dme-mir-4975- 12- and 20-way alignments

dme-mir-4975	chr2R:2594667-2594778 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intron

Legend:

   mature strand at position 2594732-2594752
   star strand at position 2594680-2594706
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chr2R:2594652-2594793 -	TAGAACTGGAAATCTGGGCAAATAA--AGCACG------TTGCTCCCTGTTTACTTG-----------------G------------------------------------------GTTTTCTGTTCATTTCGCCTATCGAACGTTGAACTTAAAAAGCCACGA---------TCAGTTGTTTAACATACAGATATCT-----------CTGT-ACACAAGAAGATTCA
droSim1	chr2R:1414726-1414867 -	TAGAACTGAAAGTCTCGGCAAATAG--AGCACG------TTGCTCCCTGTTTACTCA-----------------G------------------------------------------GTTCCCTGTTCATTTCGCCTATCGAACGTTGAACTTCAAGAGCCACGA---------TCAGTTGGTAAAGATACAGATATCT-----------CTGT-ATACTAGAAGATACA
droSec1	super_1:259050-259190 -	TAGAACTGGAAGTCTCGGCAAATAA--AGCACG------TTGCTCCCTGTTTACTCA-----------------G------------------------------------------GTTCCCTGTTCAGTTCGCCTATCGAACGTTGAACTTCAAGAGCCACGA---------TCAGTTGGT-AGGATACAGATATCT-----------CTGT-ATACTAGAAGATACA
droYak2	chr2L:15337545-15337682 -	TAGAAATGAAAATCTCGGCAAGTAA--AGCACG------TTGCTCCATGTTTACTCA-----------------G------------------------------------------GTTTGCTGTTTATATCGCCTATCAAACGTTGAACTTGAA---TCACGA---------TCAGTTGGTCAACATACATATATTT-------------GTCACACTAGGTGATCCA
droEre2	scaffold_4929:19950710-19950840 +	TAGGACTGCAGATCCCGGCAACTAA--AGCACG------TTGCTCCCAGTTTACTCA-----------------G------------------------------------------GTTCGCTGTTTATATCGCCTATCGAGCGTTGAACTTGAGGAGCCACGA---------TCAGTTGGTCAGCATACATATA-----------------------AAGATGATCCA
droAna3	scaffold_13266:18414790-18414883 +	AAGTCT---------------------------------------------AATTTCGGTGCCTTGTTTACTTCG------------------------------------------CTCTCCG------------------GCGGAGAGCT--GCAGTGCACGAGGTGT----CTAATCGGCCAGCCCATAGAGC-------------------------AATGAACTT
dp4	chr3:859167-859237 -	TAGCACAGAAAATCTCGGCAATCAAAAAACACG------CCGTTT-CTGTTTACGTT-----------------A------------------------------------------CTTCTCGTCCCGTCCCGTCT---------------------------------------------------------------------------------------------
droPer1	super_2:1035040-1035110 -	TAGCACAGAAAATCTCGGCAATCAAAAAACACG------CCGTTT-CTGTTTACGTT-----------------A------------------------------------------CTTCTCGTCCCGTCCCGTCT---------------------------------------------------------------------------------------------
droWil1	scaffold_180698:5584044-5584122 -	TTTGCCTATAAACTTTGAAACAAAA--GTTCTAACGAGCATATTCTAAACATATTTAAATATtttgttttttttt------------------------------------------ttttg--------------t---------------------------------------------------------------------------------------------
droVir3	scaffold_12875:15484862-15485059 -	CTAAACTCTAATCTCATCCAATTGA--AATGCG------CCGCACGTTGTTTACACT-----------------GTCTACACGCATAGtTTtTtTtgTtTtTTTTTtGTtTtTtTttTTttt-----TGCAATCCCTATCGAGCATTGAACTTGGCACAGCTCGCAGCGTTTATTCAACCAATCGAC-AACAAATACGTTGAGTTTTGTGCTCT-CAAGCAGCCGATCCC
droMoj3	Unknown	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	Unknown	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chr2R:2594652-2594793 -	NA	T-AGAACTGGAAATCTGGGCAAATAAAG--CACGTTGCTCCCTGTTTACTTGGGTTTTCTGT-TCAT------------------------------------TTCGCCTATCGAACGTTGAACTTAA------AAAG-----------CCACGATCAGTTGTTTAACAT-----------ACAGATA--------TCTCTGT------AC----ACAAGAAGATTCA------------------------
droSim1	chr2R:1414726-1414867 -	1	T-AGAACTGAAAGTCTCGGCAAATAGAG--CACGTTGCTCCCTGTTTACTCAGGTTCCCTGT-TCAT------------------------------------TTCGCCTATCGAACGTTGAACTTCA------AGAG-----------CCACGATCAGTTGGTAAAGAT-----------ACAGATA--------TCTCTGT------AT----ACTAGAAGATACA------------------------
droSec1	super_1:259050-259190 -	1	T-AGAACTGGAAGTCTCGGCAAATAAAG--CACGTTGCTCCCTGTTTACTCAGGTTCCCTGT-TCAG------------------------------------TTCGCCTATCGAACGTTGAACTTCA------AGAG-----------CCACGATCAGTTGGT-AGGAT-----------ACAGATA--------TCTCTGT------AT----ACTAGAAGATACA------------------------
