dme-mir-4974- 12- and 20-way alignments

dme-mir-4974	chr2L:21263932-21264034 +	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intron

Legend:

   mature strand at position 21263992-21264013
   star strand at position 21263955-21263976
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chr2L:21263917-21264049 +	GCATTGACTTCTTTTGTTCTT---TG------TTTTTATTC---------------------CCTGTCAGAGAGTATATTGATTT------------------------------------TAGGTGGAC-----ATTTGCGACCATATAAAATATA------TA----------------TATTCCTGAT----------AAAGAATATTTAATAT---------------------------------------------------------------------ATCTTCTTTTT----------CGGT------ATAC
droSim1	chr2L:20861453-20861585 +	GCACTGACTTCTTTTGTTCTT---TG------TTTTTATTC---------------------CCTAGCAGAGAGTATATTGATTT------------------------------------TAGGCGGTC-----ATTTGCGACCATATAAAGTATA------CA----------------TATTCCTGAT----------CAGAACTATTTAATAT---------------------------------------------------------------------ATCTTTTTTTT----------CGGT------ACAC
droSec1	super_18:1195266-1195398 +	GCACTGACTTCTTTTGTTCTT---TG------TTTTTATTC---------------------CCTAGCAGAGAGTATATTGATTT------------------------------------Taggcggtc-----atttgcgaccatataaagtata------ca----------------tattcctgat----------cagAACTATTTAATAT---------------------------------------------------------------------ATCTTTTTTTT----------CGGT------ATAC
droYak2	chr2R:1507037-1507180 -	GTACTGACTTCTTTCGTTCTT---TG------TTTTTATTT---------------------CCTTGTAGAGGGTATATTGATTT------------------------------------CTGTCAGAC-----ATTTGCGCCCATAGAATTTATA------C-----------------------------------------------------------------------------TATGTATATATTTGTG----ATCGGTATTAACAGCCAAGTCAAAAGACATTTCTAT----------T-G--------CAA
droEre2	scaffold_4845:3233329-3233455 -	GTACTGGCTTCTTTTGTTCTT---TG------TTTTTATTC---------------------CCTTGCAGAGGGTATATTGAT-T------------------------------------CAGTCagac-----at-tgcgaccacataaagtata------t-------------agtatattcctgat----------cag--------------------------------------------------------------cattaaccgccga-------gtcgTTTCCCT----------T-------------
droAna3	scaffold_13266:19137925-19137984 -	tcc----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tgat----------caagaatatataacgtatgtacataccataaactttatagg------------------------g---------------------------ATT----------GCGG------AGAC
dp4	chr4_group4:3359595-3359674 -	ATT---------------------------------------------------------------------------------------------------------------------------------------AAAAATCATACAAAAAAGATATGAACAAATTTTTGATATAGCA----------------------AAAT--------------------------------------------------CGTAATCAAGTTT----------------ATCCCCTTCTT----------CAGG------CT--
droPer1	super_10:2379453-2379542 -	CCGTTCGCCTTTTTGGTTCTTTATTG------TTTTTATAC---------------------CCTTCTAGAGAGTATTATGATTT------------------------------------TAATAAGTT-----ATTAAAAATCATACAAAAAAGATATGAACAAATTTTTGATATAGCA----------------------AAAT--------------------------------------------------CGTAATCAAGTTT----------------ATCCCCTTCTT----------CAGG------CT--
droWil1	scaffold_181071:739019-739142 +	TCATCGTTTGGGCCAGTTTTC---TGTGTCAGTTGTCAATT---------------------TTTTTTATGAAATTTT-TTATTTTGGGCTGTAATGA--------------------------------CAAATATTTGCTGA--------------------------------------TTTAATTGT----------AATGGATAATTGCAGT---------------------------------------------------------------------GTCTTCATTTT----------TACT------AA--
droVir3	Unknown	TTTTTT-------------------T------TTGTTAGCTTAATGGAAATCTGCTTGAGCGCAATGCAGAAAATGCATAAGC-T----------------------------------------------------------------AAAGTAAG------CA----------------TTTCCCTCGTCTAGTGAAACAAAAAGTATTCTATTA---------------------------------------------------------------------ACCATATTTTGCCGGAAATAGT-TTAAACACAAAG
droMoj3	Unknown	GGTTTCAGTTCTTTTGTTTTT---TT------TTGATATCCCAAATGTGAAGTGCTA------------AAGAGTTGA--AATTC-------------GGAATGTAGATTGGCATTGAGTTCAATAAGAT-----AT---------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGGATATATT-GTATA---CA--
droGri2	Unknown	CGATTGGTTTCTTTA-----------------------TG----------------------Ctatacata-----------------------------------------------------------cacatatatatatttatata-----ta------ta----------------tatatatatTTTAG------------------------------------------------------------------------TTTTACATATGATT-----TTGTTGTTTTT----------CTTT------TTAC

