Possible Orthologs for dme-mir-4970

droSim1 - 2 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

chr2L:10541288-10541421 +

89.69

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT CATGTTTAGATCTGACCCAAAGGTGGGCGACAAGGGATGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGTTTCTTTTTCGTGGGCAGCTCTCGCTCCTGACCCTCCTCTTCCTCCGCTTCGTCTTCCCCCGCAT	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
....................................................................................CAGCTCTAGATCCTGACC................................	18	1	1.00	0.00	0.00	1.00	0.00

chrX:14746277-14746354 -

37.88

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT C--------------------------------------------------------GGCCTCCTTGGGTTTTTTCTTTGTCGGCTCTCCCTCCTCCTGCTCGTCTTCTTCCTGCTCTTCATCCTCCTCCTCTT	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
.........................................................................TTCGATGTCGGCTCTCCC...........................................	18	1	3.00	0.00	1.00	2.00	0.00
..........................................................................TCGATGTCGGCTCTCCCT..........................................	18	1	1.00	0.00	1.00	0.00	0.00
.....................................................................TTTTTTTTTTGTCGGCAC...............................................	18	1	1.00	0.00	0.00	1.00	0.00
............................................................................................CCTCCTGTTCGTCTCCTTCCTGCT..................	24	1	1.00	0.00	1.00	0.00	0.00
.........................................................................TTCGATGTCGGCTCTCCCT..........................................	19	1	1.00	0.00	1.00	0.00	0.00
....................................................................GTTTTTTTTTTGCCGGCT................................................	18	1	1.00	0.00	0.00	1.00	0.00

droSec1 - 1 hit found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

super_3:6159513-6159646 +

91.16

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGATGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGTTGCTTTTTCGTGGGCAGCTCTCGCTCCTGACCCTCCTCTTCCTCCGCTTCGTCTTCCCCCGCAT	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
...................................GATGGGAGCAGCAGTTGCTGG..............................................................................	21	1	1.00	0.00	1.00	0.00
............................................AGCAxTTGCTGGCGGTATG.......................................................................	18	1	1.00	0.00	1.00	0.00

droYak2 - 3 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

chr2L:7146365-7146495 +

80.73

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT CATGTTCAAATCGGAGCCAAAGGTGGGCGAGAGGGGCTGTGAGCAGCCGTTGCTGGCGGTGTTCTGTCTCTGCTCCTCCGCCGGCTGCTGTTGCTCCTGACCCTCCTCGTCCTCCGCGTCTTCCTC---GCCGT	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.....................................TGTGAGCAGCCGTTGCTGGCG............................................................................	21	1	18.00	3.00	8.00	0.00	7.00	0.00
.....................................TGTGAGCAGCCGTTGCTGGCGG...........................................................................	22	1	11.00	7.00	1.00	0.00	3.00	0.00
.....................................TGTGAGCAGCCGTTGCTGGCGGT..........................................................................	23	1	3.00	1.00	1.00	0.00	1.00	0.00
.....................................TGTGAGCAGCCGTTGCTGGCGGC..........................................................................	23	1	2.00	0.00	1.00	0.00	1.00	0.00
......................................GTGAxCAACCGTTGCTGGC.............................................................................	18	1	2.00	0.00	1.00	0.00	0.00	1.00
.....................................TGTGAGCAGCCGTTGCTGGCGGTT.........................................................................	24	1	1.00	0.00	0.00	1.00	0.00	0.00
.....................................................................CTCCTTCTCCGCCGGCTG...............................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
....................................CTGTGAGCAGCCGTTGCTGGCG............................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
.....................................TGGGAGCAGCCGTTGCTGGTGGT..........................................................................	23	1	1.00	0.00	0.00	0.00	1.00	0.00
.....................................TGTGAGCAGCCGTTGCTGGCGGG..........................................................................	23	1	1.00	0.00	0.00	0.00	1.00	0.00
.....................................TGTGAGCAGCCGTTGATGGCGGG..........................................................................	23	1	1.00	1.00	0.00	0.00	0.00	0.00
................................................................................CCGGCTGCTGTTTCTCCTGACCC...............................	23	1	1.00	0.00	0.00	0.00	0.00	1.00
....................AGGTGGGCTGGAGGGGCT................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
.....................................TGTGAxCAACCGTTGCTGGC.............................................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
..................AAGGGTGGGCGAGAGGGGC.................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00	0.00

chrX:12971646-12971753 -

40.91

CATGTTTAGATCGG----ACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTC-TTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCT-CCGCTTCATCCTCCTCCGCAT CAGTT--CGCTGCAACTGAG--------------------------GCTAAAGTTGCTGGCTA-CTGCTGATGCT---CGCTCCTTGAGTTGCTGCTGCTGTTGCTGCTGCAGTTGCTGCTGCTGCTGCTGCTGTTGCTG	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
...............................................................................GTTCCTTGAGTTxCTGCTG..........................................	18	6	0.17	0.00	0.00	0.00	0.00	0.17

chr3R:8272522-8272664 +

40.08

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGC-----------------TGGGAGCAGCAGTTGCTGGCGGTATT----CTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCA---T CCGTTTTTCATGGGCAGCGGGGGCGGCTGAGGGGACTTTCTGTGACCGCTCGACT---TGAAGCTGTTGTTGCCGCTGTGCAGGGTCAGGCTGTTG------------TTGCTGTTGCTGTTGTTGCTGTTGCTGTGGCTGCTGCTGCTGCAGTCGGA	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
...................................................................................................................TGCTGTTGTTGGTGTTGCTGTC.....................	22	19	0.05	0.00	0.05	0.00	0.00	0.00
..........TGGGGAGTGGGGGCGGC...................................................................................................................................	17	1	1.00	0.00	0.00	0.00	1.00	0.00
..............................................................................................TG------------TTCGTGTTGCTGTTGTT.................................	19	18	0.06	0.00	0.00	0.06	0.00	0.00
...............................................................................................G------------TTGGTGTTGCTGTTGTC.................................	18	32	0.03	0.03	0.00	0.00	0.00	0.00

droEre2 - 6 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_4929:14689286-14689416 -

77.02

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT CATGTTCAAATCGGACCCAAAGGTAGGTGAGAGGGGCTGGGAGCAGCCGTTGCTGGCGGTATTCTGCCTCTGCTCCTCCACCGGCTGCTGTTGTTCCTGAACCACCTCGTCCTCTGGTTCGTCATCGCC---TT	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.................................................ATGTTGGCGGTATTCTGC...................................................................	18	1	1.00	0.00	0.00	0.00	1.00

scaffold_4690:16033283-16033417 -

48.21

CAT-GTTT-AGATCGGACCCAAAGGTGGGCGACAAG--GGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT TGATGACGCATGCCAGCGGCCATGGCGGAGGCCAGGTTCTCTCGCTGCTGCTGCTGCACGC--GCTGCTGTTGCTGCTGTGCCTGCTGCTGCTGCTGATGCTGATGCTGCTG--CTGCTGCTGCAGCTGCAACTGCTG	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
...........................................GGTGCTGxTGCTGCACGC--GCT........................................................................	20	1	1.00	1.00	0.00	0.00	0.00
.........................................................................CTGCTGTGCCTGCTGCGGCG.............................................	20	5	0.20	0.00	0.00	0.00	0.20
.........................................................................................TGATGCCGATGCTGATGCT..............................	19	9	0.11	0.00	0.00	0.00	0.11
...............................................................................................TGATGCCGATGCTGATG--CT......................	19	9	0.11	0.00	0.00	0.00	0.11
..............................................................................................CTGATGCTGATGCTGCTG--CCT.....................	21	14	0.07	0.07	0.00	0.00	0.00

scaffold_4690:8228698-8228813 +

41.39

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT TCCGGTCAGG---GTTCCAATG-CGGCTG--ATGGCTCCCGTGTTGCTGCCACCCAGCGGATGTTGCTGCTGCGAG----TCGAGTGATGTTGCTCCCGTTGCT--------CCTGGTCCAGCCGCTGCAACGG	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
..........................................................................AG----TCGAGTGATCCTGCTCC.....................................	19	1	2.00	0.00	0.00	0.00	2.00
...................................CTCCAGTGTTGCGGCCAC.................................................................................	18	1	1.00	0.00	0.00	0.00	1.00

scaffold_4690:10639372-10639457 +

40.15

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT GTAATTGATGTTAGACCCA------------------------------------------------CGCTCCTCCTCCTCCTGCTCCTCCTTCTCCTCCTCCTGCTTCTCCTCCTCCTGCTCCTCCTCCTCCT	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.....................................................................CTCCTCCTCGTCCAGCTCCTCC...........................................	22	1	1.00	0.00	0.00	0.00	1.00

scaffold_4845:19628057-19628144 -

35.02

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCA---GCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT TATGCGG---CAAGCCTCCATGCTGAGCGCATAGTGTCTGCTGTTGCTGCTGTTGCTGCGG--CTGCTGCTGCTGCT---------GCTGCTGCTGCTGCTG-----------------------------------	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
...................................GTCTGCTxTTGCTGCTGAT...................................................................................	18	4	0.25	0.00	0.00	0.00	0.25
................................TGTGTCTGCTGTTGCTGCTGTTT..................................................................................	23	5	0.20	0.00	0.00	0.00	0.20

scaffold_4770:9987174-9987232 +

33.88

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
C------------------------------------------------------------------------TCTTCCGCCTGCTGCTCCTGCTCCTGCTCCTCCTCATCCTCTACCTCATCCTCCACC---T

