Possible Orthologs for dme-mir-4978

droSim1 - 12 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1313	chr2R:8329883-8330063 -	92.4	CGGAAAAGCCAAGGCGGACTTTCCACTTTTC---GTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC CGGAAAATCCAAGGCGCACTTTCCACCTTTCCACGTCTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCCGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCGCACAGCTCGCACAAATTTTC Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo .....................................................................................CGAGCTGGGCGCCxAATCCGA........................................................................... 20 2 0.50 0.50 0.00 0.00 0.00 .........................................................................................................AATTGCGAGAAAGAGACG.......................................................... 18 2 0.50 0.00 0.00 0.50 0.00
1314	chr2R:8329896-8330077 -	44.04	--------------CGGAAAAGCCAAGGCGGACTTTCCACTTTTC---GTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC ATGCAAAGCTGGGGCGGAAAATCCAAGGCGCACTTTCCACCTTTCCACGTCTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCCGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCGCACAGCT------------- Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo ...................................................................................................CGAGCTGGGCGCCxAATCCGA........................................................................... 20 2 0.50 0.50 0.00 0.00 0.00 .......................................................................................................................AATTGCGAGAAAGAGACG.......................................................... 18 2 0.50 0.00 0.00 0.50 0.00
113	chr2R:5498495-5498613 +	36.53	CGGAAAAGCCAAGGCGGACTTTCCACTTTTCGT-TTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATT------------GCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC T----------------------------CCGCTTGTGCTGCTCTTGCAGAGCTTTTGTTCTACCCTTCTGGCCAAGTGGATGTTATAACTTGG--------------TAATTCGATTTGCACAAAGTATTTTCCCTGCGAGCCAAGCGACAGAGAAAGGC------------------------------ Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo
1841	chr3R:18912184-18912302 -	32.98	CGGAAAAGCCAAGGCGGACTTTCCACTTTTCGTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC GTGCTGCGGTGCGGCGGCATTG----TCTCCTTGTGGCTGGCCTCGTGCGGTTGCCACGTTCTTGCCCCTTCTCCGCTCGCCGTTGCCTGGCGTGTGGCAAGAAATGTGAAAGATAAACGATT------------------------------------------------------- Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo
368	chr3L:9251658-9251726 +	21.02	CGGAAAAGCCAAGGCGGACTTTCCACTTTTCGTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC --------------------------------TTTACTTAGTTTAAACTGAATTTCTTTCTGTGCTGTAGCCACGCTTCAATGGAGTTGGGCGGCCAATCC----------------------------------------------------------------------------- Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo ............................................................................TTCAACGGAGTTGGGCGC.................................................................................... 18 1 2.00 0.00 0.00 0.00 2.00
179	chr2R:10350560-10350606 +	16.48	CGGAAAAGCCAAGGCGGACTTTCCACTTTTCGTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC -----------------------------------------------------------------------------------------------------------------------------------AAAAGCCATTGTTCAGTTTCGCAGCCAGTCAGTTCGTTCGCGTTTTC Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo
1124	chr2L:3297804-3297854 -	15.81	CGGAAAAGCCAAGGCGGACTTTCCACTTTTCGTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC TCCAAT---------------------------------------------------------------------------------------------------------------------------CCAATTGTCTTCGACAAGTT----AGGAATACACCCGAAACAATTTTTT Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo .........................................................................................................................................CTTCGACAAGTT----AGGAATACACCC............. 24 1 1.00 0.00 0.00 0.00 1.00 ............................................................................................................................................CGACAAGTT----AGGAATACACCCGA........... 23 1 1.00 0.00 0.00 1.00 0.00 .CCAAT---------------------------------------------------------------------------------------------------------------------------CCAATTGTCTTCGAC.................................. 20 1 1.00 0.00 0.00 0.00 1.00
417	chr3L:16933584-16933619 +	13.07	CGGAAAAGCCAAGGCGGACTTTCCACTTTTCGTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC AGGAAAAGCCAATGGAAAACGTCCAGCCTCAGTTTG---------------------------------------------------------------------------------------------------------------------------------------------- Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo
612	chr3R:24422524-24422542 +	7.39	CGGAAAAGCCAAGGCGGACTTTCCACTTTTCGTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC AAGAACAAACTAGGCGGAC--------------------------------------------------------------------------------------------------------------------------------------------------------------- Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo		None
