGTC 26 27 0.04 0.00 0.04 0.00 0.00 ................................................................................................................................................................GTTGCTGTTTC 24 27 0.04 0.00 0.04 0.00 0.00 ........................................................................GTGCTTGTTGTTGCTGTTGG............................................................................... 20 2 0.50 0.50 0.00 0.00 0.00 .....................................................................................CTGTTGGTGTTGAAGTCG.................................................................... 18 1 1.00 0.00 0.00 0.00 1.00 ........................................................................GTAATTGTTGTAGCTATTG................................................................................ 19 1 1.00 0.00 1.00 0.00 0.00 .......................................................................................................................................GTTGTTGTTGCAGTTGCTTTT............... 21 3 0.33 0.00 0.00 0.00 0.33 .........................................................................................................................................TGTTGTTGCAGTTGCTGTTG-GTG.......... 23 8 0.13 0.00 0.00 0.00 0.13
9	scaffold_13301:512-600 -	43.61	TTTTGAGTCGAAAGGACCAACTTTGCTGGCATTCGGTGGCCAATAATGCAATTGCATGTCCTTGTTGCTGTTGCAATGTTGCAGCTGGAATTGCAATTGCATTTCTAGTTGCCGCTGCTGCTGCTCGAGTGGCAA-TTAGCTGGGTGTCTC GTTGCAG---------------------------------------------------------TTGCAGTTGCA--GTTGCAGTTGCAGTTGCAGTTGCAGTTGCAGTTGCTGCTGCTGCTGAT---GTTGCAACTTTTTTAGGTGTTGC Size Hit Count Total Norm V105 Male body V106 Head V055 Unknown V039 Embryo .....................................................................GTTGCA--GTTGCAGTGGCC.............................................................. 18 34 0.03 0.00 0.03 0.00 0.00 ........................................................................................AGCTGAAGTTGCAGTTGCA............................................ 19 32 0.03 0.03 0.00 0.00 0.00 ....................................................................AGCTGAA--GTTGCAGTTGCA.............................................................. 19 32 0.03 0.03 0.00 0.00 0.00 .....AG---------------------------------------------------------CTGAAGTTGCA--GTTGCA.................................................................... 19 32 0.03 0.03 0.00 0.00 0.00 .........................................................................................GTTGCAGTTGCAGTGGCC............................................ 18 34 0.03 0.00 0.03 0.00 0.00 ..................................................................................AGCTGAAGTTGCAGTTGCA.................................................. 19 32 0.03 0.03 0.00 0.00 0.00 ..........................................................................A--GCTGAAGTTGCAGTTGCA........................................................ 19 32 0.03 0.03 0.00 0.00 0.00 .............................................................................GTTGCAGTTGCAGTGGCC........................................................ 18 34 0.03 0.00 0.03 0.00 0.00 ......G---------------------------------------------------------TTGCAGTTGCA--GTGGCC.................................................................... 18 34 0.03 0.00 0.03 0.00 0.00 GTTGCAG---------------------------------------------------------TTGCAGTGGCC--.......................................................................... 18 34 0.03 0.00 0.03 0.00 0.00 ...................................................................................GTTGCAGTTGCAGTGGCC.................................................. 18 34 0.03 0.00 0.03 0.00 0.00 ...............................................................................................GTTGCAGTTGCAGTGGCC...................................... 18 34 0.03 0.00 0.03 0.00 0.00
4	scaffold_13340:376744-376844 +	41.22	TTTTGAGTCGAAAGGACCAACTTTGCTGGCATTCGGTGGCCAATAATGCAATTGCATGTCCTTGTTGCTGTTGCA-ATGTTGCAGCTGGAATTGCAATTGCATTTCTAGTTGCCGCTGC--TGCTGCTCGAGTGGCAATTA-GCTGGGTGTCTC TGTT-----------------------------------------------------GCTGCTGCTGCTGCTGCTAATGTTGCTGCTGCGATGGCTTCTACTGCTGCTGCTGCTGCTGCCTTGCTGCTTGTGTGTGAACTGCGCCGTGCAACTA Size Hit Count Total Norm V105 Male body V106 Head V055 Unknown V039 Embryo ..............................................................................................CTTCTACTACTGCTGCTGCTGC...................................... 22 29 0.03 0.00 0.00 0.00 0.03 .........................................................................................................ACTGCTGCTGCTGCCGTGCTG............................ 21 5 0.20 0.00 0.20 0.00 0.00 ..............................................................TGCTGCTGCTGCTAATTG.......................................................................... 18 33 0.03 0.00 0.00 0.00 0.03 ..................................................................................................TACTGCCTCTGCTGCTGCT..................................... 19 50 0.02 0.00 0.02 0.00 0.00 .....................................................................................................TGCTACTGCTGCTGCTTCCT................................. 20 5 0.20 0.00 0.20 0.00 0.00