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

droFic1 - 13 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000454111:160465-160601 +

73.14

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTT---CATCCTCCTCCGCAT
CATGTTGAGATCCGAACCGAAGGTGGGCGAAAGCGGCTGGGAGCATCCGTTGCTGGGGGAGTTCTGCTGCTCCTTCTCCGTCGGCTGCTGTGGCTCCTGGCCTTCCTCCTCCTCGTCCTCCGCCTCCTCCTCTTCAT

Size

Hit Count

Total Norm

scf7180000454050:599019-599147 +

62.12

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGG------GCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
C-----------CGACCAAACGGTCATCGACATGGAGGACACCTCGCAGCTGGAGGAGGCGTCCGGCTGCTGGTGCTGCTGCAGCTTGCGATGCTCCTGCTCGTCCTCATCCTCGTCCTCCTCTTCGTCCTCCTCCTCCT

Size

Hit Count

Total Norm

scf7180000453882:968502-968630 +

52.35

CATGTTTAGATCGGACCCAAAGGTG----GGCGACAAGGGCTGGGAG---------------CAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
AATCCTCAGGGGTGAACCCACCGTCGCTGGGCCTCTGGCGCGGCGAGTTCTTCAGCTTGGAGGAG-----------------CTGGAGCCGCTCTCC-------TCGCCCTCCGCCTCGCCCTCTCCTTCTCCCTCACCCTCGCCATCGCCGT

Size

Hit Count

Total Norm

scf7180000454073:828379-828513 +

51.68

CATGTTTA-GATC-GGACCCAAAGGTGGGCGACAAGGGCTGGG----AGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
CCAGTTACCGATCCAGATCCAGAGCCCGATCCCGCTCCCTGTACCGCCGCCCCCGCTCCT--CCGCCTCCT---CCTCCTCCTCCTCCTGCTCCTCCTGCTCCTCCTACTCCTCCTCCTCCTCCTCCTCCTCCTCCGCCT

Size

Hit Count

Total Norm

scf7180000454045:79355-79477 +

49.29

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGC-TCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
TCCACCAGCACCA----------CCAGCGCCGCTGACTG-TCGCTCCACCCGCTGGCGTTGC--CGAACCTATTTGGTACTCCAGCTGCCCGTGCTGCTGCTGCTCCTCATCATCGTCCTCGTCCTCCTCCTCCT

Size

Hit Count

Total Norm

scf7180000454038:413500-413593 +

48.22

------------------CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
GTGTGGAGCCGATGGTGGC----------------------------------------------------------TCCTCTGCTTCTACTTCTCCTCGTGCTCCTCCTGCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT

Size

Hit Count

Total Norm

scf7180000454073:3232376-3232497 -

47.24

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAG-TTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
CTCGTTCACG-CTGACGCGGATGCGAATGTCGCGGGCCATGTAATCCGGCCTGCCGGCTGTCGCCC---------CCACCTCCAGTCCCTCCTCCACC---CGCTCCTCCTCCCCCGCCTGCCCCTCCTCCTCGT

Size

Hit Count

Total Norm

scf7180000454073:3404717-3404851 +

43.61

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCT-----------------GGG----------------------------AGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
CATGGTCTGC--AGATCCTCCGGCGGGCACCACATGAGGTCCGTCTCCGTCAGCAGGGGCATGTCGTCGTCGATCGGGATGTAGGGAGCTCGCA----TGGCG------------AAGTCCTCGAAGGAGAACTCGTCCTCCTGGG--------------------------TCAGCGA

Size

Hit Count

Total Norm

scf7180000454050:471581-471693 +

43.44

CATGTTTAGATCGGACCCAAAGG---TGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
GCTGTTCAAGTGGGCGGAGGAGAGGGT----GGCG-CGGCTGTC-CAAGTGGCTGCTGGC---------CACCTCGTC---------CTCCTCGTCGTCCTCGTCCTCCTCCTCCTCGCCGTCGTCATCGTACACAG

Size

Hit Count

Total Norm

scf7180000453882:1088928-1089081 +

41.79

CATGTTT-AGATCGG-----------------------------ACC-------------------CAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
TGCGACTTCGATTGCGAATGCGATCGGTGGCTGGAACGTGGCATCCCCACCGATTGCGGCCTTTGGCAGTGGCGGCAGACAAA-----GGAGCGGTACTCGCTCTCGGAATCCT------------------------CGGAATCCTGATCCTCCTCCTCCCCATCCTCATCCTCCGCCTCCT

Size

Hit Count

Total Norm

scf7180000454111:623147-623301 -

39.92

CATGTTTAGATCGGACCCAAAGGTGGGC-----------------------GACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTG--------AAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACC-CTCCTCTTCCTCCGCTTCATCCTCCT--CCGCAT
TTCGTTTTATACGAATTGGAGGTTGAGCTGGAGTTCGAGGAGGAAGAAGAGGACGAGGACT-----------TCGACGACCG--TTCCGACTTGGACTTGCCGCTGCTGTGCGTATTGCTGTTGCCACCACCACCACCTCCTCCTCCGATTCCCACTCCCGTGGGCAG

Size

Hit Count

Total Norm

scf7180000454072:2683017-2683053 -

20.45

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
T-------------------------------------------------------------------------------------------------GTCCATCCGCCTCCGCCTCCGCATCCACATCCGCAT

Size

Hit Count

Total Norm

scf7180000453800:277121-277165 -

17.41

CATGTTT---AGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
TGCGAATGCGAGATCTGGT--GCGAGTGGGCGATCTGGTGCGAGTGC------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

droEug1 - 1 hit found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000409554:3760859-3760992 +

75.72

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
CATGTTTAAATCGGAACCAAATGTTGGTGAAAGAGGCTGGGAGCAGCCGTTGCTTGCGTTATTCTGCTGCTGCTCCTCCACTGGCTGCTGTTTCTCCTGACCTTCCTCCTCATCATCTTGGTCTTCATCAACAT

Size

Hit Count

Total Norm

droBia1 - 13 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000302422:2382746-2382879 -

71.31

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
CATGTTTAGGTCGGATCCATAGGTGGGAGAAAGGGGCTGGGAACAGTTGTTGCTGGCGAAGTTTTGCGGCTGCTCTTCCACCGGCTGCTGTTGCTCTTGACCTTCTTCCTCATCCTCCAGGCCCTCGGGGCCTT

Size

Hit Count

Total Norm

scf7180000302126:3833414-3833527 +

51.96

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCG---------GTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
GGCGGTAA-----------------------------TCGGAGCTCTCGTTGCTGTCCGTGTCCACGGCATTCTGCAGGTCGTCCTGCTCCTGCTCCTGCTCCTCCTGCTCCTGCTCCTCCTCCTCCTCCTCCGCCTCCGTTT

Size

Hit Count

Total Norm

scf7180000302126:3412040-3412163 +

51.88

CATGTTTA-GATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCA-----------GCAGTTGCTGGCGGTATTCTG---AAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
CATGTCGCAGGT-------------------------CCGTGGGCGTGAGGTCACTGCCCGTTGCCCTGCTGATGCTGCTGCTGCTGCTGCTGCTGGTGCTGCTCCTCCTCGTCCTCCTCCTCGTCCTCGTCGTAGTCCTCGTCCTCGT