236	chr2R:18690429-18690437 +	4.55	CGGAAAAGCCAAGGCGGACTTTCCACTTTTCGTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTTCC Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo	None	None
229	chr2R:17368187-17368195 +	3.98	CGGAAAAGCCAAGGCGGACTTTCCACTTTTCGTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTTTTC Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo	None	None
131	chr2R:8077016-8077027 +	3.41	CGGAAAAGCCAAGGCGGACTTTCCACTTTTCGTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC AAACTCAGCCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo	None	None

droSec1 - 16 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1404	super_1:7418494-7418674 -	91.87	CGGAAAAGCCAAGGCGGACTTTCCACTTTTC---GTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC CGGAAAAGCCAAGGCGCACTTTCCACCTTTCCACGTCTGGCTGGCCTGGAAAAGCTATCTTTCTCTATTACCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTCCGAGCCAAAAACCATCGAAATGCCTGGCAAGCACACAGCTCGCACAAATTTTC Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head .............................................................................................................................................................AGCACACAGCTCGGAGAA...... 18 2 0.50 0.00 0.50 0.00
1517	super_2:5218817-5218995 -	43.72	CGGAAAAGCCAAGGCGGACTTTCCACTTTTCGTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATT--------GCGAGAA-----AGATC--------------------------------------------------CGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC -----AAGCCGAAACGAATCTGCCAG----------GCTGAGCTGAG--------------------------------------------GCCTTACTCAAAAACCTTACTCAATGAGAAATTCAGAATCCATTCGACGATTGTCAAGTTCAGTTACAAACGCCTTTTCCTCATTTTGCGCACCACAAAAGCGGAAAGCGACCACAGAGCCCCAAGCACACAGAGATTGCCGGAGA---- Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head ............................................................................................................................................................................................................ACAGAGCCCCAACCACACAC................. 20 1 1.00 0.00 1.00 0.00 ......................................................................................................................................................................TATCCTCAxTTTGCGCACC........................................................ 18 1 1.00 0.00 0.00 1.00
1407	super_1:7418507-7418688 -	42.55	--------------CGGAAAAGCCAAGGCGGACTTTCCACTTTTC---GTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC ATGCAAAGCTGGGGCGGAAAAGCCAAGGCGCACTTTCCACCTTTCCACGTCTGGCTGGCCTGGAAAAGCTATCTTTCTCTATTACCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTCCGAGCCAAAAACCATCGAAATGCCTGGCAAGCACACAGCT------------- Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head
1410	super_1:7418481-7418669 -	42.16	CGGAAAAGCCAAGGCGGACTTTCCACTTTTC---GTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC------------- -----AAGCCAAGGCGCACTTTCCACCTTTCCACGTCTGGCTGGCCTGGAAAAGCTATCTTTCTCTATTACCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTCCGAGCCAAAAACCATCGAAATGCCTGGCAAGCACACAGCTCGCACAAATTTTCCGCCCAGAGCCAC Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head .............................................................................................................................................................AGCACACAGCTCGGAGAA................... 18 2 0.50 0.00 0.50 0.00
180	super_1:4525243-4525361 +	36.53	CGGAAAAGCCAAGGCGGACTTTCCACTTTTCGT-TTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATT------------GCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC T----------------------------CCGCTTGTGCTGCTCTTGCAGAGCTTTTGTTCTACCCTTCTGGCCAAGTGGATGTTATAACTTGG--------------TAATTCGATTTGCACAAAGTATTTTCCCTGCGAGCCAAGCGACAGAGAAAGGC------------------------------ Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head ........................................GCCCTTGCTGAGCTTTTG..................................................................................................................................... 18 1 1.00 0.00 1.00 0.00 ..............................................................ACCGTTTTGGCCAAGTGGA.............................................................................................................. 19 1 1.00 0.00 1.00 0.00 .......................................................................................AACTTTG--------------TAATTCGCTTTG....................................................................... 19 1 1.00 0.00 1.00 0.00
