dme-mir-4973- 12- and 20-way alignments

dme-mir-4973	chr2L:20562297-20562448 +	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 20562305-20562325
   star strand at position 20562424-20562445
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chr2L:20562282-20562463 +	GGTCCTTGGGCCA-TCGCTCGT-TCAGTCGTCGTTGCGTGTTGTAGGTGGCCTGGTCTACTGAG-CTCCGT--------TTGGAC----------------------------------------------TGCTCCTCC-TCCA----------------------------------------------------------------------------Actactactgcg---------------gcc---------------------------gctgctgctgctgctgcggctg-----------------------ctgcATCCGC--CTGCAACCTGCAACAC----------------------TCACA-C-----CACGGCAACA---------------------------------------------------GAAGTAGAC---GCGTCGC
droSim1	chr2L:20133895-20134076 +	GGTCCTTGGGCCA-TCGCTCGT-TCAGTCGTCGTTGCGTGTTGTAGGTGGCCTGGTCTACTGAG-CTCCGT--------TTGGAC----------------------------------------------TGCTCCTCC-TCCA----------------------------------------------------------------------------gctactactgcg---------------gcc---------------------------gctgctgctgctgctgcggctg-----------------------ctgcATGCGC--CTGCAACCTGCAACAC----------------------TCACA-C-----CACGGCAACA---------------------------------------------------GAAGTAGAC---GCGTCGC
droSec1	super_18:446156-446334 +	GGTCCTTGGGCCA-TCGCTGGT-TCAGTCGTCGTTGCGTGTTGTAGGTGGCCTGGTCTACTGAG-CTCCGT--------TTGGAC----------------------------------------------TGCTCCTCC-TCCA----------------------------------------------------------------------------gctactactgcg---------------gcc---------------------------gctgccgctgctgctg---cgg-----------------------ctgcATCCGC--CTGCAACCTGCAACAC----------------------TCACA-C-----CACGGCAACA---------------------------------------------------GAAGTAGAC---GCGTCGC
droYak2	chr2R:6918558-6918738 +	GGTCCTTGGGCCA-TCGCTCGT-TCAGTCGTCGTTGCGTGTTGTAGGTGGCCTGGTCTACTGAG-CTCCGT--------TTGGAc----------------------------------------------tgctcctgc-tcca----------------------------------------------------------------------------actactactgcg---------------gcc---------------------------gctgct---gctgctgcggctg-----------------------ctgcATCTGCATCTGCAACCTGCAACAC----------------------TCACA-C-----CACGGCAACA---------------------------------------------------GAAATAGAC---GCGTCGC
droEre2	scaffold_4845:3882318-3882503 -	GGTCCTTGGGCCA-TCGCTCGT-TCAGTCGTCGTTGCGTGTTGTAGGTGGCCTGGTCTACTGAG-CTCCGTTTGGACGTTTGGAC----------------------------------------------TGCGCCTCC-TCCA----------------------------------------------------------------------------Actactactgcg---------------gcc---------------------------gccgctgctgctgctgcggctg-----------------------ctgcATCT------GCAACCTGCAACAC----------------------TCACA-C-----CACGGCAACA---------------------------------------------------GAAGTAGAC---GCGTCGC
droAna3	scaffold_12916:7065635-7065877 +	GGTCCTTGGGCCA-TGGCTCGT-TCAGTCGTCGTTGCGTGTTGTAGGTGGCCTGGTCTGCTCAG-CTCAG--------CT----C---------------------------AGCTCTGC----CAGAAATTGCTCCTCC-TTCA---ACC-------GCTGC----------------------------------CG--ATTGTGCCTCGGCAATGgctattgctactgtc---------------gcc---------------------------gctgctgctgctgctgctgcta-----------------------ctgcatct------gcAACCTGCAACACCCATCCAAACGT-CGCATCCACTGACG-C-----CACAGCCATA---------------------------------------------------GGAGAAGTCGTAACGTCGC
dp4	chr4_group3:7758140-7758314 -	GGTCCTTTCGCCAGGCGCTCGTTTCAGTCGTCGTTGCGTGTTGTAGGTGGActggtctgctctg-ctccg--------ct----c---------------------------tgctctgc---ccagc---------------------------------------------------------------------------------------------------------------------------------------------------------actgctGTTGCTC----CA-----------------------CTGCATCTCT------CTCCTac---acacacacacacgcacgcacacac--acg-caagcacacaACAGCA---------------------------------------------------AAAAT-CTC---GCGACGC
droPer1	super_1:9204247-9204421 -	GGTCCTTTCGCCAGGCGCTCGTTTCAGTCGTCGTTGCGTGTCGTAGGTGGACTGGTGCGGTCTG-ATCCG--------CT----T---------------------------TGCTCTGC---CCAGC---------------------------------------------------------------------------------------------------------------------------------------------------------ACTGCTGTTGATC----CA-----------------------CTGCATCTCT------CTCCTac---acacacacacacgcacgcacacac--acg-caagcacacaACAGCA---------------------------------------------------AAAAT-CTC---GCGACGC
droWil1	scaffold_180708:1965385-1965667 +	GGTCCTTTCGCAA-TCGCTCGT-TCAGTCGTCGTTGCGTGTTGTAGGtggcctggtctggtctggcttgga--------ctggactggtctgAAGTTTTTGGCAAGTTTTTTTGCTCTGC---C----------------------------------ACTGCCACA-------------------------------ACCAGTGTTCTTCA---------ACTAAtgctgct---------------tct---------------------------actgctaaagctgctgctgctg-----------------------ctgcATCTTC-------ACCTGC---ACACATAGCCACGT-CGACTC-------GTCGGGGTCACCAAGGAAAAAATCAACGAAAAATAAT------AA---TAACTGCTAAAAATGAAAGAAAAAAGAGTC---TCGTCGC
droVir3	scaffold_12963:13534067-13534330 -	GGTCCTTTCGCAA-TCGCTCGT-TCAGTCGTCGTTGCGTGTTGTAGGTGGTCTGGTCTGCTCTG-TGCTG--------G----TC---------------------------TGCGCTGCTGCCCAG------------------ATTTTTGCTGC-CACTGGCACACACTGATTGGGATGCCTctgccgctgctgccg--ttgctgtcgagccgacg-------------ttgctgctgattttgctgtt---------------------------gctgttgctgttgctgttgctg-----------------------ctACATCTTCC---GCA-------------------------------------------------------ATG----ACGACGACCAACCC---AAA---CTTCTGTTTCAATTG----CCGTACGCGAC---GCGACGC
droMoj3	scaffold_6500:24644505-24644771 +	GGTCCTTTCGCAA-TCGCTCGT-TCAGTCGTCgttgcgtgttgtaggtggtctggtctgctctg-gtctg--------g----cc---------------------------tgcgctgc--------------tgttcagcctactttttgatgc-cactgccacacactgatggtgatgccttc-----------------------------------gctgctgctgct---------------gctgctgcttctgttgctgctgccgtcgttgctgtcgtcgctgctattgctg-----------------------cCACATCTTCT---ACA-------------------------------------------------------ACGACCGACGACGACCAACCC---AAACTGCTTCTGTTTCAATTG----CCGTACGCGAC---GCGACGC
droGri2	scaffold_15126:6330398-6330651 +	GGTCCTTTCGCAA-TCGTTCGT-TCAGTCGTCGTTGCGTGTTGTAGGtggtctggtctgctctg-gtctg--------g----tc---------------------------tACGCA--------------GCTGCTCC-CCAAACTTTTGCTGTCTGCTGA-----ACTGAATGTAATGGCTct-----------------------------------gctgatgctgat---------------gcc---------------------------gccgatgccgctgatgccgctgctgcCCATCGCTGCCCAATGCAGCCACAGCTTCG---ACA-------------------------------------------------------ATG----ACGACGACTAACCCACCAAA---CTTCTGTTTCAATTG----CTATACGCGAC---GCGACGC