droYak2	chr2L:15337545-15337682 -	2	T-AGAAATGAAAATCTCGGCAAGTAAAG--CACGTTGCTCCATGTTTACTCAGGTTTGCTGT-TTAT------------------------------------ATCGCCTATCAAACGTTGAACTTGA---------A-----------TCACGATCAGTTGGTCAACAT-----------ACATATA--------TTTGT-C------AC----ACTAGGTGATCCA------------------------
droEre2	scaffold_4929:19950710-19950840 +	1	T-AGGACTGCAGATCCCGGCAACTAAAG--CACGTTGCTCCCAGTTTACTCAGGTTCGCTGT-TTAT------------------------------------ATCGCCTATCGAGCGTTGAACTTGA------GGAG-----------CCACGATCAGTTGGTCAGCAT-----------ACATATA-----------------------------AAGATGATCCA------------------------
droEug1	scf7180000409447:268824-268959 -	2	A--GAACCGGCAAACCGGGCAAATACTG--CACGTATTTAATTCAATGCCCGGATTTTTTGT-TACC---A-GCTGGCATATACGTACATAT--------------ACAAATATAGCATAGAACATGCC----------------------TCAA-----------------------------------T------------TGGTGG--CCATT-----------------------AAAATGCATAAAT
droBia1	scf7180000302292:3556325-3556502 +	1	TCAAAACTGAAAATCTCGCCAATTAAAACAAATGCCGCTCCGTATTTACTCGAGCTCTCTGT-TCA----G-CCCGGAATATACGAGCGTTTTAATCGC----TTCGCCTATCGAACGTTGAACTTGGCCATTCGCAG-----------CCTCAAGCTATTGGCCAACGT-----------GTG--C-ATT-------TGA-T------ACACTTA-TTGTAGATCCA------------------------
droTak1	scf7180000413887:7090-7270 +	1	T-AGAACTGAAAATCTCGGCAAATAAAG--CATGCCGCTCCTTGTTTACTCGACTTCTCTGTTCGGTTTAG-CCTGCAATATACGAGCGTTTTAATCAC----CTCGCCTATCGAACGTTGAACTTGGCCATTCGCAG-----------GCACATTCT------------GTATTTACTGAATA--T-ACT------------TGATAG--CTTCC-----------------------TTGATGATTAGAG
droEle1	scf7180000491217:416541-416721 +	1	T-AAAACTGAAAATCTCGGAAAATAAAA--CACGCCGTTTACTGTTTACTTAGGCTCTCTGC-TAA----G-CGTGCAATACACGAGTATTTTAATCGC----TTCGCTTATCGATCGTTGAACTTGTCCGTTTACAA-----------CCACGTTCACTTGGTCT-------------------------------------------TT----ATTGGATGTTCCATTCAGAAGGTGGACTCGAGCGTCC
droRho1	scf7180000766409:482949-483059 -	1	T-AAAACTGAAAATCTCGGCAATTAAAG--CTCAG-------------------------------------CGTGCAATATACGAGCATTATAATCTC----TTCCCCTATCGAACGTTGAACTTGGCCGTTCACAA-----------CCACGTTGATATAG--------------------------------------------------------------TCT------------------------
droFic1	scf7180000453955:706562-706716 +	1	T-AGAACTGAAAATCTCAGCAAATACAG--CCCGTCGCTCCTTGTTTACTTGGGTTCTCTGT-TAA----G-CCCGCGGTATACGATCGTTTTAATCAC----TTCGCCTATCGAACGTTGAACTTGGC-----------------------CGATCAGTTGGTCAATGTGCACTTAGC--ACAGATC--------T---------------------------GTCA------------------------
droKik1	scf7180000302470:157289-157421 -	1	T-----CTGAAAATCTCGGCACTCACT----------------TTCCACA------------------------TGAAATGT----ACATTTTAATCA----------GTGTCGTACGTTGGTGATAT------TGCCCCCCATTCAAGTCTTA-------AAT-CAAAT-----------ACAAATTATTTGGCCTCCCTC-------TT----ACGAGATCCTGCA------------------------
droAna3	scaffold_13266:18414789-18414883 +	1	A-AGTCT----AATTTCGGT------------------GCCTTGTTTACTTCGCTCTCCGGC-GGA----GAGCTGCAGTGCACGAGGTGTCTAATCGG----CCAGCCCATAGAGCAATGAACTT------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000396735:1686720-1686820 +	1	T-GGAAGTGG-AATCTCAGT------------------GCCTTGTTTACTTGG-TTCTCCGC-CGG--A-GAGCTGCAGTGCACGAGGTTTCTAATCGCGTGGTCGGTCTATCGAGCAATGAACTT------------------------------------------------------------------------------------------------------------------------------
dp4	chr3:859167-859237 -	2	T-AGCACAGAAAATCTCGGCAATCAAAAAACACGCCGTTTC-TGTTTACGTTACTTCTCGTC-CCGT------------------------------------CCCGTCT----------------------------------------------------------------------------------------------------------------------------------------------
droPer1	super_2:1035040-1035110 -	2	T-AGCACAGAAAATCTCGGCAATCAAAAAACACGCCGTTTC-TGTTTACGTTACTTCTCGTC-CCGT------------------------------------CCCGTCT----------------------------------------------------------------------------------------------------------------------------------------------
droWil1	Unknown	NA	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3	Unknown	NA	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	Unknown	NA	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	Unknown	NA	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