13	scaffold_13417:835671-835765 -	40.12	TTTTGAGTCGAAAGGACCAACTTTGCTGGC-ATTCGGTGGCCAATAATGCAATTGCATGTCCTTGTTGCTGTTGCAATGTTGCAGCTGGAATTGCAATTGCATTTCTAGTTGCCGCTGCTGCTGCTCGAGTGGCAATTAGCTGGGTGTCTC CGTT--------------------GCTGGTGATGCGGCGGC-----------------------------------ATGTTGTAGTTGGAATTGGAGTTGCTGCCGCTGCCGCTGCCACTGCCGCTCGTCTCGTAA-TACCTGGGCGTGCC Size Hit Count Total Norm V105 Male body V106 Head V055 Unknown V039 Embryo .............................GGATGCTGCGGC-----------------------------------ATGTTG..................................................................... 18 1 1.00 0.00 0.00 1.00 0.00 ..........................................................................................................CTGTCTCTGCCACTGCCGCT......................... 20 2 0.50 0.00 0.50 0.00 0.00
10	scaffold_13301:535-616 -	40.08	TTTTGAGTCGAAAGGACCAACTTTGCTGGCATTCGGTGGCCAATAATGCAATTGCATGTCCTTGTTGCTGTTGCAATGTTGCAGCTGGAATTGCAATTGCATTTCTAGTTGCCGCTGCTGCTGCTCGAGTGGCAATTAGCTGGGTGTCTC TT-------------------------------CAGTTGCCG---ATGCAGTTGCA-------GTTGCAGTTGCA--GTTGCAGTTGCAGTTGCAGTTGCAGTTGCAGTTGCTGCTGCTGCTGAT------------------------- Size Hit Count Total Norm V105 Male body V106 Head V055 Unknown V039 Embryo ...............................................................GTTGCAGTTGCA--GTGGCC................................................................... 18 34 0.03 0.00 0.03 0.00 0.00 ..................................................GTTGCA-------GTTGCAGTGGCC--......................................................................... 18 34 0.03 0.00 0.03 0.00 0.00 ...................................GTTGCCG---ATGCAGxAGCA-------GT..................................................................................... 19 1 1.00 0.00 1.00 0.00 0.00 ...............................................................................................GTTGCAGTTGCAGTGGCC..................................... 18 34 0.03 0.00 0.03 0.00 0.00 ...................................................................................GTTGCAGTTGCAGTGGCC................................................. 18 34 0.03 0.00 0.03 0.00 0.00 ....................................................................AGCTGAA--GTTGCAGTTGCA............................................................. 19 32 0.03 0.03 0.00 0.00 0.00 ..................................................................................AGCTGAAGTTGCAGTTGCA................................................. 19 32 0.03 0.03 0.00 0.00 0.00 ..........................................................................A--GCTGAAGTTGCAGTTGCA....................................................... 19 32 0.03 0.03 0.00 0.00 0.00 .............................................................................................................TGCTGCTGCTGCTAAT------------------------- 18 33 0.03 0.00 0.00 0.00 0.03 ........................................................................................AGCTGAAGTTGCAGTTGCA........................................... 19 32 0.03 0.03 0.00 0.00 0.00 .........................................................................................GTTGCAGTTGCAGTGGCC........................................... 18 34 0.03 0.00 0.03 0.00 0.00 .......................................................A-------GCTGAAGTTGCA--GTTGCA................................................................... 19 32 0.03 0.03 0.00 0.00 0.00 .....................................................................GTTGCA--GTTGCAGTGGCC............................................................. 18 34 0.03 0.00 0.03 0.00 0.00 .................................................AGCTGAA-------GTTGCAGTTGCA--......................................................................... 19 32 0.03 0.03 0.00 0.00 0.00 .............................................................................GTTGCAGTTGCAGTGGCC....................................................... 18 34 0.03 0.00 0.03 0.00 0.00
