Possible Orthologs for dme-mir-4959

droSim1 - 5 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

chrX:14724057-14724205 -

94.68

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC TGCTCATGGCCCTGATGTCCGGCTTGAACCTTCTGTGCCGGCTGGCCATGATCTGCAGCAGGTACCTCCGAGAGCAGATGATACGCAGCCAGCTGCGTTTCATGACCAAGCGGCATGTGAAGCGTGCCCTGCGTGACCTGACCATCGGC	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
...................................................................................................TCATGACCAAGCTGGATG................................	18	1	2.00	0.00	2.00	0.00	0.00
......................................................................................AGCCAGCxGCGTTTCAAGAC...........................................	19	1	1.00	0.00	0.00	1.00	0.00
......................CTTGAACCTTCTGTGCCGGCTGGCCAT....................................................................................................	27	1	1.00	0.00	0.00	0.00	1.00

chrX_random:5228751-5228899 -

55.62

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC TGTTCATCGCCCTGCTGGCCACGGTGAACATCGTCTATCGCCTGCTGGTCATCTGCTGCCCGGAGCTGCGCCTCCAGCTGTTGCGCACCCACCTGAAGGGCATGCCCAAGGCGCATGTGCGGGAAGTCCTGGCCAGCGCAGGATACGGC	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
............................CATCTTCTATCGCCTGTTGGTC...................................................................................................	22	1	2.00	0.00	1.00	1.00	0.00
..................................................AACTGCTGCGCGGAGCTGC................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
..................................................ATCTGCCGxCCGGAGCTGC................................................................................	18	1	1.00	0.00	0.00	0.00	1.00

chr3L:6069645-6069793 -

54.74

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC TACTAGTGGCTATGCTCATTGCCCTCAAGTTTCTGTACCGCCTGGCCACCGTTTTGTATCCCGGAATGCGTCTGCAGTTGCTTCGTGCCAGGGCACGTTTCATGCCCAAGAAGCACTTGCAGGTGGCACTGCGCAATTGCAGTTTCGGC	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
.....GTGGCTGTGCTTATTGCC..............................................................................................................................	18	1	2.00	0.00	0.00	1.00	1.00
......................CCTCAAGTTTCTGTACCGCCTGGCCAC....................................................................................................	27	1	1.00	0.00	0.00	1.00	0.00
.................................................................................................................CACTTGCCGTTGGCACTG..................	18	1	1.00	0.00	0.00	1.00	0.00
.............................TTTTTGTACCGACTGGCC......................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00

chrX:5416170-5416318 +

49.33

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC TCATCCTGAGCATCATGTCGGGAATATCGCTTATCTACAGAATCGCCGTGGTGTCGGGTCCCAAGCTGCGCCATCTCCTGCTCCGAGCCCGTTCCCGTCTGGCCGAAAGCGAGGAGGTCGAACTGGTGGCCAACAAATGCAACATCGGC	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
.....CTGAGGATCCTGTCGGGA..............................................................................................................................	18	1	4.00	0.00	0.00	4.00	0.00
..................................................................................................................................CAACAAATGCAACATCGGC	19	1	3.00	0.00	0.00	3.00	0.00
..............................................................................................................GAGGAGGTCGAACTGGTGGC...................	20	1	1.00	0.00	0.00	0.00	1.00
.............................................................................................................CGAGGATGTCGAACTGGTGGC...................	21	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................................CAACAAATGCAACATCGAC	19	1	1.00	0.00	0.00	0.00	1.00
.....................................................................................AGCCCGTTCCCGTCTGGCCG............................................	20	1	1.00	0.00	0.00	0.00	1.00
.............................................................................................................CGAGGAGGTCGAACTGGTGGC...................	21	1	1.00	0.00	0.00	1.00	0.00
............................................................................................................GCGAGGAGGTCGAACTGGTGGCC..................	23	1	1.00	0.00	0.00	1.00	0.00
.....................................................................................AGCCCGTTCCCGGCTGGCCG............................................	20	1	1.00	0.00	0.00	0.00	1.00

chrX:5408476-5408548 -

24.19

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC GCCT--------TCCTTTTGGTTGTTACTGTTCTGGGACTGCTTTGGAGAATTTTCACCCTGT-GCTTCTACAGAAAGTGA--------------------------------------------------------------------	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
..............CTTTTGGTTGTTACTGTTCTGGGA...............................................................................................................	24	1	1.00	0.00	0.00	1.00	0.00
.............................GTTCTGGGACTGCTTTGGA.....................................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
..............................TTCTGGGACTTCTTTGGATA...................................................................................................	20	1	1.00	0.00	0.00	1.00	0.00
.............................GTTCTGGAACTGCTTTAGAG....................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00

