dme-mir-4964- 12- and 20-way alignments

dme-mir-4964	chrX:8859833-8859945 +	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intron

Legend:

   mature strand at position 8859898-8859920
   star strand at position 8859861-8859884
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chrX:8859818-8859960 +	TCGCCATGC----T---TCGACAATTT-TTGAATGGTCCTTTTCATGCCCAAGGCGAATAAATATGTATTTATG----T------------ATATTTTTTTATATGGTACG---TATTTATTTGTCTGCAAATGGCTGCCAA--GGAGTGCTACATAATCAATTTGTTTGTT
droSim1	chrX:7057967-7058102 +	TCGCCATGC----T---TCGACAATTT-TTGAATGGTCCTTTTCATGCCCAAGGCGAATAAATATGTATTTATG----T------------ATATATATTT----------ATATACGCATTCGTCTGCAAATGGCTGCCAT--GGAGTGCTACATAATCAATTTGTTTGTT
droSec1	super_34:222375-222488 +	TCGCCATGC----T---TCGACAATTT-TTGAATGGTCCTTTTCATGCCCAAGGCGAATAAATATGTATTTATG----T------------TTATATATT--------------------------------TGGCTGCCAT--GGAGTGCTACATAATCAATTTGTTTGTT
droYak2	chrX:12451967-12452096 -	TTGCCATGC----T---TGGACAATTT-TTGAATGGTCCTTTTCATGCCCAAGGCGAATAAATATGTATTTATG----T------------GTAGAT----------------ATATGTATTTGTCTGAAAATGGCTGCCAA--GGAGTGCTACATAATCAATTTGCTTATT
droEre2	scaffold_4690:6251913-6252052 -	TTGCCATGC----T---TGGACAATTT-TTGAATGGTCCTTTCCATCCCCAAGGCGAATAAATATGTTTGTGTG----T------ACGA--GTATATATTT----------ATATATGTATCGGTCTGCAAATGGCTGCCAA--TGAGTGCTTCAAAATCAAATTGTTTGTT
droAna3	Unknown	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp4	Unknown	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer1	Unknown	TTTCCATGC----T---TGGACAATTCCTTGAACGGTCGT---CCCGCCCG------------------------------------------------------------------------GTTTGCCA---GC--CCA-----AGGGCTATATAATCAA----------
droWil1	scaffold_181150:832795-832852 +	TTGCG-TAT----T-----------------------------TTCTTTCAGTATAAATGAATATGTATGAGTC----G------------AAA--------------------------------------TACCTATAAA--T------------------------GAT
droVir3	Unknown	CTCCT-CAT----TGGATCAACAAATG-CCGCACATTTCTTT-CTTGCT-----------------------------------------------------------------------TTCGTTCACAATTTCTCTTCA-----ATTTTTATTCAATTCA------TACG
droMoj3	Unknown	C-GCGACGC----TGAGTAGACAAATTCTTTAAAGCTT----------------CGAGTAGGACtgtatgtatgtatgcgtgtgtatgcgtgtgtgtttgcgtatggcaaa---tgtatatatgtatatTTATTCCACATTT--GTCTTGTAATATAATCAATTTTGATTCA
droGri2	Unknown	TTCTG-GCCTAGCTGAGCGGACAACTC-TGAAGTGTACATTTG-----CCATtatatatacatatatatatata----c------------aca--tacatat--------atgtgcacatatataCACA----CATACCATTTATGTCGTTATAAAATCAATTATTATTCT