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chr2L:20562282-20562463 +	NA	GGTCCT---------TGGGCCA----TCGCT---CGT---------TCAGTCGTCGTTGCG--TGTTGTAGG---TGGC--CTGG-----TCTACTGAGCTCCG-----------------------TTTGG-ACTGCT---------------CCTCCTCCAACTA---CTACTGC---G------GCCGCTGCTG---------------------------------CTGCT---GCTGCG---GCTGCTG---------CATCCGC--CTGC-------AACCTGCAACA---------CTCACA-----------------CCAC-----------GGCAACAGAAGTAGACGCGTCG-C
droSim1	chr2L:20133895-20134076 +	21	GGTCCT---------TGGGCCA----TCGCT---CGT---------TCAGTCGTCGTTGCG--TGTTGTAGG---TGGC--CTGG-----TCTACTGAGCTCCG-----------------------TTTGG-ACTGCT---------------CCTCCTCCAGCTA---CTACTGC---G------GCCGCTGCTG---------------------------------CTGCT---GCTGCG---GCTGCTG---------CATGCGC--CTGC-------AACCTGCAACA---------CTCACA-----------------CCAC-----------GGCAACAGAAGTAGACGCGTCG-C
droSec1	super_18:446156-446334 +	165	GGTCCT---------TGGGCCA----TCGCT---GGT---------TCAGTCGTCGTTGCG--TGTTGTAGG---TGGC--CTGG-----TCTACTGAGCTCCG-----------------------TTTGG-ACTGCT---------------CCTCCTCCAGCTA---CTACTGC---G------GCCGCTGCCG---------------------------------CTGCT---GCTGCG------GCTG---------CATCCGC--CTGC-------AACCTGCAACA---------CTCACA-----------------CCAC-----------GGCAACAGAAGTAGACGCGTCG-C
droYak2	chr2R:6918558-6918738 +	34	GGTCCT---------TGGGCCA----TCGCT---CGT---------TCAGTCGTCGTTGCG--TGTTGTAGG---TGGC--CTGG-----TCTACTGAGCTCCG-----------------------TTTGG-ACTGCT---------------CCTGCTCCAACTA---CTACTGC---G------GCCGCTGCTG---------------------------------CTG------CTGCG---GCTGCTG---------CATCTGCATCTGC-------AACCTGCAACA---------CTCACA-----------------CCAC-----------GGCAACAGAAATAGACGCGTCG-C
droEre2	scaffold_4845:3882318-3882503 -	818	GGTCCT---------TGGGCCA----TCGCT---CGT---------TCAGTCGTCGTTGCG--TGTTGTAGG---TGGC--CTGG-----TCTACTGAGCTCCGTTT---------------GGACGTTTGG-ACTGCG---------------CCTCCTCCAACTA---CTACTGC---G------GCCGCCGCTG---------------------------------CTGCT---GCTGCG---GCTGCTG---------CAT------CTGC-------AACCTGCAACA---------CTCACA-----------------CCAC-----------GGCAACAGAAGTAGACGCGTCG-C
droEug1	scf7180000409767:732654-732840 -	320	GGTCCT---------TGGGCCA----TCGCT---CGT---------TCAGTCGTCGTTGCG--TGTTGTAGG---TGGC--CTGG-----TCTACTCAGCTCCG-----------------------TTTTG-ACTGCT---------------CCTCCTCCAACTGCTACTACT---GCTACTGAGTCTGCCGCCG---------------------------------CTGCT---GCTGCT---GCTGCTG---------CAT------CTGC-------AACTTGCCACA---------CTCACA-----------------CCAC-----------GGCAACAGAAGTAGACGCGTCG-C
droBia1	scf7180000302422:7522699-7522885 -	570	GGTCCT---------TGGGCCA----TCGCT---CGT---------TCAGTCGTCGTTGCG--TGTTGTAGG---TGGC--CTGG-----TCTACTCAGCTCCG-----------------------TTCTG-ACTGCT---------------CCTCCTCCAGCTG---CCACCGC---CACCGCCACTGCTGCTG---------------------------------CTGCT---GCTGCGGCAGCTGCTG---------CAT------CTGC-------AACCTGCAACA---------CTCACA-----------------CCAC-----------GGCAACAGAAGTAGACGCGTCG-C
droTak1	scf7180000415104:240985-241171 -	293	GGTCCT---------TGGGCCA----TCGCT---CGT---------TCAGTCGTCGTTGCG--TGATGTAGG---TGGC--CTGG-----TCTACTCAGCTCCG-----------------------TTTTG-ACTGCT---------------CCTCCTCCAACTG---CCACA---GCCACTGCGTCTGCCGCTG---------------------------------CTGCT---GCTGCGGCAGGCGCTG---------CAT------CTGC-------AACCTGCAACA---------CTCACA-----------------CCAC-----------GGCAACAGAAGAAGACGCGTCG-C
droEle1	scf7180000491186:554861-555040 +	251	GGTCCT---------TGGGCCA----TCGCT---CGT---------TCAGTCGTCGTTGCG--TGTTGTAGG---TGGC--CTGG-----TCTACTCAGCTCCG-----------------------TTGTG-ACTGCT---------------CCTCCTCCAACTG---CTACT---GCTACTGCGTCTGCTGCTG------------------------------------------CTGTC---GCTGCTG---------CAT------CTGC-------AACCTGCAACA---------CTCACACCCACGCACCG------CCAC-----------GG------AC---ACCACGTCG-C
droRho1	scf7180000779025:471-665 +	68	GGTCCT---------TGGGCCA----TCGCT---CGT---------TCAGTCGTCGTTGCG--TGTTGTAGG---TGGC--CAGG-----TCTACTCAGCTCCG-----------------------TTTTG-ACTGCT---------------CCTCCTCCAACTG---CTACT---ACTACTGCGTCTGCTGCTG---------------------------------CTACT---ACTGCT---GCTGCTG---------CAT------CTGC-------AACCTGCAACA---------CTCACACCCACGCACCA------CCAC-----------GGCATCAGAAGTAGACGCGTCG-C