droSec1 - 6 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

super_8:1352288-1352436 -

95.35

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC TGCTCATGGCCCTGATGTCCGGCTTGAACCTTCTGTGCCGGCTGGCCATGATCTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGCTGCGTTTCATGACCAAGCGGCATGTGAAGCGTGCCCTGCGTGACCTGACCATCGGC	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
..CTCATGGCCCTTATGTCCT................................................................................................................................	19	1	3.00	0.00	0.00	3.00
.........................................CTGGCCATGATCTGCAGCAGGT......................................................................................	22	1	1.00	0.00	1.00	0.00
.........................................................................................CAGCTGCGTTTCATGACCAAGC......................................	22	1	1.00	0.00	1.00	0.00
....................................................................................GCCGCCAGCAGCGTTTCA...............................................	18	1	1.00	0.00	1.00	0.00
......................................................................................AGCCAGCxGCGTTTCAAGAC...........................................	19	1	1.00	1.00	0.00	0.00
..........................................................................................................................CGTGCCCAGCGTTACCTGA........	19	1	1.00	0.00	1.00	0.00
..CTCATGGCCCTTATGTCCC................................................................................................................................	19	1	1.00	0.00	0.00	1.00
....CATGGCCCTTATGTCCTG...............................................................................................................................	18	1	1.00	0.00	0.00	1.00
.CCTCATGGCCCTTATGTC..................................................................................................................................	18	1	1.00	0.00	0.00	1.00

super_8:2332592-2332740 -

55.62

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC TGTTCATCGCCCTGCTGGCCACGGTGAACATCGTCTATCGCCTGCTGGTCATCTGCTGCCCGGAGCTGCGCCTCCAGCTGTTGCGCACCCACCTGAAGGGCATGCCCAAGGCGCATGTGCGGGAAGTCCTGGCCAGCGCAGGATACGGC	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
..............................................................................................GAAGGACATGGCCAAGGC.....................................	18	2	0.50	0.00	0.00	0.50
..............................................GGTCATCGGCTGCCCGGC.....................................................................................	18	1	1.00	0.00	0.00	1.00
................................................TCAGCTGCTGGCCGGAGC...................................................................................	18	1	1.00	0.00	1.00	0.00

super_2:6534525-6534672 -

54.82

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCA-------GATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TACTAGTGGCTATGCTCATTGCCCTCAAGTTTCTGTACCGCCTGGCCACCGTTT--------TGTATCCCGGAATGCGTCTGCAGTGCTACGTGCCAGGGCACGTTTCATGCCCAAGAAGCACTTGCAGGTGGCACTGCGCAATTGCAGTTTCGGC

Size

Hit Count

Total Norm

V113
Male body

V114
Embryo

V115
Head

super_24:121187-121335 +

49.33

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC TCATCCTGAGCATCATGTCGGGAATATCGCTTATCTACAGAATCGCCGTGGTGTCGGGTCCCAAGCTGCGCCATCTCCTGCTCCGAGCCCGTTCCCGTCTGGCCGAAAGCGAGGAGGTCGAACTGGTGGCCAACAAATGCAACATCGGC	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
..................................CTACAGAATCGCCGTGGT.................................................................................................	18	1	2.00	0.00	2.00	0.00
...........................................CGCCGTGGTGTCGCATCCC.......................................................................................	19	1	2.00	0.00	2.00	0.00
..............................................CGTGGGGTCGGGTCCCAAGCT..................................................................................	21	1	1.00	0.00	0.00	1.00
...............................................................................................................AGGAGGTCGAACTGGTGGCCA.................	21	1	1.00	0.00	1.00	0.00
..........................................................................................GTTCCCGTCTGGCTGAAAG........................................	19	1	1.00	0.00	1.00	0.00
............................GCTTATCTACAGAATCGCCGTGGTGT...............................................................................................	26	1	1.00	0.00	1.00	0.00
....CCTGAGCATCATGTCGGG...............................................................................................................................	18	1	1.00	0.00	1.00	0.00
.................................................................................................TCTGGCCGAAAGCGAGGAGGTC..............................	22	1	1.00	0.00	1.00	0.00
................................ATCTACAGAATCGCCGTGGTGTCGGGT..........................................................................................	27	1	1.00	0.00	1.00	0.00
.....CTGAGCATCATGTCGGGA..............................................................................................................................	18	1	1.00	0.00	1.00	0.00
....................................................................................................GGCCGAAAGCGAGGAGGTC..............................	19	1	1.00	0.00	1.00	0.00
.......................................GAATCGCCGTGGTGTCGGGTC.........................................................................................	21	1	1.00	0.00	1.00	0.00
...............................TATCTACAGAATCGCCGT....................................................................................................	18	1	1.00	0.00	1.00	0.00
...................................................................................CGAGCCCGTTCCCGTCTGGCCGA...........................................	23	1	1.00	0.00	1.00	0.00
...................................................................................................................................AACAAATGCAACATCGGC	18	1	1.00	0.00	1.00	0.00
................................ATCTACAGAATCGCCGTGGTGTCGGGTCC........................................................................................	29	1	1.00	1.00	0.00	0.00
....................................................................................................GGCCGAAAGCGAGGAGGTCGAAC..........................	23	1	1.00	1.00	0.00	0.00
..................................CTACAGAATCGCCGTGGTGTCGGGT..........................................................................................	25	1	1.00	1.00	0.00	0.00
..............................TTATCTGCAGAGTCGCCGTGGTGT...............................................................................................	24	1	1.00	1.00	0.00	0.00
.............................................................................................................CGAGGAGGTGGACCTGGT......................	18	1	1.00	0.00	1.00	0.00