2222	super_23:390534-390669 -	34.24	CGGAAAAGCCAAGGCGGACTTTCCACTTTTCGTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCT----ATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC AAAATCA----------ATCTCTCGCTCGTCCTTTG-------------AGCTCCAGTTCTCGCCTTGT-------------------TGTTGGGAGCTAAGTCTGTCTTCCAATG--GAACTGCTTGTTGCGGCCAGGGGCGCAGAAGGGCCG--AAAAAAAGGGGATCGCTTAAGTTCT- Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head .......................................................................................................................AACTGCTTGTGGCGGCCA............................................. 18 1 1.00 0.00 1.00 0.00 .......................................................................................................................AACTGGTTGTGGCGGCCA............................................. 18 1 1.00 0.00 1.00 0.00
2189	super_22:238813-238919 -	32.61	CGGAAAAGCCAAG-----GC-GGACTTTCCACTTTTCGTTTGGCTGGCCTGGAAAAGCTCTCTTTC--TCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC GGGAAAAGTGAAGAAAACGTAGGTCTGCCAGCGTGAAATGTGGCGCGCACAGAAAAGCGATTTTCCATGCAAATGACGCA--CATTTGGCGGCGCCGGC-TCCAGATCCG---------------------------------------------------------------------------- Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head ......ATTGAAGAAAAxGTAGGTC................................................................................................................................................................. 18 1 1.00 0.00 0.00 1.00 .........................................................................CGATGCA--CATTTGGCGGC............................................................................................. 18 1 1.00 0.00 1.00 0.00
15	super_0:2100320-2100392 +	22.16	CGGAAAAGCCAAGGCGGACTTTCCACTTTTCGTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC ----------------------------TTAACTTAGTTAGTTTAAACTGAATTTCTTTCTGTGCTGGAGCCACGCTTCAATGGAGTTGGGCGGCCAATCC----------------------------------------------------------------------------- Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head
90	super_0:16969925-16969981 +	19.89	CGGAAAAGCCAAGGCGGACTTTCCACTTTTCGTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC -------------GCGAGCTGGCCACTCTCCTTCCAGCCCGCCCCCTCACTCTCTCTTTCTCTCTCGCTT------------------------------------------------------------------------------------------------------------ Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head
241	super_1:9108097-9108143 +	16.48	CGGAAAAGCCAAGGCGGACTTTCCACTTTTCGTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC -----------------------------------------------------------------------------------------------------------------------------------AAAAGCCATTGTTCAGTTTCGCAGCCAGTCAGTTCGTTCGCGTTTTC Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head
1281	super_0:14757751-14757772 -	8.52	CGGAAAAGCCAAGGCGGACTTTCCACTTTTCGTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC TGGAAAG-----------------------------------------------------------------------------------------------------------------------GAGCCAAAAAGGATT------------------------------------- Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head
486	super_4:3590230-3590248 +	7.39	CGGAAAAGCCAAGGCGGACTTTCCACTTTTCGTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC AAGAACAAACTAGGCGGAC--------------------------------------------------------------------------------------------------------------------------------------------------------------- Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head		None
536	super_5:1580683-1580700 +	7.39	CGGAAAAGCCAAGGCGGACTTTCCACTTTTCGTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC CGGCTAAACGAAGCCGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------- Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head		None
451	super_4:1770745-1770762 +	5.68	CGGAAAAGCCAAGGCGGACTTTCCACTTTTCGTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC CAAAAAAAAAAAAACCGA---------------------------------------------------------------------------------------------------------------------------------------------------------------- Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head		None
179	super_1:4517642-4517660 +	5.11	CGGAAAAGCCAAGGCGGACTTTCCACTTTTCGTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC CGCCCACATTAAAGCAAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------- Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head		None
630	super_9:2070175-2070183 +	3.98	CGGAAAAGCCAAGGCGGACTTTCCACTTTTCGTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTTTTC Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head	None	None

droYak2 - 11 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
211	chr2R:7060227-7060403 +	96.08	CGGAAAAGCCAAGGCGGACTTTCCACTTTTCGTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC CGGAAAAGCCAAGGTGGACTTTCCACTTTTCGTTTGTCTGGCCTGGAAAAGCTCTCTTTCTCTATT-CCTCTATGGCTCGCCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAATAGCCCGGCAAGCACACAGCTCGCACAAATTTTC Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head ...................................GTCTGGCCTGGTAATGCT............................................................................................................................. 18 1 1.00 1.00 0.00 0.00 0.00 0.00 .....................................................................................................GAATTGCGAGAGAGATCGG.......................................................... 19 1 1.00 0.00 0.00 1.00 0.00 0.00 ...............................................................................................................................AGCCAAAAACGATCGAAGA................................ 19 1 1.00 0.00 0.00 1.00 0.00 0.00
