Possible Orthologs for dme-mir-4977

droSim1 - 6 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

chrU:460991-461115 -

89.55

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG TT-----------TTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGTTCAAGTCTTGCACCGTTCCAAAAGAGAGCAACACGTGGAGCGACGAGCACGGCCGTACAATACCCAAG	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
.........................................................................TCTTGCACCGTTCCAAAAGAGAG........................................	23	1	1.00	1.00	0.00	0.00	0.00
..................................................................GTTCAAGACTAGCACCGT....................................................	18	1	1.00	0.00	0.00	1.00	0.00
..........................................................................CTTGCACCGTTCCAAAAGAGAG........................................	22	1	1.00	1.00	0.00	0.00	0.00
.............................................................................................GAGCAACACGTGAAGCGGC........................	19	1	1.00	1.00	0.00	0.00	0.00

chr3L:13356781-13356855 +

30.6

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAA------AGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCC--AAG -------------------------------------------------------------------CAGAAGTTTGGCAGCAT--CAGCGCATTTAAGGCGCAACATCAGCAGCAGCAACAACATCCGCATGCTACCCTGCAG	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
....................................................................................................CGCAAGATCAGCCGCAGC..........................	18	1	20.00	0.00	5.00	15.00	0.00
...............................................................................................................................................C	19	3	0.33	0.00	0.00	0.00	0.33
......................................................................................................CAACATCAGCAGCAGGGAC.......................	19	10	0.10	0.00	0.00	0.00	0.10
...................................................................................................................AACAACAAAATCCGCATG...........	18	1	1.00	0.00	0.00	1.00	0.00
.........................................................................................................................TACATCCGCACGCTACCCT....	19	1	1.00	1.00	0.00	0.00	0.00

chr3R:5368686-5368768 -

28.36

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCC-----------GTACAATACCCAAG T----------------------------------------------------------------GGACAAGACCGAGCAGCATCCCCAGCAGCAGCAGCAAGTGAGTCTGCAGAAGCAGCAGAAGCCCGCCGATACAACTGGCAAC	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
..................................................................CACAAGATCGAGCAGCATC..............................................................	19	1	1.00	0.00	0.00	1.00	0.00

chr3L:4782636-4782677 -

18.66

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG
----------------------------------------------------------------------------------------------AGCAGCACAAGCAGCAACACCGAAGGAAGCAACATCCGCAGG

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

chrX:8220737-8220779 +

17.91

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTA-CAATACCCAAG ----------------------------------------------------------------------------------------------AGCAGCAGCAGCAGCAGCAGGACCAGTCGCAGCAGCAGCCGCA	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
.................................................................................................AGCAGCAGCAGCAGCAGGG.....................	19	27	0.04	0.00	0.00	0.04	0.00
....................................................................................................AGCAGCAGCAGGAGGACT...................	18	11	0.09	0.00	0.00	0.00	0.09
..................................................................................................CAAGCAGCAGCAGCAGGAC....................	19	9	0.11	0.00	0.00	0.00	0.11
....................................................................................................AGCAGCAGCAACAGGGCC...................	18	38	0.03	0.00	0.03	0.00	0.00
.....................................................................................................ACAGCAGCAGCAGGACGA..................	18	12	0.08	0.00	0.08	0.00	0.00
..............................................................................................AGCCGGAGCAGCAGCAGCAGGAC....................	23	2	0.50	0.00	0.00	0.00	0.50
..........................................................................................................AGAAGCAGCACCAGTCGCAGC..........	21	6	0.17	0.00	0.00	0.17	0.00
.......................................................................................................AGCAGCAGCAGGAGCAGGCGC.............	21	30	0.03	0.03	0.00	0.00	0.00

chrX:7467814-7467829 +

9.7

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG
TTTTTTTTTATTTTTT------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

None

droSec1 - 6 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

super_1:944262-944397 -

97.8

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGCACGGCCGTACAATACCCAAG	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
.........................................................................TCTTGCACCGTTCCAAAAGAGA.........................................	22	1	13.00	3.00	9.00	1.00
.........................................................................TCTTGCACCGTTCCAAAAGAGAG........................................	23	1	9.00	2.00	5.00	2.00
.........................................................................TCTTGCACCGTTCCAAAAGAGAGC.......................................	24	1	7.00	1.00	6.00	0.00
..........................................................................CTTGCACCGTTCCAAAAGAGAGC.......................................	23	1	5.00	0.00	2.00	3.00
.........................................................................TCTTGCACCGTTCCAAAAGAG..........................................	21	1	4.00	1.00	0.00	3.00
.........................................................................TCTTGCACCGTTCCAAAAGAGT.........................................	22	1	2.00	1.00	1.00	0.00
.........................................................TACGCTGTGGCAGAGGTC.............................................................	18	1	1.00	0.00	0.00	1.00
..................................................................................................GCCCGTGGAGCGATGAGC....................	18	1	1.00	0.00	1.00	0.00
.......................................................................................AAAAGTGAGCAGCAAGTGG..............................	19	1	1.00	0.00	1.00	0.00
....................................GGTTTCTTTCGCGAAGTG..................................................................................	18	1	1.00	0.00	0.00	1.00
.............................................TGCGACGTGCAATACTCTGTGGC....................................................................	23	1	1.00	1.00	0.00	0.00
...............................AACCTGGTTTTTTTTGCG.......................................................................................	18	1	1.00	0.00	1.00	0.00
.........................................................................TCTTGCACCGTTCCAAAAGA...........................................	20	1	1.00	0.00	0.00	1.00
.....................TCCGCTCGAGAACGTGGTT................................................................................................	19	1	1.00	1.00	0.00	0.00
..........................................................................CTTGCACCGTTCCAAAAGAGAGA.......................................	23	1	1.00	0.00	1.00	0.00
.......................................................................AGTCTTGCACCGTTCCAAAAGAGAGC.......................................	26	1	1.00	1.00	0.00	0.00
.........................................................................TCTTGCACCGTTCTAAAAGAG..........................................	21	1	1.00	0.00	0.00	1.00
......................................TTTCTTTTGCGACGTGCAATA.............................................................................	21	1	1.00	1.00	0.00	0.00
.......................................................................................AAAAGTGAGCAGCAAGTG...............................	18	1	1.00	0.00	0.00	1.00
..........................................................................CTTGCACCGTTCCAAAAGCGAGC.......................................	23	1	1.00	1.00	0.00	0.00
.........................................................................TCTTGCACCGTTCCAAAAG............................................	19	1	1.00	0.00	0.00	1.00

super_27:624785-624867 -

28.36

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGG-----------CCGTACAATACCCAAG T----------------------------------------------------------------GGACAAGACCGAGCAGCATCCCCAGCAGCAGCAGCAAGTGAGCCTGCAGAAGCAGCAGAAACCCGCCGATACAACTGGCAAC	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
......................................................................................................GTGAGCCTGCGGAAGCATC..........................	19	1	2.00	0.00	0.00	2.00
............................................................................AACAGCATCCCCAGCAGCAG...................................................	20	13	0.08	0.00	0.08	0.00
..................................................................................GACCCCAGCAGCAGCAGCA..............................................	19	28	0.04	0.00	0.04	0.00
............................................................................AGCAGTATCCGCAGCAGCAGC..................................................	21	28	0.04	0.00	0.04	0.00
........................................................................................AGCAGCAGCAGCAAGxGAGGCT.....................................	21	2	0.50	0.00	0.00	0.50
..............................................................................CAGCGTCCGCAGCAGCAGCAG................................................	21	31	0.03	0.00	0.03	0.00
...........................................................................................AGCAGCAGCAAGGGAGCCC.....................................	19	1	1.00	0.00	0.00	1.00
........................................................................ACCGAGCAGCATCCCCAGCAGCAGCA.................................................	26	1	1.00	1.00	0.00	0.00
......................................................................................CCAGCAGCAGCAGCAAGTGAGCCTGC...................................	26	1	1.00	0.00	1.00	0.00
.............................................................................................................TGCAGAAGCAGCAGAAACCCGCCGAT............	26	1	1.00	0.00	1.00	0.00
.............................................................................................................AGCAGAAxCAGCAGAAACC...................	18	1	1.00	0.00	1.00	0.00
..................................................................................ATCCCCAGCAGCACCAGCAAGT...........................................	22	1	1.00	0.00	1.00	0.00
..................................................................GACAAGAGCGxGCAGCATCC.............................................................	19	1	1.00	0.00	0.00	1.00
..............................................................................CAGCCTCCGCAGCAGCAGCAGCA..............................................	23	13	0.08	0.00	0.08	0.00
.....................................................................................CCCAGCAACAGCAGCAGG............................................	18	39	0.03	0.00	0.03	0.00

super_1:2984590-2984653 +

26.82

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGA---GAACGGCCGTACAATACCCAA---G ------------------------------------------------------------------GCTGAAGTCCT----CGGTGCAGGAGAA-ACGGCTGG----GCGAGCCCTTCAACGGC---AACACGCCCAATGTG	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
...................................................................CTGAAGTCCT----CGGTGCAGGA...................................................	20	1	1.00	0.00	1.00	0.00
.....................................................................................GCAGGAGAA-ACGGCTGG----GCGAGCCCTT.........................	27	1	1.00	0.00	1.00	0.00

super_0:4507410-4507474 +

25.75

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAA-CGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG TCGGTGGCAGCTTG--TACTCGCTGCAGCAGAATCATGGCGGCGC---------GCG------------------------------------------------------------ATTCCTGGACAAT-CCCAAT	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
........................GCAGCAGAATCATGGCGGCGC---------GCG------------------------------------------------------------A...................	25	1	1.00	0.00	1.00	0.00

super_15:1292594-1292652 +

23.13

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTA-CAATACCCAAG ------------------------------------------------------------------------------CACCATCACAGTCACCAGCAGCAGCAGCAGCAGCAGGACCAGTCGCAGCAGCAGCCGCA	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
.......................................................................................................AGCAGCAGCAGGACCGGGC...............	19	2	1.00	0.00	1.00	0.00
..............................................................................................AGCAGCAGCAGCAGGAGGAGGAC....................	23	9	0.11	0.00	0.11	0.00
.................................................................................................................GTACCAGGCGCAGCAGCA......	18	6	0.17	0.00	0.17	0.00
............................................................................................CCAGCAGCAGAAGCAGCA...........................	18	35	0.03	0.00	0.03	0.00
..................................................................................................GCAGCAGCTGGAGCAGGA.....................	18	34	0.03	0.00	0.03	0.00
......................................................................................CAGCCACCAACAGCAGCAGCA..............................	21	5	0.20	0.00	0.20	0.00
.................................................................................................AGCAGCAGCAGCAGGAGGA.....................	19	29	0.03	0.03	0.00	0.00
........................................................................................................GCAGCAGCAGGAACAGGC...............	18	25	0.04	0.00	0.04	0.00
...................................................................................TCCCAGTCATCAGCAGCAGC..................................	20	1	1.00	0.00	1.00	0.00
.......................................................................................ATTCACCAGCAGCAGCAGCAAC............................	22	16	0.06	0.06	0.00	0.00
.......................................................................................................TGCAGCAGCAGCACCAGTCGCA............	22	6	0.17	0.00	0.17	0.00
..........................................................................................CACCAGCAGCTGAAGCAGC............................	19	27	0.04	0.00	0.04	0.00
.........................................................................................TCACCAGCAGCAGAAGCACCAGCAG.......................	25	6	0.17	0.00	0.17	0.00
...................................................................................................CGGCAGCGGCAGCAGGAC....................	18	10	0.10	0.10	0.00	0.00
............................................................................................CCACCAGCAGCAGAAGCAGCAG.......................	22	27	0.04	0.04	0.00	0.00
.........................................................................................TCCCCAGCAGCAGCAGCATCA...........................	21	24	0.04	0.00	0.04	0.00
..................................................................................ATCCCAGTCATCAGCAGCAGCA.................................	22	1	1.00	0.00	1.00	0.00
........................................................................................GACCCCAGCAGCAGCAGCA..............................	19	28	0.04	0.00	0.04	0.00
.................................................................................................AGCAGCAGCAGGAGCAGG......................	18	30	0.03	0.00	0.03	0.00
............................................................................................CAAGGAGCAGCAGCAGCAGC.........................	20	41	0.02	0.02	0.00	0.00
...............................................................................................................CAGCACCAGTGGCAGCAGCAG.....	21	34	0.03	0.00	0.00	0.03
.....................................................................................CCAGTCATCAGCAGCAGCA.................................	19	4	0.25	0.00	0.00	0.25
............................................................................................CCAGCAGCAGCAGAAGCAGGAG.......................	22	21	0.05	0.00	0.05	0.00
.........................................................................................TAACGAGCAGCAGCAGCA..............................	18	17	0.06	0.00	0.06	0.00
........................................................................................................GCAGAAGCAGCACCAGTCGC.............	20	8	0.13	0.00	0.13	0.00
........................................................................................GTCACAAGGAGCAGCAGCAGC............................	21	1	1.00	1.00	0.00	0.00
..............................................................................................AGCAGCAGCAGCAGCAGGAGGT.....................	22	30	0.03	0.00	0.03	0.00
.......................................................................................AATTACCAGCAGCAGCAGC...............................	19	11	0.09	0.00	0.09	0.00
..................................................................................................GCAGCAGCAGCAGCAGGATCAGG................	23	21	0.05	0.00	0.05	0.00
.....................................................................................................GCAGCAGCAGCAGGACCGGGC...............	21	2	0.50	0.00	0.00	0.50
..................................................................................................GCAGCAGCATCAGCAGGGC....................	19	17	0.06	0.00	0.06	0.00
...................................................................................................................AACAGTCGCAGCAGCAGCCGCC	22	3	0.33	0.00	0.33	0.00
..............................................................................................AGCAGCAGCAGCAGCAACAGGAC....................	23	4	0.25	0.00	0.25	0.00
.................................................................................................AGCAGCAGCAGCAGGAGG......................	18	34	0.03	0.00	0.03	0.00
..................................................................................ATCACAGCCATCAGCAGC.....................................	18	1	1.00	0.00	1.00	0.00
.............................................................................................CAGCAGCAGCATCAGAAGCAGG......................	22	23	0.04	0.00	0.04	0.00
.................................................................................................AGCAGCAGCAGAAGCAGGA.....................	19	20	0.05	0.00	0.05	0.00
..........................................................................................CACCAGCGGCAGTAGCAGCAGC.........................	22	34	0.03	0.00	0.03	0.00
.........................................................................................CCACCAGCAGCAGAAGCAGCAG..........................	22	27	0.04	0.04	0.00	0.00
............................................................................................CCAGCGGCAGCAGCAGCAG..........................	19	31	0.03	0.00	0.03	0.00
....................................................................................................AGCAGCAGCAGCAGGACAA..................	19	49	0.02	0.00	0.00	0.02

super_15:1217227-1217276 -

20.9

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCG-TACAATACCCAAG ---------------------------------------------------------------------------------------AAGAAGAAGCAGAAGCAGAAGCAACAACAACAGCAGCAGCAGAGGCAGAG	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
...............................................................................................................CAACAACAGCAGCAGCAGAAGC....	22	42	0.07	0.00	0.07	0.00
...............................................................................................................CAACAACAGCAGCAGCAGAAG.....	21	45	0.07	0.00	0.07	0.00
.............................................................................................................AACAAAAACAGCAGCAGT..........	18	45	0.07	0.00	0.07	0.00
...........................................................................................AGAAGCAGAATCAGAAACA...........................	19	1	2.00	2.00	0.00	0.00
...............................................................................................................CAACAACAGCAGCAGCAG........	18	79	0.03	0.00	0.03	0.00
.........................................................................................TAAGAAGCTGAAGCAGAA..............................	18	1	2.00	0.00	2.00	0.00
.....................................................................................................GCAGAAGCAGCAACAACAGCAGC.............	23	39	0.05	0.00	0.05	0.00
.................................................................................................................ACAACAGCAGCAGCAGAAGCA...	21	43	0.05	0.00	0.02	0.02
.................................................................................................................ACAACAGCAGCAGCAGAAG.....	19	46	0.04	0.00	0.04	0.00
...........................................................................................AGAAGCAGGAGAAGAAGC............................	18	2	0.50	0.00	0.00	0.50
................................................................................................................AACAACAGCAGCAGCAGAAGCA...	22	42	0.02	0.00	0.02	0.00
............................................................................................................CAACAACAACGGCAGCAGCAGT.......	22	26	0.04	0.00	0.04	0.00
..............................................................................................................ACAACAACTGTAGCAGCA.........	18	39	0.03	0.00	0.03	0.00
........................................................................................AGAAGAAGGAGAAGAAGAA..............................	19	1	1.00	1.00	0.00	0.00
.....................................................................................................GCAGAAACAACAACAAGA..................	18	23	0.04	0.00	0.04	0.00
.......................................................................................................AGATGCAACAACAACAGT................	18	8	0.13	0.00	0.13	0.00
........................................................................................AGCAGAAGTAGAAGCAGA...............................	18	2	0.50	0.00	0.50	0.00
.......................................................................................................AGAAGCAGCAACAACAGCAGCAGC..........	24	49	0.02	0.00	0.02	0.00
...............................................................................................................CAACAACAGCAGCAGCAGAAGCAG..	24	25	0.04	0.00	0.04	0.00
......................................................................................................................AGCAGAAGCAGAAGCAGA.	18	16	0.06	0.00	0.06	0.00
................................................................................................................AACAACAGCAGCAGCAGCGGC....	21	53	0.02	0.02	0.00	0.00
.............................................................................................................AACAACAACCGCAGCAGCAGG.......	21	24	0.04	0.00	0.04	0.00
......................................................................................................................AGCAGGAGCAGATGCAGA.	18	1	1.00	0.00	1.00	0.00
................................................................................................................AACAACAGCAGCAGCAGAAGCAG..	23	25	0.04	0.00	0.04	0.00
......................................................................................................CAAATGCAACAACAACAGCAGCA............	23	7	0.14	0.00	0.14	0.00
............................................................................................................CAACAACAACAGCGCCAGC..........	19	51	0.02	0.02	0.00	0.00
............................................................................................................AAACAACAACAGCAGCAGCGG........	21	25	0.04	0.00	0.00	0.04
.............................................................................................................AACAACAACGGCAGCAGC..........	18	35	0.03	0.00	0.03	0.00
.............................................................................................................AACAACAACCGGAGCAGC..........	18	37	0.03	0.00	0.03	0.00
................................................................................................................AACAATAGCAGCAGCAGTG......	19	8	0.13	0.00	0.13	0.00
....................................................................................................AGCAGAAGCAGCAACAACAGCAG..............	23	39	0.03	0.00	0.03	0.00
.....................................................................................................GCAGAAGCAGCAACAACAGCA...............	21	49	0.02	0.00	0.02	0.00
.............................................................................................................AACAACAACAGCAGCGGC..........	18	43	0.02	0.00	0.02	0.00
.........................................................................................GAAGAAGGAGAAGAAGAA..............................	18	1	1.00	0.00	1.00	0.00
...................................................................................................................AACAGCAGCAGCGGAGAC....	18	2	0.50	0.00	0.50	0.00
....................................................................................................AGCAGAAGCAGCAACAACAGC................	21	49	0.02	0.00	0.00	0.02
..........................................................................................................AGCAACTACGACAGCAGCAGC..........	21	24	0.04	0.04	0.00	0.00
...........................................................................................AGAAGCTGAAGCAGGAGCA...........................	19	2	0.50	0.00	0.50	0.00
.............................................................................................................AACAACAACAGCAGCAGCGGG.......	21	28	0.04	0.04	0.00	0.00
................................................................................................................AACAGCAGCAGAAGCAGAGGC....	21	5	0.20	0.00	0.20	0.00
...................................................................................................................AACAGCAGCAGCGGAGACA...	19	1	1.00	0.00	1.00	0.00
..............................................................................................AGCAGAAGCAGAAGCAGA.........................	18	16	0.06	0.00	0.06	0.00
........................................................................................AGCAGAAGCAGAAGCAGA...............................	18	16	0.06	0.00	0.06	0.00
.................................................................................................................ACAACAACAGCAGCAGAGT.....	19	9	0.11	0.00	0.11	0.00
.............................................................................................................AACAACAACAGTAGCAGC..........	18	37	0.03	0.00	0.00	0.03
..................................................................................................................CAGCAGCAGAAGCAGAGGCAG..	21	21	0.05	0.00	0.05	0.00