super_24:96288-96365 -

27.51

TGCTCATG---GCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC GGATCCTGCTCGTCCTGCTCATCGGACTGA---TAGTGTTCCGGTTAGTTTCGAAAGTTTCCAAATTTCTAAGAGCGAAGA-----------------------------------------------------------------------	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
......................................TTGCAGTTAGTTTCGAAA................................................................................................	18	1	6.00	0.00	6.00	0.00
...................................GTGTTACGGTTxGTTTCGA..................................................................................................	18	1	2.00	0.00	0.00	2.00
....................................TGTTCCGGTTxGTTTCGCA.................................................................................................	18	1	1.00	0.00	1.00	0.00
....................................TGTTACGGTTxGTTTCGAA.................................................................................................	18	1	1.00	0.00	1.00	0.00

super_24:113524-113596 -

24.19

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC GCCT--------TCCTTTTGGTTGTTACTGTTCTGGGACTGCTTTGGAGAATTTTCACCCTGT-GCTTCTACAGAAAGTGA--------------------------------------------------------------------	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
................................CTGGGACTGCTTTGGAGA...................................................................................................	18	1	1.00	0.00	1.00	0.00
.......................GTTACTGTTCTGGGACTGCTTTGGAG....................................................................................................	26	1	1.00	0.00	1.00	0.00
.................TTGGTTGTTACTGTTCTGG.................................................................................................................	19	1	1.00	0.00	1.00	0.00
.................TTGGTTGTTACTGTTCTGGGACT.............................................................................................................	23	1	1.00	1.00	0.00	0.00
................TTTGGTTGTTACTGTTCTGGGAC..............................................................................................................	23	1	1.00	0.00	1.00	0.00

droYak2 - 5 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

102

chrX:17654811-17654959 -

86.74

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC TACTGATGGCCCTGATGTCTGGCCTAAATCTCCTCTGCCGGCTGGCCATGATCTGCAGCGGGTATCTTCGGGAGCAGATGATACGCAGCCAGTTGCGGTTCATGACCAAGCGGCATGTGAAGCGCGCCCTGCGCGACCTCACCATCGGC	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.............................................................................................................................GTCCTGxGCGACCTCACC......	17	1	1.00	0.00	0.00	0.00	1.00	0.00
...............................................................................................................................CCTGGGCGACCTTACCA.....	17	1	1.00	0.00	0.00	0.00	1.00	0.00

110

chrX:19377823-19377971 -

55.62

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC TGTTCATCGCGATGCTGGCCACGATCAACATCCTCTACCGCCTGCTGCTTATCTGCTGCCCGGAACTGCGTCTCCAGCTGCTGCGCACCCACCTGCGCGGCATGCCCAAGGCGCATGTGCGAGAGGTCCTGGCCAGCGCAGGATACGGC	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
..................................................ATCTGCTGxCCGGAACTGCG...............................................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
...................................................................................................................GGTGCGAGAGGTCCCGG.................	17	1	1.00	0.00	0.00	0.00	1.00	0.00

chr3L:7169758-7169906 -

53.47

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TACTGGTGGCCATGCTCGTTGCCCTAAAGTTCATGTACCGCCTGGCCACCGTTTTGTATCCCGGCATGCGCCTGCAGTTGCTGCGAGCCAGGGCACGTTTCATGCCCAAGACGCATCTGCAGGTGGCACTGCGCAATTGCAGTTTTGGC