TAGAACTGGAAATCTGGGCAAATAA--AGCACG------TTGCTCCCTGTTTACTTG-----------------G------------------------------------------GTTTTCTGTTCATTTCGCCTATCGAACGTTGAACTTAAAAAGCCACGA---------TCAGTTGTTTAACATACAGATATCT-----------CTGT-ACACAAGAAGATTCA

Size

Hit Count

Total Norm

droSim1

TAGAACTGAAAGTCTCGGCAAATAG--AGCACG------TTGCTCCCTGTTTACTCA-----------------G------------------------------------------GTTCCCTGTTCATTTCGCCTATCGAACGTTGAACTTCAAGAGCCACGA---------TCAGTTGGTAAAGATACAGATATCT-----------CTGT-ATACTAGAAGATACA	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
.....CGGAAAATCTCGGCAAAT...............................................................................................................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00

droSec1

TAGAACTGGAAGTCTCGGCAAATAA--AGCACG------TTGCTCCCTGTTTACTCA-----------------G------------------------------------------GTTCCCTGTTCAGTTCGCCTATCGAACGTTGAACTTCAAGAGCCACGA---------TCAGTTGGT-AGGATACAGATATCT-----------CTGT-ATACTAGAAGATACA	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
.........................................................................................................................................................CAAGAGCGACGA---------TCAGCT..................................................	18	1	1.00	0.00	1.00	0.00
................................................................................................................................................GTTGAACTTCAAGAGCCACGA---------TCA.....................................................	24	1	1.00	0.00	1.00	0.00

droYak2

TAGAAATGAAAATCTCGGCAAGTAA--AGCACG------TTGCTCCATGTTTACTCA-----------------G------------------------------------------GTTTGCTGTTTATATCGCCTATCAAACGTTGAACTTGAA---TCACGA---------TCAGTTGGTCAACATACATATATTT-------------GTCACACTAGGTGATCCA	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.....................GTAA--AGxACG------TTGCTCCATGC....................................................................................................................................................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
................................................GTTTACTCA-----------------G------------------------------------------GATAGCTG.........................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00

droEre2

TAGGACTGCAGATCCCGGCAACTAA--AGCACG------TTGCTCCCAGTTTACTCA-----------------G------------------------------------------GTTCGCTGTTTATATCGCCTATCGAGCGTTGAACTTGAGGAGCCACGA---------TCAGTTGGTCAGCATACATATA-----------------------AAGATGATCCA