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chrX:8859818-8859960 +	NA	TCGCCATGCTTCGACAATT-TTTGAATGGTCCTTT------T-------------------------CATGCCCAAGG---------------------CGAATAAATATG-----TATTTATGTATA----TTTT--T----T--TATATGGTACGTATTTATTTGTCTGCAAATGGCTGCC--------------------------------AAGGAG--TGCTACATAATCAA-TTTGT----TTGTT
droSim1	chrX:7057967-7058102 +	1	TCGCCATGCTTCGACAATT-TTTGAATGGTCCTTT------T-------------------------CATGCCCAAGG---------------------CGAATAAATATG-----TATTTATGTATA----TATA--T----T--TATAT-------ACGCATTCGTCTGCAAATGGCTGCC--------------------------------ATGGAG--TGCTACATAATCAA-TTTGT----TTGTT
droSec1	super_34:222375-222488 +	1	TCGCCATGCTTCGACAATT-TTTGAATGGTCCTTT------T-------------------------CATGCCCAAGG---------------------CGAATAAATATG-----TATTTATGTTTA----TATA--T----T-------------------------------TGGCTGCC--------------------------------ATGGAG--TGCTACATAATCAA-TTTGT----TTGTT
droYak2	chrX:12451967-12452096 -	4	TTGCCATGCTTGGACAATT-TTTGAATGGTCCTTT------T-------------------------CATGCCCAAGG---------------------CGAATAAATATG-----TATTTATGTGTA----GATA--------------T-------ATGTATTTGTCTGAAAATGGCTGCC--------------------------------AAGGAG--TGCTACATAATCAA-TTTGC----TTATT
droEre2	scaffold_4690:6251913-6252052 -	1	TTGCCATGCTTGGACAATT-TTTGAATGGTCCTTT------C-------------------------CATCCCCAAGG---------------------CGAATAAATATG-----TTTGTGTGTACGAGTATATA--T----T--TATAT-------ATGTATCGGTCTGCAAATGGCTGCC--------------------------------AATGAG--TGCTTCAAAATCAA-ATTGT----TTGTT
droEug1	scf7180000408176:293546-293674 +	1	TTGCCATGCTTGGACAATT-TTTGAATGGTTCTTTGAATGGT-------------------------CATGCCCAAAG---------------------------GCGTCG-----TCTTAG--TATA----TATATTT----T--GATAT----------------CCCCCAAATCGCTGTC--------------------------------GAGGAGGTGGCTACATAATCAA-TTTGT----TTGTT
droBia1	scf7180000301760:2585945-2586054 +	1	TTGCCATGCTTGGACTAAT-TTTGAACGGCCCTTT------G-------------------------CCAGCCGCCGG---------------------CGAATAAATGTG-----TATATATACATG---------------------------------------------AAGGGATGCC--------------------------------AAGAAG--TGCTTCATAATCAA-TTTGT----TTGTC
droTak1	scf7180000415169:1065824-1065935 -	3	TTTCCATGCTTGGACAATT-TTTGAATGGTCCTTT------T-------------------------CTTGCCCCAAG---------------------CGAATAAATGTA-----TATATAGGTATAAATATATA--T----T------T-------------------------G--------------------------------------GAGGAG--TGCTACATAATCAA-TTTGT----TTGTT
droEle1	scf7180000491006:2358806-2358931 +	2	TTTTCATGCTTGGACAATT-TTTGAGTTGTCCTTT------T-------------------------TATGCCCAAGC---------------------CGAGTATATGTA-----TATATAAGTATA----TTTA--T-----------------------ATATAACCACAAATGGAAGCC--------------------------------AAGGAG--TGCTTCATAATCAA-TTTGT----TTGTA
droRho1	scf7180000779841:367202-367332 +	1	TTTCCATGCTTGGACAATT-TTTGAACGGTCCTTT------T-------------------------CATGCCCAAGG---------------------CCAATATATATA-----CATATATATATA----TATA--------------A-------GTCTATATGTCTACAAATGGATGGC--------------------------------AAGGAG--TGGTACATAATCAATTTAGC----TTGTT
droFic1	scf7180000453829:828317-828436 +	1	TTTCCATGCTTGGACAATT-TTTGAATGGTCCTTT------T-------------------------CATGCCCAAGG---------------------CGAATAAATATG-----TATATATATA------TATA--T----T-----------------------TGCACAAATGGATACC--------------------------------AAAGAG--TGCTGCATAATCAA-TTTAT----TTGTT
droKik1	scf7180000302698:232066-232210 -	2	TTTCCACGCTTGGACAGTTCTCTGAATGGTCCTTT------TTGCGCTTGGGGGAAT--------------------G---------------------TAGCTAAATGTA-----GGTTTATGTATC----TATATTTTAATAACTGTGTCAAATATCTATATCTATCAACAAA--------------------------------------------CT--GGCTACATAATCAA-TTTGT----TTGTT
droAna3	Unknown	NA	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	Unknown	NA	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp4	chrXL_group1e:8134181-8134346 +	7	TTTCCATGCTTGGACAATTCTTTGAACGGTCGTCC------C---------------T----TTTTGCCAGCCCAAGGGGGGAGGGATGGGGGGGGGGGGGAATAAATATA-----TCAACAA----A----AATA--C----T-----------------CGTAAGGCGAATAATGGCAAC-GTCTGGGGTGAGCGATTGAGAGTTGTATCTGG-----A--AGCTATATAATC-----------------
droPer1	super_13:433852-434017 -	7	TTTCCATGCTTGGACAATTCCTTGAACGGTCGTCC------C---------------GCCCGGTTTGCCAGCCCAAGGGGC----GGCGGGGGGAGGGGGGAATAAGTATA-----TCAACAA----A----AATA--C----T-----------------CGTAAGGCGAATAATGGCAAC-GCCTGGGGTGAGCGATTGAGAGTTGTATCTGG-----A--AGCTATATAATC-----------------
droWil1	scaffold_181150:832777-832852 +	4	ATGTCTTCCATTCCCTATT-TGCGTATTTTCTTT---------------------------------------CAGTA---------------------TAAATGAATATG-----TATGAGTCGA------AATA--C----C-----------------T-----------------------------------------------------------------------------ATAA----ATGAT
droVir3	scaffold_12726:2732407-2732514 +	1	TGGA------TCAACAAAT-GCCGCACATTTCTTT--------------------------------CTTGCTTTCGT---------------------TC-ACAATTTCTCTTGTAATATAATC---AATTTTTA--T----------------------------TCAATT--------------------------------------------CATA--CGATTCACATTCAA-TTCGTT---TGACT
droMoj3	scaffold_6500:9117978-9118115 -	24	CA----AGCTGCGACTATG-TAATTAAAATTGTAT------G--TATCAGCGGGTCT----------ATTGCTATGTG---------------------TGTATAGGTGTG-----TGTGTGTGTGTA------TG--------------T-------GTGTGTATGTGTGCATATACAAAGC--------------------------------CATAAT--AGCATAAAACTCGA-TAAGC----CTGGC
droGri2	scaffold_15110:597989-598133 +	9	TCGCCATATTTCGTTGAAT-T-------CTTCGCC------ATATATC---------G---------TATGAT---------------------------TTATATATATA-----TATATAAATATA----TATA--TATATTTCGGCTCCAAATATTTTTTATATTTTGCAAAGACTTGCT--------------------------------GTG--G--TTTTTCATAAGTGAGTTTGA-ATATTGTA