8	scaffold_13266:17767267-17767393 -	35.85	TTTTGAGTCGAAAGGACCA------------------------------------------------ACTTTGCTGGCATTCGGTGGCCAATAATGCAATTGCATGTCCTTGTTGCTGTTGCAATGTTGCAGCTGGAATTGCAATTGCATTTCTAGTTGCCGCTGCTGCTGCTCGAGTGGCAATTAGCTGGGTGTCTC TTCTGAAAGGGAAGAGCCTTAGATTATATTGAAGATTCTATTCTGGCACGGACCAGGACTCTGTCATACTCTAATCATATTTAAT----------ACATT---------------------TAGTATTATAGCTTAG---------------------TCCTTTGCTAGTCCTTCAGTG------------------- Size Hit Count Total Norm V105 Male body V106 Head V055 Unknown V039 Embryo ...TGAAAGGGAAGGGCATT.................................................................................................................................................................................. 17 1 12.00 0.00 0.00 12.00 0.00 .....AAAGGGAAGGGCCTTTG................................................................................................................................................................................ 17 1 8.00 0.00 0.00 8.00 0.00 ....GAAAGGGAAGAGCATTTGA............................................................................................................................................................................... 19 1 7.00 7.00 0.00 0.00 0.00 ....GAAAGGGAAGAGCATTTGAT.............................................................................................................................................................................. 20 1 3.00 3.00 0.00 0.00 0.00 ....GAAAGGGAAGGGCCTTTGAT.............................................................................................................................................................................. 20 1 3.00 3.00 0.00 0.00 0.00 ...TGAAAGGGAAGGGCAT................................................................................................................................................................................... 16 1 3.00 0.00 0.00 3.00 0.00 ...TGAAAGGGAAGAGCATTTG................................................................................................................................................................................ 19 1 3.00 3.00 0.00 0.00 0.00 ....GAAAGGGAAGGGCATT.................................................................................................................................................................................. 16 1 3.00 0.00 0.00 3.00 0.00 .....AAAGGGAAGGGCCTTTGA............................................................................................................................................................................... 18 1 3.00 3.00 0.00 0.00 0.00 .....AAAGGGAAGAGCATTTGA............................................................................................................................................................................... 18 1 2.00 1.00 0.00 1.00 0.00 .....AAAGGGAAGGGCATTAG................................................................................................................................................................................ 17 1 2.00 0.00 0.00 2.00 0.00 ...TGAAAGGGAAGAGCATTTGAT.............................................................................................................................................................................. 21 1 2.00 2.00 0.00 0.00 0.00 .....AAAGGGAAGGGCATTAGA............................................................................................................................................................................... 18 1 2.00 2.00 0.00 0.00 0.00 ....GAAAGGGAAGAGCATTTG................................................................................................................................................................................ 18 1 2.00 2.00 0.00 0.00 0.00 ...TGAAAGGGAAGAGCATTT................................................................................................................................................................................. 18 1 2.00 2.00 0.00 0.00 0.00 ....GAAAGGGAAGAGCATTT................................................................................................................................................................................. 17 1 1.00 0.00 0.00 1.00 0.00 ....GAAAGGGAAGGGCGTTAG................................................................................................................................................................................ 18 1 1.00 0.00 0.00 1.00 0.00 ......AAGGGAAGGGCATTAGAT.............................................................................................................................................................................. 18 1 1.00 0.00 0.00 1.00 0.00 .....AAAGGGAAGGGCATTAGAT.............................................................................................................................................................................. 