Size

Hit Count

Total Norm

scf7180000301760:5562878-5563015 +

47.5

CATGTTTAGATCGGACCCAAAGG-TGGGCGA-----CAAGGG-----CTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCT----------CCGCTTCATCCTCCTCCGCAT
CGCCTGTTGCTGCTGCTGCAGGGGCGTGGTATTGCTGAAGGGCGATTGCGGAAGCAGCATTCC-----------------CTGCTGCTGCGCCTGTTGCTGTTGCGCCTGCTGTTGCTGCTGGTGGATGTGTCGTTGCTTCATCATCTCGCTCAG

Size

Hit Count

Total Norm

scf7180000298389:978357-978460 -

46.69

CA------------------------------------TGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
GCAGCGAGTACTGCTGGGTGGTGGCCATCGCGGCGTCCTCCTCGG------------------------------------------------------------------GTCCGCCTCCTGTCCCTCCTCCTGTCCCTCCTCCTGCCCCTCTTCCTCTTCCTCTGCCG

Size

Hit Count

Total Norm

scf7180000302126:3412344-3412454 +

44.78

CATGT---TTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATT-CTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
TCGCTGCTGCTGCTCGGCCGCAA----------------------------GTTGCTGCTGTTGCTGCTGCTGCTGTTGTTGCTGCTGCTGCTGCTGCTGCTGGTGCTCCTCCTCCTCCTCCTCGTCCTCCTCGTCGT

Size

Hit Count

Total Norm

scf7180000302428:990245-990329 -

40.91

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
-------------------------------------------------TTTCTGGTGGTAATCTCAAGCTGTTCTTTCTTATGATCTTTTTTCTCCTGAACCTCCTTCTTCTCTAGCAGAGTTTGATTCGCCT

Size

Hit Count

Total Norm

scf7180000302136:1430648-1430743 -

37.44

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
GCCGTCTCTTTCGCCGCTGCACTTGGTCCTGTTGCAGCAGCAGCAGCCGTTGCTGTTGTT-----------------------GTTGCTGTGGCTCCTGCCGCTGCTGTTCG---------------TCCTGAC

Size

Hit Count

Total Norm

scf7180000301703:265981-266084 +

37.35

CATGTTTAGAT----CGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
CTGGCTTTGCAGGGGCAGGGCCAG---------------------GG-------CGGCGGGCACATAGTTGGACTGCGACTTGGCGGACTGCTCCTCCGC------CTCGTCCTCGTCCCCCTCGTTTCCCTCGTCAT

Size

Hit Count

Total Norm

scf7180000301703:265374-265458 +

36.4

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
GCTGCGG---------------------------------------------CTG-C-GGCTTCTTCTGCTTCCTTTTCGCAGCCTGCTCCTCCGCTTGAGCCTCCTCC--TGGCGCTTCTTCTGCTGCTGTCG

Size

Hit Count

Total Norm

scf7180000301592:51768-51855 -

33.6

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGA---AGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
TT----------GCTGCTGCAGGTGGAGGCCCAAGTGCTGTTGGTGCAACTGGAG-----ATTCAGATGTTGCTGCTGCTGCTGGTGTTGCTGCTGCTGTTG-----------------------------------

Size

Hit Count

Total Norm

scf7180000302126:3411849-3411943 +

33.3

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
GCTGTTCAGGTGGGCGGAGGAGA--------------------------------------GGGTGGCGCGGCTGTCCAGGTGGCTGCTGGC-CACCTCGTCCTCATCCTCGTCGTCCTCGTCCTCCTCCTCGT

Size

Hit Count

Total Norm

scf7180000302155:1518459-1518519 -

21.42

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
GGG------------------CTCGTCCGAGAAGCACTTGTAGCAGGAGTTGCA---------CTTAAACGGCTTGTCCGTCTGGTG-----------------------------------------------

Size

Hit Count

Total Norm

droTak1 - 4 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000415385:189147-189283 +

72.44

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTG---CTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
CATGTTCAAATCGGAGCCAAAGGTGGGCGAAAGCGGCTGGGAACAGCCGTTGCTGGCGGAATCCTTGCCCTGCTCCTCCGCCGGCTGCTGTTCCGCCTCCTGACCCTCCTCCTCCTCCTCGAGGTCCTCGCCGCCGT

Size

Hit Count

Total Norm

scf7180000415254:707403-707516 +

53.79

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGC-------TGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
--------------------------GCGAGGAGCGCCGGGAGTAGACGCCACTGCTGGTCTCCGGCTGCGAGGTGGTGATCTGATC-CGGCTGATCGTGCTCCTCCTCATCCTCCTCCTCCTCGTTGCCCTCCTCCGCCT

Size

Hit Count

Total Norm

scf7180000415141:6702-6792 +

40.15

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGG-------------TTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
A-----------------------------------------------ATTGCTGGC--TATGCGTATGCCGCCGCTCGACTGATTGCCGCCCACAATTGCCGCTGCTCCAGCTGCTCCTCCTCCTCCGCCGGCTCCTCC-------

Size

Hit Count

Total Norm

scf7180000415281:45950-45989 +

25.0

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
----------------------------------------------------------------------------------------------TCCAGATCCTCCTCCTCCTCCTCGTCGTCCTCCTCCTCAT

Size

Hit Count

Total Norm

droEle1 - 15 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000490971:131834-131988 -

58.79

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCT---------------------CCGCTTCATCCTCCTCCGCAT
CATGTTTAGATCTGAGCCAAAGGTGGGTGAAAGTGGCTGGGAGCAGCCGTTGTTGGCGGAATTCGGCTGCTCCTCCTCCGCCGGCGGCTGTGGCTCCTGCCCTTCCTCCTCCTCCAAATCCTCCTCTTCCGGCTCCTCTTCATCCTCCTCCTCGC

Size

Hit Count

Total Norm

scf7180000490214:470090-470230 -

53.03

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAG--CAGTTGCTGGC---GGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGC----AT
CATCTGCGACTGCGACTGCC--GCTGGTGACGATAACTTTCGGCACTCTCGTTGCTGTCCAGGGCGTTCTGCAGGTCGTCCTGCTCCTCTTGCTCCTGCTCTTGCTCCTCCTCCTCCTCCTCTGCCTCCGCCTCTGGCTCCAG

Size

Hit Count

Total Norm

scf7180000491193:1590044-1590175 +

51.41

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCT-----CTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
-----TCAAATAGCACTCTTCAGAGCACGAAAGGGTTTTAAATACCCAAT---CAGCACTAGTCGCAAACTCACCATTTCGCTCGTGGGATCCTCGTCGTCGTGACCCTCCTCCTCCTCAAACTCGGCGCTCTCCGTAT

Size

Hit Count

Total Norm

scf7180000491272:1692349-1692500 -

46.46

CATGTTTAGATCGGACCCAAAGGTGGGCGAC-----AAGGGCTGGGAGCAGCAGTTGCTGGCGGTATT-CTGAAGCTGCT----CTT-----------CCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
TCCCGCTTGCTCCGAC--AACAGGGGCCGATCCTGCACTAGCT-GGCGCTCCAGTTGCCGCTCCTGTTCCTGCCGCTCCTGCCGCTCCCGGTACCGCACCGCCTCCTCCTCCTCCTCCTGATCCGCCTCCTCCGCCGCCTCCTCCTCCTCCTCCT

Size

Hit Count

Total Norm

scf7180000491013:1216931-1217075 +

46.11

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTAT--TC---------TGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGA---------CCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
CGCTCCT---------CCAGACGCTGGCGACTCCTGCTCAGGACAGCCGCCGCCTTGCTCATGATCTCATCGAAGTCTAGCTGCTCCTCCGGCTCCTTTTCCTGCTCCTGGAAATCCTCCTCCTCCTCCTCCTGCTCCTCTTCCTGCTCCTCCT

Size

Hit Count

Total Norm

scf7180000491080:2494314-2494440 +

45.75

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCT-GACCC---TCCTCTTCCT----CCGCTTCATCCTCCT-------CCGCAT
ACTCCTGC--TCC---------ATGCGCGAGCACAGCTGCACGTA-CTTCTGCTG--CATCTCGGCCAGCTGCTCCTGCATGGAGCGCAGCTGCGACTTGAGCGCGTTCTT----CTCCACCCGCTTC----TGCTGGATCTGCGGCGA

Size

Hit Count

Total Norm

scf7180000491087:107938-108050 -

43.44

CATGTTTAGATCGGACCCAAAGG---TGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
TGCAGCT-------GCCCGTTGTTGTTGCTCGGCCGCCAGTTGTTGCTGCTGCTGCTGCTGGTGCTGGGACACTGC-----------------CTCCTCCTGATCCTCCTCCTCGTCCTCTTCGTCCTCCTCGTCGT