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

TCGCCATGC----T---TCGACAATTT-TTGAATGGTCCTTTTCATGCCCAAGGCGAATAAATATGTATTTATG----T------------ATATTTTTTTATATGGTACG---TATTTATTTGTCTGCAAATGGCTGCCAA--GGAGTGCTACATAATCAATTTGTTTGTT

Size

Hit Count

Total Norm

droSim1

TCGCCATGC----T---TCGACAATTT-TTGAATGGTCCTTTTCATGCCCAAGGCGAATAAATATGTATTTATG----T------------ATATATATTT----------ATATACGCATTCGTCTGCAAATGGCTGCCAT--GGAGTGCTACATAATCAATTTGTTTGTT	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
..............................................................TATGTATATATG----T------------ATATATG..........................................................................	20	1	1.00	0.00	1.00	0.00	0.00
......................................................................TATG----T------------ATATAGATCT----------ATATAC.......................................................	21	1	1.00	0.00	1.00	0.00	0.00

droSec1

TCGCCATGC----T---TCGACAATTT-TTGAATGGTCCTTTTCATGCCCAAGGCGAATAAATATGTATTTATG----T------------TTATATATT--------------------------------TGGCTGCCAT--GGAGTGCTACATAATCAATTTGTTTGTT	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
........................................................................................................................................................GCATAATCxATTTGTTTGT.	18	1	1.00	0.00	1.00	0.00
.........................................................................................................................................................CATAATCxATTTGTTTGTT	18	1	1.00	0.00	1.00	0.00

droYak2

TTGCCATGC----T---TGGACAATTT-TTGAATGGTCCTTTTCATGCCCAAGGCGAATAAATATGTATTTATG----T------------GTAGAT----------------ATATGTATTTGTCTGAAAATGGCTGCCAA--GGAGTGCTACATAATCAATTTGCTTATT	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
..............................................................................................................................TGACAAxGGCTGCCAA--GGAG........................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
...................................................................ATTTxTG----T------------GTAAAT----------------ATATGT.....................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00