2025	chr2R:10244134-10244219 -	26.14	CGGAAAAGCCAAGGCGGACTTTCCACTTTTCGTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC C------------------------------------------TATAACAGAGTTCTTTCTATACTCCCACTAAAATTAATCAACAATATGCGCCCAGTTTAGTTCACGGGCGATATGGCCTGTCCGA-------------------------------------------------- Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head
881	chr3R:18074095-18074158 +	22.16	CGGAAAAGCCAAGGCGGACTTTCCACTTTTCGTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC ---------------------------------------------------------------------------GCCTGGGAGAACAGTGGACCTGGCCTGGGATCCGAGTAAGTTCCGCTTCTCTAGACAGCACCCA--------------------------------------- Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head
583	chr3L:9843955-9844024 +	20.81	CGGAAAAGCCAAGGCGGACTTTCCACTTTTCGTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC A-------------------------------------------------GATTTCTTTCTGTGCTGCAGCCACGCTCCATTGGAGTTGGGCGGCCAATCC----------------CGGACTTTCTGGCCAAAA------------------------------------------- Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head
2367	chr3L:10967056-10967083 -	9.09	CGGAAAAGCCAAGGCGGACTTTCCACTTTTCGTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC GGGGAAGGGTAGATGGGTCTTGCCATTT------------------------------------------------------------------------------------------------------------------------------------------------------ Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head
1789	chr2L:7425891-7425910 -	7.39	CGGAAAAGCCA---AGGCGGACTTTCCACTTTTCGTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC CGGGGAGGCAAGCTAGGCGG----------------------------------------------------------------------------------------------------------------------------------------------------------------- Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head		None
2444	chr3L:15329531-15329548 -	6.82	CGGAAAAGCCAAGGCGGACTTTCCACTTTTCGTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC TGGAAAAACTGAAGCAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------- Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head		None
3057	chrX:7002406-7002423 -	6.44	CGGAAAAGCCAAGGCGGACTTTCCACTTTTCGTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC GAAAAAGCCTGAGGGGA----------------------------------------------------------------------------------------------------------------------------------------------------------------- Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head		None
803	chr3R:11239262-11239276 +	5.11	CGGAAAAGCCAAGGCGGACTTTCCACTTTTCGTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC AGGAGCAGAAAAGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------- Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head	None	None
1788	chr2L:7425689-7425696 -	2.27	CGGAAAAGCCAAGGCGGACTTTCCACTTTTCGTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC AACAGAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head	None	None
1003	chr3R:25784052-25784056 +	2.27	CGGAAAAGCCAAGGCGGACTTTCCACTTTTCGTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC CGCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head	None	None

droEre2 - 13 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1356	scaffold_4845:15928216-15928392 +	96.08	CGGAAAAGCCAAGGCGGACTTTCCACTTTTCGTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC CTGAAAAGCCAAGGCGGACTTTCCACTTTTCGTCTGGCTGGCCTGGAAAAGCTCTCTTTCTCTAT-GCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAATAGCCGTGCAAGCACACAGCTCGCACAAATTTTC Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head ........................................GCCTGGAAAAGCTCTCTTTCT..................................................................................................................... 21 1 1.00 0.00 0.00 0.00 1.00
3203	scaffold_4929:18357430-18357564 -	31.11	CGGAAAAGCCAAG-GCGGACTTTCCACTTTTCGTTTGGCTGGCCTGGAAAAG---CTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATT-GCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC TGGAGATCACAGACGGCCACGCCCTGCTCTCGCCCCCGCCGCCTTCGCACTCGCACTCCCACTCCCCGT---------------------------------------TCGACAACAAGGATCACGTCAAGGAGCTG-GAGTTCTACAAGAACCTGGCGGCCAAG--------GCCGCCTCCC Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head .............................................................................................................................TTCAAGGAGCTG-CAGTTCT...................................... 19 1 1.00 0.00 0.00 0.00 1.00 ..............................................................................................................................TCAAGGAGCTG-CAGTTCTT..................................... 19 1 1.00 0.00 0.00 0.00 1.00 .........AAGACGACCACGCCCTGCT........................................................................................................................................................... 19 1 1.00 0.00 0.00 0.00 1.00 ..........................................................................................................................AACGTCAAGGCGCTG-GAG.......................................... 18 1 1.00 0.00 0.00 0.00 1.00