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chr2L:21263917-21264049 +	NA	GCATTGA----CTTCTTTTGTTCT---TTGTTTTTATTCCCTGTCAG--AGAGTATATTGATTTTAGGTG-----------------------GACAT-TTGCGACCATATAAAATAT-ATATATTCCTGATAAAGAATATTTAATATATCTTCTTTT--------------------------------TCGGTATAC
droSim1	chr2L:20861453-20861585 +	4	GCACTGA----CTTCTTTTGTTCT---TTGTTTTTATTCCCTAGCAG--AGAGTATATTGATTTTAGGCG-----------------------GTCAT-TTGCGACCATATAAAGTAT-ACATATTCCTGATCAGAACTATTTAATATATCTTTTTTT--------------------------------TCGGTACAC
droSec1	super_18:1195266-1195398 +	9	GCACTGA----CTTCTTTTGTTCT---TTGTTTTTATTCCCTAGCAG--AGAGTATATTGATTTTAGGCG-----------------------GTCAT-TTGCGACCATATAAAGTAT-ACATATTCCTGATCAGAACTATTTAATATATCTTTTTTT--------------------------------TCGGTATAC
droYak2	chrU:19793626-19793766 +	7	GAACTTA----ATTATATCGTTCT----CTCTCTTACACCCTTAAAG--AGGGTGTATTGATTTTAACCGGAAA-----AACGCAAAAAAGGAGACAT-TTGCGGCCATATAAAGTAA-ATATATTCTTAATCAGTATCAAC------------------------------GTCAGTT-----------TTAAGATCC
droEre2	scaffold_4784:24793627-24793751 +	9	TAATTGA----ATTTCTTTGGTTT----TTTTACCATTTACTTTTAG--AGAATATACTAGAATTTCTGAGAAGTGTGTAACAGGCAGAAGGAAACGT-TTTCGACCATATAAATTAT-ATATATTCTTGATCAGGA--------------------------------------------------------------
droEug1	scf7180000409122:862766-862897 -	5	------------------------------TTTTTATACCCTTGCAA--AGTTTGTAACGCAG-----------------------TGAAGGAGACGT-TTCCGAACCCATAAAGTAT-ATATATTCTTGATCAGGATCAATAGGGGAGTATATATAG----C------CATGTCCGTCTGTTTCATCTCTGTCTATAT
droBia1	scf7180000301268:374-502 -	371	TTAT-----------------------CCCTTTTTATACCCTTGCAG--AGGTTATAATGATTTGAAG------------------TGAAGGAGACGT-TTCCGACCCCATAAAGTAT-ATATATTCTTGATCAGCGTCACTAGACGATTCCACCTAG----C------CATGTTCGTC---------------TGTCC
droTak1	scf7180000411086:12009-12140 +	39	ACGTAAA----AGTCAGTTCTTGT---CTATTTTTATAACCTTGCAG--AGGGTATTATGATTTTAGTAAGA-----------------------AGT-TTGCAACCCTATAAAGTAT-AAATGTTCTTGATCAGCATCACTAGACGAGTCGATCTAA----C-----------------------------CATGTCC
droEle1	scf7180000490489:41546-41679 -	901	ATTAC-------TTCC---TATTT---ATTTTTTTATATTATTGCAG--AGGGTATTATGATTTCAGTCAGA-----------------------AGT-TTGCGACCCTGTAAAGTAT-ATATATTCTTGATCAGCATCACTAGGAGAGTCGATCTAG----C------CATGTCCGTC---------------TGTCC
droRho1	scf7180000780205:9144-9271 -	2074	TTG---A----GGTATTTTAT-TT---TTGTTTTTATACCCTTGCAG--AGGGTATTATAATTTTGGTCAAAAGTGTGCAACGCAGTGAAGGAGACAT-CTCCGACCATATAAAGTAT-ATATATTCTTGATCAGGATCACCT--------------------------------------------------------