Size

Hit Count

Total Norm

scf7180000491006:120717-120875 +

43.31

CA-TGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAG---CAGCAGTTGCTGGCGG---------------------TATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
CGGTGACCAGAACGAATTCATCCTCGTCATCCTCGGGCAGGGTGAGACCGCTGTCGCTGTCGCAACTGAAACCGATGCCATCGTCATATTCCTGATCCTCTGCCAGCTGCTGCTCCTCCTCCTCCGCCTCCTCCTCCTGCTCCTCGTCCTCCTCCTCCT

Size

Hit Count

Total Norm

scf7180000491001:416240-416318 -

40.15

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCC------TGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
-----------------------------------------------------------TCTTCTGCAGC--CTCTTCTTCGTCTTCGTCTTCCTCGTCGGCATCGTCCTCCTCCTCCTCATCTTCATCCTCCTCCGCCT

Size

Hit Count

Total Norm

scf7180000490996:931126-931276 -

38.1

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGC-------------------AGCAGTT---------------GCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
TCCGCCCGCACCGCCT-GGGACGCCGACGCCAACGCCCACGCCCGTTTGCTGCTTATTGAAGTAGTCGTTGATCTTCTTGTTGTCG-----------CTGACGGGGAGCATGAGGCGGGCGCTCTTGCCGCCG-----CCACTGCCGGAACCGGAACCGGCTCCGGAT

Size

Hit Count

Total Norm

scf7180000491044:1481231-1481295 +

28.79

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTG--------ACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
CAGCTCCATTTTGGGCCGCT-----------------------------------------------------------------------------TGGCCAGTGAGCGCTCCTCCTCCTCCTCCTCCTCCTCCTGCTCGC

Size

Hit Count

Total Norm

scf7180000491214:17838-17909 +

25.8

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAG-----------TTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
CTTGA--GTGTCTGAGCAGCCAGCGGATGATCAGACATGAGATTACCAGTGTTTCCCCCGTTGCCGCCGGCATT-----------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000491044:1476718-1476783 +

25.0

CATGTTTAGATCGGACCCAAAG-GTGGGCGACAAGGGCT-------GGGAGCA---GCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
CGTGCT-GGATGAGGCGCCAGGCGGAGGTGTAGCGGGTTTTGCACGTGGAGCAAGTGTAGTTGCTGG------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000491006:2842633-2842687 -

21.21

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
TGCGAGAAAAGCAGACCAAGACATGGAGCGATAGAACAAAGATCGG-GGTTGCGGT------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000491104:1305677-1305737 -

20.9

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
G------------------GGCTCGTCCGAGAAGCACTTGTAGCAGGAGTTGCAC---------TTGAACGGCTTGTCCGTCTGGTG-----------------------------------------------

Size

Hit Count

Total Norm

droRho1 - 2 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000780267:27189-27328 +

66.0

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCT---CTTCCGTGGGTTGCTCTTGCTCCTGACCCTC---CTCTTCCTCCGCTTCATCCTCCTCCGCAT
CATGTTAAGGTCCGAGCCAAAAGTGGGTGAAAGTGGCTGCGAGCAGCCGTTGTTGGCCGAATTCGGCTGCTGCTCCTCCTCCGCCGGCTGCTGTGGCTCCTGGCCTTCTTCCTCATCATTAGGCTCCCCCTCCTCTTCGT

Size

Hit Count

Total Norm

scf7180000780007:325147-325266 +

51.52

CATGTTTA-GATCGGACC-CAAAGGTGGGCGACAAGGGC--------------TGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
GATGACGATGTTGGCACCTCCAAGTTGGCAGACAACGCCGCTGCTGCACCACTTTGTTGCTGCTGCTGGTGATCGCTTGTTGTTGCTGCTGCAGTTGGGGTTATTGTGGCTGTTGACGCT------------------------------

Size

Hit Count

Total Norm

droKik1 - 4 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000302472:2579939-2580081 -

57.53

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCT----GCTCTTCCGTGGGTTGCT------CTTGCTCCTGACCCTCCTCTTCC---------------TCCGCTTCATCCTCCTCCGCAT
CATGTTTAGATCGGAACCAAAGGTGGGCGACAGGTTCTGCCCGCA----------------GTCGGAGGCCTCTTTCTCCTCCTCTGGCTTCTCAGAGTCTTCCTCCTGATTATCCTCCACCTCATCACCCTCTGCCTCAGGATCTTCCACTTCATCCT

Size

Hit Count

Total Norm

scf7180000302621:131324-131448 -

45.91

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGA------AGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
ACCACCTGCTCCTGATCC-----AGCACCTCCTGGGCCACCGCCTCCAACCACTAGGGATACACCACCTCCGTTGCC--------GCCGCCCACAGAGCCTGCTGCTCCTCCTCCTCCTCCGCCTCCTACTCCC--ACGC

Size

Hit Count

Total Norm

scf7180000302414:709045-709114 -

37.68

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTC---CTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
-------------------------------------------------------------TGCTGATGCTGCTGCCC------TTGCTCCTGCTCTGGCTCATCCTCCTCCTCCTCCTCATCATCCTCGTCCTCAT

Size

Hit Count

Total Norm

scf7180000302441:958735-958765 -

13.64

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
-------------------------------------------------------------------------------------------------------TTTTCGTCTTCAGCTTTGTCTTCATTTTCAG

Size

Hit Count

Total Norm

droAna3 - 5 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_13117:2651271-2651404 -

56.39

CATGTTTAGATCGGACC--CAAAGGTGGGCGA--CAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT CAGCATTAGGGCGATCCTCCGCCAGTGGTTGATCGAAGGCATGGGATCCACC----CCAGCGTCTATCTGAAAACGATGTTTATCCACCTGCTCCTGCTCCTGCTCCTCATCCTCCTTCCCTTCGTCTTCGTCATCAT	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
..................................GAAGGCATGGGATCAACG----C.................................................................................	19	1	1.00	0.00	0.00	1.00	0.00
................................................................................................GCTCCTCCTCCTCCTCCTCC......................	20	21	0.05	0.00	0.00	0.00	0.05

scaffold_13117:3296463-3296598 +

54.08

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATT----------------------------------CTGAAGCTGC---------TCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT CAAGT----------------------------------GGTGCAGGCAATGGTGGCACTACTGATGTTGCCGCTGCAGCTGATGTTGCAACTGGTACTGCTGCTGCTGCTGCTGATGTTGCAA---CTGCTGTTGTTGTTGCTGTTGCTCCTCCTCCGCTTCCTCCACCTCC----	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
.................................................................................................................................GCTGTTGTTGTTGTTGTTGCT...........................	21	45	0.04	0.00	0.04	0.00	0.00
...................................................GGTGGGACTACCGATGTTGC..........................................................................................................	20	2	1.00	0.00	1.00	0.00	0.00
...................................................................................................................................................GCTCCTCCTCCTCCTCCTCC..........	20	21	0.05	0.00	0.00	0.00	0.05
.......................................................................................GGAACTGGAACTGCTGCTGC......................................................................	20	12	0.08	0.00	0.08	0.00	0.00
...............................................................................................TACTGCCTCTGCTGCTGCT...............................................................	19	50	0.02	0.00	0.02	0.00	0.00
............................................................ACTGATGTTGCGGCTGAAG..................................................................................................	19	2	0.50	0.50	0.00	0.00	0.00
...GT----------------------------------GGTGAAGGCATTGGT...........................................................................................................................	17	2	0.50	0.00	0.00	0.50	0.00
............................................................................................................GCTGCTGGTGTTGCAA---TTGCTGTTG.........................................	25	11	0.09	0.00	0.09	0.00	0.00

scaffold_12916:14589365-14589483 +

51.52

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCT------TCATCCTCCTCCGCAT CATGTTCAGATCGGAGCCAAAAGTGGGTGAAAGCTGCTGGGAGCAGTTATCGC---------------------CCTCAGCTTGTTCCTTTTCCTCAGTATCCTCGTCTGCCTCCTCTGTTTCCCCATCTTCGTTCTCGT	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
...............................AGCxCCTGGGAGCAGTTATC.........................................................................................	19	1	1.00	1.00	0.00	0.00	0.00