droFic1	scf7180000453842:74384-74567 +	117	GGTCCT---------TGGGCCA----TCGCT---CGT---------TCAGTCGTCGTTGCG--TGTTGTAGG---TGGC--CTGG-----TCTACTCAGCTCCG-----------------------TTTCG-ACTGCT---------------CCTCCTCCAACTG---CTGTT---GCCACTGCGTCTGCTGCTG---------------------------------CTGCT---GCTGCG---ACTGCTG---------CAT------CTGC-------AACCTGCCACA---------CTCACA-----------------CCAC-----------GGCAACAGAAGTAGACGCGTCG-C
droKik1	scf7180000302408:757922-758128 +	69	GGTCCT---------TGGGCCA----TCGCT---CGT---------TCAGTCGTCGTTGCG--TGTTGTAGG---TGGC--CTGG-----TCTGCTCAGCTCCAGCTCCGGCTCCTGCTCCAGCTCGTCCAG-ACGGCT---------------CCTCCTCCAGCTG---------C---G------GCTGCTGCTG---------------------------------CTGTC---ACTGCT---GCTGCTG---------CAT------CTGCAACCTACAACCTGCCACA---------CTCACG------G----ACACCT---CAGCAAT-----GGCACCAGA-----ACGTGTCG-C
droAna3	scaffold_13117:435722-435893 +	92	GGC-CT---------TGGTCT------CCAT---CTT---------GGGGTAGCCGTAGGG--AGC----GA---TGGC--CTTG-----T-TGGTGAGTTCCA-------------------------GGG-GCTTCT---------------CTGGGGCCATTTG---CTGCA---GCTGCTGCTGCTGCTGCTG------CTGGTG---------------------TTGCT---GCTGCT------TCT----------CCT------CGGC-------G--TCGCGTCG---------CTCGCG-----------------CAGC-----------TGCT--CGTAGTAGGGACGATG-C
droBip1	scf7180000396721:960768-960946 +	124	GATGGT---------GGGGCTG----CTGTT---GGT---------AGGGCGGCTCCTTCA--CGTATT--------CC--CCGG--ACGTCTG-------------------------------------------CTGCTCCTGTGGCTGCTGCACCTGCAACAA---CTGCT---GCTGCTGCGGCTGCTGATG---------------------------------TTGCT---GCTGCT---------G---------C---------TGT-------TGCGTGGAATACATGGCCATCCCTCA-----------------TGGC-----------AGCTACACGAGCAAACTGGGCGCC
dp4	chrXL_group3b:83617-83794 -	780	ATCGCCCGAATTAAAT--GCTG----CTGCGGTAAATGTTGCTGTTGGTGTTGTTGTTGC---TGCTGTTGG---TGT-----------------------------------------------------T-GCTGCT---------------GCTGCTGCTGCTG---CTGTTGGTGTTGCT---GCTGCTGCTG---------------------------------CTGCTGCTGCTGTT---GGTGGTG---------CTG------CTGC-------AACGTGTTACT-------------TG-----------------CCAC-----------TGCAGCTGCAGCCGCCGCCGCC-G
droPer1	super_1:9204247-9204421 -	533	GGTCCT---------TTCGCCA---GGCGCT---CGT--------TTCAGTCGTCGTTGCG--TGTCGTAGG---TGGA--CTGG-----TGCGGTCTGATCCG-----------------------CTTTGCTCTGCC--------------------------------------------------CAGCACTG---------------------------------CTGTT---GAT-------CCACTG---------CAT------CTCTCTCCTACAC------ACA---------CACACACGCACGC----ACACAC---ACGCAAGCACACAACAGCAAAAAT-CTCGCGACG-C
droWil1	scaffold_185042:973-1158 +	386	CACCGC---------T--GCCA----CTGCT---GTA---------CCCGCCGCCGCTGCCACTGCTGTACCCGCTG-C--CACTGC---TGTACCCACCACCG-----------------------CTGCC-ACTGCT---------------GTACCCTCCGCCG---CTGCC---ACTGCTGTACCCGCCGCCGCTGCCACTGCTGTACCCGCTGCCACTGCTGTACCCACC---ACCGCTGCCACTGCTG---------TAC----------------------------------------------------------------------------------------CCGCCGCCG-C
droVir3	scaffold_12932:219640-219816 +	436	GGCGCC---------AGTGCCG----C-GAC---CGC---------CCAGC-GTG--TTCA--TGTTGTTGC------C--GTTG------CCGCCCTGTCGCT--------------------------------------GCTGAGATTGCTGCTGTTGCTGCTG---CTGCT---GCTGCTGTTGCTGCTGTTG---------------------------------CTGCT---GCTGCTGCTGCTGCAG---------CAC------CTG--------ATTCTGCAGAT---------CCCACT-----------------GCGC-----------ATGAAAGAATTGAGAAGGGT---C
droMoj3	scaffold_6359:957462-957643 -	1768	TGCGAT-----------AGCTG----CCACC---CGC---------ATTTGCG-CTTTGCG--TGCCGAGAA---ATGC--GCGG-----AATGCAAAGGAG---------------------GCCGTTTGT-ATTGC-----------------CTGCTCCTGCTG---CTGCTGC---T------GCTGCTGTTG---------------------------------CTGCT---GCTCCT---GCTGCTTCTTCTGCTTGCT------CAAC-------GGCCATAGATA---------CAGCCG-----------------GAA-------------ATACTTGAAATTTTTGCAGCG-C
droGri2	scaffold_15245:292322-292482 +	1492	CCT------------TTGCCCGCCTCTCTCT---ATT---------GTGTCTGTTGATGCT--TGTTGCAGC---TTGCAGCTTT-----GCTGTTGTGGCATG-----------------------TTTAG-AAAGCG---------------GTTGCTC-GCCTG---CTGCTGT---T------GCTGCTGCTG---------------------------------CTGCT---GCTGCT---GCTGCTC---------CGC------TTGC-------CCAGTGCACCA---------CTCACT-----------------GCAC-----------AATA--------------------