droEre2

TTGCCATGC----T---TGGACAATTT-TTGAATGGTCCTTTCCATCCCCAAGGCGAATAAATATGTTTGTGTG----T------ACGA--GTATATATTT----------ATATATGTATCGGTCTGCAAATGGCTGCCAA--TGAGTGCTTCAAAATCAAATTGTTTGTT	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
...........................................................................................GTCTATATAT----------ATATATGT.....................................................	18	1	1.00	0.00	0.00	0.00	1.00
.......................................................AAATAAATATGTGTGTGT...................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
...........................................................................................GTATATATTT----------CTATGTGT.....................................................	18	1	1.00	0.00	0.00	0.00	1.00
.........................................................ACAAATTTGTTTGTGTG----T------.......................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
......TGC----T---TGGACTACTT-TTGAAT..........................................................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
.........................................................ATAAATATGGTTGTGGG----T------.......................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
........................................................................................A--GGATATATGT----------ATATATG......................................................	18	2	0.50	0.00	0.00	0.00	0.50
......TGC----T---TGGACTATTT-TTGG............................................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
.........................................................ATATATATGTATGTGTG----T------.......................................................................................	18	2	0.50	0.00	0.00	0.50	0.00

droAna3

----------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

dp4

----------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

droPer1

TTTCCATGC----T---TGGACAATTCCTTGAACGGTCGT---CCCGCCCG------------------------------------------------------------------------GTTTGCCA---GC--CCA-----AGGGCTATATAATCAA----------

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

droWil1

TTGCG-TAT----T-----------------------------TTCTTTCAGTATAAATGAATATGTATGAGTC----G------------AAA--------------------------------------TACCTATAAA--T------------------------GAT	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
......................................................TAAATGAATxTGTATGTGT...................................................................................................	18	1	3.00	0.00	3.00	0.00	0.00
......................................................TAAATGAATxTGTATGTGTC----..............................................................................................	19	1	2.00	0.00	2.00	0.00	0.00
......................................................TAAATGAATATGTGTGTGT...................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00
.....................................................ATAAATGAATATCTAGGAG....................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00

droVir3

CTCCT-CAT----TGGATCAACAAATG-CCGCACATTTCTTT-CTTGCT-----------------------------------------------------------------------TTCGTTCACAATTTCTCTTCA-----ATTTTTATTCAATTCA------TACG