droFic1	scf7180000451789:400159-400291 -	168	AATTCAACTTAAGA-ACTCGTTTC---ATGTTTTTATACCCTTGCAG--AGCATATATTATTTTTAGTTGGAAGTTTGAAACTCAGTAAAGGAGACTTACTCCGAAAACTGTAAAAAT-ATATATTCTTAAGAAAGGTAA-----------------------------------------------------------
droKik1	scf7180000302373:155872-155996 +	40	------------------------------TTTTTATACCCTTGCAG----GGTATTATAAGT---------------------------GGAGACGT-TTCCGACCCTATAAAGTAT-ATATATTCTTGATCATATAAAATTATAACTTGGCTGTTTTTCAATATTTTTGCATCTTTT-----------TTGAGATAT
droAna3	scaffold_13499:388035-388162 -	1503	TTAT--------TTCCTTTGTTCT---TCGTTTTTATACCCTTGCAG--AGGGTATTATAATTTTGGTCAAAAGTGTGCAACGCAGAGAAGGAGACAT-CTCCGACCCTATAAAGTAT-ATATATTCTTGATCAGGATCACCT--------------------------------------------------------
droBip1	scf7180000392227:732-861 +	80	A--TTTA----GTTTTGTTGTTCT---TGTTTTTTATACCCTTGCAG--AGGGTATTATAATTTTGGTCAGAAGTGTGCAACGCAGTAAAGGAGACAT-CTCCGACCCTATAAAGTAT-ATATATTCTTGATCAGGATCACCT--------------------------------------------------------
dp4	chr2:13223937-13224089 -	1	CCGTTCG----CCTTTTTGGTTCTTTATTGTTTTTATACCCTTCTAG--AGAGTATTACGATTTTGGGCTAATGTCTGCAAGACTGGA-ACCTGCAAC-ATAGAATCCCATAGGGTATTATATAT-----ATGAGGATCGGTAGCCATCTCTC------------------------TT---------TTTCTATACAC
droPer1	super_0:7229185-7229317 +	1	CCGTTCG----CCTTTTTGGTTCTTTATTGTTTTTATACCCTTCTAG--AGAGTATTATGATTTTGGGCTGCTGTCTGCAAGGCTGAAATC-TATTGC-ATAGAATCCTATAGGGTATTATATAT-----GTCAGGATCGG-----------------------------------------------------TAGCC
droWil1	scaffold_181150:776667-776791 -	218	TT------------TTTTTGATTT---TCTTTTTTATAACCTTGCAAAAAGGGTATATTCATTTTGGTCAAAGGAA-----------------TGCAT-CTCCGACCATGTAAATTAT-ATATATTCTTGATTAGCACGACGAGACGAGTTCATATAG----C------------------------------------
droVir3	scaffold_12963:16876342-16876466 -	17	GAACTCG----TTTCTGGTGTACGT-CGTGTTTTTATACCCTTGTAG--AGAGTATTTTAATTTTGTCGTGGAATGTGCAACGCATGGATGGAGACAT-TTGGGACCCCATAAAGTAT-ATGTATTCTAGATAA-----------------------------------------------------------------
droMoj3	Unknown	NA	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_3049:4191-4318 -	3	ATTGACA----A---ATTTATTTT---TAATTCTTCTTTTGTTCGAG--TGGGTATAACAGGTA-----------------------GAAGGAAGCAT-CTCCGACGCCATAAAGTAT-ATATGTTTCTGAGAAGGATCAATTGAGGAGTCGATGTAG--------------------------------TTC---GTC