droYak2 - 7 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

chr2L:15977521-15977656 -

95.63

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG TTTTCGTTTACTTGTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCATCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGCACGGCCGTAAAATACCCAAG	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
..........................................................................CTTGCATCGTTCCAAAAGAGAGC.......................................	23	1	3.00	0.00	0.00	0.00	0.00	3.00
..........................................................................CTTGCATCGTTCCAAAAGAGAGCT......................................	24	1	3.00	0.00	0.00	0.00	0.00	3.00
.........................................................................TCTTGCATCGTTCCAAAAGAG..........................................	21	1	2.00	0.00	0.00	0.00	0.00	2.00
.........................................................................TCTTGCATCGTTCCAAAAGAGAGC.......................................	24	1	2.00	0.00	0.00	0.00	0.00	2.00
...............................................................................ATCGTTCCAAAAGAGAGCAGC....................................	21	1	2.00	0.00	0.00	2.00	0.00	0.00
..............................................................................................AGCAGCACGTGGAGxGACGATC....................	21	1	1.00	0.00	0.00	1.00	0.00	0.00

chr2R:7055807-7055959 -

46.01

TTTTCGTTTACTTTTTAAC---CCT----CCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAG---TC----TTGCACCGTTCCAAAAGAGAG--------CAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG TTTTCATTTTCTTTTTGCAGGACTTGCCACAGGATGTGGACTTGGTTT-TCTTGTGGC-TGCTTTCACCTGCCGCAGCAGCGATATTCCTAACACCTCTCCGCGTTGAATAGGCATTTCCGGTCGTGCAGCG-CGGAAACAGCAG--CAGCAATCAGC	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.................................................................................................................................GCG-CGGAAACGGCAG--CAGT.......	19	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................................................................................ATTTCCGGTCGTGCAGCG-CGGAAACAGC...............	28	1	1.00	0.00	0.00	1.00	0.00	0.00
................................................................TCACCTGCCGAAGCAACG............................................................................	18	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................................CTCACCTGCCGAAGCAGC.............................................................................	18	2	0.50	0.00	0.50	0.00	0.00	0.00
..........................AAACAGGATGTGGACTTGG.................................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
................................................................TCACCTGCCGAAGCAAC.............................................................................	17	1	1.00	0.00	0.00	0.00	1.00	0.00
............................ACAGGATGTGGACTTGGGCT-.............................................................................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
..........................................................................................AACACCTCTCCGCGTTGAATAGG.............................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00

chr3L:14089262-14089336 +

31.34

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCG----TTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCC--AAG -------------------------------------------------------------------CAGAAGTTTGGTAGCATCAGCGCCTTTAAGGCGCAACATCAGCAGCAACAACAACATCCGCATGCTACCCTGCAG	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.......................................................................................................CAACAGCAGCCACAACAACAT..................	21	22	0.05	0.00	0.00	0.05	0.00	0.00
......................................................................AAGTTTGGTAGCATCAGCGC....................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
.....................................................................GAAGTTTGGTAGCATCAGCGC....................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
............................................................................................................GCAGCCACAACAACATCAGCA.............	21	68	0.01	0.00	0.00	0.00	0.01	0.00
..........................................................................................................CAGCAGCAACAACAATGT..................	18	21	0.05	0.00	0.00	0.00	0.05	0.00
.......................................................................................................CAACAGCAGCCACAACAACATC.................	22	19	0.05	0.00	0.00	0.05	0.00	0.00

chr3L:2231004-2231059 -

26.12

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCG---ACGAGAACGGCCG--TACAATACCCAAG- --------------------------------------------------------------------------------------CAAAAGGAGCCAGCACCTGGAGCGGGAACAAGGACGGCCAGCTACGAGGAGCAGCA	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.......................................................................................................................ACGGCCAGCTTTGAGGAG.....	18	8	0.88	0.00	0.50	0.00	0.38	0.00
.......................................................................................................................ACGGCCAGCTTTGAGGAGC....	19	8	0.25	0.00	0.00	0.00	0.25	0.00
.......................................................................................................................ACAGCCAGCTTCGAGGAG.....	18	8	0.25	0.00	0.13	0.00	0.13	0.00
......................................................................................................GTGGAGCGGGxACAAGGAC.....................	18	1	1.00	0.00	0.00	1.00	0.00	0.00

chr2L:13875680-13875740 +

25.37

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAG-CAGCACGTGGAGCGACGAG-----AACGGCCGTAC-AATACCCAAG ----------------------------------------------------------------------------------GCTTCAACAGGGAGTCAAGGAGCGCAAAGCCAAGGATCCCACGGCCGCGCCAAAACAGAAG	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.................................................................................................CAAGGAGCGCAAAGCCAAGG..........................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
........................................................................................ACAGGGAGTCAAGGAGCG.....................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................................................GCCAGGGAGTCAAGGAGCGC....................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00

chrX:19071084-19071130 -

19.73

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG ----------------------------------------------------------------------------------------AAGAAGAGCGGCAAGTCGATCAAGGACCTGTGTCGCAATGAGCCCAA-	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.................................................................................................GCCAAGTCGATCAAGGCC.....................	18	1	2.00	0.00	0.00	0.00	0.00	2.00
................................................................................................CAGCAAGGCGATCAAGGA......................	18	1	1.00	0.00	0.00	1.00	0.00	0.00

chrX:4298928-4298953 +

11.78

Size

Hit Count

Total Norm

V046
Embryo

V052
Head

V120
Male body

V058
Head

M026
Head

None

droEre2 - 3 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_4929:19300554-19300689 +

96.36

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTTTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAACAGCACGTGGAGCGACGAGCACGGCCGTACAATACCCAAG	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.........................................................................TCTTGCACCGTTCCAAAAGAG..........................................	21	1	5.00	0.00	0.00	0.00	5.00
.........................................................................TCTTGCACCGTTCCAAAAGAGAA........................................	23	1	3.00	1.00	0.00	0.00	2.00
.........................................................................TCTTGCACCGTTCCAAAAGAGA.........................................	22	1	2.00	0.00	0.00	0.00	2.00
.....................................................GCAATACTTTGTGGCAGA.................................................................	18	1	1.00	0.00	0.00	0.00	1.00
......................................TTTCTTTTGCGACGTGCAATAC............................................................................	22	1	1.00	0.00	0.00	0.00	1.00
.........................................................................TCTTGCACCGTTCCAAAATAGT.........................................	22	1	1.00	0.00	0.00	0.00	1.00
.........................................................................TCTTGCACCGTTCCAAAAGA...........................................	20	1	1.00	0.00	0.00	0.00	1.00
.........................................................................TCTTGCAACGTTCCAAAAGAGA.........................................	22	1	1.00	0.00	0.00	0.00	1.00
.........................................................................TCTTGCACCGTTCAAAAAGAGAA........................................	23	1	1.00	0.00	0.00	0.00	1.00
....................................GGTTTCTTTTTCGACTTGCAATACT...........................................................................	25	1	1.00	1.00	0.00	0.00	0.00
...........................................................................TTGCACCGTTCCAAAAGAGAACA......................................	23	1	1.00	0.00	0.00	0.00	1.00
.........................................................................................AAGAxAACAGCTCGTGGAG............................	18	1	1.00	0.00	0.00	0.00	1.00
...........................................................................TTGCACCGCTGCAAAAGAGAACAG.....................................	24	1	1.00	1.00	0.00	0.00	0.00
.......................................................................................................TAGAGCGACGAGAACGGC...............	18	1	1.00	0.00	0.00	0.00	1.00

scaffold_4770:1972162-1972263 -

37.03

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG -------------------------CTCAAGAAGCGCACATCATTCACACCGTCGCAGACAC--TGGCGGCCATCGAGCGGCAGCGCCAGAGGAAGCAGCAATCGCAGCAGCAGCAGCAGCAGCG-------CCAG	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
....................................................................................................AATCGCAGxTGCAGCAGCAGC...............	20	18	0.28	0.00	0.00	0.00	0.28
................................................................................................AAGCAATCGCAGCAGCAGC.....................	19	25	0.16	0.04	0.00	0.00	0.12
..........................................................................................................AGCAGCAGCAGCAGCAGCG-------....	19	45	0.02	0.00	0.00	0.00	0.02
................................................................................................CAGCAAGCGCAGCACCAGCA....................	20	26	0.04	0.00	0.00	0.00	0.04
..............................................................................................AGCAGCAGTCGCAGCAGCAGCAG...................	23	32	0.03	0.00	0.00	0.00	0.03
......................................................................................................TCGCAGCAGCAGAAGGAGCAG.............	21	16	0.06	0.00	0.00	0.00	0.06
................................................................................................AAGCAATCGCAGCAGCAGCAAC..................	22	4	0.25	0.00	0.00	0.00	0.25
.................................................................................................AGCAAACGCAGCAGCAGCGGC..................	21	11	0.09	0.00	0.00	0.00	0.09
...............................................................................................ACAACAATCGCAGCAGCAGCA....................	21	26	0.04	0.00	0.00	0.00	0.04
..................................................................................................GCATTCGCATCAGCAGCAGCA.................	21	32	0.03	0.00	0.03	0.00	0.00
................................................................................................AAGCAATCGCAGCAGCAG......................	18	26	0.04	0.00	0.00	0.00	0.04
.............................................................................GCAGCAGCGCCAGACGAA.........................................	18	1	1.00	0.00	0.00	0.00	1.00
.......................................................................CATCCAGCGGCAGCTCCAG..............................................	19	1	1.00	1.00	0.00	0.00	0.00

scaffold_4784:4619733-4619776 +

16.42

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG T------------------------------------------------------------------------------------TCAACGACCAGCAGCAAGTGGTCTACCAA--ACGGCGG------CTCCAGC	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
T------------------------------------------------------------------------------------TCAACGACCAGCAGCAAGTGGT.............................	23	1	1.00	1.00	0.00	0.00	0.00

droFic1 - 14 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000453948:50042-50182 -

84.25

TTTTCGTTTACTTT-TTA-ACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACT-CTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAG-AGCAGCACGTGGAGCGACGAGAACGGCCGTAC-AATACCCAAG
TTTTCGTTTACTTTCTTAAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATTCTTTTGTGGCAAAAGTCTTGCATCGTTCCAAAAGACTAACAGCACGTGGAGCGACAAGTACGGCCGTAAAAATACCCAAA

Size

Hit Count

Total Norm

scf7180000453778:38718-38843 +

44.01

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG--------
TGAACTCTCACCTTCTGCTCTTCTCCTCCCT-------------TGCAGACCTGCTACGAACTGGAGCGCTACCTGCGGGA-----CGAGCCCAAGTTGCAGAAGAAGCGACACAGCAATTTGGACAACGCCTGGGACATATTC

Size

Hit Count

Total Norm

scf7180000454073:678517-678647 +

42.99

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTT-------CCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG
TCTGTATTTTTTTTTTTGCTTTTTTTTGCTGAGCCCTTTTCCCTTCGTCCCGGGCGGCATGTCATGTCAGCGTTGTC--ATTGTTGTCAGTGTCATCACAGCACAGCAGCTGAAGCGCTG-------GTTGGCAACACCC---

Size

Hit Count

Total Norm

scf7180000453215:325740-325834 +

36.16

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGA-----------------AGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG
GCCTCATG-------------------------------------TCCCACCTGCAGTACTTCGTGCAGCAGCGCGAGTTGTCGGCCAAGAGCTGCGCCAGTCCAACTGGCTGGACCGCA---------------------GCCCCGCCCAGT

Size

Hit Count

Total Norm

scf7180000453438:41387-41465 -

31.34

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCA---CCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGT----ACAATACCCAAG
T----------------------------------------------------------------GGGAGAACTCCTCAAGCAACAGCAGCAGCAACAGCAGCAAACACAGCAACGACAACAACAATTGCAACAGCAACCACA

Size

Hit Count

Total Norm

scf7180000453850:256038-256107 -

23.13

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG
------------------------------------------------------------------GAAGAAAGCGAAAAACGCCCGCAAAATGCTAAAAATCTAAAACAAAAGTAACAAGCAACCAAAAGCGAAT

Size

Hit Count

Total Norm

scf7180000454050:456825-456871 -

21.19

Size

Hit Count

Total Norm

scf7180000454115:693178-693232 -

20.9

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCA-------AG
----------------------------------------------------------------------------------------AAACGCAACAGCAGCAGCAGCAACATCAACAGCAGCAGGATCACAATGAGAACAG

Size

Hit Count

Total Norm

scf7180000453784:338806-338850 -

20.9

Size

Hit Count

Total Norm

scf7180000454059:584837-584882 +

20.15

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGT----ACAATACCCAAG
----------------------------------------------------------------------------------------------AGCAGCAAACACAGCAACGACAACAGCAATTGCAACAGCAACCACA

Size

Hit Count

Total Norm

scf7180000453826:651467-651512 +

18.99

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCAC---GTGGAGC--GACGAGAACGGCCGTACAATACCCAAG
----------------------------------------------------------------------------------------------AGCAGCAGTGGAAGTAGTCGCATAAAGTCGGCCA-ACAATGCACCAG

Size

Hit Count

Total Norm

scf7180000453903:229917-229957 -

17.48

Size

Hit Count

Total Norm

scf7180000454104:1018894-1018932 -

16.63

Size

Hit Count

Total Norm

scf7180000454050:777375-777379 +

2.24

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG
CCAGC-----------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

None

droEug1 - 4 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000409672:5307008-5307144 -

92.1

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAG-CACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG
TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTTTGTGGCAAAAGTCTTGCATCGTTCCAAAAGAGAGCAACCACTTGGAGCGACGAGCACGGCCGTACAATACCCAAA

Size

Hit Count

Total Norm

scf7180000409554:92064-92129 +

24.99

TTTTC-GTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCA-AAAGAGAGCAG-CACGTGGAGCGACGAG--AACGGCCGTACAAT--ACCCAAG
TCTTCCACCT----------------------------------------------------------------------------GCAGGAGGAGGACGAAGACGA-GGAAGACGAGGAAGTGGCCACGCAGCTGGCGCACA

Size

Hit Count

Total Norm

scf7180000409466:3033190-3033238 -

20.9

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTA----CAATA--CCCAAG
---------------------------------------------------------------------------------------------GAGCAACACCAGTAGCAACAGCAACACCCAAAGGAGCAACATCCGCAAG

Size

Hit Count

Total Norm

scf7180000409797:833907-833928 +

8.51

Size

Hit Count

Total Norm

None

droBia1 - 8 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000302292:2853030-2853170 +

87.62

TTTTCGTTTACTTTTTA---ACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGAC--GTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG
TTTTGGTTTAATTTTTGAACACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGCGTGCAATACTTTGTGGCAGAAGTCTTGCATCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGCACGGCCGTACAATACCCAAG

Size

Hit Count

Total Norm

scf7180000302408:3053855-3053923 +

29.32

TTTTC-GTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCA----AAAGA-GAGCAGCACGTGGAGCGACGAGAAC--GGCCGTACAAT--ACCCAAG
TCTTCCACCTG----------------------------------------------------------------------------CAGGAGGAGGAGGACGAGGACGA-GGACGACGAGGAGGTGGCCACGCAGCTGGCGCACA

Size

Hit Count

Total Norm

scf7180000302402:3509388-3509439 -

22.9

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG
T---------------------------------------------------------------------------TGCAGCAGTCCAACAGA-ATCAGCAAATTCAACAACAACAGCAGCAGTAAA--------G

Size

Hit Count

Total Norm

scf7180000302126:3508147-3508201 +

21.26

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCA------AG
---------------------------------------------------------------------------------------GAGCAGGAGCGGAGCGGCCGGCGAGGAGCCCGACTATCCCGCCTCCTTCTACTAC

Size

Hit Count

Total Norm

scf7180000298389:878140-878179 +

16.35

Size

Hit Count

Total Norm

scf7180000299102:1709977-1710017 +

14.31

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG
--------------------------------------------------------------------------CCTGCACCGTT-------------GCAAGCTGTGCGGCAAGGTCGTC--------ACCCACA

Size

Hit Count

Total Norm

scf7180000302402:1903182-1903210 +

12.69

Size

Hit Count

Total Norm

scf7180000302187:1450583-1450610 -

11.19

Size

Hit Count

Total Norm

droTak1 - 8 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000412807:59993-60132 -

86.83

TTTTCGTTTACTTTTTA--ACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGAC--GTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG
TTTTCGTTTAATTTTCCACACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGCGTGCAATACTTTGTGGCAAAAGTCTTGCATCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGCACGGCCGTAAAATACCCAAA

Size

Hit Count

Total Norm

scf7180000415809:674976-675109 -

48.32

TTTTCGTTTACTT-----TTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGT--GGCAGAAGTCTTGCACC-----GTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACG---GCCGTACAATACCCAAG
TTTTCATCTCCTTAACAATTCAAACCCCTACT-AAAAGCGCTCTTTATTTC--A---------GCTCTGAGCAACAATGGTTATGCGCCCACGCCTCACGATAGTTACCAGCAACTTCAGCAGCAACAGCGATCCCTGTACAATCC-----