Size

Hit Count

Total Norm

V046
Embryo

V052
Head

V120
Male body

V058
Head

M026
Head

chrX:14456170-14456318 -

49.33

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC TCATCCTGAGCATCATGTCGGGAATATCGCTGATCTACAGAATCGCCGTGGTTGCGGGTCCCAAGCTGCGCCATCTCCTGCTCCGAGCCCGTTCCCGTCTGGCCGAAAGCGAGGAGGTCGAACTGGTGGCCAACAAGTGCAACATTGGT	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
..................................CTACAGAATCGCCGTGGTTGC..............................................................................................	21	1	4.00	0.00	0.00	0.00	0.00	4.00
....................................ACAGAATCGCCGTGGTTGC..............................................................................................	19	1	2.00	0.00	0.00	0.00	0.00	2.00
.................................TCTACAGAATCGCCGTGGT.................................................................................................	19	1	2.00	0.00	0.00	2.00	0.00	0.00
..............................................................................................................GAGGAGGTCGAACTGGTGGC...................	20	1	2.00	0.00	0.00	2.00	0.00	0.00
.............CATGTCGGGAATATCGCTGATCTAC...............................................................................................................	25	1	1.00	0.00	0.00	0.00	0.00	1.00
.............................................................................................................CGAGGAGGTCGAACTGGTGGC...................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
..............ATGTCGGGAATATCGCTGATCTAC...............................................................................................................	24	1	1.00	0.00	0.00	0.00	0.00	1.00
.................................................................................................................................CCAACAAGTGCAACATTGG.	19	1	1.00	0.00	0.00	1.00	0.00	0.00
.......................ATATCGCTGATCTACAGAATCGCCGTGGT.................................................................................................	29	1	1.00	0.00	0.00	1.00	0.00	0.00
.............CATGTCGGTAATATCGCTGATC..................................................................................................................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
......................................AGAATCGACGTGATTGCG.............................................................................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
..................................................................................................CTGGCCGAAAGCGAGGAGGT...............................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
........................................................................................................GAAAGCGAGGAGGTCGAACT.........................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................................................................................AGGAGGTCGAACTGGTGGCC..................	20	1	1.00	0.00	0.00	0.00	0.00	1.00
................................................................................................GTCTGGCCGAAAGCGAGGA..................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
.....CTGAGCATCATGTCGGGAATATCGCT......................................................................................................................	26	1	1.00	0.00	0.00	1.00	0.00	0.00
.......................ATATCGCTGATCTACAGAATCGCCGT....................................................................................................	26	1	1.00	0.00	0.00	1.00	0.00	0.00
..........................................................................................GTTCCCGTCTGGCCGAAAGCGAGGAG.................................	26	1	1.00	0.00	0.00	1.00	0.00	0.00
..............................................................................................................GAGGAGGGCGAACTTGTGGC...................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
............................................................................................................GCGAGGAGGTCGAACTGGTGGC...................	22	1	1.00	0.00	0.00	1.00	0.00	0.00

chrX:14464507-14464559 +

18.67

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC TCCTCTTGGTTGTCAC---AGTTCTGGGACTCCTCTGGCGA---------------------------------------------------------------------------------------------ATTTTCACCCTGTGC	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.............CAC---AGTTCTGGGACTCCTCTGGC..............................................................................................................	23	1	2.00	0.00	0.00	1.00	0.00	1.00
...................AGTTCTGGGACTCCTCTGGCGA---------------------------------------------------------------------------------------------...............	22	1	1.00	0.00	0.00	0.00	0.00	1.00
..........TGTCAC---AGTTCTGGGACTCCTCTGGC..............................................................................................................	26	1	1.00	0.00	0.00	1.00	0.00	0.00

droEre2 - 5 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_4690:9326382-9326530 -

87.4

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC TGCTGATGGCCCTGATTTCCGGCCTGAACCTCCTCTGCCGGCTGGCCATGATCTGCAGCAGGTATCTACGGGAGCAGATGATCCGCAGCCAGCTGCGGTTCATGTCCAAGCGGCATGTGAAGCGCGCCCTACGGGACCTCACCATCGGC	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.........................................CTGGCCATGATCTGCAGCAGGT......................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
.........................................................GCAAGTATCTACAGGAGC..........................................................................	18	1	1.00	0.00	0.00	0.00	1.00

scaffold_4690:10232374-10232522 -

56.28

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TGTTCATCGCGATGCTGGCCACGATCAACATCCTCTACCGCCTGCTTCTCATCTGCTGCCCGGAACTGCGCCTCCAGCTGCTGCGCACCCACCTGCGCGGCATGCCCAAGGCTCATGTGCGGGAGGTCCTGGCCAACGCAGGATACGGC

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

scaffold_4784:9272069-9272217 -

52.79

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC TACTAGTGGCTGTGCTCGTTTCCCTAAAGTTCCTGTACCGCCTGGCCACCATTTTGTATCCGGGAATGCGCCTGCAGTTGCTTCGTGCCAGGGCGCGTTTCATGCCCAAGGCGCACTTACAGGTGGCACTGCGCAATTGCAGTTTTGGC	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.............................GTCCTGTACCGCGTGGCC......................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
...................................................TTTGGTATCCGGGAATGG................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
...................................................TTTTGTAGCCGGGAATGG................................................................................	18	1	1.00	0.00	0.00	0.00	1.00