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

GGTCCTTGGGCCA-TCGCTCGT-TCAGTCGTCGTTGCGTGTTGTAGGTGGCCTGGTCTACTGAG-CTCCGT--------TTGGAC----------------------------------------------TGCTCCTCC-TCCA----------------------------------------------------------------------------Actactactgcg---------------gcc---------------------------gctgctgctgctgctgcggctg-----------------------ctgcATCCGC--CTGCAACCTGCAACAC----------------------TCACA-C-----CACGGCAACA---------------------------------------------------GAAGTAGAC---GCGTCGC

Size

Hit Count

Total Norm

droSim1

GGTCCTTGGGCCA-TCGCTCGT-TCAGTCGTCGTTGCGTGTTGTAGGTGGCCTGGTCTACTGAG-CTCCGT--------TTGGAC----------------------------------------------TGCTCCTCC-TCCA----------------------------------------------------------------------------gctactactgcg---------------gcc---------------------------gctgctgctgctgctgcggctg-----------------------ctgcATGCGC--CTGCAACCTGCAACAC----------------------TCACA-C-----CACGGCAACA---------------------------------------------------GAAGTAGAC---GCGTCGC	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
....................................................................................................................................................................................................................................CTGCT---------------GCC---------------------------GATGCTGCTG.................................................................................................................................................................................	18	1	8.00	0.00	8.00	0.00	0.00
.........................AGTCGTCGTTGCGTGTTGTAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	5.00	0.00	4.00	0.00	1.00
.................................................GCCTGGTCTACTGAG-CTC.............................................................................................................................................................................................................................................................................................................................................................................................................	18	1	4.00	0.00	4.00	0.00	0.00
...................................GCGTGTTGTTGTTGGCCT............................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	4.00	0.00	3.00	0.00	1.00
.........................AGTCGTCGTTGCGTGTTGTAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	0.00	2.00	0.00	0.00
...........................................................................................................................................................................................................................................................................................TGCTGCTTCTGCTGCTG-----------------------CT............................................................................................................................................	19	2	1.00	0.50	0.00	0.00	0.50
....................................................................................................................................................................................................................................CTGCT---------------GCC---------------------------GGTGCTGCTG.................................................................................................................................................................................	18	1	2.00	0.00	2.00	0.00	0.00
.........................AGTCGTCGTTGCGTGTTGTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	0.00	2.00	0.00	0.00
........................................................................................................................................................................................................................................................................................TGCTGCTTCTGCTGCTGCT......................................................................................................................................................................	19	2	1.00	0.50	0.00	0.00	0.50
.........................AGTCGTCGTTGCGTGTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
.......................................................................................................................................................................................................................................................................................CTGCTGCTGCTCCTGCTG........................................................................................................................................................................	18	4	0.25	0.00	0.00	0.25	0.00
....................................................................................................................................................................................................................................CTGCG---------------GCC---------------------------GTTGCTGCTG.................................................................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
....................................................................................................................................................................................................................................CTGCT---------------GCC---------------------------GCTGCTGCTGCTG..............................................................................................................................................................................	21	3	0.33	0.00	0.33	0.00	0.00
....................................................................................................................................................................................................................................CTGCG---------------GCC---------------------------GCTGCCACTG.................................................................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
.........................................................................................................................................................................................................................................................CC---------------------------ACTGCTGCTGCTGCTG...........................................................................................................................................................................	18	2	0.50	0.00	0.00	0.00	0.50
............................................................................................................................................................................................................................................................................................GCTGCTACTGCGTCTG-----------------------CTG...........................................................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00
...............................................................................TTGGAC----------------------------------------------TGCTCCTCA-CCCA----------------------------------------------------------------------------G...................................................................................................................................................................................................................................................	20	1	1.00	0.00	0.00	0.00	1.00
.....................................................................................................................................................................................................................................TGCT---------------GCC---------------------------GCTGCAGCTGCTG..............................................................................................................................................................................	20	2	0.50	0.00	0.00	0.00	0.50
........................................................................................................................................................................................................................................................................................TGCTGCTGCTGCTACGGCTG-----------------------..............................................................................................................................................	20	1	1.00	0.00	0.00	0.00	1.00
..........................................................................................................................................................................................................................................................................................CTTCTGCTGCTGCGTCTG-----------------------..............................................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
.........................................................................................................................................................................................................................................................CT---------------------------GCTGCTGCTCCTGCTG...........................................................................................................................................................................	18	4	0.25	0.00	0.00	0.25	0.00
...........................................................................................................................................................................................................................................................................................TGCTGCTTCTGCTGCTG-----------------------CTG...........................................................................................................................................	20	2	0.50	0.00	0.00	0.00	0.50
.......................................................................................................................................................................................................................................................................................CTGCTGCCGCTGCTGCTGCTG-----------------------..............................................................................................................................................	21	3	0.33	0.00	0.33	0.00	0.00
.................................................................................................................................................................................................................................................................................................................................................................................................CACGGCAACA---------------------------------------------------GAAGTAGAC---GCT....	22	1	1.00	0.00	1.00	0.00	0.00
...........................................................................................................................................................................................................................................................................................TGCTACTGCTGCCGCTG-----------------------C.............................................................................................................................................	18	2	0.50	0.00	0.00	0.00	0.50
........................................................................................................................................................................................................................................................GCC---------------------------GCTGCCGTTGCTGCTG...........................................................................................................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
........................................................................................................................................................................................................................................................................................TGCTGCTTCTGCTGCTGCTG-----------------------..............................................................................................................................................	20	2	0.50	0.00	0.00	0.00	0.50
.............................................................................................................................................................................................................................................................................................CTGCTGCAGCGCCTG-----------------------CTG...........................................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
............................................................................................................................................................................................................................................................................................GCTGCTGCTGCGACTG-----------------------CTG...........................................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
...........................................................................................................................................................................................................................................................................................TGCTGCCGCTGCAGCTG-----------------------CTG...........................................................................................................................................	20	2	0.50	0.00	0.00	0.00	0.50
.......................................................................................................................................................................................................................................................................................CAGCTGCTGCTGCAGCGGC.......................................................................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
........................................................................................................................................................................................................................................................................................CGCTGCTGCTGCTGCGGCTG-----------------------..............................................................................................................................................	20	2	0.50	0.00	0.50	0.00	0.00
.........................AGTCGTCGTTGCGTGTTGTAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	0.00	1.00	0.00	0.00
.............................................................................................................................................................................................................................................................................................CTGCTGCTGCTCCTG-----------------------CTG...........................................................................................................................................	18	4	0.25	0.00	0.00	0.25	0.00
..........................................................................................................................................................................................................................................................................................CTGCTGCCGCTGCTGCTG-----------------------CTG...........................................................................................................................................	21	3	0.33	0.00	0.33	0.00	0.00
...............................................................................................................................................................................................................................TGCTACTGCT---------------GCC---------------------------GCTGC......................................................................................................................................................................................	18	2	0.50	0.00	0.00	0.00	0.50
..........................................................................................................................................................................................................................................................................................CTGCTGCTGCTCCTGCTG-----------------------..............................................................................................................................................	18	4	0.25	0.00	0.00	0.25	0.00
..........................................................................................................................................................................................................................................................C---------------------------GCTGCTGCTGCTGCGGCTG........................................................................................................................................................................	20	2	0.50	0.00	0.50	0.00	0.00
.....................................................................................................................................................................................................................................................................................................................................................................................................GCAACA---------------------------------------------------GAAGTAGAC---CCCT...	19	1	1.00	0.00	0.00	0.00	1.00
........................................................................................................................................................................................................................................................................................TGCTGCTGCTxCTTCGGCT......................................................................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
........................................................................................................................................................................................................................................................................................TGCTGCTGCTGTTGCTGCTG-----------------------..............................................................................................................................................	20	2	0.50	0.00	0.50	0.00	0.00
...........................................................................................................................................................................................................................................................................................TGCTGCTGCTGTTGCTG-----------------------CTG...........................................................................................................................................	20	2	0.50	0.00	0.50	0.00	0.00
........................................................................................................................................................................................................................................................GCC---------------------------GCTGCCGCTxCTGCTG...........................................................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00