Size

Hit Count

Total Norm

scf7180000415391:157576-157723 -

38.89

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTC-TGTGGCAGAAGTCTTGCACCGTTCCAAAAG--AGAGCAGCACGTGGAGCGACGAGAACGGCCG----------TACAATACCCAAG
CAGCCCAACAATTGCAACAGCAGCACCAGCAGCCATCGCATTCGCCACAGCATGCGAGACTGCAGTCGCCACAACC-TGCTCCAGTACAACAGCAACAACAGCAGCAGCAGCAGCAACAACAGCAATTCTTGCAGCAACAGGCCACCGA

Size

Hit Count

Total Norm

scf7180000415242:294143-294300 -

36.85

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTG-----------CGACGTG------------CAATACT--------CTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGC----------GACGAGAACGGCCGTACAATACCCAAG
TTTGCTTTCTTCTTGTTCCCCGCCGCTTC---ACCTGGTTAGATATGAAACCACAGCTCGATATGAAACCATACAACTCATACTCATCGCAGCCGCAGCAGCAGTCGCATCC--------------GCAGTACTCGCAGCAGCAGCAGCAGCTGCTAATGGCTGACCAGCACTCA--

Size

Hit Count

Total Norm

scf7180000415281:199625-199680 +

22.55

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACC-GTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTA-CAATACCCAAG
CT--------------------------------------------------------------------------GGCAGCCG-TGCCGCAGGCAGCAGCAAC-----TAACAACAGCGGCAGCAGCAACA--TCAA

Size

Hit Count

Total Norm

scf7180000414717:26439-26485 +

21.64

Size

Hit Count

Total Norm

scf7180000415863:248366-248414 +

19.69

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAA-------AGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG
G---------------------------------------------------AGCAA-----------------------------CAAGTGTCTTTGGACAGCAACAGCAGCAGCCGCAACAACAGCC--------------

Size

Hit Count

Total Norm

scf7180000415281:199394-199449 +

19.34

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG
---------------------------------------------------------------------GAGGCGCTGCTGCTGACCAACCAACAGCAGCAACAGCGGCGACAACAGCAACAGCA-----------

Size

Hit Count

Total Norm

droEle1 - 7 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000491347:110639-110775 -

89.24

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTAC-AATACCCAAG
CTTTCGTTTACTTTTTGACCCTCCGCTCGGGAACGTGGTTTCTTTTGCGACGTGCAATACTTTGTGGCCAAAGTCTTGCAACGTTCCAAAGGAGAGCTGCACGTGGAGCGACGAGTACGGCCGTAAAAATACCCAAG

Size

Hit Count

Total Norm

scf7180000491280:2499490-2499625 +

46.25

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCA--------------------------------------------AG
TTTTCGATTTCTTCTTTTCCCATT------------------------GTAGTGCAATA--------------------ACTGCTTCAAGATGCTGATGCATCCGCAGCAGCGACTGAGCTTCTACAGTGACTACTCGCACGGTGTGACCTGTCCGTACTGCAACACACAGGACACGCAC

Size

Hit Count

Total Norm

scf7180000491047:338251-338376 -

41.55

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGC-ACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCA--AG
TT-------------CAACTGCCCGCACTGCCCGATGGCGTTTGCCGGGAGGAGCAAGCGTTCGCAGCACATTCTCAGCCATCATGTGGTGCAGCAGTACCAGTGCGGCCAGTGCACGCAAGTGTTCCCCGCCCAAAAG

Size

Hit Count

Total Norm

scf7180000491107:601425-601507 +

31.99

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGA-ACGGCCGTACAATACCCAA---G
-------------------------------------------------ATGTGCCAGCCACTGCGGCGGC--------ACCAGCACCAACAAGTGTTGCTGGTAGCGCCACCAGCAGCAGCAGTGTGTTTCTCAATGTG

Size

Hit Count

Total Norm

scf7180000491338:871319-871373 +

24.06

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG
------------------------------------------------------------------------------CACCGCCGCAACAGC-AGCAACAGTCGGAGCAGCA--ATCTGCAACACAGTTCCGCAG

Size

Hit Count

Total Norm

scf7180000491349:721182-721228 +

21.64

Size

Hit Count

Total Norm

scf7180000491008:1999293-1999333 +

14.31

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG
--------------------------------------------------------------------------CCTGCACCGTT-------------GCAAGCTGTGCGGCAAGGTCGTC--------ACCCACA

Size

Hit Count

Total Norm

droRho1 - 6 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000770698:29092-29228 -

91.38

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTAC-AATACCCAAG
TTTTCATTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTTTGTGGCAAAAGTTTTGCAACGTTCCAAAGGAGAGCAGCACGTGGAGCGACGAGTACGGCCGTAAAAATACCCAAG

Size

Hit Count

Total Norm

scf7180000770698:30844-30958 -

81.34

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG
TTTTCATTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTTTGTGGCAAAAGTTTTGCAACGTTCCAAAGGAGAGCAGCACGTGGAGCGACGAG---------------------

Size

Hit Count

Total Norm

scf7180000780080:511388-511432 +

18.66

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAAC---GGCCGTACAATACCCAAG
----------------------------------------------------------------------------------------------AGCAGCAGGTCCAGCAGCAGGAACTCCGTCGCTTCGATGGCATGG

Size

Hit Count

Total Norm

scf7180000777200:116577-116620 -

15.67

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG
C-----------------------------------------------------------------------------------ACCATGTGAAACGACCACTCCAAGCTGCAAGGAGGATAC---------CACG

Size

Hit Count

Total Norm

scf7180000780017:50636-50676 -

14.31

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG
--------------------------------------------------------------------------CCTGCACCGTT-------------GCAAGCTGTGCGGCAAGGTCGTC--------ACCCACA

Size

Hit Count

Total Norm

scf7180000768020:61572-61592 -

9.7

Size

Hit Count

Total Norm

None

droKik1 - 1 hit found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000302670:19296-19422 -

68.49

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTAC-AATACCCAAG
TTTTCGT-TAGTTT----CCCTCCGTTCGCGAGCGTGT-TTCCTTTG-GGCGTGCAACACTTTTTGCCAAAAGTCTTGCCACTGTCCAAAATCGCGAAGCACGTCGA---ACGAGTACGGCCGTAAAAATTCCCAAG

Size

Hit Count

Total Norm

droAna3 - 8 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_13266:3498798-3498932 -

65.94

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTT---TTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAG-AGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG ACC-CCTTTATTTTTATTTTCACCGTTCGAGAGGGTGTTCTCTTTGTTTTCGGCGTGCAAAACCCTTTG--AGAAGTTTTGCATCGTTCGAAATTAGGGGCAGCACCTCGAACAG--TACACGGCCGTAAAATTCCTAAA	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
..................................................................TTG--AGAAGTTTTTCATCGTTCGAA................................................	24	1	1.00	1.00	0.00	0.00	0.00

scaffold_13340:4279592-4279721 -

44.04

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCA-----AAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG TGTGCGTCTAGTCGGAAAAACACCCATCGAAACACTGAT-----ACGCGACATGC--TGCTCAGCGGCAACAGTTTCTCCTGGCCCTATCTGCCTTCGATGTGACACACGATGTGGCGCCAATTG----ACAACGACTTGA	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
................................................................................................................GTGGCGxCAATTG----ATAACG......	18	1	7.00	0.00	7.00	0.00	0.00
...............................................................................................................TGTGGCGxCAATGG----ACAACG......	19	1	3.00	0.00	3.00	0.00	0.00
................................................................................................................GTGGCGxCAATGG----ACAACG......	18	1	2.00	0.00	1.00	1.00	0.00
...............................................................................................................TGTGGCGxCAATTG----ATAACG......	19	1	2.00	0.00	2.00	0.00	0.00
..........................................................................................TGCCTTCGATGTGACACACGA..............................	21	1	1.00	0.00	0.00	1.00	0.00
...............AAATACTCCCATCGAAACA...........................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00
..............GAAAAACAGCCCTCGAAAC............................................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
...............................................................................................................TGTGGCGxCAATTG----ATAAC.......	18	1	1.00	0.00	1.00	0.00	0.00
.................................................................................................GATGTGACACACGATGTGGCGCC.....................	23	1	1.00	1.00	0.00	0.00	0.00
..............CAAAAACACCCATAGAAA.............................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
.........................................................TGCCCAGCGGxAACAGTTTC................................................................	19	1	1.00	0.00	1.00	0.00	0.00

scaffold_13117:4600487-4600532 +

22.39

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG TTTCATTACACTTTTTTGCCTTCCATTCGTGAATGTGTTTCTGTTT------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
....................................GTTTCTGTTT------------------------------------------------------------------------------------------	18	2	3.50	0.50	2.50	0.50	0.00
.........................................TGTTC------------------------------------------------------------------------------------------	20	6	0.33	0.00	0.33	0.00	0.00
.........................TTCGTGAATGTGCTTGTG.............................................................................................	18	1	1.00	0.00	0.00	1.00	0.00

scaffold_13248:4367978-4368035 -

22.34

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCC-GTACAATACCCAAG T---------------------------------------------------------------------------TGCACCA----CAAGTACAACCGGAACTGCAACAACAGCAGCAACCGGTACAACAACAGCA	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
..............................................................................................AACCAGAACAGCAACAACA........................	19	3	4.67	0.00	4.00	0.67	0.00
............................................................................................ACAACCAGAACAGCAACAAC.........................	20	2	5.50	0.00	5.50	0.00	0.00
............................................................................................ACAACCAGAACAGCAACAACA........................	21	2	5.50	0.00	5.00	0.50	0.00
.................................................................................CA----CAAGTGCAACCGGAACTGCA..............................	22	1	2.00	0.00	0.00	0.00	2.00
..............................................................................................AACCAGAACAGCAACAAC.........................	18	4	0.50	0.00	0.25	0.25	0.00
...............................................................................................ACCAGAACAGCAACAACA........................	18	5	0.40	0.00	0.40	0.00	0.00
...............................................................................ACCA----CAAGTACAACCGGAACTGC...............................	23	1	2.00	0.00	0.00	0.00	2.00
..........................................................................................................AACAACAGCAGCAGGCGGT............	19	6	0.17	0.17	0.00	0.00	0.00
............................................................................................ACAACCGGAACTGCAACAACAGC......................	23	1	1.00	0.00	0.00	0.00	1.00
..................................................................................A----CAAGTGCAACCGGAACTGC...............................	20	1	1.00	0.00	0.00	0.00	1.00
..............................................................................................AACCAGAACAGCAACAACAGCA.....................	22	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................................AACAACAGCAGCAACCCAT............	19	5	0.20	0.00	0.00	0.00	0.20
........................................................................................AAGTGCAACCGGAACTGCAGCAACA........................	25	1	1.00	1.00	0.00	0.00	0.00
.........................................................................................ACTACAACCGGAGCTGCAAC............................	20	1	1.00	1.00	0.00	0.00	0.00
..............................................................................................AACCGGAACAGCAACAACA........................	19	8	0.13	0.00	0.13	0.00	0.00
............................................................................................ACAACAGGAGCTGCAACA...........................	18	48	0.02	0.00	0.02	0.00	0.00
......................................................................................................GTACAACAACAGCAGCAAC................	19	27	0.04	0.00	0.00	0.00	0.04
...............................................................................AACA----CAAGTGCAACCGGAACTGCA..............................	24	1	1.00	1.00	0.00	0.00	0.00
..................................................................................A----CAAGTGCAACCGGAACTGCAGCAAC.........................	26	1	1.00	1.00	0.00	0.00	0.00
.............................................................................................CAACCAGAACAGCAACAACA........................	20	2	0.50	0.00	0.00	0.50	0.00
...............................................................................ACCA----CAAGTACAACCCGAACTGC...............................	23	1	1.00	0.00	0.00	0.00	1.00
..................................................................................A----CAAGTACAACCGGAACTCCAACA...........................	24	1	1.00	1.00	0.00	0.00	0.00
............................................................................................ACAACCGGAACTGCAACAACAGCAGC...................	26	1	1.00	0.00	0.00	0.00	1.00
.............................................................................................CAACCGGAACTGCAGCAACAAC......................	22	1	1.00	0.00	0.00	0.00	1.00

scaffold_13117:4508795-4508841 -

19.73

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG ----------------------------------------------------------------------------------------AAGAAGAGCGGCAAGTCCATCAAGGATCTGTGCCGCAACG-AGCCGAA	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
......................................................................................................................................AA	18	2	0.50	0.00	0.50	0.00	0.00

scaffold_13117:4522306-4522358 -

18.54

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG TTTTGA--------------------------------------------------------------------GTCGTGCCGCTGCAG----CGGCAGCAGCAGCAGCGGCGGCAGCAGCTGCA-----------	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
........................................................................................G----CGGTGGCAGCAGCAGCGGC........................	20	28	0.29	0.00	0.29	0.00	0.00
.....................................................................................................GCAGCAGCGTCGGCAGCAGCG..............	21	12	0.25	0.00	0.25	0.00	0.00
.....................................................................................GCAG----CGACAGCAGCAGCAGCGT.........................	22	13	0.15	0.00	0.15	0.00	0.00
.................................................................................................GGCAGCAGCAGCGTCGGC.....................	18	32	0.03	0.00	0.03	0.00	0.00
................................................................................................CAACAGCAGCAGCGGCGGCG....................	20	42	0.02	0.00	0.02	0.00	0.00
......................................................................................CAG----CAGCAGCAGCAGCAGxGGCGGCAG...................	26	31	0.03	0.00	0.03	0.00	0.00
.................................................................................................AGCAGCAGCAGCGGCGGCAGCA.................	22	41	0.02	0.00	0.00	0.02	0.00
.......................................................................................................AGCAGCGGCGGCAGCAGTGGC............	21	13	0.08	0.00	0.08	0.00	0.00
...................................................................................CTCCAG----CGGCAGCAACAGC..............................	19	30	0.03	0.00	0.03	0.00	0.00
.....................................................................................GCAG----CAGCAGCAGCAGCAGCGGCGGC.....................	26	31	0.03	0.00	0.03	0.00	0.00
..............................................................................................GGCAGCAGCAGCGTCGGC........................	18	32	0.03	0.00	0.03	0.00	0.00
.......................................................................................................AGCAGCGTCGGCAGCAGCG..............	19	13	0.08	0.00	0.08	0.00	0.00
.................................................................................................AACAGCAGCGGCGGCGGCAGCA.................	22	16	0.06	0.00	0.06	0.00	0.00
...................................................................................................CAGCAGCAGCGGCGGCAGC..................	19	63	0.02	0.00	0.02	0.00	0.00
..............................................................................................GGCAGCAGCTGCAGCGGCGGT.....................	21	8	0.13	0.13	0.00	0.00	0.00
......................................................................................................CAACAGCGGCGGCAGCAGT...............	19	23	0.04	0.00	0.04	0.00	0.00
......................................................................................CAG----CAGCAGCAGCAGCAGCGGCGGC.....................	25	37	0.03	0.00	0.03	0.00	0.00
.....................................................................................................GCATCAGCGGCGGCAGCAGCAGC............	23	39	0.03	0.00	0.03	0.00	0.00
..................................................................................................GCAGCAGCAGCGGTGGAAGC..................	20	13	0.08	0.08	0.00	0.00	0.00
....................................................................................................AGCAGTAGGGGCGGCAGC..................	18	8	0.13	0.00	0.13	0.00	0.00
........................................................................................G----CGGCAGCAGCAGCAGCGGCC.......................	21	11	0.09	0.00	0.09	0.00	0.00
.................................................................................................AGCAGCAGCGGCGGCGGC.....................	18	37	0.03	0.00	0.03	0.00	0.00
..................................................................................................GCAGCAGTAGGGGCGGCAG...................	19	6	0.17	0.00	0.17	0.00	0.00
.................................................................................................AGCAGTAGTAGCGGCGGC.....................	18	14	0.07	0.00	0.07	0.00	0.00
...............................................................................................GCAGCAGCAGCAGCGGCCGC.....................	20	38	0.03	0.00	0.03	0.00	0.00
.................................................................................................AACAGCAGCAGCGTCGGC.....................	18	30	0.03	0.00	0.00	0.03	0.00
................................................................................................CAGCAGCAGCAGCGGAGGA.....................	19	25	0.04	0.00	0.00	0.00	0.04
...............................................................................................GCAGCAGCAGCGGCGGCGGC.....................	20	34	0.03	0.00	0.03	0.00	0.00
....................................................................................................AACAGCAGCGGCGGAAGC..................	18	14	0.07	0.00	0.00	0.00	0.07
..................................................................................................GCAGCAGCAGTGGCGGAAGC..................	20	15	0.07	0.00	0.07	0.00	0.00
....................................................................................................AGCAGCAGCGGCGGCGGC..................	18	37	0.03	0.00	0.03	0.00	0.00
................................................................................................CAGAAGxAGCAGCGGCGGCA....................	19	5	0.20	0.00	0.20	0.00	0.00
.....................................................................................................GCAGCAGCGGCGGCGGCAGCTT.............	22	6	0.17	0.00	0.17	0.00	0.00
...................................................................................CTACAG----CGGCATCAGCAGCA.............................	20	10	0.10	0.00	0.10	0.00	0.00
..................................................................................................GCAGCAGCAGCGGCGGCGGC..................	20	34	0.03	0.00	0.03	0.00	0.00