scaffold_4690:15815917-15816065 +

49.95

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC TCATCCTGAGCATCATGTCGGGAATATCGCTGATCTACAGAATCGCCGTGGTAGCGGGTCCCAAGCTGCGTCATCTCCTGCTCCGAGCCCGTTCCCGTCTGGCCGAAAGCGAGGAGGTCGAACTGGTGGCCAACAAGTGCAACATCGGT	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
....................GGAATATCGCTGATCTACAGAAT..........................................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
.......................ATATCGCTGATCTACAGAAT..........................................................................................................	20	1	1.00	0.00	0.00	0.00	1.00
.......................................................................................................................GAACCGGTGGCCAAAAAG............	18	1	1.00	0.00	0.00	0.00	1.00
..........................................................................................GTTCCCGTCTGGCCGAAAGC.......................................	20	1	1.00	0.00	0.00	0.00	1.00
...............................................................................................CGTCTGGCCGAAAGCGAG....................................	18	1	1.00	0.00	0.00	0.00	1.00
..................................CTACAGAATCGCCGTGGTAGC..............................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
....................................ACAGAATCGCCGTGGTAGCGGGT..........................................................................................	23	1	1.00	0.00	0.00	0.00	1.00
..........................................................................................GTTCCCGTCTGGCCGAAAGCGAGGAG.................................	26	1	1.00	0.00	0.00	0.00	1.00
................................ATCTACAGAATCGCCGTGGT.................................................................................................	20	1	1.00	0.00	0.00	0.00	1.00
.....CTGAGCATCATGTCGGGA..............................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
............................................................................................................GCGAGGAGGTCGCACTGGTGGC...................	22	1	1.00	1.00	0.00	0.00	0.00

scaffold_4690:15790660-15790703 -

19.05

TGCTCATGGCCCTGATG----TCCG------GTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TGCTCATCGGACTGATAGTGTTCCGGTAAGTGTTAGAAGCTTCT-------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V040
Embryo

V060
Head

V047
Embryo

V108
Head

droFic1 - 7 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000451789:82400-82548 -

82.1

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TGCTGATGGCCCTAATGTCCGGACTGAATCTCCTCTGCCGGCTGGCGATGATCTGCAGCCGGAACTTGCGGGAGCAGATGATTCGCAGCCAGCTGCGCTTCATGACCAAGCGGCATGTGCAGCGCGCCCTGCGCGACTTAACCATCGGT

Size

Hit Count

Total Norm

scf7180000451789:407489-407637 -

55.25

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TGTTCATCGCGATGCTGGCTGCCATCAACATCATCTACCGCATGCTGCTCTTCTGCTGCTCGGAGCTGCGTCTTCAGCTGCTGCGCACCCATTTGCGTGGAATGCCGAAGGCGCATGTCCGCGAGGTCCTTGCCAACACTGGATACGGT

Size

Hit Count

Total Norm

scf7180000453929:1005684-1005832 +

52.31

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TTTTTGTGGCTGGATTGGTTTCCCTGAAGATCCTTTACCGCCTGGCCACCATTTTCCATCCTGGAATGCGATTCCAGTTGTTGCGGGCCAAAGCTCGATTCCTGCCCAGGTCGCATTTGCAGGTGGCCCTGCGCAACTGCAGCTTCGGA

Size

Hit Count

Total Norm

scf7180000453927:1101936-1102084 -

49.01

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTG--AAGCGTGCCCTGCGGGACCTGACCATCGGC
TCATCCTGAGCATTATGTCCGGAATCTCGCTAATCTACCGCATCTCCGTCGTGGCGGGTCCCAAGCTCCGCCATCTTCTGCTGCGAGCCCGCTCCCGTTTGGCTGAGAGCGAGGAGGTGGAAATGGTGGCCAACAA--GTGCAACATTGGC

Size

Hit Count

Total Norm

scf7180000453927:1127870-1127927 +

22.64

TGCTCATG---GCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
GGATCCTGCTCGTCCTGCTCATCGGACTGA---TGGTGTTCCG----------------------------------------------------------------------------GTAAGGCGTGCTCTGCAG---------------

Size

Hit Count

Total Norm

scf7180000453927:1109746-1109801 +

19.73

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
CCTTCCTGCTGGTGGTCACTGTTCTGGGTCTTGTTTGGCGGCTCTTCACCCTCTGC---------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000453927:1128092-1128109 +

8.84

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
-----------------------------------------------------------------------------------------------------------------------------------CGGAAGCTGGACATCGGG

Size

Hit Count

Total Norm

None

droEug1 - 6 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000409089:53868-54016 +

81.44

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TGCTGATGGCTTTTATGTCTGGACTGAATCTTCTCTGCCGACTGGCCATGATCCTTAGCAGGAATCTCCGCGAGCAGATGATTCGCAGTCAGTTGCGTTTCATGAGCAAAAGGCATGTGAAGCGAGCCCTGGGCGACCTAACCATTGGG