scaffold_13335:2466083-2466202 -

47.46

CATGTTTAGATC--GGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT CTCGTCCGGGTTGCCATTCCCGGTATAGTCCTCTTGGGCAGAGCACCATTAACTCCACCGCCA-CC------TGCTC---------CTGTTCCTGCTCCTGATCCTCCTCCTCCTCCTCCTCCTGCTCCTGTTCCT	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
......................................................................................................................................CA	21	4	22.50	9.25	11.25	1.00	1.00
......................................................................................................................................CC	21	3	22.33	11.00	9.67	1.67	0.00
.......................................................................................................................................C	21	6	5.67	3.50	1.83	0.33	0.00
.......................................................................................................................................C	20	6	3.83	1.83	1.83	0.17	0.00
......................................................................................................................................TC	21	6	0.83	0.33	0.33	0.17	0.00
......................................................................................................................................CC	21	4	1.25	0.50	0.75	0.00	0.00
......................................................................................................................................AC	21	6	0.67	0.00	0.50	0.17	0.00
....................................................................................................................................TGCA	21	5	0.60	0.60	0.00	0.00	0.00
.......................................................................................................................................A	20	4	0.75	0.50	0.25	0.00	0.00
.......................................................................................................................................C	21	6	0.50	0.50	0.00	0.00	0.00
......................................................................................................................................CC	21	3	1.00	1.00	0.00	0.00	0.00
.......................................................................................................................................C	21	7	0.29	0.14	0.00	0.14	0.00
......................................................................................................................................TA	21	5	0.40	0.00	0.40	0.00	0.00
......................................................................................................................................CA	21	4	0.50	0.00	0.50	0.00	0.00
......................................................................................................................................CA	23	3	0.67	0.00	0.67	0.00	0.00
......................................................................................................................................CA	21	4	0.50	0.50	0.00	0.00	0.00
.......................................................................................................................................C	19	6	0.33	0.33	0.00	0.00	0.00
.......................................................................................................................................A	21	4	0.50	0.25	0.25	0.00	0.00
.......................................................................................................................................C	22	6	0.33	0.17	0.17	0.00	0.00
.......................................................................................................................................C	21	6	0.33	0.00	0.33	0.00	0.00
......................................................................................................................................CC	21	3	0.67	0.33	0.33	0.00	0.00
.......................................................................................................................................C	20	6	0.33	0.33	0.00	0.00	0.00
.......................................................................................................................................C	23	3	0.33	0.33	0.00	0.00	0.00
......................................................................................................................................CC	21	3	0.33	0.33	0.00	0.00	0.00
.......................................................................................................................................A	21	8	0.13	0.13	0.00	0.00	0.00
....................................................................................................GCTCCTCCTCCTCCTCCTCC................	20	21	0.05	0.00	0.00	0.00	0.05
......................................................................................................................................CC	22	3	0.33	0.33	0.00	0.00	0.00
......................................................................................................................................CA	21	4	0.25	0.25	0.00	0.00	0.00
......................................................................................................................................CA	21	4	0.25	0.25	0.00	0.00	0.00
.......................................................................................................................................A	23	3	0.33	0.00	0.00	0.00	0.33
......................................................................................................................................CA	21	4	0.25	0.25	0.00	0.00	0.00
..........................................................................................................GCTCCTCCTCCTCCTCCTCC..........	20	21	0.05	0.00	0.00	0.00	0.05
.......................................................................................................................................A	20	4	0.25	0.00	0.25	0.00	0.00
.......................................................................................................................................C	21	6	0.17	0.17	0.00	0.00	0.00
.....................................................................................................................................ACC	21	3	0.33	0.33	0.00	0.00	0.00
.............................................................................................................GCTCCTCCTCCTCCTCCTCC.......	20	21	0.05	0.00	0.00	0.00	0.05
......................................................................................................................................CC	21	3	0.33	0.33	0.00	0.00	0.00
......................................................................................................................................CC	21	4	0.25	0.00	0.00	0.25	0.00
.......................................................................................................................................A	21	4	0.25	0.00	0.00	0.00	0.25
......................................................................................................................................CA	21	5	0.20	0.20	0.00	0.00	0.00
.......................................................................................................GCTCCTCCTCCTCCTCCTCC.............	20	21	0.05	0.00	0.00	0.00	0.05
.......................................................................................................................................A	19	4	0.25	0.25	0.00	0.00	0.00
.......................................................................................................................................A	20	4	0.25	0.25	0.00	0.00	0.00
......................................................................................................................................CC	21	3	0.33	0.00	0.33	0.00	0.00
......................................................................................................................................CA	19	4	0.25	0.25	0.00	0.00	0.00
......................................................................................................................................CC	21	4	0.25	0.00	0.00	0.25	0.00
......................................................................................................................................CC	21	3	0.33	0.33	0.00	0.00	0.00
......................................................................................................................................CA	19	5	0.20	0.20	0.00	0.00	0.00
.......................................................................................................................................A	21	5	0.20	0.20	0.00	0.00	0.00
......................................................................................................................................AA	21	5	0.20	0.00	0.20	0.00	0.00
......................................................................................................................................CA	21	4	0.25	0.25	0.00	0.00	0.00
......................................................................................................................................GC	21	6	0.17	0.00	0.00	0.17	0.00
..............................................................................................GCTCCTCCTCCTCCTCCTCC......................	20	21	0.05	0.00	0.00	0.00	0.05
......................................................................................................................................CC	22	3	0.33	0.33	0.00	0.00	0.00
....................................................CTCCAACGCCA-CC------TCCTC---------..................................................	18	1	1.00	0.00	0.00	0.00	1.00
.......................................................................................................................................A	20	4	0.25	0.00	0.25	0.00	0.00

scaffold_13266:5025120-5025168 -

27.27

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT -------------------------------------------------------------------------------------TGCTCATGCTCATCCTCATCCTCCTCCTCCTCCTCCTCCGCTTCCGCTT	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
.................................................................................................................CCTCCTCCTCGGCCTCCGC..	19	3	0.33	0.00	0.00	0.33	0.00
.........................................................................................................CTCCTCCTCCTCCTCCACCGC........	21	3	0.33	0.00	0.00	0.00	0.33
............................................................................................GCTCCTCCTCCTCCTCCTCC......................	20	21	0.05	0.00	0.00	0.00	0.05
........................................................................................................GCTCCTCCTCCTCCTCCTCC..........	20	21	0.05	0.00	0.00	0.00	0.05
.....................................................................................................GCTCCTCCTCCTCCTCCTCC.............	20	21	0.05	0.00	0.00	0.00	0.05
..................................................................................................GCTCCTCCTCCTCCTCCTCC................	20	21	0.05	0.00	0.00	0.00	0.05
...........................................................................................................CCTCCTCCTCGGCCTCCGC........	19	3	0.33	0.00	0.00	0.33	0.00

droBip1 - 5 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000396572:2390673-2390782 -

44.15

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
CATGTTCAGGTCGGAGCCAAAAGTGGGTGAAAGCTGTTGCGAGCA------------------------ATTATCTCCCTCTACTACATCCTTCTCCTCAGTATCCTCATCGTCCTCCACATCTTCATTCTCTT

Size

Hit Count

Total Norm

scf7180000396543:349079-349155 -

43.75

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
C----------------------------------------------------TGGAGGTCTGCTGCTGCTGCTCCTCCAC---TTGCTCCTGCTCCTGTTGCTCCTCCTCCTCCTCTACCTCCTCCTCCTC--

Size

Hit Count

Total Norm

scf7180000396409:10637-10741 +

40.15

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCT--CTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
GGCGTAAGGGGAGAACAGGGAGGCGGGCATTAGCTGCAGGATCTGGCCGTCGCTAGTGGTGATCTGGTGGTGGTTGCCCGCCGGATAGCCCGCCGCTCCGGATCC-------------------------------

Size

Hit Count

Total Norm

scf7180000396022:3412-3512 +

38.26

CATGTTTAGATCGGACCCAAA---GGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCC---TCTTCCTCCGCTTCATCCTCCTCCGCAT
GCTGTTCAAGTGGGCCGAGGAGAGGGTGGC------------------CCGGCTGCTGGCCGCCT------------CG---------TCCTCTTCCTCCTCATCGTCCTCGTCGTCGTCGGCGTCGTCCTCGTCCTCGT

Size

Hit Count

Total Norm

scf7180000396409:14215-14246 +

18.18

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
C------------------------------------------------------------------------------------------------------TCCTCCTCCTCCGCCTGCTCCACCGCCGCTG