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

GCATTGACTTCTTTTGTTCTT---TG------TTTTTATTC---------------------CCTGTCAGAGAGTATATTGATTT------------------------------------TAGGTGGAC-----ATTTGCGACCATATAAAATATA------TA----------------TATTCCTGAT----------AAAGAATATTTAATAT---------------------------------------------------------------------ATCTTCTTTTT----------CGGT------ATAC

Size

Hit Count

Total Norm

droSim1

GCACTGACTTCTTTTGTTCTT---TG------TTTTTATTC---------------------CCTAGCAGAGAGTATATTGATTT------------------------------------TAGGCGGTC-----ATTTGCGACCATATAAAGTATA------CA----------------TATTCCTGAT----------CAGAACTATTTAATAT---------------------------------------------------------------------ATCTTTTTTTT----------CGGT------ACAC	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
........................................................................................................................................................GTATA------TA----------------TATTCTTGAT----------C.......................................................................................................................	18	1	3.00	0.00	0.00	0.00	3.00
..........................................................................................................................................................ATA------TA----------------TATTCTTGAT----------CAG.....................................................................................................................	18	1	2.00	0.00	2.00	0.00	0.00
.......................................................................................................................................GTTTGCGACCATATAAAGT.......................................................................................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00
.........................................................................................................................................TTCGGACCATATAAAGTA......................................................................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
.........................................................................GTATATTGATTT------------------------------------TAGGCGGT................................................................................................................................................................................................	20	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................................................TATAAAGTATA------CA----------------TATTCTTGAT----------CAGGA...................................................................................................................	28	1	1.00	0.00	0.00	0.00	1.00
........................................................................................................................................................GTATA------TA----------------TATTCTTGAT----------CAGAA...................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
.........................................................................GTATATTGATTT------------------------------------TAGGCGGTC-----T.........................................................................................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................................................................AAATGATA------CA----------------TATTCCTG....................................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
.....................................................................................................................................................................................................................TTAT---------------------------------------------------------------------ATCTTTTTGTT----------CGGT------....	19	1	1.00	0.00	0.00	1.00	0.00
.........................................................................GTATATTGATTT------------------------------------TAGGCGGTC-----..........................................................................................................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00

droSec1

GCACTGACTTCTTTTGTTCTT---TG------TTTTTATTC---------------------CCTAGCAGAGAGTATATTGATTT------------------------------------Taggcggtc-----atttgcgaccatataaagtata------ca----------------tattcctgat----------cagAACTATTTAATAT---------------------------------------------------------------------ATCTTTTTTTT----------CGGT------ATAC	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
.................................................................TGCAGAGAxTATATTGATT.............................................................................................................................................................................................................................................	18	1	1.00	0.00	1.00	0.00
.......................................................................................................................................GTTTCCGACCATATAAAGT.......................................................................................................................................................................	19	1	1.00	0.00	1.00	0.00

droYak2

GTACTGACTTCTTTCGTTCTT---TG------TTTTTATTT---------------------CCTTGTAGAGGGTATATTGATTT------------------------------------CTGTCAGAC-----ATTTGCGCCCATAGAATTTATA------C-----------------------------------------------------------------------------TATGTATATATTTGTG----ATCGGTATTAACAGCCAAGTCAAAAGACATTTCTAT----------T-G--------CAA	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.................................................................................................................................................TTAGAATTTATA------x-----------------------------------------------------------------------------TATGTA..........................................................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
.........................................................................................................................................................................................................................................................TATTTGTG----ATCGGTATTAAC................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
...........TATCGTTxTT---TG------TTTTTATT.........................................................................................................................................................................................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00	0.00
...............GTGCTT---TT------TTTTTATTT---------------------C..................................................................................................................................................................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00	0.00
......................................................................................................................................................................................................................................................ATATATTTGTG----ATCCGTATA...................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
..........................................................................................................................................................................................................................................................ATTTGTG----ATCGGTATTAACAGCCAAGT........................................	27	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................................GTGGAGGGAATATTGATTT------------------------------------........................................................................................................................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00	0.00
..................................................................................................................................................TAGAATTTATA------x-----------------------------------------------------------------------------TATGTAA.........................................................................	18	1	1.00	1.00	0.00	0.00	0.00	0.00
..........................................................................................................................................................ATA------C-----------------------------------------------------------------------------TATGTATATATTTGTG----ATCGGT......................................................	26	1	1.00	0.00	0.00	1.00	0.00	0.00

droEre2

GTACTGGCTTCTTTTGTTCTT---TG------TTTTTATTC---------------------CCTTGCAGAGGGTATATTGAT-T------------------------------------CAGTCagac-----at-tgcgaccacataaagtata------t-------------agtatattcctgat----------cag--------------------------------------------------------------cattaaccgccga-------gtcgTTTCCCT----------T-------------	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
...................TT---TG------TTTTTATTC---------------------CATTGCAGAG.........................................................................................................................................................................................................................................................	23	1	1.00	0.00	0.00	0.00	1.00
.......................................................................................................................................................AGTAAA------T-------------AGTGTATTCCT.....................................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00

droAna3

tcc----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tgat----------caagaatatataacgtatgtacataccataaactttatagg------------------------g---------------------------ATT----------GCGG------AGAC	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
..................................................................................................................................................................................................................ATAACGTGTGTACATC...............................................................................................	16	1	1.00	0.00	0.00	1.00	0.00
............................................................................................................................................................................................................................................TxTGGG------------------------C---------------------------ATT----------GCGG------AGAC	17	1	1.00	0.00	0.00	1.00	0.00

dp4

ATT---------------------------------------------------------------------------------------------------------------------------------------AAAAATCATACAAAAAAGATATGAACAAATTTTTGATATAGCA----------------------AAAT--------------------------------------------------CGTAATCAAGTTT----------------ATCCCCTTCTT----------CAGG------CT--