droSec1

GGTCCTTGGGCCA-TCGCTGGT-TCAGTCGTCGTTGCGTGTTGTAGGTGGCCTGGTCTACTGAG-CTCCGT--------TTGGAC----------------------------------------------TGCTCCTCC-TCCA----------------------------------------------------------------------------gctactactgcg---------------gcc---------------------------gctgccgctgctgctg---cgg-----------------------ctgcATCCGC--CTGCAACCTGCAACAC----------------------TCACA-C-----CACGGCAACA---------------------------------------------------GAAGTAGAC---GCGTCGC	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
...........CA-TCGGTGGT-TCAGTGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	3.00	1.00	2.00	0.00
.........................AGTCGTCGTTGCGTGTTGTAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	0.00	1.00	1.00
....................................................................................................................................................................................................................................CTGCT---------------GCC---------------------------GCTGCTGCTGCTGCT............................................................................................................................................................................	23	2	0.50	0.00	0.00	0.50
............A-TCGGTGGT-TCAGTCGTCGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	0.00	0.00	1.00
.......................................................................................................................................................................................................................................................................................................................................................TGCAACAC----------------------TCACA-C-----CACGGCA.........................................................................	21	1	1.00	0.00	0.00	1.00
.................................................GCCTGGTCTACTGAG-CTCCGT--------TTG...............................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	0.00	0.00	1.00
..............................TCGTTGCGTGTTGTAGGTGGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00
...........................................................................................................................................................................................................................................................................................CGCTGCTGCTG---CCG-----------------------CCGC..........................................................................................................................................	18	3	0.33	0.00	0.33	0.00
..............TCGGTGGT-TCAGTGGTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	0.00	0.00	1.00
.........................................................................................................................................................................................................................................................CT---------------------------GCTGCCGCTGCTGCTG---CTG-----------------------CT............................................................................................................................................	23	2	0.50	0.00	0.00	0.50
............A-TCGCTGGT-TCAGTGGTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	0.00	0.00	1.00
............A-TCGGTGGT-TCAGTCGTAG................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	0.00	1.00	0.00
.......................................................................................................................................................................................................................................................................................................................................................TGCAACAC----------------------TCACA-C-----CACGGCAA........................................................................	22	1	1.00	0.00	0.00	1.00
.........................AGTCGTCGTCGCGTGTTGTAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	0.00	1.00	0.00
.......................................................................................................................................................................................................................................................................................................................................................TGCAACAC----------------------TCACA-C-----CACGGCAAA.......................................................................	23	1	1.00	0.00	1.00	0.00
.......................................................................................................................................................................................................................................................................................................................................................TGCAACAC----------------------TCACA-C-----CACGGCAAG.......................................................................	23	1	1.00	0.00	0.00	1.00

droYak2

GGTCCTTGGGCCA-TCGCTCGT-TCAGTCGTCGTTGCGTGTTGTAGGTGGCCTGGTCTACTGAG-CTCCGT--------TTGGAc----------------------------------------------tgctcctgc-tcca----------------------------------------------------------------------------actactactgcg---------------gcc---------------------------gctgct---gctgctgcggctg-----------------------ctgcATCTGCATCTGCAACCTGCAACAC----------------------TCACA-C-----CACGGCAACA---------------------------------------------------GAAATAGAC---GCGTCGC	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.........................AGTCGTCGTTGCGTGTTGTAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	6.00	0.00	0.00	0.00	0.00	6.00
.........................AGTCGTCGTTGCGTGTTGTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	0.00	1.00	0.00	0.00	2.00
....................................................................................................................................................................................................................................CTGCT---------------GCC---------------------------GATGCT---GCTG..............................................................................................................................................................................	18	1	2.00	0.00	1.00	0.00	1.00	0.00
................................................................................................................................................................................................................................................................................................CTGCTGCCGATG-----------------------CTGC..........................................................................................................................................	16	2	0.50	0.00	0.00	0.00	0.50	0.00
....................................................................................................................................................................................................................................CTGCT---------------GCC---------------------------GATGCT---GCTGC.............................................................................................................................................................................	19	1	1.00	0.00	0.00	0.00	1.00	0.00
...........................................................................................................................................................................................................................................................................................................................................................................................C-----CACAGAAACA---------------------------------------------------GAAATAGA...........	19	1	1.00	1.00	0.00	0.00	0.00	0.00
....................................................................................................................................................................................................................................CTGCT---------------GCC---------------------------GATGCT---GCT...............................................................................................................................................................................	17	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................................................................................................................................................................................................................................TGTT---GTTGCTGCGGCTG-----------------------CTG...........................................................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
................................................GGCTTGGTCTACTCAG-CTC.............................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	0.00	0.00	0.00	1.00	0.00
.................................................GCCTGGTCTACTGAG-CTCCG...........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
.........................AGTCGTCGTTGCGTGTTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
.......................................................................................................................................................................................................................................................................................................................................................TGCAACAC----------------------TCACA-C-----CACGGCA.........................................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
...........................................................................................................................................................................................................................................................................................................G-----------------------CTGCATCxACATCTGCAA............................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
....................................................................................................................................................................................................................................CTGCT---------------GCC---------------------------GATGCT---GC................................................................................................................................................................................	16	2	0.50	0.00	0.00	0.00	0.50	0.00
....................................................................................................................................................................................................................................CTGAG---------------GAC---------------------------GCTGCT---GCTG..............................................................................................................................................................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
.........GCCG-TCGCGCGT-TCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................	16	1	1.00	0.00	0.00	0.00	1.00	0.00

droEre2

GGTCCTTGGGCCA-TCGCTCGT-TCAGTCGTCGTTGCGTGTTGTAGGTGGCCTGGTCTACTGAG-CTCCGTTTGGACGTTTGGAC----------------------------------------------TGCGCCTCC-TCCA----------------------------------------------------------------------------Actactactgcg---------------gcc---------------------------gccgctgctgctgctgcggctg-----------------------ctgcATCT------GCAACCTGCAACAC----------------------TCACA-C-----CACGGCAACA---------------------------------------------------GAAGTAGAC---GCGTCGC	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
........................................................................................................................................................................................................................................................................................CGCTGCCGCTGCTGCAGCT......................................................................................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00
........................................................CTACTGAG-CTCCGTTTGGACG...................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
.............................GTGGTTxCGTGTTGTAGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
......................................TGTTGTAGGTGGCCTGGTC........................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
.........................................................................................................................................TCC-TCCA----------------------------------------------------------------------------ACTACTACTGCG---------------GCC---------------------------GC.........................................................................................................................................................................................	24	1	1.00	0.00	0.00	0.00	1.00
........................................................................................................................................................................................................................................G---------------ACC---------------------------GCCGGTGCTGCTGC.............................................................................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
...............................................................................................................................................................................................................................................................................................GCTGCTGCGGCTG-----------------------CTTCGT........................................................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00

droAna3

GGTCCTTGGGCCA-TGGCTCGT-TCAGTCGTCGTTGCGTGTTGTAGGTGGCCTGGTCTGCTCAG-CTCAG--------CT----C---------------------------AGCTCTGC----CAGAAATTGCTCCTCC-TTCA---ACC-------GCTGC----------------------------------CG--ATTGTGCCTCGGCAATGgctattgctactgtc---------------gcc---------------------------gctgctgctgctgctgctgcta-----------------------ctgcatct------gcAACCTGCAACACCCATCCAAACGT-CGCATCCACTGACG-C-----CACAGCCATA---------------------------------------------------GGAGAAGTCGTAACGTCGC	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
.......................................................................................................................................................................................................................................................................................CTGCTGTTGCTGTTGCTGC.......................................................................................................................................................................	19	1	3.00	0.00	3.00	0.00	0.00
......................................................................................................................................................................................................................................................................................GCTGCTGTTGCTGTTGCTG........................................................................................................................................................................	19	1	2.00	0.00	2.00	0.00	0.00
..................................................................................................................................TTGGTCCxCC-TTCA---ACC-------GCT................................................................................................................................................................................................................................................................................................................	19	1	2.00	0.00	2.00	0.00	0.00
............................................AGGTGGCCTGGGCTGCAC...................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
.................................................................CTCAG--------CT----C---------------------------AGCTCTGC----CAGAA................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
...........................................TAGATGGCCTGGGCTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................	17	1	1.00	0.00	0.00	1.00	0.00
.......................................................................................................................................................................................................................................................................................CTGGTGCTGCTGCTGCCGC.......................................................................................................................................................................	19	2	0.50	0.00	0.50	0.00	0.00
.........................................TGTAGGTGGCCTGGTCTGCTCAG-CTCA............................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	0.00	1.00	0.00	0.00
.......................................................................................................................................................................................................................................................................................CTTCTGGTGCTGCTGCTGC.......................................................................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
......................................................................................................................................................................................................................................................................................GCTGCTGCTGCTGTTGGT.........................................................................................................................................................................	18	2	0.50	0.00	0.50	0.00	0.00
...............................................................................................................................................................................................................................................................................................GCTGCTGCTGCTA-----------------------CTGCCC........................................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
..........................................GTAGGTGTCCTGGGCTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
.......................................................................................................................................................................................................................................TC---------------GCC---------------------------TCTGCTGTTGCTGC.............................................................................................................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
...........................................................................................................................................................................................................................................................................................................................................................................................C-----CACAGCCATA---------------------------------------------------GGAGAAGTCGTAAC.....	25	1	1.00	0.00	1.00	0.00	0.00
......................................................................................................................................................................................................................................................................................GTTGCTGTTGCTGCTGCTG........................................................................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
.........................................................................................................................................................................................................ATTGTGCCTCGGCAGGGGCT....................................................................................................................................................................................................................................................	20	1	1.00	0.00	0.00	1.00	0.00
.........................................................................................................................................................................................................................................................................................GCTGCTGCTGCTGTTGGT......................................................................................................................................................................	18	2	0.50	0.00	0.50	0.00	0.00
........................................................................................................................................................................................................................................................................................TGCTGGGGCTGCTGCTGCT......................................................................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................................................................................................................................................................................C---------------------------GCTGCTGCTGCTGCCGCTC........................................................................................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00