Size

Hit Count

Total Norm

None

dp4 - 8 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

chr3:14693225-14693346 -

59.32

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCT------GCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT------ CATGTTCAGATCCGATCCAAATGTGGGGGACAAGGGCTGGGAACAGCCATTGCTCTGAGTGATGTGCTGCTCCTCCCGCTCTCCCGTTGGCAGTTC------------------------CTCATCCTCCTCGTCCGGGTCTAGTT	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
.............................................................................................CTC------------------------GTCATCCTCCTCGTCCG.........	20	2	0.50	0.50	0.00	0.00	0.00

chrXL_group1e:5102945-5103074 +

53.25

CATGTT-TAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT GCCGCTGCCACTGCCACCCGCTGCTGCTGCTCCTGCACTAGATGCACCAGATGCACCAGA-----TGCACCTGCTGCTCCTGCGGCTGCTGCTGCTGCTGCGCCCTGCCCTGCTCCGCCTCCTCCTCCTCCTCCT	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
.......................................................................................................................TCCTCCTCCGCCTCCT	20	2	0.50	0.00	0.50	0.00	0.00

chrXL_group1a:2562609-2562734 -

46.01

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGG-----GAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT CT------GGCCCGGCTCAAATGCTGCTGGGAGGAGCTGATGGACGAGGAGGATTCGCGATCCCGATCCCGATCCCGGTCT---CTATCCCGCTCTCGCTCCCGT----TCTCTGTCTCTGTCTCGATCCCTTTCTCGT	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
....................................................................................................CTCGG----TCTCTGTCTCTGT.................	18	11	0.09	0.00	0.00	0.09	0.00
..................................AGCTGAGGGCCGAGGAGGA......................................................................................	19	1	1.00	0.00	1.00	0.00	0.00

chrXR_group6:8080393-8080508 -

43.56

CATGT-TTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTC---TGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT CACGCGCTGGAATGGA-ATGAACATGGGACGCAGGGGCTCGGAA------------------TCCTCGTCAGAGTCCTCCTCCTC---CTCCCGCTGCCGCTTGGCCTCCTTCTCCTCCCGACTGGCCTCGTCTCCGC	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
.............................................................................TCCTCCTC---CTCCTGCTGCTGC.....................................	21	17	0.06	0.06	0.00	0.00	0.00
.......TGGAATGGA-AAGAACATGGGAG............................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.......TGGAATGTT-ATGAACATGGGA.............................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
..........................................................................TCCTCCTCCTC---CTGCTGCTGC........................................	21	17	0.06	0.06	0.00	0.00	0.00
...............................................................................CTCCGA---CTCCCGCTGCCG......................................	18	2	0.50	0.00	0.00	0.50	0.00

chr4_group3:9003602-9003679 -

38.64

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
C--------------------------------------------------------GACCTCCTTCTGCTACTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

chr2:28341957-28342125 -

36.97

CATGT-TTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAG------CAGCAGTTGCTGGCGGTATTCTGAAGCT--------------------------------GCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT CCCGCATTCGGTTTGTGCCTCTGCAGCGTGGCCGTGGCCGGGATGCTGGGCAACA---GCTTGC-GCATGCTAGAGCCATGCGGCAGGGTGCCTCCCATCACGCCCTGTCCCTGGCCCGGGGCCTGGCCCTGCCCCTGACCCTGCTGTTGCCCCTGCTGCTGCCCCTGCCCCT	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
...............................................................................................................CTGGACCGGGACCTGGCCC...........................................	19	1	3.00	0.00	0.00	1.00	2.00
...................................................................................................................................GCCCCTGCCCCTGCCGTTGCC.....................	21	2	0.50	0.00	0.50	0.00	0.00
............................TGGCCGTGGACGGGATTCTG.............................................................................................................................	20	1	1.00	0.00	0.00	1.00	0.00

chr2:29214000-29214156 +

35.53

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGG--CGGTA--TTCTGAAGCTGCTCTTCCGTGGGTTGCTC------------------------------TTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT CACTCGGACTCCTGCTCCATGCGGGTGCA-----------CAGCTGCACGTACTTCTGCTGCATCTCGGCCAGCTGCTCCTGCATCGAGCGCAGCTGCGACTTGAGGGCGTTCTTCTCGACGCGCTTCTGCTGGATCTGCGGCGACTCCAGCTCGTTCGACTGCTCGC	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
............................................................................................................................CTGCTGCTGGATCTGCTGCG........................	20	4	0.25	0.25	0.00	0.00	0.00

chrXL_group1e:11156026-11156104 -

31.5

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTG-AAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT CACTTTTGGATCTGGC----------------GGCGATGGATGTTGTACTTGCGGGCGGTAGCCCGCTGGTTGCCCTTGCAGTCATTGTCATTGC----------------------------------------	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
...TTTTGGATCTGGC----------------GGTGAG.................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00

droPer1 - 7 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

super_4:2921871-2921992 +

59.32

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCT------GCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT------ CATGTTCAGATCCGATCCAAATGTGGGGGACAAGGGCTGGGAACAGCCATTGCTCTGAGTGATGTGCTGCTCCTCCCGCTCTCCCGTTGGCAGTTC------------------------CTCATCCTCCTCGTCCGGGTCTAGTT	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
............................................................................................GTTC------------------------CTGATCCTCTTCGTC...........	19	1	1.00	0.00	0.00	0.00	1.00	0.00

super_21:1446693-1446832 -

49.11

CATGTTTAGATCGGACCCAAAGGTGGGCGA----CAAGGGCTGGGAGCAGCAGTTGCTGGCG----GTATTCTGAAGCTGCTCTTCCG---TGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT CTTTTGCTCCACGGCTCCAGAGGCTGAGGCAGAGCCGGGGCCGGAGGCGGAGGCGGAG-GCGTCACG-TCTTTGATAGAGATCTAGCGGCATGGGTGTG---TCCTCCTCATCGTCCTCGTCATCATCCCCAACATCCTCAATGT	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
................................................................................................................CGTCCTCGTCATCGTCGC...............	18	4	0.50	0.00	0.00	0.00	0.00	0.50
.............................................................................................................CATCGTCATCGTCATCGTC.................	19	8	0.25	0.00	0.00	0.00	0.00	0.25
..................................................................................................G---TCCTCTTCATCGTCGTCGTC.......................	21	2	0.50	0.00	0.00	0.00	0.00	0.50
..........................................GGAGGCGGAGTCGGAG-GT....................................................................................	18	3	0.33	0.33	0.00	0.00	0.00	0.00
...............................................................................................................TCATCGTCGTCATCATCCC...............	19	1	1.00	0.00	0.00	0.00	0.00	1.00
.......................................GCAGGTGGCGGAGGCGGA........................................................................................	18	2	0.50	0.00	0.50	0.00	0.00	0.00
........................................CCGGAGGCGAAGGCGGCG-......................................................................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
.........................................CGGTGGCGGAGGCGGCG-GC....................................................................................	19	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................GCCGGAGTCGGAGTCGGA........................................................................................	18	2	0.50	0.00	0.00	0.00	0.00	0.50
.........................................AGGGGGCGGAGGCGGAG-G.....................................................................................	18	3	0.33	0.00	0.00	0.00	0.33	0.00
...................................AGGGGGCGGAGGCGGAGG............................................................................................	18	3	0.33	0.00	0.00	0.00	0.33	0.00
.............................................................................................................CATCGTCATCGTCATCACC.................	19	5	0.20	0.00	0.00	0.00	0.00	0.20
..................AGAGGCAGAGGCAGAGAC.............................................................................................................	18	6	0.17	0.00	0.00	0.00	0.17	0.00
.......................................GGCGGTGGCGGAGGCGGA........................................................................................	18	2	0.50	0.50	0.00	0.00	0.00	0.00
..........................................GGAGGCGGAGGCTTAG-GCGT..................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
....................................GGAGGCGGAGGCGGAGGCGGAG-GC....................................................................................	24	1	1.00	1.00	0.00	0.00	0.00	0.00
............GGCTCCxGAGGCTGAGGCC..................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
..........................................GGAGGCGGAAGCGGTG-GC....................................................................................	18	2	0.50	0.50	0.00	0.00	0.00	0.00
...........................................GAGGTGGAGGCGGAG-GCGGC.................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
...........................................................................................................CACCTCGTCCTCGTCATC....................	18	2	0.50	0.00	0.00	0.00	0.00	0.50
.....................................GGGCAGGTGGCGGAGGCG..........................................................................................	18	1	1.00	1.00	0.00	0.00	0.00	0.00
.......................................GACGGAGGCGGAGGCGGAG-ACG...................................................................................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
.........................................CGGAGGCGGAGGCGGAT-T.....................................................................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................GGCGGAGGCGGAGGCGGAG-GC....................................................................................	21	2	0.50	0.00	0.00	0.50	0.00	0.00