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

droPer1

CCGTTCGCCTTTTTGGTTCTTTATTG------TTTTTATAC---------------------CCTTCTAGAGAGTATTATGATTT------------------------------------TAATAAGTT-----ATTAAAAATCATACAAAAAAGATATGAACAAATTTTTGATATAGCA----------------------AAAT--------------------------------------------------CGTAATCAAGTTT----------------ATCCCCTTCTT----------CAGG------CT--

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

droWil1

TCATCGTTTGGGCCAGTTTTC---TGTGTCAGTTGTCAATT---------------------TTTTTTATGAAATTTT-TTATTTTGGGCTGTAATGA--------------------------------CAAATATTTGCTGA--------------------------------------TTTAATTGT----------AATGGATAATTGCAGT---------------------------------------------------------------------GTCTTCATTTT----------TACT------AA--	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.........................................................................................................................................TTGCTGA--------------------------------------xTTAATCGT----------AAT.....................................................................................................................	18	1	2.00	0.00	2.00	0.00	0.00
..............................................................................................................................................GA--------------------------------------TTTGATTGT----------GATGGAT.................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
.......................................................................................................................................ATTTGCTGA--------------------------------------xTTAATCGT----------AA......................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
.......................................................................AAAATAT-TTATTTTGGGC.......................................................................................................................................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
..................................................................TTATxAAATTTT-TTTTTTTGGGC.......................................................................................................................................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
.................................................................................................A--------------------------------CATATATTTGCTCA--------------------------------------TTT........................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................................................CATATATTTGCTCA--------------------------------------TTTA.......................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
.................................................................................................A--------------------------------CATATATTTGCTCA--------------------------------------TTTAA......................................................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
........................................................................ATTTTT-TTATTTTGGGAT......................................................................................................................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
.................TTTG---TGTGTxAGTTGTCAA..........................................................................................................................................................................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
.................................................................................................A--------------------------------CATATATTTGCTCA--------------------------------------TTTA.......................................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
......................................ATT---------------------TTTTTTATGAATTTGT-..................................................................................................................................................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00

droVir3

TTTTTT-------------------T------TTGTTAGCTTAATGGAAATCTGCTTGAGCGCAATGCAGAAAATGCATAAGC-T----------------------------------------------------------------AAAGTAAG------CA----------------TTTCCCTCGTCTAGTGAAACAAAAAGTATTCTATTA---------------------------------------------------------------------ACCATATTTTGCCGGAAATAGT-TTAAACACAAAG	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
...........................................ATGGAACTCTGGTTGAGCGCA.................................................................................................................................................................................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00

droMoj3

GGTTTCAGTTCTTTTGTTTTT---TT------TTGATATCCCAAATGTGAAGTGCTA------------AAGAGTTGA--AATTC-------------GGAATGTAGATTGGCATTGAGTTCAATAAGAT-----AT---------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGGATATATT-GTATA---CA--	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.......................................................................AAGTTGA--AATTC-------------GGTATGTAG......................................................................................................................................................................................................................	21	1	2.00	2.00	0.00	0.00	0.00
.........................................................................GTTGA--AATTC-------------GGTATGTAGGT....................................................................................................................................................................................................................	21	1	2.00	2.00	0.00	0.00	0.00
........................................................................AGTTGA--AATTC-------------GGTATGTAGG.....................................................................................................................................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..........................................................................CTGA--AATTT-------------GGAATGTAGA.....................................................................................................................................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00

droGri2

CGATTGGTTTCTTTA-----------------------TG----------------------Ctatacata-----------------------------------------------------------cacatatatatatttatata-----ta------ta----------------tatatatatTTTAG------------------------------------------------------------------------TTTTACATATGATT-----TTGTTGTTTTT----------CTTT------TTAC

Size

Hit Count

Total Norm

V109
Male body

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image																			None
UNAFold Image																			None