scaffold_13117:4521460-4521501 -

16.42

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGT-ACAATACCCAAG -----------------------------------------------------------------------------------------------GTAGCAGCTGCAGCAGCGGCGGCAGCAGCAGCAGCAGCAGCG	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
..............................................................................................................GCGGTGGCAGCAGCAGCGGC.......	20	28	0.29	0.00	0.29	0.00	0.00
........................................................................................................GCAGCAGCGTCGGCAGCAGCG............	21	12	0.25	0.00	0.25	0.00	0.00
....................................................................................................................GCAGCGACAGCAGCAGCAGCG	22	13	0.15	0.00	0.15	0.00	0.00
.........................................................................................................CAACAGCGGCGGCAGCAGT.............	19	23	0.04	0.00	0.04	0.00	0.00
............................................................................................................CAGCGCCGTCAGCAGCAGCAGCAGC....	25	3	0.33	0.00	0.33	0.00	0.00
..........................................................................................................AGCAGCGGCGGCAGCAGTGGC..........	21	13	0.08	0.00	0.08	0.00	0.00
....................................................................................................AGCAGCAGCAGCGGCGGCAGCA...............	22	41	0.02	0.00	0.00	0.02	0.00
....................................................................................................................GCAGCAGCGGCAGCAGCAGCG	21	49	0.02	0.00	0.02	0.00	0.00
..................................................................................................................CGGCGGTAGCAGCAGCAGCAGC.	22	40	0.03	0.00	0.03	0.00	0.00
..............................................................................................................GCGGCGGCGGCAGCATCAGC.......	20	38	0.03	0.00	0.03	0.00	0.00
...............................................................................................................CGGCGGCAGCAGCGTCAGC.......	19	24	0.04	0.00	0.04	0.00	0.00
..........................................................................................................AGCAGCGTCGGCAGCAGCG............	19	13	0.08	0.00	0.08	0.00	0.00
...............................................................................................................CGGCGGTAGCAGCAGCAGCAGC....	22	40	0.03	0.00	0.03	0.00	0.00
..........................................................................................................AACAGAGGCGGCAGCAGCA............	19	15	0.07	0.00	0.07	0.00	0.00
......................................................................................................................AGCAGCAGCAGCAGCAGGG	19	53	0.02	0.00	0.02	0.00	0.00
..............................................................................................................ACGGCGGCAGCATCAGCAGCA......	21	17	0.06	0.00	0.06	0.00	0.00
....................................................................................................................GAAGCAGCAGCAGAAGCAGCG	21	32	0.03	0.00	0.03	0.00	0.00
....................................................................................................................GCAGCAGGAGCAGAAGCAGCG	21	28	0.04	0.04	0.00	0.00	0.00
.......................................................................................................................GAAGCAGCAGCAGCAGCA	20	47	0.02	0.00	0.00	0.02	0.00
........................................................................................................GCATCAGCGGCGGCAGCAGCAGC..........	23	39	0.03	0.00	0.03	0.00	0.00
......................................................................................................................AGCAGCAGCAGAAGCAGCG	19	33	0.03	0.00	0.03	0.00	0.00
.......................................................................................................TGCAGCAGCGGCAGCAGCAG..............	20	49	0.02	0.00	0.02	0.00	0.00
....................................................................................................................GCAGCAGAAGTAGCAGCAGCG	21	34	0.03	0.00	0.03	0.00	0.00
.....................................................................................................................CAGAAGCAGCAGCAGCAGCA	22	29	0.03	0.00	0.00	0.00	0.03
...........................................................................................................GCGGCGGCGGCAGCATCAGC..........	20	38	0.03	0.00	0.03	0.00	0.00

scaffold_12916:5629681-5629719 -

15.94

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG ----------------------------------------------------------------------------------------------AGCAGCAACAGCAGCAACAAGGGCACACCAGCAACATCC---	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
.....................................................................................................ACAGCAGCAACAGAGGCA.................	18	31	0.03	0.00	0.03	0.00	0.00
.................................................................................................AGCAAAAGCCGCAACAAG.....................	18	1	1.00	0.00	0.00	0.00	1.00
..................................................................................................GCAACAGCAGCAACAGGGT...................	19	10	0.10	0.00	0.00	0.00	0.10

droBip1 - 14 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000396427:1965389-1965535 -

52.18

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTT---TTGCGACGTGCAATACTCT------------GTGGCAGAAGTC-TTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTAC-AATACCCAAG
ACC-CCTTTATTTTTATTTTCACCGTTCGAGAGGGTGTTCTCTTAGTTTTCGGCGTGCAACACTTTTTTCGCGTCCGTGTGG-AAAAGTCGTTGCATCGTTCGA--ACTGGACAGCACCTCGAACAGCA--TACGGCCGCAAAAATTCCTAAA

Size

Hit Count

Total Norm

scf7180000396570:240594-240723 +

46.1

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAA-----AGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG
TGTGCGTCTAGTCGGAAAAACACCCATCGAAACGCTGAT-----ACGCGACATGC--TGCTCAGCGGCAACAGTTTCTCCTGGCCCTATCTGCCTTCGATGTGACACACGATGTGGCGCCAATTG----ACAACGACTTGA

Size

Hit Count

Total Norm

scf7180000396730:117706-117866 +

36.39

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAA-CG----------------------TGGTTTCTTTTGCGACGTGCAATACT-------CTGT---GGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCAC--GTGGAGCGACGAGAACGGCC----------------GTACAATACCCAAG
TA--CAACAACAATTGAACCTTCCGCCCAAACAACAACAACAACAACTTGTGCTCCTACAACTACAACTACAACATCAACTACAACCACATCTACTACAAC-------------------------AACCACCACGACTACAACCACCACAACAACAACTTGCGCCCCTACAACTACAACAACCACA

Size

Hit Count

Total Norm

scf7180000395714:85430-85508 +

30.54

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGT-GGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG
------------------------------------------------------CAATACATTGCCAGTGGGAGTGCAACAGCAACAGCAGCAACAACAACAACTGCAGCAACGT--GCCACCTTGCAACATCCA--

Size

Hit Count

Total Norm

scf7180000395954:75492-75564 -

27.6

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG
-------------------------------------------------------------CTGCAGCGGGACCGGTATCCGGATCCAGAACGGCCAGCTTCGAGGAGCAGCAACAGCAGCAGGACTATAACTA--

Size

Hit Count

Total Norm

scf7180000395814:14200-14262 -

20.9

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG
GAACAACTAACCCATCAGATATATATTCAACGATATAGATTCTATTGAAACCCTCACTAATCT-------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000395567:7647-7693 -

19.73

Size

Hit Count

Total Norm

scf7180000395553:8049-8087 -

18.19

Size

Hit Count

Total Norm

scf7180000395567:7631-7664 -

12.69

Size

Hit Count

Total Norm

scf7180000395567:7615-7634 -

7.46

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG-
---------------------------------------------------------------------------------------------------------------------CAGCTCCAAGATATCCAGCA

Size

Hit Count

Total Norm

None

scf7180000395839:162093-162109 -

5.97

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG
GCCTTGTTCTTCGCGAT-----------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

None

scf7180000395814:7137-7144 -

2.99

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG
TATCCGCA--------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

None

scf7180000395581:448-452 +

2.24

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG
CTAAC-----------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

None

scf7180000396529:224953-224953 -

0.75

Size

Hit Count

Total Norm

None

dp4 - 5 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

chr3:1570003-1570137 -

58.77

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTT--TTGCGACGTGCAATAC------------TCTGTGGCAGAAGTCTTGCACCGTTCCAAA-AGAGAGCAGCACGTGGAGCGACGAGAACGGCCG-TACAATACCCAAG TTTTTGGTTTTGTT------------TTGAGAACGTGCCTTCTTTTTTTTGGCGTGCAACACTTTTTTCGCGTCTCTGTGG-AAAAGTTTTGCATCGTTTCAAAAAAAAAGATACACGT----CGACACATACGGCCGCTAAGATTCCAAAA	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
.......TTTTGTT------------TTGAGGACTTGCCT................................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00

chrXR_group6:10331952-10332112 -

37.74

TTTTCGTTTACTTTTTAA--------CCCTCCGCTCGA---GAACGTGGTTT-----CTTTTGCGACGT-----GCAATACTCTGTGGCAGAAGTC---------------TTGCACCGTTCCAAAAG-AG---AGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG TCTTCATCCATTTTTCACTTACTGGTCCCCTCGGTTGGTTGCAACGTCTTTGCCTGGCCTTTGCCACGTTTTTCGTAATTTTTCATTGGAAATATCGCGCTACGCACTTGATTGCAGCATTTAATTAAAGCAGCAGCAACGGCAGCAGCAACGGCAACGGC---------------	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
..............................................................................................................................................CTGCAGCAACGGCAACGCC---------------	21	2	0.50	0.00	0.50	0.00	0.00
...........................................................................................................................................CGGCAxCAGCAACGGGAACG.................	19	2	0.50	0.00	0.00	0.50	0.00
.....................................................................................................................................CAGCAACGGCACCGGCAAC........................	19	13	0.08	0.00	0.00	0.08	0.00
.........................................................................CGTAATTTTTxGTTGGAAA....................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
.................................................................................................................................................CAGCAACGGCACCGGC---------------	19	13	0.08	0.00	0.00	0.08	0.00
............................................................................................................................................GGCAGCGGCAACGGGAACGGC---------------	21	3	0.33	0.00	0.33	0.00	0.00
.....................................................................................................................................CAGCATCGGCAGCAGCATCGG......................	21	16	0.06	0.06	0.00	0.00	0.00

chrXL_group1e:6568778-6568824 -

17.91

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGT-------ACAATACCCAAG
------------------------------------------------------------------------------------------------CAAAGCGTCGGGCGGCGAGGACGCCAAAGCCTGATCCAACACATACA

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

chrXR_group6:6562457-6562478 +

10.45

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG TTTTTATGCAAGTTTT------------------------CTTTTT------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
............TTTT------------------------TTTTTT------------------------------------------------------------------------------------------	18	43	0.02	0.00	0.02	0.00	0.00
.........................................TTTTT------------------------------------------------------------------------------------------	18	43	0.02	0.00	0.02	0.00	0.00

None

chr4_group3:10060532-10060553 -

9.7

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

None

droPer1 - 6 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

super_2:1744183-1744317 -

58.77

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTT--TTGCGACGTGCAATAC------------TCTGTGGCAGAAGTCTTGCACCGTTCCAAA-AGAGAGCAGCACGTGGAGCGACGAGAACGGCCG-TACAATACCCAAG TTTTTGGTTTTGTT------------TTGAGAACGTGCCTTCTTTTTTTTGGCGTGCAACACTTTTTTCGCGTCTCTGTGG-AAAAGTTTTGCATCGTTTCAAAAAAAAAGATACACGT----CGACACATACGGCCGCTAAGATTCCAAAA	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.....................................................................................AGTTTTGCATCGTTTCAAA................................................	19	1	1.00	0.00	0.00	0.00	0.00	1.00
................................................................TTTTCGCGTCTCTGTGG-A.....................................................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
............................................................ACTTTTTTCGCGTCTCTGTGG-AAA...................................................................	24	1	1.00	0.00	0.00	0.00	0.00	1.00
.........................................................................................TTGTATxGTTTCAAAAAAA............................................	18	1	1.00	0.00	1.00	0.00	0.00	0.00

super_13:80111-80217 +

37.58

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG TTGTCGTTTATTGTGTTTGCCTTTCC----GAATGTGTAATGTAATGCAATGCTCTTTAATCTCTTGCAGATGTCCGCTGGCGCGCAATTGCA----------------------GATGGCCCCACAGAACAC---	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.....GTTTATTGTGTTTGAATT.................................................................................................................	18	1	3.00	0.00	0.00	0.00	0.00	3.00
.....GTTTATTGTGTTTGCATGT................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00	0.00
...CTGTTTATTGTGTTTGCC...................................................................................................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00

super_60:67189-67269 +

28.45

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGA-CGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG T-----------------------------------GACTTCTATTGCGGCCGTGCCCTCAGCAGCGGCGA----CT------------AACAACAGCAGCACCACCAGCAGCAGCAACAA-----CAACAACAACA	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.........................................................................................................CCAGCAGCATCCACAA-----CAACAAC....	23	3	0.67	0.00	0.00	0.00	0.00	0.67
............................................................................................AACATCAGCACCACAAGCAGCAGC.....................	24	2	0.50	0.00	0.50	0.00	0.00	0.00
....................................................................................................................AACAA-----CAACAACAACA	19	47	0.02	0.00	0.02	0.00	0.00	0.00
................................................................................................................CACCAACAA-----CAACAACAACA	22	45	0.02	0.00	0.02	0.00	0.00	0.00
.......................................................................................................CACCAGCAGCAGCAACAA-----GT.........	20	33	0.03	0.00	0.03	0.00	0.00	0.00
..............................................................................................................ACCAGAAACAA-----CAACAACA...	19	34	0.03	0.00	0.03	0.00	0.00	0.00
...............................................................................................................GCAGCAACAA-----CAAGAACAAGA	21	11	0.09	0.00	0.09	0.00	0.00	0.00
...................................................................................................................CAACAA-----CAAGAACAACA	19	2	0.50	0.00	0.50	0.00	0.00	0.00
...........................................................................................CAACAGCAGCACCGTCAGC...........................	19	16	0.06	0.00	0.06	0.00	0.00	0.00
............................................................................................AACAGCAACACCACCAGCACC........................	21	7	0.14	0.00	0.14	0.00	0.00	0.00
.................................................................................................CATCACCACCAGCAGCAGA.....................	19	17	0.06	0.00	0.00	0.00	0.06	0.00
........................................................................................................ACCAGCAGCAGCAACAA-----GT.........	19	34	0.03	0.00	0.03	0.00	0.00	0.00
...............................................................................................AGCAGCGCCGCCAGCAGC........................	18	25	0.04	0.00	0.00	0.00	0.04	0.00

super_29:908371-908434 +

26.45

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGA-----ACGGCCGTACAATACCCAAG T---------------------------------------------------------------------------GGGACAGCCCCAACAGAAACAACGACAAGGAGCAGGAAAACCTCAACAGCAG--CAACGTCCAGG	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
....................................................................................................ACACGGAGCAGCAAAACC.......................	18	2	0.50	0.00	0.00	0.00	0.50	0.00
......................................................................................CAACAGAAACAACGACAAGGAGC................................	23	1	1.00	0.00	1.00	0.00	0.00	0.00

super_13:84987-85073 +

25.78

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGT-TCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG TATTCTCTCCC---TTAGAGCTTCATACGTGGATG--------------------------------------TTTGGC---GTATCGTAAA--GAGGATCGCATGGATGTGTTTGCA----TTGGCAAGACACGAG	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
......................................................................................................CATGTATGTGTTTGAA----TT.............	18	1	6.00	0.00	2.00	0.00	1.00	3.00
...........................................................................................A--GAGGATCGCATGGATGTGTT.......................	21	1	3.00	0.00	0.00	0.00	0.00	3.00
.........................................................................................AAA--GAGGATCGCATGGATGTG.........................	21	1	1.00	0.00	0.00	0.00	0.00	1.00
............................GTGGATG--------------------------------------TTCGGG---GTATC..................................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................................TGGATGTGTTTGCA----TTGGCAAG.......	22	1	1.00	1.00	0.00	0.00	0.00	0.00
.................GAGCTTCATACGxGGTTG--------------------------------------T...............................................................	18	1	1.00	0.00	1.00	0.00	0.00	0.00
......................................................................................CGTAAA--GAGGATCGCATGGATGTGTT.......................	26	1	1.00	0.00	0.00	0.00	0.00	1.00
...........................CGTGGATG--------------------------------------TTTGGC---GTATC..................................................	19	1	1.00	0.00	0.00	0.00	1.00	0.00

super_4:860915-860970 +

18.7

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG TT------------------------------------------------------------TGTGGCAAAGATCTTGGAATCGTCGGCAAAGTC--------------------GAAAATCTTCCGATCCCCCAA	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.................................................................GGCAAAGATCTTGGAATCGTCGGC...............................................	24	1	4.00	0.00	0.00	0.00	0.00	4.00
................................................................TGGCxAAGATCTCGGAATCGTCGG................................................	23	1	1.00	0.00	1.00	0.00	0.00	0.00
.....................................................................AAGATCTTGGAATCGTCGGCA..............................................	21	1	1.00	0.00	0.00	0.00	0.00	1.00
.................................................................GGCAAAGATCTTGGAATCGTCGGCAAAG...........................................	28	1	1.00	0.00	0.00	0.00	0.00	1.00
..........................................................................CTTGGAATCGTCGGCAAAGTC--------------------.....................	21	1	1.00	0.00	0.00	0.00	0.00	1.00
..........................................................................CTTGGAATCGTCGGCAAAG...........................................	19	1	1.00	0.00	0.00	0.00	0.00	1.00

droWil1 - 18 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_180700:6220771-6220943 +

34.52

TTTTCGTT------------------TACTTTT---------------------TAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGC--AGCACG-TGGAGCG------------------------ACGAGAACGGCCGTACA-ATACCCAAG TTTTTTTTTTTTAGTTTTTTTTGTTTTACCTTTTTGTTGAGGAAACATTTCAAAAAATTCTCCGTTTAAGTGCAA----------GAAACGTGCTCTGC-CTACG-------------------CCAAAAGTGGATTTAACACAATCGAAAGAAATTTTTTGTATATATTTTGGATTTAAATACGGCCGTAAACATTCCAAAA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
...............................................................................................................................................................TTATATATATTTTGGATC..........................	18	5	0.60	0.00	0.00	0.00	0.60
..........................................................................................................................................................AATTTGTGTATATATTTT...............................	18	2	1.00	0.00	1.00	0.00	0.00
............AGTTTTTTTTGTTTTGGC.............................................................................................................................................................................	18	2	1.00	0.00	0.00	0.00	1.00
.....ATTTTTTAGTGTTTTTTG....................................................................................................................................................................................	18	2	0.50	0.00	0.50	0.00	0.00
...................................................................................................................................................................ATATATTTCTGATTTAAAT.....................	19	1	1.00	0.00	1.00	0.00	0.00
........................................................................CAA----------GAAACGTGCTCTGC-CTACG-------------------CC.............................................................................	24	1	1.00	0.00	0.00	1.00	0.00
......................................................................................................................................................................TTTTTAGGATTTAAATAC...................	18	1	1.00	0.00	1.00	0.00	0.00
.........................................................................................................................................................AATTTGGTGTATATATTTT...............................	19	1	1.00	0.00	1.00	0.00	0.00
...............................................................................................................................................................TTGTAAATCTTTTGGATT..........................	18	1	1.00	0.00	0.00	0.00	1.00
...................................................................................................................................................GCAAGAAATTTTTAGTAT......................................	18	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................................................................................AATTGTTGTATATATTTT...............................	18	4	0.25	0.00	0.00	0.25	0.00
.......................................................AATTCTCGCTTTAAGTGCA.................................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
......TTTTTTAGATTTGTTTGT...................................................................................................................................................................................	18	9	0.11	0.00	0.11	0.00	0.00
.....TTTTTATAGTTTTTTTTTTTT.................................................................................................................................................................................	21	7	0.14	0.00	0.14	0.00	0.00
.............................................................................................................................................................TTTTATATATATTTTGGATC..........................	20	2	0.50	0.00	0.00	0.00	0.50
.....................................................................................GAAACGTGCTCTGC-CTACG-------------------CC.............................................................................	21	1	1.00	0.00	0.00	1.00	0.00
...............................................................................................................................................AATCAAAAGTAATTTTTT..........................................	18	6	0.17	0.00	0.17	0.00	0.00
............................................................................................................................................CACAATCGAAAGAAATTTTTTGT........................................	23	1	1.00	0.00	1.00	0.00	0.00
...............................................................................................................................................AAGCAAAAGAAATTTTTT..........................................	18	5	0.20	0.00	0.20	0.00	0.00