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

droMoj3

C-GCGACGC----TGAGTAGACAAATTCTTTAAAGCTT----------------CGAGTAGGACtgtatgtatgtatgcgtgtgtatgcgtgtgtgtttgcgtatggcaaa---tgtatatatgtatatTTATTCCACATTT--GTCTTGTAATATAATCAATTTTGATTCA	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
................................................................................TATGTGTGCGTGTGTGTTTG........................................................................	20	2	21.50	13.00	7.00	1.50	0.00
................................................................................TATGTGTGCGTGTGTGTTT.........................................................................	19	2	11.50	6.50	3.50	1.50	0.00
............................................................................TGTGTCTGTATGCGTGTGTGT...........................................................................	21	1	3.00	1.00	2.00	0.00	0.00
...............................................................CTTTATGTATGTAAGCGT...........................................................................................	18	1	2.00	1.00	1.00	0.00	0.00
............................................................................TGTGTGTGTATGTGTGTGTG............................................................................	20	3	0.67	0.33	0.33	0.00	0.00
................................................................................TATGTGTGCGTGTGTGTT..........................................................................	18	2	1.00	0.00	1.00	0.00	0.00
................................................................................TATGTGTGCGTGTGTGTTTGC.......................................................................	21	2	1.00	0.50	0.50	0.00	0.00
...............................................................................GTGTGTGTGCGTGTGTGT...........................................................................	18	2	1.00	1.00	0.00	0.00	0.00
....................................................................TGTATGTATGCCTGTGTGTGC...................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
...............................................................................GTGTGCATGCGTGTTTG............................................................................	17	1	1.00	0.00	1.00	0.00	0.00
................................................................TGTATGTGTGTATGTGTGTGT.......................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
............................................................................TGTGTGTGTATGCGTTTGTGT...........................................................................	21	1	1.00	1.00	0.00	0.00	0.00
................................................................................TGTGTGTGTGTGTGTGTTTG........................................................................	20	4	0.25	0.25	0.00	0.00	0.00
................................................................TGTATGTATGTATGTATGTGT.......................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
...............................................................................GTGTGTATGTGTGTCTGT...........................................................................	18	2	0.50	0.00	0.00	0.00	0.50
...........................................................................ATGTGTGTGTGTGCGTGTGTG............................................................................	21	1	1.00	1.00	0.00	0.00	0.00
.....................................................................GTATGTGTGTGTGTGTA......................................................................................	17	2	0.50	0.00	0.50	0.00	0.00
..............................................................................CGTGTGTGTGTGTGTGTGTTT.........................................................................	21	1	1.00	1.00	0.00	0.00	0.00
.......................................................................ATGTATGCCTGTGTGTGCGT.................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
......................................................................................TGTGTGTGTGTGTGCGTA....................................................................	18	1	1.00	1.00	0.00	0.00	0.00
.......................................................................................GCGTGTGTGTGTGCGTGTG..................................................................	19	3	0.33	0.00	0.00	0.00	0.33
................................................................................TGTGTGTGAGTGTGTGTTT.........................................................................	19	2	0.50	0.50	0.00	0.00	0.00
............................................................................TGTGTCTGTATGCGTGTGTG............................................................................	20	1	1.00	1.00	0.00	0.00	0.00
..................................................................TGTGTCTGTATGCGTGTGT.......................................................................................	19	2	0.50	0.50	0.00	0.00	0.00
...............................................................................ATGTGTATGTGTGTGTGTTTG........................................................................	21	1	1.00	1.00	0.00	0.00	0.00
.............................................................................GTGTGTGTATGCCTGTGTGT...........................................................................	20	1	1.00	0.00	0.00	0.00	1.00
............................................................................TGCGTGTGTGTGTGTGTGTG............................................................................	20	5	0.20	0.00	0.00	0.00	0.20
.............................................................................GTGTCTGTATGCGTGTGTGT...........................................................................	20	1	1.00	1.00	0.00	0.00	0.00
.............................................................................GTGTGTGTATGTGTGTGT.............................................................................	18	6	0.17	0.00	0.17	0.00	0.00
...................................................................................GTATGGGTGTGTGTGTGC.......................................................................	18	1	1.00	1.00	0.00	0.00	0.00
............................................................................TGCGTGTTTATGCTTGTGTGT...........................................................................	21	1	1.00	0.00	1.00	0.00	0.00
...............................................................................GTGTGTGTGTGTGTGTGT...........................................................................	18	12	0.08	0.08	0.00	0.00	0.00
............................................................................TGTGTCTGTATGCGTGTGT.............................................................................	19	2	0.50	0.50	0.00	0.00	0.00
............................TTTACAGCGT----------------CGAGTAGGA.............................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00
..................................................................................TGTATGCGTGTGTGTGTC........................................................................	18	1	1.00	1.00	0.00	0.00	0.00
.............................................................................GCGTGTGTTTGTGTGTGTGT...........................................................................	20	2	0.50	0.50	0.00	0.00	0.00
..............................................................................CCTGTGTGTGCGTGTGTG............................................................................	18	3	0.33	0.00	0.00	0.33	0.00
........................................................................TGTGTGTGTGTGTATGC...................................................................................	17	1	1.00	0.00	1.00	0.00	0.00
.............................................................................GTGTCTGTATGCGTGTGT.............................................................................	18	2	0.50	0.50	0.00	0.00	0.00
...............................................................................GTCTGTATGCGTGTGTGTGT.........................................................................	20	1	1.00	1.00	0.00	0.00	0.00
..................................................................TATGTATTTATGTGTGTGT.......................................................................................	19	1	1.00	1.00	0.00	0.00	0.00
............................................................................TGCGTGTGTATGTGTGTGTG............................................................................	20	2	0.50	0.00	0.00	0.00	0.50