Size

Hit Count

Total Norm

scf7180000409711:4156737-4156885 -

52.57

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TTTTGGTGGCTGTCCTCGTATCCCTGAAGTTTGTGTACCGCCTTACCACTGTTTTTTACCCCGGAATGCGATTGCACCTGCTGCGGGCCAGAGCTCGTTTCATGCCCAAGTCGGACTTGCAGTTGGCCCTGCGAAACTGCAGCTTTGGA

Size

Hit Count

Total Norm

scf7180000409095:232773-232921 +

50.58

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TCATCCTGAGCATCCTGTCCGGTATATCGCTGATCTACAGAATCGCCGTAGTGGCGGGTCCTAAACTTCGCCATCTTCTGCTCCGCGCCCGTTCCCGTCTGGCCGAAAGCGAGGAGGTCGAGCTGGTGGCCAACAAGTGCAACATTGGC

Size

Hit Count

Total Norm

scf7180000409230:247602-247750 +

49.66

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TATTCATCGCAATGCTGGCGACCATCAATATCTTCTATCGGCTATTGCTTTTCTGTTGCCCCGAGTTACGACTTCAGCTGCTCCGCACCCATTTGCGCGGAATGCCCAAGACGCAAGTGCGCGAAGTTCTTAACAACGTTGGCTATGGC

Size

Hit Count

Total Norm

scf7180000409095:205709-205928 -

27.03

TGCTCATGGCCCTGATG----TCCGGTT---------------------------------------------------------------------TGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATA------CGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTG-CGGGACCTGACCATCGGC
TGCTCATCGGACTGATAGTGTTCCGGTAAGAGGCAAAGCAAGCTACCAAAACTAGACATTTAACAGCACTTAAAATGGTTTCTTAAAATCTTTAAAATGTATCTTTTGCAGTGGCTG--CATCATCTTCATGCCGAAATTCCGGCCTCGCCTACTGAACGCCCGCAACCGAATGATTCCGAT-------GGAGATCTGTCGTTCGCTGTCCCGGAAACTGGACATTGGC

Size

Hit Count

Total Norm

scf7180000409095:224941-225015 -

23.05

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCC---GAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
CCTTCCT---------TTTGGTTGTTACCGTTCTGGGACTGGTTTGGAGAATCTTCACCCTGTGCTTCTACAGAAAGTAGGTG---------------------------------------------------------------------

Size

Hit Count

Total Norm

droBia1 - 6 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000302187:38542-38690 +

85.42

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TCCTGATGGCCCTGATGTCCGGCCTGAACCTCCTCTCCCGGCTGGCCATGATCTGCAGCAGATACCTCCGCGAGCAGATGATCCGCAGCCAGCTGCGCTTCATGACCAAGCGGCATGTGAAGCGCGCTCTGCGCGACCTCACCATCGGG

Size

Hit Count

Total Norm

scf7180000302193:4143106-4143254 -

57.22

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TTCTGGTGGCTGTACTGGTCTCCCTGAAGTTCCTGTACCGCCTGACCACCGCCTTATATCCCGGTATGCGACTGCAGTTGCTGCGTGCCAGGGCTCGTTTCATGCCCAAGTTGCACCTGCAGGTGGCCCTGCGCAACTGCAGCTTTGGC

Size

Hit Count

Total Norm

scf7180000302126:2894981-2895129 -

56.84

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGC--GTGCCCTGCGGGACCTGACCATCGGC
TGTTCATCGCAATGCTGGCGGCGATCAATATCCTGTACCGGCTGCTCCTCTTCTTCTGCACCGAGTTGCGGCTCCAGCTGCTGCGCACCCACCTGCGCGGAATGCCCAAGGCGCATGTGCGCCAGGTGCTCTCCACGGCCGGGTA--TGGC

Size

Hit Count

Total Norm

scf7180000301760:1691004-1691152 -

49.95

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TCATCCTGAGCATTCTGTCCGGAATCTCGCTGATCTACCGGATCTCCGTCGTGGCGGGACCCAAGCTGCGCCACCTTCTGCTCCGCGCCCGCTCCCGTCTGGCCGAAAGCGAGGAGGTCGAGTTGGTGGCCAACAAGTGCAACATCGGC

Size

Hit Count

Total Norm

scf7180000301760:1719334-1719544 +

28.76

TGCTCATGGCCCTGATG----TCCGGTTTGAA-----------------------------------------------CCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTAT------------------------CTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGC-GGGACCTGACCATCGGC
TGCTCATCGGACTGATAGTGTTCCGGTAAGATGCGGTATATTCATAGATGTGTATGACCAGCCTTGGTTTAATGGAACTCCTTCT--CCCTCAT-----CGCTTTGCAGTGGCTGCATTATCTTCATGCCGAAGTTCCGGCCCCGCCTGCTGAACGCCCGCAACCGCATGATTCCCAT-------GGAGATCTGTCGCTCGCTGTCCCGGAAGCTGGACATCGGC