153

scaffold_180949:4957221-4957289 -

27.51

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAG-TCTTGCACCGTTCCAAAA--GAGAGCAGCACGTGGAGCGACGAGAACGGCCG-TACAATACCCAAG ------------------------------------------------------------------GCAGCAGCATTTGTACC-----AACAGCAGCAGCACCACCAACAACAACAACAACAACAGCAACACTATCTGCA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.............................................................................................................AACAACAACAACAACCGTAA...........	20	30	0.10	0.00	0.10	0.00	0.00
..............................................................................................................AAAACATCAACAACAGCAA...........	19	45	0.07	0.00	0.07	0.00	0.00
..............................................................................................................ACAACAACAACAACAGCAAC..........	20	410	0.00	0.00	0.00	0.00	0.00
.............................................................................................................AAAAACATCAACAACAGCAA...........	20	39	0.05	0.00	0.05	0.00	0.00
.............................................................................................AAGCAGCATCACCAACAAC............................	19	11	0.18	0.00	0.18	0.00	0.00
................................................................................................................AACAACAACAAAAGCAACA.........	19	35	0.06	0.00	0.06	0.00	0.00
................................................................................................................AACAACAACAACAGCAACACA.......	21	5	0.40	0.00	0.00	0.40	0.00
........................................................................................AGCAGCAGCAGCACCACCACC...............................	21	39	0.05	0.00	0.05	0.00	0.00
..........................................................................................................AACAACAACAACAACAAGAG..............	20	33	0.03	0.00	0.03	0.00	0.00
.............................................................................................AAGCAGCATCACCAACAACAA..........................	21	9	0.11	0.11	0.00	0.00	0.00
.................................................................................................AGCTCGACCAACAACAAC.........................	18	3	0.33	0.00	0.33	0.00	0.00
.........................................................................................................CAACACCAACAACAACAACAGC.............	22	39	0.03	0.00	0.03	0.00	0.00
............................................................................................................CAACAAGAACAACAACAGCAA...........	21	15	0.07	0.00	0.07	0.00	0.00
.............................................................................................................AACAAGATCAACAACAGCAACA.........	22	29	0.03	0.00	0.03	0.00	0.00
.............................................................................................................AACAACAACACCAACAGCAAC..........	21	585	0.00	0.00	0.00	0.00	0.00
...............................................................................................................CAACTACAACAACAGGAAC..........	19	42	0.02	0.00	0.02	0.00	0.00
.............................................................................................................CAAAACAACAACAACAGCAACA.........	22	25	0.04	0.00	0.04	0.00	0.00
..........................................................................................................AACAAAAACAACAAGAACAGCA............	22	28	0.04	0.00	0.04	0.00	0.00
............................................................................................GCAGCAGCACCACCAAAAGC............................	20	8	0.13	0.00	0.13	0.00	0.00
........................................................................................................CCAACAACAACAATAACAT.................	19	49	0.02	0.00	0.02	0.00	0.00
..............................................................................................................ATACCAACAACAACAGCAACA.........	21	40	0.03	0.00	0.03	0.00	0.00
..........................................................................................................AACAACAACAACAACAAAAG..............	20	43	0.02	0.00	0.02	0.00	0.00
..............................................................................................................ACAACAACAACAACAGCAACGCG.......	23	15	0.07	0.00	0.00	0.07	0.00
........................................................................................ACCAGCAGCAGCACCACCACCA..............................	22	12	0.08	0.00	0.00	0.08	0.00
..........................................................................................................AACAACAACAACAAGAACAGA.............	21	43	0.02	0.00	0.02	0.00	0.00
...........................................................................................AGTAGCAGCGCCACCAACA..............................	19	2	0.50	0.00	0.50	0.00	0.00
..............................................................................................AGCAGCAACACCTACAACAACAAC......................	24	43	0.02	0.00	0.02	0.00	0.00
..........................................................................................................AACAACAACAACAACACCAGCCA...........	23	31	0.03	0.00	0.03	0.00	0.00
................................................................................................AAGCACAACCAACAACAAC.........................	19	9	0.11	0.00	0.11	0.00	0.00
...........................................................................................................ACAACAACAACAACAACAGCA............	21	430	0.00	0.00	0.00	0.00	0.00
................................................................................................................AACAACAACAACAGCAACGCGATCTGC.	27	2	0.50	0.00	0.50	0.00	0.00
...........................................................................................................ACACGAACAACAACAACAG..............	19	55	0.02	0.00	0.02	0.00	0.00
..........................................................................................................AACAACAACAACCACAATAGCAAC..........	24	13	0.08	0.00	0.08	0.00	0.00
...................................................................................................CACCACCAGCAACAACAACAC....................	21	15	0.07	0.00	0.07	0.00	0.00
...........................................................................................................ACAACAAAAACAACAACAGCAACA.........	24	275	0.00	0.00	0.00	0.00	0.00
.................................................................................................................ACAACAGCAACGGCAACAC........	19	39	0.03	0.00	0.03	0.00	0.00
..........................................................................................CAGCAGCAGCACCACCAC................................	18	10	0.10	0.00	0.10	0.00	0.00
.........................................................................................................CAACAACAACATCAACAACGGC.............	22	49	0.02	0.00	0.02	0.00	0.00
..............................................................................................................ACAACAACAACAACAGCAACACTCGC....	26	4	0.25	0.00	0.00	0.25	0.00
................................................................................................................AACAAAAACAACAGCAACACA.......	21	5	0.20	0.00	0.20	0.00	0.00
.................................................................................................................ACAACAATAACAGCAACA.........	18	43	0.02	0.00	0.02	0.00	0.00
..............................................................................................................ACAACAACAACTCCAGCAAC..........	20	48	0.02	0.00	0.02	0.00	0.00
...........................................................................................................ACAACAACAACAACGATAGCAAC..........	23	14	0.07	0.00	0.07	0.00	0.00
...............................................................................................................CAACAACAACAACAGCAACGCC.......	22	46	0.02	0.00	0.02	0.00	0.00
...........................................................................................AGCAGCAGCATCACCAACG..............................	19	17	0.06	0.00	0.00	0.06	0.00
.........................................................................................................CAACAACAACAACAACAACTGCTA...........	24	29	0.03	0.00	0.03	0.00	0.00
..............................................................................................................ATAACAACAACAACAGCAAGA.........	21	29	0.03	0.00	0.03	0.00	0.00
..............................................................................................................ACAACAACAACAACAGCAACAT........	22	19	0.05	0.00	0.05	0.00	0.00
............................................................................................................CAACAACAACATCAACAGGAAC..........	22	21	0.05	0.00	0.00	0.05	0.00
...........................................................................................AGCAGCAGCACCACCAAC...............................	18	11	0.09	0.00	0.09	0.00	0.00
..................................................................................C-----AACAGCAGCACCACCATC..................................	19	20	0.05	0.00	0.05	0.00	0.00
................................................................................................................AACAACAGCAACAGCAACACG.......	21	50	0.02	0.00	0.02	0.00	0.00
................................................................................ACC-----AACAGCGGCAGCACCAC...................................	20	4	0.25	0.00	0.25	0.00	0.00
................................................................................ACC-----AGCAGCAGCACCACCACCA.................................	22	12	0.08	0.00	0.00	0.08	0.00
..........................................................................................................GACAACAACAACAACAACAGCCA...........	23	25	0.04	0.00	0.04	0.00	0.00
..........................................................................................CAACAGCAGCACCACCATC...............................	19	20	0.05	0.00	0.05	0.00	0.00
.............................................................................................................AACAACAACAACACCAGCAAC..........	21	32	0.03	0.00	0.03	0.00	0.00
..........................................................................................CAGCAGGAGCACCACCAGC...............................	19	30	0.03	0.03	0.00	0.00	0.00
................................................................................................................AATAACAACAACAACAACACT.......	21	42	0.02	0.00	0.02	0.00	0.00
.............................................................................................AAGCAGCATCACCAACAACA...........................	20	11	0.09	0.00	0.09	0.00	0.00
..........................................................................ATTTxTACC-----AACAGCAGCAGCAGC.....................................	23	2	0.50	0.00	0.50	0.00	0.00
..............................................................................................................ACAACTCCAACAACAGCAACA.........	21	25	0.04	0.00	0.04	0.00	0.00
.........................................................................................................CAACAACAACAACAACAAGAGA.............	22	44	0.02	0.02	0.00	0.00	0.00
..............................................................................................................ACAACAACAACAACCGTAA...........	19	34	0.03	0.00	0.03	0.00	0.00
.............................................................................................................AACAACAACAACAGCAGCAAAAC........	23	24	0.04	0.00	0.04	0.00	0.00
..................................................................................................................CAACAACAACAGCAACAGT.......	19	31	0.03	0.00	0.03	0.00	0.00
................................................................................................................AACAAGAACAACAGCAACAC........	20	39	0.03	0.00	0.03	0.00	0.00
................................................................................................................AACAACAACAACAGCAACAT........	20	44	0.02	0.00	0.02	0.00	0.00
........................................................................................................CCAACAACAAGATCAACAACA...............	21	18	0.06	0.00	0.06	0.00	0.00
......................................................................................................CACCAACAACAACAACAGCCAC................	22	42	0.02	0.00	0.02	0.00	0.00
............................................................................................................CACCAACAACAACAACAGCCAC..........	22	42	0.02	0.00	0.02	0.00	0.00
........................................................................................AACAGCAGCATCACCACCC.................................	19	2	0.50	0.00	0.50	0.00	0.00
...........................................................................................................ATAACAACAACAACACCAGCAACA.........	24	13	0.08	0.00	0.08	0.00	0.00
..............................................................................................AGCAGCACCTCCAACAACA...........................	19	27	0.04	0.00	0.04	0.00	0.00

scaffold_179706:777-822 +

22.89

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAA--TACCCAAG --------------------------------------------------------------------------------------------AGAGCAGCAGACAGGGCACGACAGGAGGCGGAACGATTTACCCAGG	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.........................................................................................................................................G	18	3	0.33	0.00	0.33	0.00	0.00
........................................................................................................AGGGCACGGCAGGAGGCGGAATGA..........	24	9	0.11	0.00	0.11	0.00	0.00
.......................................................................................................CAGGGCACGGCAGGAGGCGGAAC............	23	9	0.11	0.00	0.11	0.00	0.00

scaffold_184833:802-847 +

19.4

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAA--TACCCAAG --------------------------------------------------------------------------------------------AGAGCGGCAGACAGGGCACGGCAGGAGGCGGAACGATTTACCCAGG	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
....................................................................................................................................CTCAGG	21	32	0.06	0.00	0.06	0.00	0.00
................................................................................................................GCAGGAGGCGGAACGGGT........	18	7	0.14	0.14	0.00	0.00	0.00
........................................................................................................AGGGCACGGCAGGAGGCGGAATGA..........	24	9	0.11	0.00	0.11	0.00	0.00
........................................................................................................AGGGCACGGCAGGAGGCGGACT............	22	8	0.13	0.00	0.13	0.00	0.00
.......................................................................................................CAGGGCACGGCAGGAGGCGGAAC............	23	9	0.11	0.00	0.11	0.00	0.00
...............................................................................................................GGCAGGAGGCGGAACGGGT........	19	7	0.14	0.14	0.00	0.00	0.00

scaffold_187488:457-502 +

19.4

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAA--TACCCAAG --------------------------------------------------------------------------------------------AGAGCGGCAGACAGGGCACGGCAGGAGGCGGAACGATTTACCCAGG	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
................................................................................................................GCAGGAGGCGGAACGGGT........	18	7	0.14	0.14	0.00	0.00	0.00
........................................................................................................AGGGCACGGCAGGAGGCGGAATGA..........	24	9	0.11	0.00	0.11	0.00	0.00
........................................................................................................AGGGCACGGCAGGAGGCGGACT............	22	8	0.13	0.00	0.13	0.00	0.00
.......................................................................................................CAGGGCACGGCAGGAGGCGGAAC............	23	9	0.11	0.00	0.11	0.00	0.00
...............................................................................................................GGCAGGAGGCGGAACGGGT........	19	7	0.14	0.14	0.00	0.00	0.00

199

scaffold_189535:1139-1184 -

19.4

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAA--TACCCAAG --------------------------------------------------------------------------------------------AGAGCGGCAGACAGGGCACGGCAGGAGGCGGAACGATTTACCCAGG	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
................................................................................................................GCAGGAGGCGGAACGGGT........	18	7	0.14	0.14	0.00	0.00	0.00
........................................................................................................AGGGCACGGCAGGAGGCGGAATGA..........	24	9	0.11	0.00	0.11	0.00	0.00
........................................................................................................AGGGCACGGCAGGAGGCGGACT............	22	8	0.13	0.00	0.13	0.00	0.00
.......................................................................................................CAGGGCACGGCAGGAGGCGGAAC............	23	9	0.11	0.00	0.11	0.00	0.00
...............................................................................................................GGCAGGAGGCGGAACGGGT........	19	7	0.14	0.14	0.00	0.00	0.00

174

scaffold_181100:128879-128924 -

19.4

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAA--TACCCAAG --------------------------------------------------------------------------------------------AGAGCGGCAGACAGGGCACGGCAGGAGGCGGAACGATTTACCCAGG	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
................................................................................................................GCAGGAGGCGGAACGGGT........	18	7	0.14	0.14	0.00	0.00	0.00
........................................................................................................AGGGCACGGCAGGAGGCGGAATGA..........	24	9	0.11	0.00	0.11	0.00	0.00
........................................................................................................AGGGCACGGCAGGAGGCGGACT............	22	8	0.13	0.00	0.13	0.00	0.00
.......................................................................................................CAGGGCACGGCAGGAGGCGGAAC............	23	9	0.11	0.00	0.11	0.00	0.00
...............................................................................................................GGCAGGAGGCGGAACGGGT........	19	7	0.14	0.14	0.00	0.00	0.00

194

scaffold_181838:1058-1103 -

19.4

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAA--TACCCAAG --------------------------------------------------------------------------------------------AGAGCGGCAGACAGGGCACGGCAGGAGGCGGAACGATTTACCCAGG	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.......................................................................................................................................AAG	18	3	0.33	0.00	0.33	0.00	0.00
................................................................................................................GCAGGAGGCGGAACGGGT........	18	7	0.14	0.14	0.00	0.00	0.00
........................................................................................................AGGGCACGGCAGGAGGCGGAATGA..........	24	9	0.11	0.00	0.11	0.00	0.00
........................................................................................................AGGGCACGGCAGGAGGCGGACT............	22	8	0.13	0.00	0.13	0.00	0.00
.......................................................................................................CAGGGCACGGCAGGAGGCGGAAC............	23	9	0.11	0.00	0.11	0.00	0.00
...............................................................................................................GGCAGGAGGCGGAACGGGT........	19	7	0.14	0.14	0.00	0.00	0.00

186

scaffold_181139:531271-531316 -

19.4

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAA--TACCCAAG --------------------------------------------------------------------------------------------AGAGCGGCAGACAGGGCACGGCAGGAGGCGGAACGATTTACCCAGG	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.......................................................................................................................................AAG	18	3	0.33	0.00	0.33	0.00	0.00
................................................................................................................GCAGGAGGCGGAACGGGT........	18	7	0.14	0.14	0.00	0.00	0.00
........................................................................................................AGGGCACGGCAGGAGGCGGAATGA..........	24	9	0.11	0.00	0.11	0.00	0.00
........................................................................................................AGGGCACGGCAGGAGGCGGACT............	22	8	0.13	0.00	0.13	0.00	0.00
.......................................................................................................CAGGGCACGGCAGGAGGCGGAAC............	23	9	0.11	0.00	0.11	0.00	0.00
...............................................................................................................GGCAGGAGGCGGAACGGGT........	19	7	0.14	0.14	0.00	0.00	0.00

130

scaffold_180702:3267193-3267238 -

19.31

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG ----------------------------------------------------------------------------------------AACGACAACAACAACTACAACCACGACAACAACA--ACAACAACTACA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.................................................................................................................ATAAGAACA--ACAACAACT...	18	29	0.17	0.00	0.00	0.00	0.17
.............................................................................................................GACGACGACAACA--ACAACAAC....	21	13	0.31	0.00	0.00	0.00	0.31
..........................................................................................................GACGACGACAACAACA--ACAAC.......	21	13	0.31	0.00	0.00	0.00	0.31
.................................................................................................................ATAAGAACA--ACAACAACTA..	19	22	0.09	0.00	0.09	0.00	0.00
...............................................................................................................CTACAAGAACA--ACAACAACT...	20	23	0.09	0.00	0.00	0.00	0.09
................................................................................................CAACAACGACAACGACGA......................	18	17	0.06	0.00	0.06	0.00	0.00
.........................................................................................................................A--ACAGCAACAACA	18	4	0.25	0.00	0.00	0.25	0.00
.............................................................................................................GACGACGACAACA--ACAACAA.....	20	15	0.07	0.00	0.07	0.00	0.00
.....................................................................................................................CAACA--ACAGCAACAACA	21	10	0.10	0.00	0.10	0.00	0.00
..........................................................................................................GACGACGACAACAACA--ACAA........	20	15	0.07	0.00	0.07	0.00	0.00
........................................................................................AAAGACAACAACAACCACAACCA.........................	23	1	1.00	0.00	0.00	1.00	0.00
...........................................................................................................ACGACGACAACAACC--ACAACAACT...	24	1	1.00	1.00	0.00	0.00	0.00
............................................................................................................CAACGACAACAACA--ACAACAACTAG.	25	11	0.09	0.09	0.00	0.00	0.00
.............................................................................................................CACCACAACAACC--ACAACAAC....	21	16	0.06	0.06	0.00	0.00	0.00
...........................................................................................GACAACAACAACTACAACCACG.......................	22	1	1.00	1.00	0.00	0.00	0.00
.................................................................................................................ACAACAACA--GCAACAACTA..	19	42	0.02	0.00	0.02	0.00	0.00
.............................................................................................................GACGACGACAACA--ACAACAACT...	22	2	0.50	0.00	0.00	0.00	0.50
..............................................................................................................ACGACAACGACA--ACAACCAC....	20	11	0.09	0.00	0.09	0.00	0.00
................................................................................................CAACAACTTCAACCACAACAACAAC...............	25	7	0.14	0.00	0.14	0.00	0.00
.........................................................................................AAGACAACAACAACCACAACC..........................	21	1	1.00	0.00	0.00	1.00	0.00
......................................................................................................................AACA--ACAGCAACAACA	20	10	0.10	0.00	0.10	0.00	0.00
..............................................................................................AACAACAACTACAACAAGGA......................	20	22	0.05	0.00	0.05	0.00	0.00
.................................................................................................................ACAACAACA--ACAAGAACTAT.	20	36	0.03	0.00	0.03	0.00	0.00
..............................................................................................................ACTACAAGAACA--ACAACAACT...	21	21	0.05	0.00	0.00	0.00	0.05

scaffold_179974:2259-2304 -

18.66

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAA--TACCCAAG --------------------------------------------------------------------------------------------AGAGCGGCAGACAGGGCACGGCAGGAGGCGGAACGTTTTACCCAGG	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
................................................................................................................GCAGGAGGCGGAACGGGT........	18	7	0.14	0.14	0.00	0.00	0.00
........................................................................................................AGGGCACGGCAGGAGGCGGAATGA..........	24	9	0.11	0.00	0.11	0.00	0.00
........................................................................................................AGGGCACGGCAGGAGGCGGACT............	22	8	0.13	0.00	0.13	0.00	0.00
.......................................................................................................CAGGGCACGGCAGGAGGCGGAAC............	23	9	0.11	0.00	0.11	0.00	0.00
...............................................................................................................GGCAGGAGGCGGAACGGGT........	19	7	0.14	0.14	0.00	0.00	0.00