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

droAna3

AAGTCT---------------------------------------------AATTTCGGTGCCTTGTTTACTTCG------------------------------------------CTCTCCG------------------GCGGAGAGCT--GCAGTGCACGAGGTGT----CTAATCGGCCAGCCCATAGAGC-------------------------AATGAACTT

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

dp4

TAGCACAGAAAATCTCGGCAATCAAAAAACACG------CCGTTT-CTGTTTACGTT-----------------A------------------------------------------CTTCTCGTCCCGTCCCGTCT---------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

droPer1

TAGCACAGAAAATCTCGGCAATCAAAAAACACG------CCGTTT-CTGTTTACGTT-----------------A------------------------------------------CTTCTCGTCCCGTCCCGTCT---------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
...............................................TGATTACGTT-----------------A------------------------------------------CTTCTCTT.........................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00	0.00

droWil1

TTTGCCTATAAACTTTGAAACAAAA--GTTCTAACGAGCATATTCTAAACATATTTAAATATtttgttttttttt------------------------------------------ttttg--------------t---------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
............................................................ATTTTGGTTTTTTTT------------------------------------------TGT..............................................................................................................	18	3	0.67	0.00	0.67	0.00	0.00
........................................................GAATGTTTTGTTTTTTTTT------------------------------------------T................................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
....................AAAAA--GTTCTAACGTGCA..............................................................................................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
............................................................AATTTTTTTTTTTTT------------------------------------------TTT..............................................................................................................	18	48	0.02	0.00	0.02	0.00	0.00
....................AAAAA--GTTCTGACGAGCA..............................................................................................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
..................................................................TGTTTTTTT------------------------------------------TTTTG--------------G---------------------------------------------------------------------------------------------	18	3	0.33	0.00	0.00	0.00	0.33
...........................................................TATTTTGTTTTTTTTT------------------------------------------GCT..............................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
..............................................................TTTGTTTTTTTTG------------------------------------------TTTTT--------------..............................................................................................	18	51	0.02	0.00	0.02	0.00	0.00
..............................................................TATGTTGTTTTTT------------------------------------------TTTTG--------------..............................................................................................	18	2	0.50	0.00	0.50	0.00	0.00
..........................................................ATATTTTGTTTGTTTTG------------------------------------------TT...............................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
............................................................ATTTTTTTTTTTTTT------------------------------------------TTT..............................................................................................................	18	36	0.03	0.00	0.00	0.00	0.03
.........................................................ATTATTTTGGTTTTTTTT------------------------------------------.................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
.........................................................AATTTTTTTTTTTTTTTT------------------------------------------.................................................................................................................	18	48	0.02	0.00	0.02	0.00	0.00
............................................................ATTTTGTTTTTTGTT------------------------------------------TTTTC--------------..............................................................................................	20	5	0.20	0.00	0.20	0.00	0.00
...............................................................TTCTTTTTTTTT------------------------------------------TTTTG--------------T---------------------------------------------------------------------------------------------	18	49	0.02	0.00	0.02	0.00	0.00
.............................................................TTTTCTTTTTTTTT------------------------------------------TTTT.............................................................................................................	18	32	0.03	0.00	0.00	0.03	0.00
..............................................................TTTGTTTTTTGTT------------------------------------------TTTGG--------------T---------------------------------------------------------------------------------------------	19	7	0.14	0.00	0.14	0.00	0.00
............................................................ATTTTTTTTTTTTTT------------------------------------------TTTT.............................................................................................................	19	31	0.03	0.00	0.03	0.00	0.00
..................................................ATATTGAAATATTTTGTA..................................................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
...........................................................AATTTTTTTTTTTTTT------------------------------------------TT...............................................................................................................	18	48	0.02	0.00	0.02	0.00	0.00
.............................................................TTTTGATTTTTTTT------------------------------------------TTTCG--------------T---------------------------------------------------------------------------------------------	20	1	1.00	0.00	1.00	0.00	0.00
.................................................CATxTTAAAATATTTTGTTTT................................................................................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
...........................................................TATGTTGTTTTTTTTT------------------------------------------TG...............................................................................................................	18	2	0.50	0.00	0.50	0.00	0.00
...................................................TATTTAAATTTTTTTTTTTTTTTT------------------------------------------T................................................................................................................	25	2	0.50	0.00	0.50	0.00	0.00