dp4

GGTCCTTTCGCCAGGCGCTCGTTTCAGTCGTCGTTGCGTGTTGTAGGTGGActggtctgctctg-ctccg--------ct----c---------------------------tgctctgc---ccagc---------------------------------------------------------------------------------------------------------------------------------------------------------actgctGTTGCTC----CA-----------------------CTGCATCTCT------CTCCTac---acacacacacacgcacgcacacac--acg-caagcacacaACAGCA---------------------------------------------------AAAAT-CTC---GCGACGC	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
.........................AGTCGTCGTTGCGTGTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
.............................................................................................................................................................................................................................................................................................................................................................ACACACACAAACGCGCGCA.................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
...............................................................................................................................................................................................................................................................................................................................................................ACACACACGCGCACGCACA...............................................................................................	19	1	1.00	0.00	0.00	1.00	0.00
.........................................................................................................................................................................................................................................................................................................................................................C---ACACACACACACACACTCAC................................................................................................	21	27	0.04	0.00	0.00	0.04	0.00
.........................................................................................................................................................................................................................................................................................................................................................C---ACACACACACACGAACAC..................................................................................................	19	24	0.04	0.00	0.04	0.00	0.00
.......................................................................................................................................................................................................................................................................................................................................................TAC---ACACACACACACGCATG...................................................................................................	20	2	0.50	0.00	0.00	0.00	0.50
................................................................................................................................................................................................................................................................................................................................................................CACACACACACACGAACAC..............................................................................................	19	24	0.04	0.00	0.04	0.00	0.00
.................................................................CTCCG--------CT----C---------------------------TGCTCTGC---TCTG..................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	0.00	0.50	0.00	0.00
..............................................................................................................................................................................................................................................................................................................................................................CATACACACxCGCACGCACAC..............................................................................................	20	1	1.00	0.00	0.00	1.00	0.00
.........GCCAGGCGCTCGTTGAAGTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
.......................................................................................................................................................................................................................................................................................................................................................AAC---ACACACACACACGAA.....................................................................................................	18	2	0.50	0.00	0.50	0.00	0.00
.........................................TGTAGGTGGACTGGTCTGCTCTG-C...............................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	0.00	0.00	1.00	0.00
...........................................................CTCTG-CTCTG--------CT----C---------------------------TGCTCGG..........................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	0.00	0.00	0.00	1.00
.........................................................................................................................................................................................................................................................................................................................................................C---ACACACACACACACACGCACACAC--..........................................................................................	25	16	0.06	0.00	0.06	0.00	0.00
.......................................................................................................................................................................................................................................................................................................................................................TAC---ACACACACACACGCTCGA..................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
...........................................................CTCCG-CTCTG--------CT----C---------------------------TGCTCTG..........................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	0.00	0.50	0.00	0.00

droPer1

GGTCCTTTCGCCAGGCGCTCGTTTCAGTCGTCGTTGCGTGTCGTAGGTGGACTGGTGCGGTCTG-ATCCG--------CT----T---------------------------TGCTCTGC---CCAGC---------------------------------------------------------------------------------------------------------------------------------------------------------ACTGCTGTTGATC----CA-----------------------CTGCATCTCT------CTCCTac---acacacacacacgcacgcacacac--acg-caagcacacaACAGCA---------------------------------------------------AAAAT-CTC---GCGACGC	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
..................................................................TTCG--------CT----T---------------------------TGCTCTGC---ACA...................................................................................................................................................................................................................................................................................................................................................	18	1	3.00	0.00	0.00	0.00	0.00	3.00
..............................................................................................................................GC---------------------------------------------------------------------------------------------------------------------------------------------------------ACTGCTGTTGAAC----CA-----------------------CT............................................................................................................................................	19	1	3.00	0.00	0.00	0.00	0.00	3.00
........................................................................................................................................................................................................................................................................................................................................................AC---ACACACACACACGGAAG...................................................................................................	19	3	0.67	0.00	0.00	0.00	0.00	0.67
....................................................................................................................................................................................................................................................................................................................................................................CACACGGACACACACAC--A.........................................................................................	18	27	0.07	0.00	0.00	0.00	0.00	0.07
.........................................................................................................................................................................................................................................................................................................................................................C---ACACACACACACACACT...................................................................................................	18	46	0.04	0.00	0.00	0.00	0.00	0.04
.................................................................ATTCG--------CT----T---------------------------TGCTCTGG---CC....................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	0.00	0.00	0.00	0.00	2.00
..................................................................................................................................................................................................................................................................................................................................................................CACACAGGCACGCACACAC--C.........................................................................................	20	1	1.00	0.00	1.00	0.00	0.00	0.00
..............................................................................................................................................................................................................................................................................................................................................................CACACACACGCGCACGCACA...............................................................................................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
.................................................................................................................................................................................................................................................................................................................................................................ATACACACGCACGCACACAA--AC........................................................................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
.................................................................................................................................................................................................................................................................................................................................................................................ACAC--ACA-CAAGCACACAAC..........................................................................	19	1	1.00	0.00	1.00	0.00	0.00	0.00
.........................................TGTAGGTGGACTGGCGCGG.....................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
.............................................................................................................................................................................................................................................................................................................................................................GCACACACACACACACGCACA...............................................................................................	21	21	0.05	0.00	0.05	0.00	0.00	0.00
.......................................................................................................................................................................................................................................................................................................................................................TAC---ACACACACACACACT.....................................................................................................	18	33	0.03	0.00	0.00	0.00	0.00	0.03