super_30:881113-881247 -

47.13

CATGTTTAGATCGGACCCAAAGGTGGGC-G-------ACAAGGGCTGGGAGCAG-CAGTTGCTGGCGGTATTCTGAAGCTGC--TCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCT-TCCTCCGCTTCATCCTCCTCCGCAT CATTTTGT--TGGGGGCCAGGATTTGGCCCATTCCCGGCTC-------AATCTGAATGGTGCTGTTGTTGTCCTGGATCTGTCTGCTCCAGCTGTTGGTTACTGCTCCCGATCCGGCTGCACTGTGCACTGCTGCCGATGCTG--C	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.............................................................GTGTTGTTGTCCCGGATCTG.................................................................	20	1	2.00	2.00	0.00	0.00	0.00	0.00
......................................................................TCATGGATxTGTCTGCTCC.........................................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
.....................................................................GTCCTGGATCTGTCTGCT...........................................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
.....................................................................GTCCTGGATCTGTCTGCC...........................................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
................................................................................................................................CTGCTGCCGATGCTG--C	19	12	0.08	0.00	0.00	0.00	0.08	0.00

super_30:579128-579274 +

40.18

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTC-----------------------------------------------------------CTCCGCTTCATCCTCCTCCGCAT CGACTCCGG-----------------------------------------------CCGCCGAGTGGGGCTGCGTGCGAAGTGGCTGCTGTAGCTACTGTGCTTGCTCTGCTCGATGGCCGTGGCCGTCGCCGTGGCAGTGGCCGTGACGCTCTGGCAATTCTGGGCGGCTGCCGCGGCATACAGAAGCGAGG	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.....................................................................................................GTTGCTCTGCTCGCTGGCC.........................................................................	19	1	2.00	0.00	0.00	0.00	0.00	2.00
....................................................................................................................CGCCGTCGCCGTCGCCGT...........................................................	18	7	0.29	0.00	0.00	0.00	0.00	0.29
....................................................................................................................................GTGGCAGTxGCGGTGACGC..........................................	18	2	1.00	0.00	0.00	0.00	1.00	0.00
.....................................................................................................GTTGCTCTGCTCGCTGGC..........................................................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
......................................................................................................TTGATCTGTTCGATGGCC.........................................................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
....................................................................................................................................GTGGCAGTxGCCGGGACGC..........................................	18	2	0.50	0.00	0.00	0.00	0.50	0.00
...................................................................................................................TCGCCGTCGCCGTCGCCG............................................................	18	5	0.20	0.00	0.00	0.00	0.00	0.20

super_16:1801800-1801914 -

38.36

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGG----------CTG--------------GGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT GAGAGGTTGCCAGG-----------------AAGGATGGCCTCCCGTTGAGAGCGTCCCCCGACGCGCCGGAGCTGCTGGTGGCAGGC----------------------GGTCCTCCTTCTCTCCAGTGTCCTCCTAAGTGTTATTCTTTTTC----	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
..................................................................GTCGCAGCTGCTGGTGGC..........................................................................	18	1	3.00	0.00	0.00	0.00	0.00	3.00
.................................................................CGCCGGAGCTGGTGGTGGGAG........................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
...................................................................CCGGAGCTGGTGGTGGGA.........................................................................	18	1	1.00	0.00	1.00	0.00	0.00	0.00
........................................................................GCGGCGGGTGGCAGGC----------------------GGT.............................................	19	1	1.00	1.00	0.00	0.00	0.00	0.00
...............................................................CGCGCCxGAGCAGCTGGTGGCA.........................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
..................................................................GCCGGAGCTGCTGGAGTC..........................................................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00

super_17:1860013-1860060 -

25.76

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT GG--------------------------------------------------------------------------------------TCTGGCTGCTACTCCTCCTCCACCACCACCTCGTCCTCCTCCTCCT	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
..................................................................................................................CTCCTCGGCCTCCTCCTC..	18	2	0.50	0.00	0.00	0.00	0.00	0.50
..................................................................................................................CACCTCGTCCTCGTCATC..	18	2	0.50	0.00	0.00	0.00	0.00	0.50

super_17:1868037-1868050 -

6.06

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
CTCGTTGGCAGCGG------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

None

droWil1 - 1 hit found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_180708:9012130-9012236 -

43.55

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
CATGTTTAAATCTGAACCAAATGTGGCCGACAATGGTTGAGAGCAGC---------------------------CATTTGTTAGTTGTTCATCCTCTTCACAGGCTCCAGCAGCTTGCTCACCCCCCTCAGCGT

Size

Hit Count

Total Norm

V117
Male body

V118
Embryo

V119
Head

M020
Head

droVir3 - 3 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_12963:15905405-15905563 -

48.56

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAG---GGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCT---------TCCGTG----------------------------------------GGTTGCTCTTG-CTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT CATGTTTAAATCGGAGCCATAGGTAGCCGACAATGCCGGCTGCGAGCAGCCATTGCTTAGGGTTATCTGCGGCTTCTGTGGTGCCTGTTCCGTTGCGTTAATCGGCTGGGAGTAGAGCTCACCGGCGGCCTCCAGATCGCTGTCGCCTCCT----------------------------GTCGCGAT	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
...............................................................................................CGTTAAACGGCxGGGAGTA.........................................................................	18	1	1.00	1.00	0.00	0.00	0.00	0.00
......................................................................................................CGGCTGAGAGGAGAGCTC...................................................................	18	1	1.00	0.00	1.00	0.00	0.00	0.00
..............................................................................................GCGTTAAACGGCxGGGAGT..........................................................................	18	1	1.00	1.00	0.00	0.00	0.00	0.00
.......................TAGGCGACAATGCCGGCTTC................................................................................................................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
.....................................................................................................................CTCGCCGGxGGCCTCCA.....................................................	16	1	1.00	0.00	1.00	0.00	0.00	0.00

scaffold_12875:2076082-2076184 +

48.48

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTG---GCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCC-TCCGCAT
GCGGCAA-----------------------------------GTCGCTGTAGCGAAAGGCAATGCGCAGCCCATTCTTATCCGCCGGCTGCTCTTGCTCCTGGCGCTGCTCCTGCTCCACCTCCTCGTCGGTCAGCGG

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

scaffold_13042:2022022-2022176 +

38.66

C----ATGTTTAGATCGGAC--CCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATT----------------CTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCG----CTTCATCC---TCCTCCGCAT TGCTGCTGCTGCAATTGGAACTGCAACTGTTGCTGC--------TGCAGCTGCAGCTGTTCGCGTTGTTGCTGCTGTCGCTGCAGCTGCAACTGTTGCTGCTGCAGCTGCTGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGTCCATGTTGGTCTTCTTTAG	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
...........................................................................TTCGCTGCAGCTGAAACT......................................................................	18	6	0.50	0.00	0.00	0.00	0.17	0.33
..CTGCAGCTGCAACTGGAACTG............................................................................................................................................	21	8	0.13	0.13	0.00	0.00	0.00	0.00
..............................................................................................................................GCTGCTGCAGCTGGTGGTC..................	19	22	0.05	0.00	0.00	0.00	0.05	0.00
................................CTGA--------TGCAGCTGCAGCGGTTC......................................................................................................	21	5	0.20	0.00	0.20	0.00	0.00	0.00
..................................................................................CAGCTGCGACTGTTGCGG...............................................................	18	20	0.05	0.00	0.00	0.00	0.05	0.00
............AACTGGAACTGCAACTGC.....................................................................................................................................	18	16	0.06	0.00	0.00	0.00	0.06	0.00

droMoj3 - 11 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_6500:3051871-3052002 +