19 1 1.00 1.00 0.00 0.00 0.00 .....AAAGGGAAGAGCATTAGA............................................................................................................................................................................... 18 1 1.00 0.00 0.00 1.00 0.00 ...TGAAAGGGAAGAGCATTTGA............................................................................................................................................................................... 20 1 1.00 1.00 0.00 0.00 0.00 ...TGAAAGGGAAGGGCCTTT................................................................................................................................................................................. 18 1 1.00 0.00 0.00 1.00 0.00 .....AAAGGGAAGCGCCTTTG................................................................................................................................................................................ 17 1 1.00 0.00 0.00 1.00 0.00 .....AAAGGGAAGAGCATTTG................................................................................................................................................................................ 17 2 0.50 0.00 0.00 0.50 0.00 ............................................................................ATACTTCAT----------ACATT---------------------TAGT......................................................................... 18 1 1.00 0.00 0.00 0.00 1.00 ....GAAAGGGAAGGGCATTAGAT.............................................................................................................................................................................. 20 1 1.00 1.00 0.00 0.00 0.00 ..TTGAAAGGGAAGGGCCTT.................................................................................................................................................................................. 18 1 1.00 1.00 0.00 0.00 0.00 .................CTTGGATTxTATTGAAGA................................................................................................................................................................... 17 2 0.50 0.00 0.00 0.50 0.00 ..........................................CTGGCACGGACTTGGA............................................................................................................................................ 16 1 1.00 0.00 0.00 1.00 0.00 ...TGAAAGGGAAGCGCAT................................................................................................................................................................................... 16 1 1.00 0.00 0.00 1.00 0.00 .....AAAGGGAAGGGCCTTAGATC............................................................................................................................................................................. 20 1 1.00 0.00 0.00 1.00 0.00 ......AAGGGAAGGGCCTTTGA............................................................................................................................................................................... 17 1 1.00 0.00 0.00 1.00 0.00 ....GAAAGGGAAGGGCCTTTG................................................................................................................................................................................ 18 1 1.00 0.00 0.00 1.00 0.00 ......AAGGGAAGCGCCTTTGA............................................................................................................................................................................... 17 1 1.00 0.00 0.00 1.00 0.00

droBip1 - 4 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000396006:46261-46375 +	52.47	TTTTGAGTCGAAAGGACCAACTTTGCTGGCATTCGGTGGCCAATAATGCAATTGCATGTCCTTGTTGC---TGTTGCAA-------TGTTGCAGCTGGAATTGCAATT---GCATTTCTAGTTGCCGCTGCTGCTGCTCGAGTGGCAATTAGCTGGGTGTCTC T----------------------------------------------GCACTTGC-TGTACCTGTTGCACATGTTGCACCTGTTGCTGCTGCTGCTGCACTTGCACTTGCTGCACTTGCACTTGCTGTTGCTGCTGCTGAGGTGGCAGATAGCCGGGTGC-TT Size Hit Count Total Norm
4	scf7180000396735:1036128-1036249 -	36.27	TTTTGAGTCGAAAGGACCAACTTTGCTGGCATTCGGTGGCCAATAATGCAATTGCATGTCCTTGTTGCTGTTGCAATGTTGCAGC-------TGG----AATTGCAATTGCATTTCTAGTTGCCGCTGCTGCTGCTCGAGTGGCAATTAGCTGGGTGTCTC TCTGGAAGGGAAGGGTTTTAGA------GTCCTTGGG--------------------------------GTTGAAATTTTAAATCGTTTAGATGTTGCCCATCCATATTGTATATATTATTATTGCTTAGTCCTTTCTAGGA-TCTTAAGTTTTGTGCATT Size Hit Count Total Norm
2	scf7180000394085:596645-596727 -	32.53	TTTTGAGTCGAAAGGACCAACTTTGCTGGCATTCGGTGGCCAATAATGCAATTGCATGTCCTTGTTGCTGTTGCAATGTTGCAGCTGGAATTGCAATTGCATTTCTAGTTGCCGCTGCTGCTGCTCGAGTGGCAATTA-GCTGGGTGTCTC TT---------------------------------------------------GGTTGGTGTTGTTGCTGCT--AATGTTGCTGCTGCGACTGC---------------TTCTGCTGCTGCTGCTTGTGTGTGAACTGCGCCGTGCAACTA Size Hit Count Total Norm