droWil1

GGTCCTTTCGCAA-TCGCTCGT-TCAGTCGTCGTTGCGTGTTGTAGGtggcctggtctggtctggcttgga--------ctggactggtctgAAGTTTTTGGCAAGTTTTTTTGCTCTGC---C----------------------------------ACTGCCACA-------------------------------ACCAGTGTTCTTCA---------ACTAAtgctgct---------------tct---------------------------actgctaaagctgctgctgctg-----------------------ctgcATCTTC-------ACCTGC---ACACATAGCCACGT-CGACTC-------GTCGGGGTCACCAAGGAAAAAATCAACGAAAAATAAT------AA---TAACTGCTAAAAATGAAAGAAAAAAGAGTC---TCGTCGC	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
..............................................................................................................................................................................................................................................................................................................................................................................TCAC-------GTCGGGGTCACCAA..........................................................................	18	1	14.00	0.00	0.00	0.00	14.00
.............................................................................................................................................................................................................................................................................................................................................................................GTCAC-------GTCGGGGTCACCA...........................................................................	18	1	7.00	0.00	1.00	3.00	3.00
..................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGAAAGAAAAAGAA.............	18	1	6.00	0.00	6.00	0.00	0.00
.................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAGAAAGAAAAAGGA.............	19	1	1.00	0.00	0.00	1.00	0.00
............................................................................................................................................................................................................................................................................................................................................................................CAACAC-------GTCGGGGTCACCA...........................................................................	19	1	1.00	1.00	0.00	0.00	0.00
...........................................................................................................................................................................................................TCTTCGTCA---------ACTAATGCT...........................................................................................................................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
..............................................................................................................................................................................................................................................................................................AGCTGCTGTTGCTG-----------------------TTGC..........................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
.........................AGTCGTCGTTGCGTGTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAGGAAACAAAAAA...............	18	2	0.50	0.00	0.50	0.00	0.00
..........................................................................................................................................................................................................................................................................................CTACAACTGCTGCTGCTG-----------------------CT............................................................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGAAAGAAAAAAAA.............	18	47	0.02	0.00	0.02	0.00	0.00
..............................................................................................................................................................................................................................................................................................CGCTACTGCTGCTG-----------------------CTGC..........................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAAATGAGAGAAAAAA...............	19	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAGAAAAAAGA.............	18	48	0.02	0.00	0.02	0.00	0.00
..............................................................................................................................................................................................................................................................................................TGCTGCTGCTGCTG-----------------------CTGCT.........................................................................................................................................	19	3	0.33	0.00	0.33	0.00	0.00
..........................................................................................................................................................................................................................................................................................................................................................................T-CAACAC-------GTCGGGGTCACCA...........................................................................	20	1	1.00	0.00	0.00	1.00	0.00
................................................GGTCTGGTCTGGTCTGGC...............................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
.....................................GTGTTGTAGGTGGCCTGGTCTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00
.........................................................................................................................................................................................................................................................................................ACTAAAGTTGCTGCTGCTG-----------------------..............................................................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAAAGTGAAAAAAAAA................	18	1	1.00	0.00	1.00	0.00	0.00
.............................................................CTGGCTTGGA--------CTGGACTGGT........................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAAAGTGAAAAAAAAAA...............	19	1	1.00	0.00	1.00	0.00	0.00
..............................................................................................................................................................................................................................................................................................TACTGCTGCTGCTG-----------------------CTGC..........................................................................................................................................	18	2	0.50	0.00	0.50	0.00	0.00
.........................................................................................................................................................................................................................................................................................................................................................................GA-CGAxTC-------GTCGGGGTCACCA...........................................................................	20	1	1.00	0.00	0.00	0.00	1.00
.............................................................................................................................................................................................................................................................................................AAGTTGCTGCTGxTG-----------------------CTGC..........................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
...........................................................................................................................................................................................................................................................................................TACTGCTGCTGCTGCTG-----------------------C.............................................................................................................................................	18	2	0.50	0.00	0.50	0.00	0.00
...........................................................................................................................................................................................................................................................................................TACTGCTGCTGCTGCTG-----------------------CTG...........................................................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
.......................................................................................................................................................................................................................................................................................CTGCTCCAGCTGCTGCTGCTG-----------------------..............................................................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAGAAAGAAAAAAGA.............	20	1	1.00	0.00	1.00	0.00	0.00
.............................................................................................................................................................................................................................................................................................ATGCTGCTGCTGTTG-----------------------CTG...........................................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
.................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAGGAAGAAAAAAGA.............	19	2	0.50	0.00	0.00	0.50	0.00
..................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGAAACAAAAAAGA.............	18	1	1.00	0.00	1.00	0.00	0.00
..............................................................................................................................................................................................................................................................................................AGCTGCTGCTGTCG-----------------------CTGCA.........................................................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGAAAAAAAAAAGA.............	18	47	0.02	0.00	0.02	0.00	0.00
.................................................................................................................................................................................................................................................................................................TGCTGCTGCTG-----------------------CTGCTGCT......................................................................................................................................	19	3	0.33	0.00	0.33	0.00	0.00
.................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAGAAAGAGAAAAGA.............	19	1	1.00	1.00	0.00	0.00	0.00
.................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGGAAAAAAAAAAGA.............	19	1	1.00	0.00	1.00	0.00	0.00
.............................................................................................AATTTTTGGCAAGATTTT..................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
.................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTGAAAGAAAAAAAA.............	19	1	1.00	1.00	0.00	0.00	0.00
....................................CTTGTTGTAGATGGCCTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
.............................................................................................................................................................................................................................................................................................................................................................................AACAC-------GTCGGGGTCACCA...........................................................................	18	1	1.00	0.00	0.00	0.00	1.00
.................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGGAAAGGAAAAAGA.............	19	1	1.00	0.00	1.00	0.00	0.00
.......................................GTTGTAGGTGGCCTGGTAT.......................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00
...................................................................................ACTGGTCTGAAGTTTTTGGCAAG.......................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00
...................................................................................................................TCTGC---C----------------------------------ACTGCCACA-------------------------------ACCAGT.....................................................................................................................................................................................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00

droVir3

GGTCCTTTCGCAA-TCGCTCGT-TCAGTCGTCGTTGCGTGTTGTAGGTGGTCTGGTCTGCTCTG-TGCTG--------G----TC---------------------------TGCGCTGCTGCCCAG------------------ATTTTTGCTGC-CACTGGCACACACTGATTGGGATGCCTctgccgctgctgccg--ttgctgtcgagccgacg-------------ttgctgctgattttgctgtt---------------------------gctgttgctgttgctgttgctg-----------------------ctACATCTTCC---GCA-------------------------------------------------------ATG----ACGACGACCAACCC---AAA---CTTCTGTTTCAATTG----CCGTACGCGAC---GCGACGC	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
...................................................................................................................................................................................................................................................CTGCTGTT---------------------------GGTGTTGCTGTTG..............................................................................................................................................................................	21	2	2.00	2.00	0.00	0.00	0.00	0.00
.......................................................................................................................................................................................................................................................................................CTGTTGTTGTTGCTGTTGCT......................................................................................................................................................................	20	2	2.00	1.00	0.00	0.00	0.00	1.00
......................................................................................................................................................................................................................................................CTGTT---------------------------GTTGTTGCTGTTGCT............................................................................................................................................................................	20	2	2.00	1.00	0.00	0.00	0.00	1.00
.........................................................................................................................................................................................................................................................CT---------------------------GCTGTTGGTGTTGCTGTTG........................................................................................................................................................................	21	2	2.00	2.00	0.00	0.00	0.00	0.00
............................................................................................................................................................................................................................................................................................ATTGTTGCTGTTGCTG-----------------------CT............................................................................................................................................	18	1	3.00	0.00	0.00	0.00	3.00	0.00
...........................................................................................................................................................................................................................................................................................CGCTGTTGTTGTTGCTG-----------------------C.............................................................................................................................................	18	2	1.50	0.00	0.00	0.00	0.00	1.50
...........................................................................................................................................................................................................................................................................................TGTTGTTGCTGTTGTTG-----------------------CT............................................................................................................................................	19	5	0.60	0.00	0.00	0.00	0.60	0.00