57.34

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAG--CAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTC-------CTCCGCAT CGTGCGTAGCT---GCTCGTGGCTGGGTGGCGTGGCATTGTAGAGTCTCAGCTGCTG--------CTGCTGCTGCTGCTCAGACTCCTGCTCTTGCTCATGCCCCTCCAGCTCCTCCTCTTCAGCCTCGCTGTCGCTCAGCGG	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
....................................................TGCTG--------CTACTGCTGCTGCTCGGA............................................................	23	10	0.10	0.00	0.00	0.10	0.00
..............................................CTCAGTTGCTG--------CTGCCGCT......................................................................	19	20	0.05	0.00	0.05	0.00	0.00

scaffold_6500:18910673-18910815 -

50.58

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCT---------CTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT CATGTTCAGGTCGGAGCCGTAGGTTGCCGAAAGAGGCTGCGAGCAGCAGTCGCCCAAGGTTTGCAGTTGCTTCTGTGGCGCTGGCTCGGCCGCTTTGATTGGCTGCGAGTAGAGCTCGTCAGCTGCCTCGGCGTCCAGATCGC	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
..........................................GCAGCAGTCGACCAAAGTT..................................................................................	19	1	1.00	1.00	0.00	0.00	0.00

scaffold_6680:12855291-12855423 +

50.33

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTT--GCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTC----------------------------------------CGCAT CGA----------------------------------------CAGCAGCCGAGGCGGCGGCGTTCTGTTGCTGCTGCTGCAC---CTGCTGCTGCTGCTGTTGCTGCTGCACCTGCTGTTGCACCTGCTGCACCTGTTGCTGCTGCTGCTGTTGCTGTTGCTGCTGCCGGCGCAC	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
CGA----------------------------------------CAGCAGCAGAGGCCGC.....................................................................................................................	19	10	0.10	0.10	0.00	0.00	0.00

scaffold_6680:17718912-17719051 -

48.13

CATGT--TTAGAT------------CGGACCCAAAGGTGGGCG-------------------------------------ACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT CAAATGCCCGAGTCGTGCAGCACACTGGACATGGAAACGGAGCACGAGTTGTTGCTGTTGCCGCTGTTGCTGTTGCTGTTACAGAGCATTGCAGCAGCAGTTGCCACCGCTGTCACGCCGTTGCC---------------------------------------------CATCGTGCTCATCGT	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
........................................................................................................................................................................................A	22	5	3.00	2.80	0.20	0.00	0.00
........................................................................................................................................................................................A	21	5	0.60	0.60	0.00	0.00	0.00
........................................................................................................................................................................................A	25	5	0.40	0.40	0.00	0.00	0.00
........................................................................................................................................................................................A	24	5	0.40	0.40	0.00	0.00	0.00
..............................................................................................................TGTCACGCGGTAGCC---------------------------------------------C..............	16	1	1.00	0.00	1.00	0.00	0.00
........................................................................................................................................................................................A	25	5	0.20	0.20	0.00	0.00	0.00
........................................................................................................................................................................................A	24	5	0.20	0.20	0.00	0.00	0.00
..........................GGAGATGGATACGGAGCAC............................................................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00
...........................................................................................CAGCAGCAGTCGCCACCAC...........................................................................	19	5	0.20	0.20	0.00	0.00	0.00
.................................................TGTTGCTGTTGGCGGTGTTG....................................................................................................................	20	13	0.08	0.00	0.08	0.00	0.00
........................................................................................................................................................................................A	22	5	0.20	0.20	0.00	0.00	0.00
..................................................GTTGCTGATGCCGGTGTT.....................................................................................................................	18	35	0.03	0.03	0.00	0.00	0.00
........................................................................................................................................................................................A	22	5	0.20	0.00	0.20	0.00	0.00

scaffold_6500:25313112-25313230 -

48.03

CATGTTTAGATCGGACCCAAA-----GGTG---------GGCGACAAGGGCTGGGAGCAGCAGTTGCTG-----GCGGTATTC-TGAAGCTGCTCTTCCGT-----GGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT CAG---TAGGCGGCAGCCAGGCCATTGCTCAGCAGCAGCGGCGGC--GAGCCGGCAGCGGCAGCTGCTGCTGCTGCGGCATTCATCATGTTGACGTTCAGCTGCAACTGTTGCTGTTGCTGCTG-----------------------------------	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.........................................................................TGCGGxATTCATCACGTTGACG................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..............................AGCAGCAGCGGCGGC--GGGCGGG.........................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
................................CAGCAGCGGCGGC--GxGCCGGCGG......................................................................................................	22	14	0.07	0.00	0.00	0.07	0.00
...........................CTCAGCAGCAGCGGCGGC--................................................................................................................	18	7	0.14	0.00	0.14	0.00	0.00

scaffold_6473:4939960-4940088 +

45.74

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGC---TGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT CGTGCCCGCCACGGGGCCAACAGTTA--CGCTGTTGCTGGCAGCGGCGGCTGCTGCTGCTGCTGC--AGCCGCTACAGCTGCAC-TATTGCTGTTGGCGCTAAGCACACTGTGCGC---GCTGAGATTTGTGGGCAG	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.......................................GCAACGACGGCTGCTGCTG...............................................................................	19	17	0.06	0.00	0.00	0.00	0.06
.........................................AGCGGCGGGTTCTGCTGC..............................................................................	18	3	0.33	0.00	0.00	0.33	0.00

scaffold_6473:1409855-1409960 -

44.52

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
---GCTTCGATGGCACCTGTGG-------------------------GGCTGCACGC-GTCACCAGAGGCACTGCTGCTGCCGGTTGCTCTTGCTCCTGCACCTTCTTCCTCTCCTCCTCCTCCTCCACCTCCT

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

scaffold_6473:14017217-14017363 +

40.38

CATGTTT-AGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGC-----------------AGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGA-CCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT CATGGGCTGGAT-GGGCATGCGCATGCG--AGACCGCATTGAA-GATCACTTTGGGACTCTGTCGATTCGCTGGCG-AATTCTCATTCTCCTCGTCCGCCGT-CTCTGTCGCCGAAGAGTCGTACTCCTCGCTGGTCTTCTGCTTCTTCGGCG	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
........................TGCG--AGACCGCGTTGAG-G............................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00

scaffold_6496:6070291-6070401 +

33.75

CATGTTTAGATCGGACCCAAAGGTG--------GGCGACA--------------AGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCT-GAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGC--------AT CT------GGGCGGACGCAGTGGACTCTGTCCAGGCGGCGACTGCTGCGTGTTCACGCCAGGCGGCGGCTGTTGCTGCTGCTGTTGTTGTTGCTGCAAAGCTG------------------------------------------------CCGCATCAGGCGGA	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
........................CTCTGTACAxGCGGCGACT..........................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00

scaffold_6496:24975225-24975324 +

31.99

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATT-CTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCT-CCTCCGCAT AGTGTTGC---------------------------------TGCTGCTGTTGTTGATGGTGTTGCTGCTGCTGCTGCTGTTGTTGTTGCTGCTGCTGCTGTGCGGCGATTGCTGC---TGCAATCTGCTGCTGGAA	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
..................................................................................TTGTTGCTGCTGCTGCTGTCCGGG..............................	24	2	0.50	0.50	0.00	0.00	0.00

scaffold_6680:7329990-7330056 -

30.3

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTCTTCCTCCGCTTCATCCTCCTCCGCAT
----------------------------GGCAGGGTAAAAGGGGAGCATTGACTGATTCTACTCTGCTGCTGCTCCAGCTCCAGCTGCTCTTGCT---------------------------------------

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

droGri2 - 1 hit found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_15252:8305990-8306138 -

51.04

CATGTTTAGATCGGACCCAAAGGTGGGCGACAAGGGCTGGGAGCAGCAGTTGCTGGCGGTATTCTGAAGCTGCTCTTCCGTGGGTTGCTCTTGCTCCTGACCCTCCTC---------------------TTCCTCCGCTTCATCCTCCTCCGCAT--------- CATGTTCAAATCGGAGCCATAGGTGGCCGACATGGGTTGTGACCACTCATTGGCCGATGCTTGCGGTTCCTTCT---------------CGGGTTCCGGTTCCGCTTCGGTCGCTGGCTGGGAATAGGGTTCCTCAGCTGCATTCGCTTCCTGATCGCTGTCCT	Size	Hit Count	Total Norm	V109 Male body
.................................................................................................................CTGGxxGTAAATAGGGTTCCT..............................	19	1	21.00	21.00
.................................................................................................................CTGGxxGTGAATAGGGTTCCT..............................	19	1	2.00	2.00
.................................................................................................................CTGGxxGTCAATAGGGTTCCT..............................	19	1	1.00	1.00
.................................................................................................................CTGGxxGTAAATAGGGTTCC...............................	18	1	1.00	1.00

Generated: 04/20/2012 at 05:42:42 EDT