159

scaffold_181075:1010077-1010119 -

18.66

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTA-CAATACCCAAG ----------------------------------------------------------------------------------------------AACAGCAACTGCAGCAGCAACAACAACAGCAGCAACAACAACA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.................................................................................................................ACAAGAACAGCAGCAAGAAC....	20	53	0.09	0.00	0.00	0.00	0.09
...............................................................................................................CAACAACAACAGCAGCAACAACA...	23	45	0.04	0.00	0.04	0.00	0.00
.................................................................................................................ACAACAACAGCAGCAACAACA...	21	46	0.04	0.00	0.04	0.00	0.00
.................................................................................................................ATAACGACAGCAGCAACAAC....	20	50	0.02	0.00	0.02	0.00	0.00
.......................................................................................................TGCAGCAGCAACAACAACAGCAGCAACA......	28	35	0.03	0.00	0.03	0.00	0.00
................................................................................................................AACAACAACAGCAGCAACAACAAC.	24	39	0.03	0.00	0.03	0.00	0.00
......................................................................................................................AACAACAGCAACAGCAACA	21	50	0.02	0.00	0.02	0.00	0.00
.....................................................................................................ACTCCAGCAGCAACAACAACAACAGCA.........	27	33	0.03	0.00	0.03	0.00	0.00
.....................................................................................................................CACCACCAGCAACAACAACA	21	15	0.07	0.00	0.07	0.00	0.00
...............................................................................................................CAACAAGAACAGCAGCAAGAAC....	22	51	0.02	0.00	0.00	0.00	0.02
............................................................................................................CAGCAACAACATCAGCAGCAACAACA...	26	51	0.02	0.00	0.02	0.00	0.00
...............................................................................................ACAGCAAATGCAGCAGCAAC......................	20	45	0.02	0.00	0.00	0.02	0.00
.......................................................................................................TTAAGCAGCAACAACAACA...............	19	33	0.03	0.00	0.00	0.03	0.00
................................................................................................................AACAACAACAGCAGCAACAACAACG	25	165	0.01	0.00	0.00	0.01	0.00
.................................................................................................................ACAAAAACAGCAGCAACAAGAA..	22	40	0.03	0.03	0.00	0.00	0.00
..............................................................................................GACAGCAACTGCAGCAGT.........................	18	13	0.08	0.00	0.08	0.00	0.00
....................................................................................................................ACAACAGCAGCAACAACAACA	21	49	0.02	0.00	0.02	0.00	0.00
................................................................................................................AACAACAACAGGAGCAACAACA...	22	55	0.02	0.00	0.02	0.00	0.00
.................................................................................................................ACAACAACAGCAGCAACAAC....	20	47	0.02	0.00	0.02	0.00	0.00
.............................................................................................................AGCAACAACAACAGCAGCAACAA.....	23	34	0.03	0.00	0.03	0.00	0.00
..................................................................................................................CAACAACAGCAGCAACAACAACA	23	47	0.02	0.00	0.00	0.02	0.00
...............................................................................................................CAACAACAACAGCAGCAACAACAACA	26	36	0.03	0.00	0.03	0.00	0.00

152

scaffold_180764:128245-128289 -

17.16

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG -------------------------------------------------------------------------------------------GGGAGCAGCACCCACCGTGCCGGGTCAAGCATCCGCCTATCCAGG	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
...........................................................................................................GTGCCGGGTCAAGCATCC...........	18	1	1.00	0.00	1.00	0.00	0.00

scaffold_184833:881-920 +

17.06

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG ----------------------------------------------------------------------------------------------AACAGCAACGGCAGCAACAACAACAGCA--ACAACAACTGCA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
..............................................................................................AACAGCAACGGCAGCAACGGC.....................	21	27	0.15	0.00	0.15	0.00	0.00
............................................................................................................CAACAACAACAGCA--ACGACGA.....	21	40	0.05	0.00	0.03	0.03	0.00
.........................................................................................................................A--ACAACTACAGCA	18	23	0.09	0.00	0.09	0.00	0.00
.............................................................................................................AACAACAACAGCA--ACATCCACT...	22	17	0.06	0.00	0.06	0.00	0.00
......................................................................................................TGGCAGCAACAACAACAGCA--ACAA........	24	12	0.08	0.00	0.08	0.00	0.00
...............................................................................................................CAACAACAGCA--ACAAAAAC....	19	46	0.02	0.00	0.02	0.00	0.00
....................................................................................................AACGGCAACAACAACAAC..................	18	39	0.03	0.00	0.03	0.00	0.00
............................................................................................................GAAGAACAACAGCA--ACAACAA.....	21	34	0.03	0.00	0.03	0.00	0.00
................................................................................................................ATCAACAGCA--ACAACAAATGC.	21	32	0.03	0.00	0.03	0.00	0.00
...................................................................................................CAACGGCAGCAACATCAAGAG................	21	5	0.20	0.00	0.20	0.00	0.00
............................................................................................................CAACAACAACTGCA--ACAACA......	20	47	0.02	0.00	0.02	0.00	0.00
...........................................................................................................GCAACATCAACAGCA--ACACCAAC....	23	51	0.02	0.00	0.02	0.00	0.00
................................................................................................CAGCAACGGCAGCAACAAC.....................	19	44	0.02	0.00	0.02	0.00	0.00
............................................................................................................GAAGAACAACAGCA--ACAAC.......	19	47	0.02	0.00	0.02	0.00	0.00
.............................................................................................................AACTACAACAGCA--ACAACAAC....	21	35	0.03	0.00	0.03	0.00	0.00
................................................................................................................AACAACAGCA--ACAACAAC....	18	42	0.02	0.00	0.02	0.00	0.00
...............................................................................................................CAGGAACAGCA--ACAACAACTGC.	22	44	0.02	0.00	0.02	0.00	0.00
...............................................................................................................GAACAAGAGCA--ACAACAAC....	19	49	0.02	0.00	0.02	0.00	0.00
...............................................................................................................CAACAACAACA--ACAACAACTGCT	24	29	0.03	0.00	0.03	0.00	0.00
................................................................................................................AACAAGAGCA--GCAACAACTGCA	22	34	0.03	0.03	0.00	0.00	0.00
...............................................................................................................CAACAACAGCA--ACAACAAC....	19	40	0.03	0.00	0.03	0.00	0.00
...............................................................................................CCAGCAACGCCAGCAACA.......................	18	19	0.05	0.00	0.05	0.00	0.00
..............................................................................................................ACAACAACAGCA--ACAACTA.....	19	42	0.02	0.00	0.02	0.00	0.00
............................................................................................................CAACAACAACAGCA--AGAACAA.....	21	31	0.03	0.00	0.03	0.00	0.00
........................................................................................................................CA--ACAACTACAGCA	19	23	0.04	0.00	0.04	0.00	0.00
..........................................................................................................AGAAACAACAAAAGCA--ACAAC.......	21	18	0.06	0.00	0.06	0.00	0.00
...................................................................................................CAACGGCAGCAATGACAACAGC...............	22	3	0.33	0.00	0.00	0.33	0.00
............................................................................................................AAACAACAACAGCA--ACAAGAACT...	23	12	0.08	0.00	0.00	0.08	0.00
...............................................................................................ACAGCAACGGCAGCAACGGC.....................	20	27	0.04	0.00	0.04	0.00	0.00
.................................................................................................................ACAACGGCA--ACAACAAGT...	18	18	0.06	0.00	0.06	0.00	0.00
..................................................................................................GCAACGGCAGCAACACCAC...................	19	6	0.17	0.00	0.00	0.17	0.00
............................................................................................................CAACAACAACAGCA--ACTACGA.....	21	43	0.02	0.00	0.02	0.00	0.00
..........................................................................................................ACCAACAACAACAGCA--ACAACGACT...	25	13	0.08	0.00	0.00	0.08	0.00
......................................................................................................TGGCAGCAACAACAACAGCA--ACAACAA.....	27	11	0.09	0.00	0.09	0.00	0.00

198

scaffold_189535:949-988 -

17.06

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG ----------------------------------------------------------------------------------------------AGCAACAATTGCAGCAACAACAGCAACAG--CAGCAACAATG	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.................................................................................................AACAATTGCAGCAACAACAGCA.................	22	31	0.06	0.00	0.06	0.00	0.00
..........................................................................................................AGCAACATCTGCAACAG--CAGCAAC....	24	31	0.06	0.00	0.06	0.00	0.00
.........................................................................................................CAGCAACAACAGCAACAG--CAG........	21	32	0.03	0.00	0.00	0.03	0.00
......................................................................................................TTGCAACAACAACATCAACAG--CA.........	23	34	0.03	0.00	0.03	0.00	0.00
...............................................................................................................CAACAGCAACAG--CAGCAACAATG	24	45	0.02	0.00	0.02	0.00	0.00
..........................................................................................................AGCAACAACAGCAACAG--CCG........	20	37	0.03	0.00	0.03	0.00	0.00
..........................................................................................................AGCAACTACAGCAAGAG--CAGCA......	22	31	0.03	0.03	0.00	0.00	0.00
...........................................................................................................GCAACAACAGCAACAG--CAGC.......	20	42	0.02	0.00	0.02	0.00	0.00
..........................................................................................................AGCAACAACGGCAACAG--C..........	18	60	0.02	0.00	0.02	0.00	0.00
.............................................................................................................AACAATAGCAACAG--CAGCAAGAA..	23	23	0.04	0.00	0.04	0.00	0.00
................................................................................................CAACAATTGCAGCAACAACAGCAA................	24	30	0.03	0.00	0.03	0.00	0.00
............................................................................................................CAACAATAGCAACAG--CAGCAAGA...	23	28	0.04	0.00	0.04	0.00	0.00
..............................................................................................AGCAACAGTTGCAGCAAT........................	18	39	0.03	0.00	0.00	0.03	0.00
................................................................................................AAACAATTGCAGCAAAAA......................	18	89	0.01	0.00	0.01	0.00	0.00
........................................................................................................................CAG--CAGCAGCAATG	19	41	0.02	0.00	0.02	0.00	0.00
............................................................................................................CAACAAGAGCAACAA--CAGCAACAA..	24	42	0.02	0.00	0.02	0.00	0.00
.............................................................................................................AACAACAGCAACAG--CAGCGACAATG	25	27	0.04	0.00	0.04	0.00	0.00
.................................................................................................GACAAATGCAGCAACAACA....................	19	37	0.03	0.00	0.03	0.00	0.00
.........................................................................................................................AG--CAGCAGCAATG	18	41	0.02	0.00	0.02	0.00	0.00
..........................................................................................................AGCAACAACAGCAACAG--CAGC.......	21	31	0.03	0.00	0.03	0.00	0.00
.......................................................................................................TGCAACAACAATAGCAACAG--CAGC.......	24	40	0.03	0.00	0.03	0.00	0.00
....................................................................................................AATTGCAGCAACAACAACA.................	19	48	0.02	0.00	0.02	0.00	0.00
..............................................................................................AGCGACAAATGCAGCAACAAC.....................	21	24	0.04	0.00	0.04	0.00	0.00
................................................................................................CAACAGTTGCAGCAACAACA....................	20	31	0.03	0.00	0.03	0.00	0.00
......................................................................................................TTGCAGCAACAACAGCAACAG--CAG........	24	20	0.05	0.00	0.05	0.00	0.00
...................................................................................................CAATTGCTGCAAGAACAG...................	18	16	0.06	0.00	0.06	0.00	0.00

193

scaffold_181838:868-907 -

17.06

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG ----------------------------------------------------------------------------------------------AGCAACAATTGCAGCAACAACAGCAACAG--CAGCAACAATG	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.................................................................................................AACAATTGCAGCAACAACAGCA.................	22	31	0.06	0.00	0.06	0.00	0.00
..........................................................................................................AGCAACATCTGCAACAG--CAGCAAC....	24	31	0.06	0.00	0.06	0.00	0.00
.........................................................................................................CAGCAACAACAGCAACAG--CAG........	21	32	0.03	0.00	0.00	0.03	0.00
......................................................................................................TTGCAACAACAACATCAACAG--CA.........	23	34	0.03	0.00	0.03	0.00	0.00
...............................................................................................................CAACAGCAACAG--CAGCAACAATG	24	45	0.02	0.00	0.02	0.00	0.00
..........................................................................................................AGCAACAACAGCAACAG--CCG........	20	37	0.03	0.00	0.03	0.00	0.00
..........................................................................................................AGCAACTACAGCAAGAG--CAGCA......	22	31	0.03	0.03	0.00	0.00	0.00
...........................................................................................................GCAACAACAGCAACAG--CAGC.......	20	42	0.02	0.00	0.02	0.00	0.00
.............................................................................................................AACAATAGCAACAG--CAGCAAGAA..	23	23	0.04	0.00	0.04	0.00	0.00
................................................................................................CAACAATTGCAGCAACAACAGCAA................	24	30	0.03	0.00	0.03	0.00	0.00
............................................................................................................CAACAATAGCAACAG--CAGCAAGA...	23	28	0.04	0.00	0.04	0.00	0.00
..............................................................................................AGCAACAGTTGCAGCAAT........................	18	39	0.03	0.00	0.00	0.03	0.00
................................................................................................AAACAATTGCAGCAAAAA......................	18	89	0.01	0.00	0.01	0.00	0.00
........................................................................................................................CAG--CAGCAGCAATG	19	41	0.02	0.00	0.02	0.00	0.00
............................................................................................................CAACAAGAGCAACAA--CAGCAACAA..	24	42	0.02	0.00	0.02	0.00	0.00
.............................................................................................................AACAACAGCAACAG--CAGCGACAATG	25	27	0.04	0.00	0.04	0.00	0.00
.................................................................................................GACAAATGCAGCAACAACA....................	19	37	0.03	0.00	0.03	0.00	0.00
.........................................................................................................................AG--CAGCAGCAATG	18	41	0.02	0.00	0.02	0.00	0.00
..........................................................................................................AGCAACAACAGCAACAG--CAGC.......	21	31	0.03	0.00	0.03	0.00	0.00
.......................................................................................................TGCAACAACAATAGCAACAG--CAGC.......	24	40	0.03	0.00	0.03	0.00	0.00
....................................................................................................AATTGCAGCAACAACAACA.................	19	48	0.02	0.00	0.02	0.00	0.00
..............................................................................................AGCGACAAATGCAGCAACAAC.....................	21	24	0.04	0.00	0.04	0.00	0.00
................................................................................................CAACAGTTGCAGCAACAACA....................	20	31	0.03	0.00	0.03	0.00	0.00
......................................................................................................TTGCAGCAACAACAGCAACAG--CAG........	24	20	0.05	0.00	0.05	0.00	0.00
............................................................................................................CAACAACAGTAACAG--CAGCA......	20	57	0.02	0.00	0.02	0.00	0.00
...................................................................................................CAATTGCTGCAAGAACAG...................	18	16	0.06	0.00	0.06	0.00	0.00

103

scaffold_180699:1556876-1556895 -

13.43

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG
TTTTCGTTTACATTTTCACC--------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V117
Male body