droVir3

CTAAACTCTAATCTCATCCAATTGA--AATGCG------CCGCACGTTGTTTACACT-----------------GTCTACACGCATAGtTTtTtTtgTtTtTTTTTtGTtTtTtTttTTttt-----TGCAATCCCTATCGAGCATTGAACTTGGCACAGCTCGCAGCGTTTATTCAACCAATCGAC-AACAAATACGTTGAGTTTTGTGCTCT-CAAGCAGCCGATCCC	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.................................................................................................TTTTTTTTTTTTTTTTTTTTT................................................................................................................	21	47	0.13	0.02	0.00	0.00	0.02	0.09
..................................................................................................TTTTTTTTTTTTTTTTTTTTT...............................................................................................................	21	47	0.13	0.02	0.00	0.00	0.02	0.09
.....................................................................................................TTTTTTTTTTTTTTTTTTTTT-----.......................................................................................................	21	47	0.13	0.02	0.00	0.00	0.02	0.09
...................................................................................................TTTTTTTTTTTTTTTTTTTTT..............................................................................................................	21	47	0.13	0.02	0.00	0.00	0.02	0.09
....................................................................................................TTTTTTTTTTTTTTTTTTTTT.............................................................................................................	21	47	0.13	0.02	0.00	0.00	0.02	0.09
......................................................................................................TTTTTTTTTTTTTTTTTTTT-----T......................................................................................................	21	47	0.13	0.02	0.00	0.00	0.02	0.09
....................................................................................................TTTTTTTTTTTTTTTTTTTTTT-----.......................................................................................................	22	41	0.05	0.00	0.00	0.02	0.00	0.02
...................................................................................................TTTTTTTTTTTTTTTTTTTTTT.............................................................................................................	22	41	0.05	0.00	0.00	0.02	0.00	0.02
.....................................................................................................TTTTTTTTTTTTTTTTTTTTT-----T......................................................................................................	22	41	0.05	0.00	0.00	0.02	0.00	0.02
..................................................................................................TTTTTTTTTTTTTTTTTTTTTT..............................................................................................................	22	41	0.05	0.00	0.00	0.02	0.00	0.02
.................................................................................................TTTTTTTTTTTTTTTTTTTTTT...............................................................................................................	22	41	0.05	0.00	0.00	0.02	0.00	0.02
.................................................................................................ATTTTTTTTTTTTTTTTTTTTT...............................................................................................................	22	51	0.02	0.00	0.00	0.02	0.00	0.00
....................................................................................................TTGTTTTGTTTTGTTTTTTT..............................................................................................................	20	7	0.14	0.14	0.00	0.00	0.00	0.00
.........................................................................................TTTTTTTGTTTTTGGTTTGT.........................................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
.....................................................................................................TCTTTTGTTTTCTTTTTTTTT-----T......................................................................................................	22	4	0.25	0.00	0.25	0.00	0.00	0.00
....................................................................................................TTTTGTTGTTTTTTTGTTTTT.............................................................................................................	21	5	0.20	0.20	0.00	0.00	0.00	0.00
.................................................................................................TTTTTTTTTCGTTTTTTTGTT................................................................................................................	21	1	1.00	0.00	0.00	0.00	0.00	1.00
..............................................................................................TTGTTTTGTTTTTGTTTTTGT...................................................................................................................	21	2	0.50	0.50	0.00	0.00	0.00	0.00
.................................................................................................TTTTGTTTTTGTTGTTTTTTT................................................................................................................	21	3	0.33	0.00	0.33	0.00	0.00	0.00
.....................................................................................TAGTTGTTGTTGTTTTTTTT.............................................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
......................................................................................AATTTTTTTGGTTTTTTTTTT...........................................................................................................................	21	2	0.50	0.50	0.00	0.00	0.00	0.00
....................................................................................................ATTTTTTTTTTTTTTTTTTTTT-----.......................................................................................................	22	51	0.02	0.00	0.00	0.02	0.00	0.00
.........................................................................................GTTGTTTGTTTTTTTTTTGT.........................................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00	0.00
....................................................................................................TTTTTTTTTTTTTTTTTTTTTT-----T......................................................................................................	23	36	0.03	0.03	0.00	0.00	0.00	0.00
...................................................................................................TTTTTTTTGTTTGTTTTTTGT..............................................................................................................	21	4	0.25	0.25	0.00	0.00	0.00	0.00