3	scf7180000396728:2210566-2210636 -	29.78	TTTTGAGTCGAAAGGACCAACTTTGCTGGCATTCGGTGGCCAATAATGCAATTGCATGTCCTTGTTGCTGTTGCAATGTTGCAGCTGGAATTGCAATTGCATTTCTAGTTGCCGCTGCTGCTGCTCGAGTGGCAATTAGCTGGGTGTCTC ---------------------------------------------------------------GTTGCTGTTGC-----TGCTGCTGCTGTTGCTGTAGGAGTTGCTGTTGCTGCTGCTGCTGCTGGAGTTGCTGTT-----------GC Size Hit Count Total Norm

dp4 - 5 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
14	chrXL_group3a:862470-862596 -	53.38	TTTTGAGTCGAAAGGACCAACTTTGCTGGCATTCGGTGGCCAATAATGCAATTGCATGTCCTTG-------------------------TTGCTGTTGCAATGTTGCAGCTGGAATTGCAATTGCATTTCTAGTTGCCGCTGCTGCTGCTCGAGTGGCAATTAGCTGGGTGTCTC ------------------AACTCTGCTGCCAGTAGTTGGCCATTGAGAAAATTGTGTGCCCTGGAATTTAATTCATTGCAAACAAATTGCTGCTGCTGC-----------------TGCTGCTGCTGCTGTTGTTGCTGCTGCTGCCGTTGCAGTGGCAATT------------- Size Hit Count Total Norm V112 Male body V043 Embryo V051 Head M022 Male body ...........................................................................................................................................CTGCTGCCGATGCTGTGGC................. 19 18 0.06 0.00 0.00 0.06 0.00
8	chr3:3450111-3450236 -	48.73	TTTTGAGTCGAAAGGAC-CAACTTTGCTGG-CATTCGGTGGCCAATAATGCAATT-----GCATGTCCTTGTTGCTGTTGCAATGTTGCAGCTGGAATTGCAATTGCATTTCTAGTTGCCGCTGCTGCTGCTCGAGTGGCAATTAGCTGGGTGTCTC TGTTGCATGAAGAGGACCCAACTTTCCAGGAGATTTTCTGGCAGCTAATGCAATTGTGGTGCATAGTTTCGGAGCTGTGGCATTCTCACAG------------------------------TTGCTGCAGCTCAAGTGGCAATTAGAAGGATCTGG- Size Hit Count Total Norm V112 Male body V043 Embryo V051 Head M022 Male body ...................................................................TTCGGGGCTGTGGAATTCTC...................................................................... 20 1 1.00 0.00 0.00 0.00 1.00
11	chrXL_group1e:11474296-11474446 -	48.4	TTTTGAGTCGAAAGGACCAACTTTGCTGGCATTCGGTGGCCAATAATGCAATTGCATGTCCTTGTTGCTGTTGCAATGTTGCAGCTGGAATTGCAATTGCATTTCTAGTTGCCGCTGCTGCTGCTCGAG---TGGCAATT---------AGCTGGGTGTCTC CCACAACACTTCGGGGGCATGTTAAATGTCATTTAATAGTTGACAGT-----T----GCACTTGCTGTTGTTGCT--GCTGTTTTTGCTGTTGCTGTTGCTGTTTCTGTTTCTGCTGTTGCTGCTATGATTATTGCAGTTTATTTTTTGTACCGAGTATCTA Size Hit Count Total Norm V112 Male body V043 Embryo V051 Head M022 Male body ................................................................CTCTGGTTGCT--GCTGTTTT............................................................................. 19 1 5.00 3.00 0.00 2.00 0.00 ...............................................................................TGTTTTGGCTGxTGCTGTT................................................................ 18 4 0.25 0.00 0.00 0.00 0.25 ................................................................................................................TGCTGTTGCTGATTTGATT............................... 19 1 1.00 0.00 1.00 0.00 0.00 .............................................................TAGCTGTTGTTGCT--GCTGTGTT............................................................................. 22 1 1.00 0.00 1.00 0.00 0.00 .................................................................................TTTGTGCTGTTGCTGTTGCC............................................................. 20 2 0.50 0.00 0.00 0.00 0.50 ..........................................................................................TTGCTGTTTCTGTTTCTGTT.................................................... 20 17 0.06 0.06 0.00 0.00 0.00 ..............................................................TGCTGTTGTTGCT--GCTTTTTC............................................................................. 21 31 0.03 0.00 0.00 0.03 0.00 ....................................................................................TTGCTGTTTCTGTTTCTGTT.......................................................... 20 17 0.06 0.06 0.00 0.00 0.00 ....................................................................................GTGCTGTTGCTATTGCTGTT.......................................................... 20 47 0.02 0.02 0.00 0.00 0.00 ................................................................................................TTGCTGTTTCTGTTTCTGTT.............................................. 20 17 0.06 0.06 0.00 0.00 0.00