V118
Embryo

V119
Head

M020
Head

None

162

scaffold_181096:4249787-4249805 -

10.45

Size

Hit Count

Total Norm

V117
Male body

V118
Embryo

V119
Head

M020
Head

None

droVir3 - 22 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

117

scaffold_12875:10810504-10810650 -

50.51

TTTTCGTTTACTTTTTAACCCTCCGC-----TCG---AGAACGTGGTTTCTTTTGCGACGTGCAAT-ACTC-------------------TGTGGCAG-AAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTAC-AATACCCAAG TTTTGATTTACTT--TAAT--TTCGTTTGCATCGATTAAAACGTG-TTTGT-TTG---CGTGCAATCACTTTTTCCACCGTGTCCCGGCGTGTGCGAGAAAGTCTTGCAACGTACAA------AACAACACGTT----GATAAGCACGGCCGCAAAAATTCCCAAA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
..................T--TTCxTTTGGATCGATTAAAA.............................................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
.....................................................TG---CGTGCAATCACTTTTTCCACCGTGTC..................................................................................	28	1	1.00	0.00	0.00	1.00	0.00	0.00

scaffold_12855:7725453-7725582 +

43.97

TTTTCGTTTACTTTTTAACCCT-CCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTC--------TTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG CATCCGCCTCCTGCACAACGGCTACGCACAC-----------CACATGTAGTGTGGACTAT--GGTGGTCGGGATATTTGCGGTGTGCATCGTTTAAACAACG-ATAG-AAGAGGACCCACGCCCACAGTGGAACAGCAGCAGCA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
..............................................................................................................................ATGTGGAACAGCAGCAGCA	19	11	0.18	0.00	0.18	0.00	0.00	0.00
..............................................................................................................................TAATGGAACAGCAGCAGC.	18	9	0.11	0.00	0.00	0.11	0.00	0.00
..........................................................................................................................................AGCAGCC	18	7	0.14	0.00	0.00	0.14	0.00	0.00
.............................................................................................................................AATGTGGAACAGCAGCAGCA	20	2	0.50	0.00	0.50	0.00	0.00	0.00
........................................................................................................ATAG-AAGAGGACCCACGCCCACA.................	23	1	1.00	0.00	0.00	0.00	1.00	0.00
.............................................................................................................................AATGTGGAACAGCAGCAGC.	19	2	0.50	0.00	0.50	0.00	0.00	0.00

scaffold_12932:1191238-1191368 +

42.41

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAG-AAGTCTTGCAC---CGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG ATGGCAGCAGCTGTTGCT---GCCGCGCGTGCGCATCAGTTGCTGACGAACGG-CTT--CGCCGCGCCGCATACGCATGCGCATGCGCATCATGTGGCAGCAGCAGCGGCAGCGGCAGCAGCAG---CAGCAGCGGCGGG	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.........................................................................................................GCGGCAGCGGCAGTAGCAG---CA...........	21	8	0.25	0.13	0.13	0.00	0.00	0.00
................................................................................................................................AGCAGCGTCGGG	18	4	0.50	0.00	0.00	0.00	0.25	0.25
.....................................................................................................AGCAGCGGGAGCGGGAGC.....................	18	31	0.03	0.00	0.00	0.03	0.00	0.00
..................................................................................................AGTAGCAGCGGCAGCGGCC.......................	19	30	0.03	0.00	0.00	0.03	0.00	0.00
..................................................................................ATGCGCTTCATGTTGCAG........................................	18	2	0.50	0.00	0.00	0.50	0.00	0.00
....................................................................................................................AGCAGCAC---CAGCACCGGCGG.	20	46	0.02	0.00	0.00	0.00	0.02	0.00
.......................................................................................................................AGCAG---CAGCAGCGTCGGG	19	20	0.05	0.00	0.05	0.00	0.00	0.00
.....................................................................................................GGCAGCGGCAGCGGCAGTAGCAG---CA...........	25	25	0.04	0.04	0.00	0.00	0.00	0.00
........................................................................................................AGAGGCAGCGCCAGCAGCAG---CA...........	22	17	0.06	0.06	0.00	0.00	0.00	0.00
.................................................................................................GAGCAGCAGCGGCAGAGGC........................	19	46	0.02	0.00	0.00	0.02	0.00	0.00
................................................................................................GCAGCAGCATTGGCAGCGGC........................	20	42	0.02	0.00	0.00	0.02	0.00	0.00
...................................................................................................................................AGCAGCGGG	18	31	0.03	0.00	0.00	0.03	0.00	0.00
....................................................................................................CATCAGCGGCAGCGGCAGA.....................	19	38	0.03	0.00	0.00	0.03	0.00	0.00
.......................................................................................................AAGCGACAGCGGCAGCAGCAG---C............	22	32	0.03	0.03	0.00	0.00	0.00	0.00
..............................................................................................................AGCGGCAGCAGCAG---CAGCAGC......	21	31	0.03	0.00	0.03	0.00	0.00	0.00
.....................................................................................................................GCAGCAG---GAGTAGCGGCGGG	20	6	0.17	0.00	0.17	0.00	0.00	0.00
......................................................................................................................CAGCAG---CAGCAGCGGCGGG	20	9	0.11	0.00	0.00	0.00	0.11	0.00
.....................................AGTTGCTGACGCGCGG-CT....................................................................................	18	3	0.33	0.00	0.00	0.00	0.33	0.00
....................................................................................................................AGCAACAG---CAGCAGCGGCGGC	27	42	0.02	0.02	0.00	0.00	0.00	0.00
..........................................................................................................CGGCAACGGCAGCAGCAG---CAC..........	21	30	0.03	0.00	0.00	0.03	0.00	0.00
....................................................................................................CAGCAACGGCAGAGGCAGCAG...................	21	21	0.05	0.05	0.00	0.00	0.00	0.00
..........................................................................................................................AG---CAGCAGCAGCGGG	20	46	0.02	0.02	0.00	0.00	0.00	0.00
.................................................................................................CAGCAGCAGCGGCAGCGGCACCAAC..................	25	30	0.03	0.00	0.00	0.03	0.00	0.00
...................................................................................................GTAGCAGAGGCAGCGGCA.......................	18	37	0.03	0.00	0.03	0.00	0.00	0.00
.TGGAAGCAGCTGTTGCT---GTC....................................................................................................................	20	2	0.50	0.00	0.50	0.00	0.00	0.00
......................................................................................................................CAGCAG---CAGCGCCGGCGGG	19	30	0.03	0.00	0.00	0.00	0.03	0.00
................................................................................................GCAGCAGCAGCGGCATCGGCA.......................	21	24	0.04	0.00	0.00	0.04	0.00	0.00

scaffold_12970:4162866-4162972 +

41.4

TTTT--CGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCC-----A--AAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTAC-AATACCCAAG CATTGTTGCCTA-----------------------------------TGCCAACAGCAGCA----GCAGCAGCAGCGAGGCATTGCCCAGCGGCAGCAGCAACAGCAGCATTAACAGTGGCAGCAACGGCAACATTAACATTAACA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
...................................................AACAGCAGCA----GCAGCAGCAGCGT....................................................................	23	40	0.03	0.00	0.00	0.03	0.00	0.00
...............................................TGTCAATAGCAGCA----GCAGCA...........................................................................	20	23	0.04	0.00	0.04	0.00	0.00	0.00
.........CTT-----------------------------------CGCCAACAGCAGCA----GCAGCA...........................................................................	23	17	0.06	0.00	0.00	0.06	0.00	0.00
.......................................................................GCAGCGAGGCATTGCCCAGCGGCA...................................................	24	1	1.00	0.00	0.00	1.00	0.00	0.00
...................................................ATCAGCAGCA----GCAGCAGCAGCGA....................................................................	23	25	0.04	0.00	0.00	0.04	0.00	0.00
............................................................................GAGGCATTGCCCAGCGGCAGCAGCAAC...........................................	27	1	1.00	1.00	0.00	0.00	0.00	0.00
.........................................................ATCA----GCAGCAGCAGCGACGC.................................................................	20	23	0.04	0.04	0.00	0.00	0.00	0.00
........................................................................................AGCGTCAGCAGCAACAGCAGC.....................................	21	18	0.06	0.00	0.06	0.00	0.00	0.00

scaffold_12928:1184015-1184113 +

40.17

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACT-CTGTGGCAGAAGTCTTGCACCGTTCCAAAAG-----------AGAGCAGCACGTGGAGCGACGAGAACGGCCG-TACAATACCCAAG ----------------------------------------------GCAATCCGCATTTCTACTGGGGCAGCGGTCTCA-GCCACTACAACAGCAACATCAACAGCAGCAGCACCGGCAGCAGCAACAACAGCTTTCACAATA---GAA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
....................................................CGCATTTCxACTGGGCCAGC.............................................................................	19	1	465.00	234.00	24.00	19.00	143.00	45.00
....................................................CGCATTTCxACTGGGCCAG..............................................................................	18	1	194.00	21.00	0.00	1.00	130.00	42.00
.....................................................GCATTTCxACTGGGCCAGC.............................................................................	18	1	58.00	19.00	1.00	7.00	21.00	10.00
.................................................ATCCGCATTTCxACTGGGC.................................................................................	18	1	2.00	0.00	0.00	0.00	0.00	2.00
...................................................CCGCATTTCxACTGGGCCAG..............................................................................	19	1	2.00	1.00	0.00	0.00	1.00	0.00
.........................................................................................................CAATAGCACCGGCAGCAGCA........................	20	18	0.06	0.00	0.06	0.00	0.00	0.00
............................................................................................................................AACAACAGCGTTAACAAT.......	18	3	0.33	0.00	0.00	0.33	0.00	0.00
.........................................................................................ACAGCCACATCGACAGCAGC........................................	20	7	0.14	0.00	0.00	0.14	0.00	0.00
...........................................................CTACTGGGGCAGCGGTCTC.......................................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
.....................................................GCATTTxTACTGGGCCAGC.............................................................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
....................................................CGCATTTCxACTGGGACAGC.............................................................................	19	1	1.00	1.00	0.00	0.00	0.00	0.00

scaffold_12855:7978276-7978368 +

34.34

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCAC--CGTTCCAAAAGA---------GAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG T----------------------------------------------------GCAGCAGCGCCTAGCAGCAGCAGCGCAGCTCGTCGCAAAACCCAACTGCAGCAGCAGCAGCAGCAGCAACAACAACAGCAGC--AGCAGCAGCA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.................................................................................................ACTGCAGCAGCGGCAGCCGCA.............................	21	52	0.02	0.00	0.02	0.00	0.00	0.00
...........................................................................................AAGCGAACTGCAGCAGCA......................................	18	6	0.17	0.00	0.00	0.00	0.17	0.00
......................................................................................................................GCAACAACAACAGCAGC--AGCAGCAGC.	26	46	0.02	0.00	0.00	0.02	0.00	0.00

scaffold_13042:2190681-2190770 +

34.33

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCT-GTGGCAG--AAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG -------------------------------------------------ACGCGCAATCGCGTCGAGATAGCCGAGTTCAACAGCGTGCTGCAAGAGTACGACAAGCTGATGAAGGAGAGCCAGAGCAGCATGCAGAAA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
................................................................................................GTACGACAAGCTGGGGAAG........................	19	1	1.00	0.00	0.00	0.00	1.00	0.00
...................................................................................................CGATAAGATGATGAAGGA......................	18	1	1.00	0.00	0.00	1.00	0.00	0.00
...................................................................................................CGAGAAGATGATGAAGGA......................	18	1	1.00	0.00	0.00	1.00	0.00	0.00
....................................................................................................GACAAGCTGxTGAAGGGGAGC..................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................CTGCAGGAGAACGACAAGCTG..............................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
...................................................................................................CAACAAGCTGATGAAGAAGA....................	20	1	1.00	1.00	0.00	0.00	0.00	0.00

scaffold_13049:15441591-15441676 +

28.21

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG T---------------------------------------------ACGGCACACAAAACTTCAGTGCAGAT-----ACGTCCTTCAGCGCAGCTGCAGCTCCTGTGTCTGTGCAGCCGGCGCTAAACTTGGCGCC	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
....................................................CACAAAACTTCAGTGCAGAT-----ACGTC......................................................	25	1	1.00	0.00	0.00	1.00	0.00	0.00

137

scaffold_13042:270866-270939 -

26.89

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG TTTACGGCAACATT--AATGCTCAGCTCGCAGACGGATCATCT-----------------GCTGGAACAGCTGTCGGACGCCGTG-------------------------------------------GATCTCAG	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
....................................................................AGCTGTCGGAGCCCGTG-------------------------------------------G.......	18	1	1.00	0.00	0.00	0.00	0.00	1.00

104

scaffold_13049:23086895-23086964 +

26.87

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGC-CGTACAATA---------CCCAAG T----------------------------------------------------------------------------GCATCAGCAACAACGCATGCAGCTGCAGCAGCAACAACAACAGCTCGCACAACAGCAGCAGCAGCAAAG	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
..................................................................................................................................AGCAGCAGCATCAACG	19	29	0.07	0.00	0.00	0.00	0.07	0.00
.............................................................................................ATCCAGCAGCAGCAGCAACAACAA.............................	24	20	0.05	0.00	0.00	0.05	0.00	0.00
............................................................................................CATCCAGCAGCAGCAGCAACAA................................	22	25	0.04	0.04	0.00	0.00	0.00	0.00
..........................................................................................................................CGCACAGCAGCAGCAGCAGC....	20	37	0.03	0.00	0.00	0.03	0.00	0.00
........................................................................................................................CTCGGACACCAGCAGCAGC.......	19	8	0.13	0.00	0.00	0.00	0.13	0.00
.............................................................................................ATCCAGCAGCAGCAGCAACAAC...............................	22	47	0.02	0.02	0.00	0.00	0.00	0.00
...............................................................................................................................AACAGCATCAGCAGCAAAG	20	4	0.25	0.25	0.00	0.00	0.00	0.00

scaffold_12928:1644722-1644784 +

26.41

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG ---------------------------------------------------------------GCAGCGGAAGCCTTGCC------TGAAGGCGAAGAGCCAATGGAGGT----TGAGGGCCAGCCAATAACCGAG	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.................................................................................................AGCCGATGGAAGT----TGAGG.................	18	1	29.00	29.00	0.00	0.00	0.00	0.00
.................................................................................................AGCCGATGGAGTT----TGAGG.................	18	1	1.00	1.00	0.00	0.00	0.00	0.00

scaffold_12970:6318866-6318911 +

21.54

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG -------------------------------------------------------------------------------------CCAAACGATAGCAGCA---GCAGCAACAATAACAAATGGACATTA--AGAG	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
..............................................................................................AGCAGCA---GCAGCAACAATC....................	19	48	0.02	0.00	0.00	0.02	0.00	0.00
......................................................................................CAAACGACGGCAGCA---GCAGCA..........................	21	6	0.17	0.17	0.00	0.00	0.00	0.00

scaffold_12875:17905708-17905757 +

16.32

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG TTCTCTTTCATATCCT--------------GTAACTGGTATTTTATAAGCTGTATAACATTGTG------------------------------------------------------------------------	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
...............................................................G------------------------------------------------------------------------	18	34	0.03	0.00	0.00	0.00	0.03	0.00

158

scaffold_13052:1898286-1898326 -

16.03

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG ----------------------------------------------------------------------------------------------AGCTGCAGCAGCAGCAGCAGCAGCAGCAGTA-ATTAGCTGCA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
..................................................................................................GCAGCAGCAGCAGCAGCAGCAGCAGT............	26	37	0.03	0.00	0.00	0.03	0.00	0.00
............................................................................................................AAGCAGCAGxAGCAGTA-AT........	18	12	0.08	0.00	0.00	0.08	0.00	0.00

scaffold_12932:1650539-1650579 +

16.03

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG ----------------------------------------------------------------------------------------------AGCGGCAGCGGCAGCTGCGGCGGCAGCCGCACAGCGCATGG-	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.....................................................................................................GCGGCAGCGGCGGCGGCGGCC..............	21	38	0.03	0.00	0.00	0.03	0.00	0.00
.................................................................................................GGCAGCGGCAGxTGCGGCGGA..................	20	1	1.00	1.00	0.00	0.00	0.00	0.00

scaffold_12928:4642965-4643002 +

15.6

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG ------------------------------------------------------------------------------------------------CAACAACAGCAACAGCGACAGCAACAGTGCGA--CGCAAG	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
....................................................................................................AACAGCGACAGCGACAGCGAC...............	21	9	0.11	0.11	0.00	0.00	0.00	0.00
.................................................................................................AACAACATCAAAAGCGACA....................	19	5	0.20	0.00	0.20	0.00	0.00	0.00
.......................................................................................................AGCAACAGCGTCAGCA.................	16	31	0.03	0.00	0.03	0.00	0.00	0.00
......................................................................................................CAACAACAGCGACAGCAACAGT............	22	11	0.09	0.00	0.00	0.00	0.00	0.09

scaffold_13047:17059655-17059692 +

15.17

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG ---------------------------------------------------------------------------------------------GAACAGCAGCCGGAGCAGCCGGAACAGCA-----GCACCAGCA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.............................................................................................GAACAGCAGCCGGAGCAGCTT......................	21	1	5.00	4.00	1.00	0.00	0.00	0.00
.............................................................................................................AGCCGGAGCTGCA-----GCACC....	18	9	0.11	0.11	0.00	0.00	0.00	0.00
...............................................................................................................CCAGCACAGCA-----GCACCAGC.	19	19	0.05	0.00	0.00	0.05	0.00	0.00
..............................................................................................AACAGCAGCCGGAGCAGCTT......................	20	5	0.20	0.20	0.00	0.00	0.00	0.00
..................................................................................................................................CCAACA	19	5	0.20	0.00	0.00	0.20	0.00	0.00

102

scaffold_13049:17892147-17892182 +

14.93

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGA---GAACGGCCGTACAATACCCAAG
-----------------------------------------------------------------------------------------------------CATGGGGCCACAGCCGCAGCGGCC--ACAGTATCCGAT

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

116

scaffold_12875:5348405-5348430 -

11.5

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG -------------------------------------------------------------------------------------------------------------GGCAACAGCGGCCG-CCGCTGCCGCAG	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.............................................................................................................GGCAACAGCGGCGG-CCGCxGCCGCA.	24	1	1.00	0.00	0.00	1.00	0.00	0.00

scaffold_12875:20112878-20112902 +

10.45

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

None

148

scaffold_13047:13339474-13339487 -

5.97

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

None

droMoj3 - 31 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_6496:16132312-16132448 +

49.24

TTTT-CGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATAC-TC--------------------------TGTG-GCAGAAGTCT-TGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTAC-AATACCCAAG TTTTGCATCGA----------------TT-AAAACGTGTTT--GTTTGCGT-TTGCAACAACTTTTTCCACCGTGTCCCCCACCGGCGTGTGTGCGAAAAAGTCTTTGCAACGTTCCAAA------CAACACGT----CGATAAGTACGGCCGCAAAAATTCCTAAA	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
..........................................................................GTCCCCCACCGGCGTGTGTGCGAA.....................................................................	24	1	1.00	0.00	0.00	1.00	0.00

100

scaffold_6680:5602578-5602693 +

40.78

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGT-------GGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG
CCC-------------------ACGCTGGAGGCCACGGGCA---GTGCCACGCCCAACGCACAGCACTATGGGCTGAG-----TGCACTGCACAGCATGGGCACGCCGCCGGCATCGTCGAGTCCGATTCCGCCATATGGCGT

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

159

scaffold_6496:11033360-11033518 -

38.03

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAA---CGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGT--ACAATA-------------------------------CCCAAG ATTTCTCATGCATTTGAATTAACCGCTGTCCGTTTTACTGTTAATTATTGCGATAGGCAACAAACACTAACAAGAG-------------CAACAGGCAACAACAGCAACAGCAACAACAACAACTGGCTGCAACGCCAGCGCAATTCCCCCCATTTTAGCCATGGCCCGAAA	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
................................................................................................CAACAACAGCAAGAGCAACTA.......................................................	21	31	0.10	0.00	0.06	0.00	0.03
.........................................................................................CAACACGCCACAACAGCA.................................................................	18	5	0.20	0.00	0.00	0.00	0.20
.........................................................................................CAACAGGCAACAATAGCAAAA..............................................................	21	1	1.00	0.00	0.00	1.00	0.00
...............................................................................................................CAACAACAACAGCTGGCGG..........................................	19	13	0.08	0.08	0.00	0.00	0.00

scaffold_6473:15799956-15800062 +

37.69

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGC-GACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGA-----GCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG
C---------------------------CAGAGCGAAGTCTCTTCTGCTGGCGTCGAGC-------CGAGTAGCCCCCGGGTGGCTGCGACG-CGAGTGCTGCATCAGCCGGAGCAGCGAGCGGTGTGGTCGGCTGACAACG