...................................................................................................TTTTTTTTGTTTTTTTTCAT...............................................................................................................	20	3	0.33	0.33	0.00	0.00	0.00	0.00
..................................................................................................TTTTTTTTTTTTTTTTTTTTTTT.............................................................................................................	23	36	0.03	0.03	0.00	0.00	0.00	0.00
....................................................................................................TATTTTTTTTTTTTTTTTTTTT-----T......................................................................................................	23	44	0.02	0.02	0.00	0.00	0.00	0.00
.....................................................................................................ATTTTTTTTTTTTTTTTTTTT-----T......................................................................................................	22	51	0.02	0.00	0.00	0.02	0.00	0.00
.................................................................................................TATTTTTTTTTTTTTTTTTTTTT..............................................................................................................	23	44	0.02	0.02	0.00	0.00	0.00	0.00
..................................................................................................ATTTTTTTTTTTTTTTTTTTTT..............................................................................................................	22	51	0.02	0.00	0.00	0.02	0.00	0.00
.................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTT-----T......................................................................................................	26	25	0.04	0.00	0.00	0.04	0.00	0.00
........................................................................................TTTTTTTTGTTTGTTTTTTGT.........................................................................................................................	21	4	0.25	0.25	0.00	0.00	0.00	0.00
...................................................................................................ATTTTTTTTTTTTTTTTTTTTT.............................................................................................................	22	51	0.02	0.00	0.00	0.02	0.00	0.00
.................................................................................................TTTTTTTTTCGTTTTTTTGT.................................................................................................................	20	3	0.33	0.33	0.00	0.00	0.00	0.00
................................................................................................ATTTTTTTTTTTTTTTTTTTTT................................................................................................................	22	51	0.02	0.00	0.00	0.02	0.00	0.00
..............................................................................................TTTTTTTTTTTTCGTTTTTTT...................................................................................................................	21	22	0.05	0.05	0.00	0.00	0.00	0.00
...............................................................................................TATTTTTTTTTTTTTTTTTTTTT................................................................................................................	23	44	0.02	0.02	0.00	0.00	0.00	0.00
...................................................................................................TATTTTTTTTTTTTTTTTTTTTT-----.......................................................................................................	23	44	0.02	0.02	0.00	0.00	0.00	0.00
...............................................................................................TGTTTTCTTTATGTTTTTT....................................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
.................................................................................................TTTTTTTTTTGTTGTTGTTT.................................................................................................................	20	2	0.50	0.50	0.00	0.00	0.00	0.00
........................................................................................................TTAGCTTTTTTTTTTTTT-----.......................................................................................................	18	7	0.14	0.00	0.00	0.14	0.00	0.00
...............................................................................................................TTTTTTTTTTT-----TACGATC................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00	0.00
...................................................................................................TTTTTTTTTTTTTTTTTTTTTTT-----.......................................................................................................	23	36	0.03	0.03	0.00	0.00	0.00	0.00
..................................................................................................TATTTTTTTTTTTTTTTTTTTTT.............................................................................................................	23	44	0.02	0.02	0.00	0.00	0.00	0.00
............................................................................................TTTTGTTGTTTTTTTGTTTTT.....................................................................................................................	21	5	0.20	0.20	0.00	0.00	0.00	0.00
......................................................................................ACTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTT-----.......................................................................................................	36	1	1.00	0.00	0.00	1.00	0.00	0.00
.................................................................................................TTTTTTTTTTTTTTTTTTTTTTT..............................................................................................................	23	36	0.03	0.03	0.00	0.00	0.00	0.00
........................................................................................TTGTTTTTGTTTTTTGTTTGT.........................................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
..........................................................................................TTTTTTGTTTTTGGTTTGT.........................................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00

droMoj3

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

droGri2

Size

Hit Count

Total Norm

V109
Male body

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image											None	None
UNAFold Image											None	None

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image																	None	None	None	None
UNAFold Image																	None	None	None	None