6	chrXL_group1e:5170076-5170180 +	44.12	TTTTGAGTCGAAAGGACCAACTTTGCTGGCATTCGGTGGCCAATAATGCAATTGCATGTCCTTGTTGCTGTTGCAATGTTGCAGCTGGAATTGCAATTGCATTTCTAGTTGCCGCTGCTGCTGCTCGAGTGGCAATTAGCTGGGTGTCTC TGCTG-----------------TTGCTGATACT--------------GCT----GATGCTGATGCTGCTGT-----CGTTGCAGTTGCAGTTGCAACTGCACTTGCAGTTGCAGTTGCTGATGTTGATGTTGCAGTT-----GCTGTTTC Size Hit Count Total Norm V112 Male body V043 Embryo V051 Head M022 Male body ...................................................................................................................TGCTGATGATGATGTTGT................. 18 16 0.31 0.00 0.31 0.00 0.00 ................................................CT----GCTGCCGATGCTGCTGT-----C......................................................................... 20 35 0.11 0.00 0.00 0.11 0.00 .................................................................................................................GTTGCTGATGTTCCTGTT................... 18 48 0.02 0.00 0.02 0.00 0.00 ........................................................TGCTGAxGCTGCTCT-----CGTT...................................................................... 18 1 1.00 0.00 1.00 0.00 0.00 .......................................................................................CAGTTGCAGCTGCAGTTGC............................................ 19 19 0.05 0.00 0.05 0.00 0.00 ............................................................................CGTTGCCGTTGCAGTTGCAG...................................................... 20 11 0.09 0.00 0.09 0.00 0.00 ................................................CG----GATGCCGATGCTGCTGT-----.......................................................................... 19 4 0.25 0.00 0.00 0.25 0.00 ................................T--------------GCT----GATGCTGATCCTGCCGT-----.......................................................................... 21 1 1.00 1.00 0.00 0.00 0.00 .................................................................................................................GTTGATGATGATGATGTT................... 18 27 0.04 0.00 0.04 0.00 0.00 ................................................CT----GGTGCCGATGCTGCTGT-----.......................................................................... 19 26 0.04 0.00 0.00 0.04 0.00 ................................................CT----GATGCTGATGCTGCTGC-----CT........................................................................ 21 17 0.06 0.00 0.06 0.00 0.00 ..........................................................CTGATGCTGCCAT-----CGTTGC.................................................................... 19 1 1.00 0.00 1.00 0.00 0.00 .................................................................................................................................TTGCTGTT-----TCTGTTTC 20 17 0.06 0.06 0.00 0.00 0.00 ..........................................................................................................AGTTGCAGTTGCAGGTGT.......................... 18 14 0.07 0.00 0.07 0.00 0.00 ...................................................................................................CAGTTGCAGCTGCAGTTGC................................ 19 19 0.05 0.00 0.05 0.00 0.00
3	chr4_group3:3729803-3729880 +	29.73	TTTTGAGTCGAAAGGACCAACTTTGCTGGCATTCGGTGGCCAATAATGCAATTGCATGTCCTTGTTGCTGTTGCAATGTTGCAGCTGGAATTGCAATTGCATTTCTAGTTGCCGCTGCTGCTGC--------TCGAGTGGCAATTAGCTGGGTGTCTC AT----------------------GCTGGTGT------------------------TGCCACTGCTGCTG--------------------------TTGCTGTTGTTGCTGCTGTTGCTGCTGCATCGACGGCTGTGTGGCATACAGCTG-------- Size Hit Count Total Norm V112 Male body V043 Embryo V051 Head M022 Male body ..................................................................................................GCTCTGGTTGCTGCTGTTGC........................................ 20 36 0.19 0.19 0.00 0.00 0.00 ...................................................................................................CTGTGGTTGCTGCTGTTGCG....................................... 20 40 0.08 0.08 0.00 0.00 0.00 ...................................................................................................CTGTGGTTGCTGCTGTTGC........................................ 19 37 0.08 0.05 0.00 0.03 0.00 ................................................................................................TTTCTGTTGTTGCTGCTGTTG......................................... 21 10 0.10 0.10 0.00 0.00 0.00 ........................................................................................................................CTGCATCGACCGCTGTGT.................... 18 1 1.00 0.00 1.00 0.00 0.00 .................................................................................................TGCTGTTGTTGCTGCTTTTTC........................................ 21 31 0.03 0.00 0.00 0.03 0.00 ..........................................................................................................TGCTGCTGTTGCTGCTGCTTCG.............................. 22 42 0.02 0.00 0.00 0.02 0.00 ........................................................................................................................CTGCATCGACCGCTGTGTGG.................. 20 1 1.00 1.00 0.00 0.00 0.00 ....................................................................................................TGTGGTTGCTGCTGTTGC........................................ 18 49 0.02 0.02 0.00 0.00 0.00