Size

Hit Count

Total Norm

scf7180000301760:1698906-1698931 +

8.84

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TCCTGACCGTCACGGTTCTCGGGCTG---------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

droTak1 - 6 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000415281:63891-64039 -

84.75

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TCCTGATGGCCCTGATGTCCGGCCTGAATCTGCTCTGTCGGCTGGCGATGATCTGCAGCAGGAATCTGAGGGAGCAGATGATCCGCAGCCAGTTGCGCTTCATGGCCAAGCGGCATGTGAAGCGCGCCCTGCGGGATCTGACCATCGGG

Size

Hit Count

Total Norm

scf7180000415248:176696-176844 +

53.63

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TGTTAATCGCCATGCTGGCGGCCATCAATATCTGCTATCGCCTGCTGCTCTTCTGCTGCTCCGAGCTGCGGCTCCAGCTGCTGCGCACCCATTTGCGCGGAATGCCCAAGGCGCATGTGCGCCAGGTTCTGGCCAACGGGGGCTACGGC

Size

Hit Count

Total Norm

scf7180000415809:528893-529041 -

52.83

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TTCTGGTGGCTTCTTTGGTTAGCCTGAAGTTCCTTTACCGACTGGCCACCGTTTTGTATCCCGGAATGCGACTGCAATTGCTGCGGGCCCGAGCTCGCTTCATGCCAAAAACGCACTTGCAGGTGGCTTTGCGCAACTGCAGCTTTGGC

Size

Hit Count

Total Norm

scf7180000415873:533901-534049 +

50.58

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TCATCCTGAGCATTCTCTCCGGCATTTCGCTGATCTACCGGATCTCCGTAGTGGCGGGACCCAAGCTCCGTCATCTCCTGCTCCGCGCCCGTTCCCGTCTGGCCGAAAGCGAGGAGGTCGAGCTGGTGGCCAACAAGTGCAACATCGGC

Size

Hit Count

Total Norm

scf7180000415873:525794-525909 -

33.16

TGCTCATGGCCCTGATGTCCGGTTTGAACC--------------TTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TATTGGTTGTCACGGTTCTCGGACTGATTTGGCGAATGTTCACCCTGTGCTTCTACAGGA---AGTAAGTGATATTTATATTAGAAAGTTATCGATATCTGATCATTTTTTTTCTGTGA--------------------------------------------

Size

Hit Count

Total Norm

scf7180000415873:506608-506803 -

31.46

TGCTCATGGCCCTGATG-------------------------------------TCCGGTTTGAACCTTCTGTGCCG--GCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATG--------------------TGAAGCGTGCCCTG-CGGGACCTGACCATCGGC
TGCTCATCGGACTGATAGTGTTCCGGTAGGATGTGCTATAACATGATATGATGATCTGGTTTTAAACGTTTTTGCATCCCCTTACAGTGGC-TGCATCATCTTCATGC------------CGAAATTCCGGCCACGCCTCCTGAACGCCCGCAATCGCATGATTCCCATGGAGATCTGTCGCTCGCTGTCCCGGAAACTGGACATCGGC

Size

Hit Count

Total Norm

droEle1 - 7 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000490751:647069-647217 -

84.75

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TGCTGATGGCCCTGATGTCCGGCCTGAATCTCCTCTGCCGGCTGGCCATGATCTGCAGCAGGAAACTGCGGGAGCAGATGATCCGCAGTCAGCTGCGATTCATGACCAAGCGGCATGTGCAGCGCGCCCTGCGCGACCTCACCATTGGC

Size

Hit Count

Total Norm

scf7180000491193:1430158-1430306 -

54.59

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCAT-GATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TTTTCGTGGCTGCACTGGTTACCCTAAAGTTCCTTTACCGCCTGGCCACCGTTTTGCATCCTGGAA-TGCGGATTCAGTTGATGCGGGCAAAGACTCGTTTCATGCCCTTGGCACACTTGCAGTTGGCCCTGCGGAACTGCAGCTTTGGA

Size

Hit Count

Total Norm

scf7180000491272:1199079-1199227 -

53.93

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TCTTCATCGCAATGCTGGCGGCCATCAATATCTGCTACCGCCTGGTGCTCTTCTGCTGCGCGGAATTGCGCCTCCAGCTGTTGCGCACGCATCTGCGCGGCATGCCAAAGGCGCATGTGCGCGATGTCCTTGCCAATGCTGGATACGGC

Size

Hit Count

Total Norm

scf7180000491023:927339-927487 -

45.49

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGAC------CTGACCATCGGC
TCATCCTGAGCATTATGTCCGGAATCTCGCTAATCTACAGGATCTCCGTGGTGGCGGGTCCCAAGCTGCGTCACCTTTTACTGCGAGCCCGTTCCCGTTTGGCCGAAAGCGAGGAGGTCG------AACTGGTGGCCAACAAGTGCAACATCGGC