droMoj3

GGTCCTTTCGCAA-TCGCTCGT-TCAGTCGTCgttgcgtgttgtaggtggtctggtctgctctg-gtctg--------g----cc---------------------------tgcgctgc--------------tgttcagcctactttttgatgc-cactgccacacactgatggtgatgccttc-----------------------------------gctgctgctgct---------------gctgctgcttctgttgctgctgccgtcgttgctgtcgtcgctgctattgctg-----------------------cCACATCTTCT---ACA-------------------------------------------------------ACGACCGACGACGACCAACCC---AAACTGCTTCTGTTTCAATTG----CCGTACGCGAC---GCGACGC	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
....................................................................................................................................................................................................................................CTGCT---------------GCTGCTGCTGCTGTTGC........................................................................................................................................................................................................	22	4	0.25	0.00	0.00	0.00	0.25
....................................................................................................................................................................................................................................CTGCT---------------GCTGCTGCTGATG............................................................................................................................................................................................................	18	9	0.11	0.00	0.00	0.00	0.11
...................................................................................................................................................................................................................................GCTTCT---------------GCTGCTGCGTCTG............................................................................................................................................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
.................................................................................................................................................................................................................................CTGCTGCT---------------GCTGCTGCTGCT.............................................................................................................................................................................................................	20	3	0.33	0.00	0.00	0.00	0.33
.........................................................TGCTCTG-GTCTG--------G----CC---------------------------TGCGCTG..........................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
...................................................................................................................................................................................................................................................................TGTTGCTGCTGCTGTTGTT...........................................................................................................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00
........................................................................................................................................................................................................................................T---------------GCTGCTGATTCTGTTGTTGCT....................................................................................................................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
..............................................................................................................................................................................................................................CTGCTGCTGCT---------------GCTGCTGCTGT..............................................................................................................................................................................................................	22	4	0.25	0.00	0.00	0.00	0.25
................................................GGGCTGGTCTGGTCTG-G...............................................................................................................................................................................................................................................................................................................................................................................................................	17	2	0.50	0.00	0.50	0.00	0.00
.........................................................................................................................................................................................C-----------------------------------GTTGCTGTTGCT---------------GCTGCTG..................................................................................................................................................................................................................	20	1	1.00	0.00	0.00	0.00	1.00
........................................................................................................................................................................................TT-----------------------------------ACTGCTGCTGCT---------------GCTG.....................................................................................................................................................................................................................	18	3	0.33	0.00	0.33	0.00	0.00
..............................................................................................................................................................................................................................TTACTGCTGCT---------------GCTGCTG..................................................................................................................................................................................................................	18	3	0.33	0.00	0.33	0.00	0.00
........................................................CTGCTCTG-GTCTG--------G----CC---------------------------TGCG.............................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	0.00	0.00	1.00	0.00
.........................................................................................................................................................................................C-----------------------------------GCTGCTGCTGCC---------------GCCGCT...................................................................................................................................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00
.....TTTTGCAA-TCGCTxGT-TCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00
........................................................................................................................................................................................................................................................GCTGCTGCTGCTGTTGTTGC.....................................................................................................................................................................................................	20	3	0.33	0.00	0.00	0.00	0.33
.......................................................................................................................................................................................................................................CT---------------GCTGCTGCTGCTGATG.........................................................................................................................................................................................................	18	9	0.11	0.00	0.00	0.00	0.11
.........................................................................................................................................................................................................................................................CTGCTGCTGCCGTTGCTGC.....................................................................................................................................................................................................	19	3	0.33	0.00	0.00	0.00	0.33
......................................................................................................................................................................................................................................GCT---------------GCTGCTGCTGTTGTTGC........................................................................................................................................................................................................	20	3	0.33	0.00	0.00	0.00	0.33
..............................................................................................................................................................................................................................CTGCTGCTGCT---------------GCTGATG..................................................................................................................................................................................................................	18	9	0.11	0.00	0.00	0.00	0.11
..............................................................................................................................................................................................................................CTGCTGCTGCT---------------GCTGCTGCT................................................................................................................................................................................................................	20	3	0.33	0.00	0.00	0.00	0.33
.....................................................GGGCTGGTCTG-GTCTG--------G----..............................................................................................................................................................................................................................................................................................................................................................................................	17	2	0.50	0.00	0.50	0.00	0.00
........................................................CTGCTCTG-GTCTG--------G----CC---------------------------TG...............................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
......................................................................................................................................................................................................................................GCT---------------GTTGCTGTTTCTGTTGC........................................................................................................................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
..............................................................................................................................................................................................................................CTGCTGCTGCT---------------GCTGCTGTTGC..............................................................................................................................................................................................................	22	4	0.25	0.00	0.00	0.00	0.25
.................................................................................................................................................................................................................................CTGCTGCT---------------GCTGCTGCTGCTGT...........................................................................................................................................................................................................	22	4	0.25	0.00	0.00	0.00	0.25
.............................................................................................................................................................................................................................GCTGCTGCTGCT---------------GTTGTTGC.................................................................................................................................................................................................................	20	3	0.33	0.00	0.00	0.00	0.33
..............................................................................................................................................................................................................................CTGCTGCTGCC---------------GTTGCTGC.................................................................................................................................................................................................................	19	3	0.33	0.00	0.00	0.00	0.33
.................................................................................................................................................................................................................................CTGCTGCT---------------GCTGCTGATG...............................................................................................................................................................................................................	18	9	0.11	0.00	0.00	0.00	0.11

droGri2

GGTCCTTTCGCAA-TCGTTCGT-TCAGTCGTCGTTGCGTGTTGTAGGtggtctggtctgctctg-gtctg--------g----tc---------------------------tACGCA--------------GCTGCTCC-CCAAACTTTTGCTGTCTGCTGA-----ACTGAATGTAATGGCTct-----------------------------------gctgatgctgat---------------gcc---------------------------gccgatgccgctgatgccgctgctgcCCATCGCTGCCCAATGCAGCCACAGCTTCG---ACA-------------------------------------------------------ATG----ACGACGACTAACCCACCAAA---CTTCTGTTTCAATTG----CTATACGCGAC---GCGACGC	Size	Hit Count	Total Norm	V109 Male body
..............................................................................................................................................................................................................................CTGATGCTGAT---------------GCT---------------------------GACGATG....................................................................................................................................................................................	21	1	2.00	2.00
.......................................................................................................................................................GCTGTCTACGGA-----ACTGAAT..................................................................................................................................................................................................................................................................................................	19	1	1.00	1.00
.............................................................................................................................................................................................................................GCTGATGCTGAT---------------GCT---------------------------GACG.......................................................................................................................................................................................	19	1	1.00	1.00

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image