946	scaffold_4784:8551599-8551690 +	27.27	CGGAAAAGCCAAGGCGGACTTTCCACTTTTCGTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC CGTCAAAATCAGTTGCAAGTTTATGGGCACCGCCTGGCTGAACTATCGCACCGCCCGATCTTTATTTGCCATTATGCTCGGCTGCACTTGGC-------------------------------------------------------------------------------------- Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head
968	scaffold_4784:9857698-9857777 +	25.0	CGGAAAAGCCAAGGCGGACTTTCCACTTTTCGTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC ---------------------TTTATTTTTGTCAAAGTTAGCTTGAGCTAGATTTCTTTCTGTGCTGGAGCCACGCTTCAATGGAGTTGGGCGGCCAATCC----------------------------------------------------------------------------- Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head ..............................GTTAAAGTTAxCTTGAGCT................................................................................................................................. 18 1 1.00 0.00 0.00 0.00 1.00
1558	scaffold_4929:13850519-13850580 +	21.02	CGGAAAAGCCAAGGCGGACTTTCCACTTTTCGTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC GGTAAATGCCAGCAGAAACTTTCCATATCTCCTTTATTTGCCTGGGCCATGCTATTTTTCGC-------------------------------------------------------------------------------------------------------------------- Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head
1033	scaffold_4784:14824281-14824328 +	17.61	CGGAAAAGCCAAGGCGGACTTTCCACTTTTCGTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC ------------------------------------GTTGGCTCGGAAAAGCTTTCTTTCCTTTTTATTTTTTGTGTTGGACAG---------------------------------------------------------------------------------------------- Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head ............................................................CTTTTTxTTTATTGTGTTG................................................................................................... 18 1 1.00 0.00 0.00 0.00 1.00
1839	scaffold_4690:8549700-8549741 -	17.05	CGGAAAAGCCAAGGCGGACTTTCCACTTTTCGTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC ---------------------------TTTCGTTTGGCTGCATTCGAAGAGCTCCCTATTGCTCCTGGC------------------------------------------------------------------------------------------------------------- Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head ...............................GTTTCGCTGCATTxGAAGAGC.............................................................................................................................. 20 1 1.00 0.00 0.00 0.00 1.00
1733	scaffold_4690:4653793-4653835 -	13.07	CGGAAAAGCCAAGGCGGACTTTCCACTTTT-CGTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC CAAAAACAAGAGTGCGACTTTCAGACTTTGCGACTTGGCCAAC---------------------------------------------------------------------------------------------------------------------------------------- Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head
2973	scaffold_4929:297108-297141 -	11.36	CGGAAAAGCCAAGGCGGACTTTCCACTTTTCGTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC AGCAGCAGCCAACGTCCAATTTCAATTGTTTTTT------------------------------------------------------------------------------------------------------------------------------------------------ Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head .............GTCCAATTTTTATTGTTTTT................................................................................................................................................. 20 1 1.00 1.00 0.00 0.00 0.00
3004	scaffold_4929:3537647-3537671 -	7.39	CGGAAAAGCCAAGGCGGACTTTCCACTTTTCGTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC TGTGAGTGCTAGAAGATACTTTCCA--------------------------------------------------------------------------------------------------------------------------------------------------------- Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head		None
2512	scaffold_4820:788353-788369 -	5.11	CGGAAAAGCCAAGGCGGACTTTCCACTTTTCGTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC AG-----------------------------------------------------------------------------------------------------------------------------------------------------------------ACCTCCCAACCAGTC Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head	None	None
2358	scaffold_4784:10951369-10951380 -	3.98	CGGAAAAGCCAAGGCGGACTTTCCACTTTTCGTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC AGGGGGGGCCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head	None	None
1035	scaffold_4784:15133327-15133334 +	3.98	CGGAAAAGCCAAGGCGGACTTTCCACTTTTCGTTTGGCTGGCCTGGAAAAGCTCTCTTTCTCTATTGCCTCTATGGCTCGGCAGCGCTGGGCGCCTAATCCGAATTGCGAGAAAGATCCGCTTTTCGAGCCAAAAACCATCGAAAAGCCTGGCAAGCACACAGCTCGCACAAATTTTC GGGAAAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head	None	None