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

148

scaffold_6482:2208351-2208438 -

36.08

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGT-TCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG ----------------------------------------------GTGACACGGAATATAGTGATGACAACATATTTGAGGCCAT--CAAGAAGAGCGGCAAATCGATAAAGGACTTGTGCCGTAACG-AACCAAA	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
...........................................................................TTGGAGGGCAT--CAAGAAGA.........................................	19	1	1.00	1.00	0.00	0.00	0.00

152

scaffold_6496:3818125-3818241 -

34.75

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCA---------------ATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAG------CACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG
CG----------------------TCGCGGGAT----------------ACGAACATCTCGTTGTCGCGCCGCAG---CAGCCAGAAGAGCAGCTACAGCCCGCAGGAGAGCTACTTTCCCATGAAGAGCGACGCCCTGTACAGTGCACCGCCCATT

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

111

scaffold_6680:17719251-17719337 +

31.37

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAG-----------AGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG ----------------------------------------------------------ACACAGCAGCAGCAACCAT-CGCTGTTGCAAAACCAGCAGCAGCAGCAGCAGCAACAGCAGCAACAGGAGCCGCTG-GCGGTAATTGCA	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.............................................................................................................GCAGCAGCAGCAACAGGAGCC.................	21	35	0.03	0.03	0.00	0.00	0.00
..............................................................................................................CAACAGCAGCAACAGGAGCCGC...............	22	9	0.11	0.11	0.00	0.00	0.00
............................................................ACAGCAGCAGCAATCAT-CAC..................................................................	20	12	0.08	0.00	0.08	0.00	0.00

scaffold_6540:5250312-5250383 +

29.77

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAA--GAGAGCAGCACGTGGAGCGACGAGAACGGCCGT-ACAATACCCAAG ------------------------------------------------------------------GCAAAAGT-TTGCACAATGCCAGCAACAGCAGCAGCAGCAGCAGCAGTAGCAGTAGCAGCAGCAGTAGCAGTA	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.....................................................................................................................AGTAGCAGCAGCCGTAGCCG..	20	49	0.02	0.00	0.00	0.00	0.02

scaffold_6496:23225985-23226036 +

23.13

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTA--CAATACCCAAG --------------------------------------------------------------------------------------AGACGGAGGAGGACGATTGACGCGAAGAAACGAGCCGTAGCCAAAGCCTCAA	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
....................................................................................................................GGAGCCGTAGCGAAAGC.....	17	2	0.50	0.00	0.50	0.00	0.00

scaffold_6540:7636897-7636948 +

22.39

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTA-CAATACCCAAG -------------------------------------------------------------------------------------CCAACAATGCGCAGCAGCAACAGCAACAGCAACAGCAGCAGCAACAACAACA	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
......................................................................................GAACAATGCGCTGCAGCA.................................	18	2	0.50	0.00	0.00	0.50	0.00
...........................................................................................ATGCGCAGCAGCAACATCACCAGCA.....................	25	2	0.50	0.50	0.00	0.00	0.00
...............................................................................................GCAGCAGCAACAGCAACAGCAAAAGGAGC.............	29	38	0.03	0.03	0.00	0.00	0.00
.............................................................................................................AACAGCAACAGCAGCAGCAACAA.....	23	40	0.03	0.00	0.03	0.00	0.00
.......................................................................................................................GCAGCAGCAACAACAATA	22	7	0.14	0.14	0.00	0.00	0.00
........................................................................................................................CGGCAGCAACAACAACA	21	3	0.33	0.33	0.00	0.00	0.00

124

scaffold_6359:2145220-2145269 -

19.4

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTA-CAATACCCAAG ---------------------------------------------------------------------------------------AAGCAACAGCAGCATCTGCCGCAGCAGCAACTTCAGCAGCAACAACAGCA	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
..............................................................................................................................GATCAACAGCA	18	10	0.10	0.00	0.00	0.10	0.00

scaffold_6473:7256100-7256139 +

19.19

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

scaffold_6359:3223180-3223222 +

18.66

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTA-CAATACCCAAG
----------------------------------------------------------------------------------------------AGCAACAATTGCAGCAACAGCAACAGCAAAATCAACAGCAACA

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

scaffold_6328:1445230-1445272 +

18.66

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG ---------------------------------------------------------------------------------------------GAGCATCTCGTCGAGCAGCACCAATCGACGGTCTGGACGCGAG	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
..................................................................................................................................CTCGAG	18	7	0.14	0.00	0.14	0.00	0.00
....................................................................................................................................CGAC	18	37	0.03	0.03	0.00	0.00	0.00

scaffold_6500:2420908-2420953 +

17.91

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGT-ACAATACCCAAG -------------------------------------------------------------------------------------------AGCAGCAGCAACAACAACAACAACAGCAGCAGCAGCAGCAGCAACA	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
..................................................................................................GCAACAACAACAACAACAGCA..................	21	42	0.02	0.02	0.00	0.00	0.00
.................................................................................................................ACAGCAGCAGCAGCAGCAGCAACT	28	5	0.20	0.00	0.00	0.00	0.20
......................................................................................................CAACAACAACAACAGCAGCAGCAGCA.........	26	47	0.02	0.00	0.02	0.00	0.00
...............................................................................................................................AGCAGCAACA	20	14	0.07	0.00	0.07	0.00	0.00
..................................................................................................GCAACAACAACAACAACAGCAGCG...............	24	38	0.03	0.00	0.03	0.00	0.00

139

scaffold_6473:11064686-11064728 -

17.16

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGT-ACAATACCCAAG
----------------------------------------------------------------------------------------------AGCAGCAACAGCAGCAGCAGCAACAGCAGCAGCAGCAACAGCA

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

scaffold_6540:24059088-24059130 +

16.69

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGA--GCGACGAGAACGGCCGTACAATACCCAAG --------------------------------------------------------------------------------------------AGAGCATCAAATAAATAACAGCAACAACAACAG--CAATAA-CAAT	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
............................................................................................................AACAGCAACAACAAGAG--CAA........	20	45	0.02	0.00	0.02	0.00	0.00
.........................................................................................................AATATCATCAACAACAACAG--C..........	21	11	0.09	0.09	0.00	0.00	0.00
............................................................................................................AACAGCAACAATAACAG--CCATA......	22	4	0.25	0.25	0.00	0.00	0.00

scaffold_6328:2997134-2997174 +

16.37

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG ------------------------------------------------------------------------------------------GAGCAGCAGCAGCAGCAGCAGCAGCAACA-----ACAGCAACAAGG	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
..............................................................................................................GCAGCAACA-----ACAGCATCAGGG	22	15	0.07	0.07	0.00	0.00	0.00

162

scaffold_6500:2470394-2470431 -

16.31

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

scaffold_6359:2719157-2719196 +

16.17

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG ----------------------------------------------------------------------------------------A---ACGGTAGTGGCAGTGGCAACGGCAACGG-----CAATGGCAATG	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
..............................................................................................GGTAGCGGCAGTGGCAGC........................	18	30	0.03	0.00	0.03	0.00	0.00
...............................................................................................GTAGTGGCAGTGGCAACGGC.....................	20	2	0.50	0.50	0.00	0.00	0.00
............................................................................................................CAATGGCAACGG-----CAATGGCAAT.	22	6	0.17	0.00	0.17	0.00	0.00
..............................................................................................................ACGGTAACGG-----CAATGGCA...	18	23	0.04	0.00	0.00	0.04	0.00
..............................................................................................................AGGGCAACGG-----CACTGGCA...	18	5	0.20	0.00	0.20	0.00	0.00
..............................................................................................................ATGGCAACGG-----CAATGGGA...	18	17	0.06	0.00	0.00	0.06	0.00
.............................................................................................................AACGGCATCGG-----CAACGGCA...	19	30	0.03	0.00	0.03	0.00	0.00
.....................................................................................................................................ACG	21	9	0.11	0.11	0.00	0.00	0.00
..............................................................................................................ACGGCAACGG-----CAGTGGCAACG	21	10	0.10	0.10	0.00	0.00	0.00
........................................................................................A---ACGGAAGTGGCAATGGC...........................	18	7	0.14	0.00	0.14	0.00	0.00

128

scaffold_6473:2953867-2953903 -

15.78

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG ----------------------------------------------------------------------------------------------AGCAGCAGCAGCAGCAACAACAACAGC-----AACATCAACT	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
...............................................................................................................CAACAACAGC-----AAGAGCAACT	21	31	0.10	0.00	0.06	0.00	0.03
.................................................................................................AGCAGCAGCAGCTACAACAAGAGC-----AAC.......	27	27	0.04	0.04	0.00	0.00	0.00
.............................................................................................................AACAACAACAGC-----AGCATCAAGT	22	20	0.05	0.00	0.05	0.00	0.00
...................................................................................................................................CGACG	18	37	0.03	0.03	0.00	0.00	0.00
..............................................................................................................ACAACAACAGC-----AAGAGCAACT	22	14	0.07	0.07	0.00	0.00	0.00

droGri2 - 19 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_15081:2060204-2060318 +

45.87

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTC-TGTGGCAGAAGTCTTGCACCGTTCCAAAA--GAGAGCAGCACGTGGAGCGACGAGAACGGCCGT-ACAATACCCAAG ------------------------GCCGGCGGCCCTGGTTCCGGTGGTGGCG-GCGCTGCTGGAGTGGTAGGAGTCGTCGGCAACACCAACAATAACAACAGCAACAACAACAACAACAGCAGCAGCAACAACAGCAATA	Size	Hit Count	Total Norm	V109 Male body
........................GCGGGCGGCCCGGGTTCC..................................................................................................	18	2	1.00	1.00
...............................................................................................ACAAGAGCAACAACAACCACAA.......................	22	30	0.03	0.03
................................................................................................CAAGAGCAACAACAACCACAACA.....................	23	38	0.03	0.03
...............................................................................................ACAAGAGCAACAACAACCACA........................	21	50	0.02	0.02
............................................................................................ATAAGAGCAGCAACAACAACAACAACA.....................	27	6	0.17	0.17
............................................................................................ATAACAAGAGCAACAACAACCACAACA.....................	27	3	0.33	0.33
............................................................................................ATAACAAGAGCAACAACAACCACAA.......................	25	3	0.33	0.33
.........................................................................................ACAATAAGAACAGCAACAATA..............................	21	7	0.14	0.14
........................................................................................................ACAACAACAACAACAGCAGC................	20	49	0.02	0.02
..............................................................................................AACAAGAGCAACAACAACCACAACA.....................	25	23	0.04	0.04
.................................................................................................AAGAGCAACAACAACCACAACA.....................	22	41	0.02	0.02
................................................................GTGGTGGGTGTCGTCGGC..........................................................	18	2	0.50	0.50

158

scaffold_15245:3916304-3916452 -

45.5

TTTTCGTTTACTTTTTAACCCTCCGCTCGA-GAACGTGGTTTCTTTTGCGACGTGCAATACTCT--------------------------------GTGGCAGAAGTCT-TGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTAC-AATACCCAAG TTTTCGTTTGCAT----------CGATTGTGAAACGTGTTT--GTTTGTAGCGTGCAACACACTTTTTCACTCCCACCCAGCGTGTGTGTGTGTGTGT-GAAAAAGTCTGTGCAACGTTCAGAA-----ACAACACGTCGAACT----CTACGGCCGCAAAAATTCCCAAA	Size	Hit Count	Total Norm	V109 Male body
................................................................................GCGTGCGCGTGTGTGTGT-G.......................................................................	19	13	0.08	0.08
.................................................................................AGTGTGCGTGTGTGTGT-GA......................................................................	19	22	0.05	0.05
...............................................................................ACCGTGTGTGTGTGTGTGC-G.......................................................................	20	5	0.20	0.20
...............................................................................CTCGTGTGTGTGTGTGTGT-........................................................................	19	51	0.02	0.02
.................................................................................CGTGTGTGTGTGTGTGT-GTA.....................................................................	20	32	0.03	0.03
.................................................................................CGTGTGTGTGTGTGTGA-G.......................................................................	18	18	0.06	0.06
...............................................................................AGCGTGxGCGTGTGTGTGT-G.......................................................................	19	6	0.17	0.17
................................................................................GCGTGTATGTGTGTGTGT-GTA.....................................................................	21	33	0.03	0.03
..................................................................................GTGCGTGTGTGTGTGT-GTAAA...................................................................	21	19	0.05	0.05

scaffold_14853:7502494-7502615 +

39.21

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATAC-------TCTGTGGCAGAAGTCTT-GCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG
CCTTCGATGATAT---------------GCGCACACGACTGCATCAGTGCCGCAGCAAGTTCGAGCATCTGGAGGAGGCGAATCGTCGCAATTTCAGTCAGTCGCAGCACTCGATGCGCA-------ACTTCTTCAAGACGCCG

Size

Hit Count

Total Norm

V109
Male body

scaffold_98:39464-39546 -

29.1

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACC--GTTCCAAAAGA---GAGCAGCACGTGGAGCGACGAGAACGGCC---GTACAAT-ACCCAAG T--------------------------------------------------------------GCGGAGGCAGCCATGTGTCCTGCTACAAAGGTTGCCCTAAATATAAGGAGACTCGGGCAAAGCTTCTCTACAACAAACTGCG	Size	Hit Count	Total Norm	V109 Male body
T--------------------------------------------------------------GCGGAGGCAGCCATGTGTCCTGCT..........................................................	25	1	1.00	1.00
........................................................................................................TATAAGGAGGCTCGGGCAAAGCTT.................	24	1	1.00	1.00
............................................................................TGTGTCCTGCTACAAAGGTTGCC..............................................	23	1	1.00	1.00
............................................................................TGTGTCCTGCTACAAAGGTTGCCCCAA..........................................	27	1	1.00	1.00
........................................................................................................TATAAAGAGGCTCGGGCAAAGC...................	22	1	1.00	1.00
............................................................................TGTGTCCTGCTACAAAGGTTGCCCCAAA.........................................	28	1	1.00	1.00
........................................................................................................TATAACGAGGCTCGGGCAAAGCT..................	23	1	1.00	1.00

scaffold_98:34182-34236 -

22.15

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATAC---------CCAAG -----------------------------------------------------------------------------GCATCCTTCCA--------CGGCCTGCAGCGCGACGAGGATCGCCA----AT-CCTAAGTGCGCCAAT	Size	Hit Count	Total Norm	V109 Male body
....................................................................................TCCA--------CGGCCTGCAGCGCGACGAGGA............................	25	2	0.50	0.50
.....................................................................................................TGCAGCGTGACGAGGATCGCCA----AT-CC.............	26	2	0.50	0.50
.....................................................................................................................TCGCCA----AT-CCTAAGTGCGCCAAT	23	1	1.00	1.00

148

scaffold_15126:4217831-4217891 -

21.8

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG
-----------------------------------------------------------------GACAAGTGTCGAGCAGCAGCTCAAGTGCAGTCAGCA--------GAAGACAGAAGCCGAACAGCAATCA--

Size

Hit Count

Total Norm

V109
Male body

scaffold_15203:9689998-9690049 +

19.73

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTAC-AATACCCAAG
------------------------------------------------------------------------------CGCCTTCCTTAACAATGGCGGCACCTT-------GGATGCGGCCACACTAACGCCCAGC

Size

Hit Count

Total Norm

V109
Male body

scaffold_974:52-97 +

18.62

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG -----------------------------------------------------------------------------GCATCTTTCCA--------CGGCCTGCAGCGCGACGAGGATCGCC-----AATCCTAAG	Size	Hit Count	Total Norm	V109 Male body
....................................................................................TCCA--------CGGCCTGCAGCGCGACGAGGA...................	25	2	0.50	0.50
.....................................................................................................TGCAGCGTGACGAGGATCGCC-----AATCC....	26	2	0.50	0.50

123

scaffold_14906:8629020-8629059 -

18.48

Size

Hit Count

Total Norm

V109
Male body

168

scaffold_15245:16378946-16378985 -

18.48

Size

Hit Count

Total Norm

V109
Male body

scaffold_15203:5086975-5087029 +

17.91

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGC----------CGTACAATACCCAAG
-------------------------------------------------------------------------------------------GAGTGCCGTTAGCAAAGCGGCCGAAGCGGCTGCCGGCAGCGAGAAGGTGGCCAAA

Size

Hit Count

Total Norm

V109
Male body

130

scaffold_15081:3772024-3772073 -

17.91

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAG-CAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG --------------------------------------------------------------------------------------CAAACGGAAACTAAAACG-AAATTGACGGAAACAGTTGAGCCAAAGTCAAA	Size	Hit Count	Total Norm	V109 Male body
............................................................................................GAAACTAAAAxG-GAATTGACGGAA....................	23	1	1.00	1.00
.............................................................................................AAACTAAAAxG-GAATTGACG.......................	19	1	1.00	1.00
................................................................................................CTTAAAxG-AAATTGACGGAA....................	19	1	1.00	1.00
...............................................................................................ACTAAAAxG-GAATTGACGGAA....................	20	1	1.00	1.00
.............................................................................................AAACTAAAAxG-GAATTGACGGAA....................	22	1	1.00	1.00

scaffold_15126:2789985-2790014 +

11.94

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATACCCAAG ----------------------------------------------------------------------------------------------------------AGCACCAGCAGCAGCTGCAGCAGCACCAAG	Size	Hit Count	Total Norm	V109 Male body
.................................................................................................................GCAGCAGCTGCAGCGGGAC....	19	30	0.03	0.03

scaffold_14978:106682-106701 +

9.7

TTTTCGTTTACTTTTTAACCCTCCGCTCGAGAACGTGGTTTCTTTTGCGACGTGCAATACTCTGTGGCAGAAGTCTTGCACCGTTCCAAAAGAGAGCAGCACGTGGAGCGACGAGAACGGCCGTACAATAC--CCAAG
----------------------------------------------------------------------------------------------------------------------GGACGTACGCTTCCTCCAAT

Size

Hit Count

Total Norm

V109
Male body

None

scaffold_14853:8376923-8376943 +

8.96

Size

Hit Count

Total Norm

V109
Male body

None

170

scaffold_15252:6952041-6952057 -

8.96

Size

Hit Count

Total Norm

V109
Male body

None

145

scaffold_15121:168225-168244 -

7.46

Size

Hit Count

Total Norm

V109
Male body

None

scaffold_14830:2025694-2025702 +

4.48

Size

Hit Count

Total Norm

V109
Male body

None

140

scaffold_15110:7065601-7065611 -

3.73

Size

Hit Count

Total Norm

V109
Male body

None

Generated: 04/20/2012 at 05:34:55 EDT