......................................................................TATGTATGCGTGTGTTTGCAT.................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..................................................................................TGTATGCGTGTGTGTATGTG......................................................................	20	1	1.00	1.00	0.00	0.00	0.00
.................................................................GTATGTATGAATGCGTGTGTGT.....................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
...............................................................................GTGTGTATGTGTGTGTGT...........................................................................	18	4	0.25	0.25	0.00	0.00	0.00
.....................................................................GTATGTATGCGTGTGTGTGT...................................................................................	20	2	0.50	0.50	0.00	0.00	0.00
..........................................................................TATGAGTGAGTATGCGTG................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
............................................................................TGCGTGTGTATGTGTGTGTGCT..........................................................................	22	1	1.00	1.00	0.00	0.00	0.00
................................................................TGTATGTATGTATATGTGT.........................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
...........................................................................ATGCGTGTGTCTGTGTGT...............................................................................	18	1	1.00	0.00	1.00	0.00	0.00
....................................................................TGTATGTGTGTGTGTGTATGC...................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
.................................................................GTGTGTATGTATGTGTGTGTATG....................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
...................................................................GTGTCTGTATGCGTGTGT.......................................................................................	18	2	0.50	0.50	0.00	0.00	0.00
.....................................................................GTATGGATGCGTGTGTATGCATGTGT.............................................................................	26	1	1.00	0.00	0.00	0.00	1.00
...................................................................ATGTATGTATGTGTGTATA......................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
............................................................................TGCGTGTGTATGCATGTGTGC...........................................................................	21	1	1.00	1.00	0.00	0.00	0.00
.............................................................................GTGTCTGTATGCGTGTGTG............................................................................	19	1	1.00	1.00	0.00	0.00	0.00
..................................................................TATGTATGTGTGTGTGTGTA......................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
............................................................................TGAGTGTGTATGGGTGTGTG............................................................................	20	1	1.00	0.00	0.00	0.00	1.00
..............................................................................CGTGTTTATGCTTGTGTGT...........................................................................	19	1	1.00	0.00	1.00	0.00	0.00
.....................................................................GTATGTATGCCTGTGTGTGCG..................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
..................................................................TATTTGTGTATGCGTGTG........................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
................................................................TGTGTGTCTGTATGCGTGTGT.......................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
........T----TGAGTAGAxAAATTCTTTA............................................................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00
...................................................................ATGTTTGTGTGCGTGTGT.......................................................................................	18	3	0.33	0.33	0.00	0.00	0.00
.....................................................................GTATGTATGTGTGTGTATG....................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
.......................................................................CTGTATGCGTGTGTATGCCTGTGTG............................................................................	25	1	1.00	0.00	0.00	1.00	0.00
.....................................................................GTATGTATGCCTGTGTTTGC...................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
......................................................................................TGCGTGTGTGTGTGCGTG....................................................................	18	4	0.25	0.00	0.00	0.25	0.00
................................................................................TGTGTATGTGTGTGTGTATG........................................................................	20	2	0.50	0.50	0.00	0.00	0.00
....................................................................................TATGCGTGTGTGTGTGTGTAT...................................................................	21	1	1.00	1.00	0.00	0.00	0.00
.......................................................................TTGTATGCGTGTGTATGCCTGTGTG............................................................................	25	1	1.00	0.00	0.00	1.00	0.00
...........................................................................ATGCGTGTGTATGTGTGT...............................................................................	18	1	1.00	1.00	0.00	0.00	0.00
..............................................................................TGTGTGTATGCGTGTGTG............................................................................	18	3	0.33	0.33	0.00	0.00	0.00
................................................................................TTTGTATGTGTGTGTGTTT.........................................................................	19	1	1.00	0.00	0.00	1.00	0.00
................................................................TGTxTTTATGTATGCGTGT.........................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
......................................................................TATGTATGCCTGTGTGTGCGT.................................................................................	21	1	1.00	0.00	0.00	1.00	0.00
...............................................................................GTGTGTGTGCGTGGGT.............................................................................	16	6	0.17	0.00	0.17	0.00	0.00
....................................................................TGTATGTGTGTGTGTGTATG....................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
............................................................................TGCATGTGTATGCATGTGTGT...........................................................................	21	1	1.00	0.00	1.00	0.00	0.00
...............................................................................GTATGTATGCGTGTGTGTGT.........................................................................	20	2	0.50	0.50	0.00	0.00	0.00
................................................................TGTGTGTATGTATGCCTGTGT.......................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
...............................................................................GTGTGTGTGTGTGTGTGTT..........................................................................	19	6	0.17	0.17	0.00	0.00	0.00
....................................................................TGTGTGTATGCGTGTGTG......................................................................................	18	3	0.33	0.33	0.00	0.00	0.00
............................................................................TGTGTGTGTATGTGTGTGTGT...........................................................................	21	2	0.50	0.50	0.00	0.00	0.00

droGri2

TTCTG-GCCTAGCTGAGCGGACAACTC-TGAAGTGTACATTTG-----CCATtatatatacatatatatatata----c------------aca--tacatat--------atgtgcacatatataCACA----CATACCATTTATGTCGTTATAAAATCAATTATTATTCT

Size

Hit Count

Total Norm

V109
Male body

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image						None	None
UNAFold Image						None	None

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image													None	None
UNAFold Image													None	None