Size

Hit Count

Total Norm

scf7180000491023:956971-956997 +

13.61

TGCTCATGGCCCTGATG----TCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TGCTCATCGGACTGATGGTGTTCCGGT------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000491023:936317-936345 +

10.88

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TGCTTATAGTTACTGTCTTGGGATTGATC------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000491023:957239-957256 +

8.16

Size

Hit Count

Total Norm

None

droRho1 - 8 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000778091:273360-273508 -

84.75

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TGCTGATGGCCCTCATGTCCGGCCTGAATCTCCTTTGCCGGCTGGCGATGATCTGCAGCAGGAATCTGCGGGAGCAGATGATCCGCAGCCAGCTGCGCTTCATGACCAAGCGGCATGTGCAGCGGGCACTGCGCGACCTCACCATCGGC

Size

Hit Count

Total Norm

scf7180000778141:908-1055 +

52.31

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TGTTCATCGCGATGCTGGCGGCCATCAATATCTGCTACCGGCTTCTGCTTTTCTGCTGCGCGGAGTTACGGCTCCAGCTGCTGCGCACCCACT-GCGCGGCATGCCAAGGCGCATGTTCGCGAGGTCCTTGCCAATGCAGGATACGGAG

Size

Hit Count

Total Norm

scf7180000779514:425202-425350 -

51.2

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TCATCCTGAGCATTCTGTCCGGAATCTCGCTGATCTACAGGATCGCCGTGGTTGCGGGTCCCAAGCTTCGTCATCTTTTGCTGCGAGCCCGTTCCCGTTTGGCCGAAAGCGAGGAGGTCGAACTAGTGGCTAACAAGTGCAACATCGGC

Size

Hit Count

Total Norm

scf7180000780212:96960-97108 +

47.46

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TTTTCGTAACTGGACTGGTTTCCCTAAAGTTTCTATACCGCTTGGTAACCGTTTTTTATCCCGGAATGCGGTTCCAATTGATGCGGGCTAGGACCCGCTTTATGCCCAAGTCTCACTTGCAGTTGGCTTTGCGTAACTGCAGTTTTGGA

Size

Hit Count

Total Norm

scf7180000771649:14092-14238 -

45.57

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TTTTCGTAACTAGACTGGTTTCCCTAAAGTTGCTTTACCGCTTGGTAACCGTTTTTTATCCCGGAATGCTATTCCAATTCATGCGGGCTAGGACCCGCTTTATGCCCAAGTCTCTCTTGCAGTTGGCTTTGCGTAACT--GCAGTTGAA

Size

Hit Count

Total Norm

scf7180000779514:434538-434580 +

14.29

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
CCTTTCTGCTCGTGGTTACTGTTTTGGGATTGGTCTGGAGGCT----------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000779514:456159-456185 +

13.61

TGCTCATGGCCCTGATG----TCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TGCTCATCGGACTGATGATGTTCCGGT------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000779514:456401-456418 +

8.16

Size

Hit Count

Total Norm

None

droKik1 - 6 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000302234:53857-54005 +

81.44

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TGCTGATGGCCCTGATGTCCGGCCTGAATCTGCTCTGTCGGCTGGCCATGATCCTGAGCAGTTACCTGCGCGAACAGATGATTCGCAGCCAGTTGCGGTTCATGAGCATGCGGCATGTGCAGCGCGCTTTGCGGGACCTGACCATCGGT

Size

Hit Count

Total Norm

scf7180000302510:284594-284742 -

56.28

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TCCTGATGGCTGCCTTGGTGGCCCTCAAGTTCCTGTACCGCCTGGCCACCATTTTCTATGGGGGCATGCGCTTCCAGTTGATGCGTGCCCGGGCTCGCTTCATGCCCAAGTCGCACCTGCAGCTGGCCTTGCACAACTGCAGCTTTGGC

Size

Hit Count

Total Norm

scf7180000301542:26234-26382 +

54.29

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TGTTCATTGCCATGCTGGCGGGAATCAATCTCTGCTACCGCCTCCTCTTATTCTGCTGCTCCGAGCTGCGCCTGCAGCTGCTGCGCACCCACCTGCGCGGCATGCCAAAGTCCCATGTGCGCGAGGTGCTGTCCACCGTCGGCTACGGC

Size

Hit Count

Total Norm

scf7180000302414:212830-212978 -

52.45

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TCATCCTGAGCATTCTGTCTGGCATCTCGCTGATCTACCGGATCGCCGTGGTGGCGGGTCCCAAACTGCGTCACCTGCTGCTCCGCGCCCGCTCCCGCCTGGCCGAGAGCGAGGAGGTGGAGCTTGTGGCCAACAAGTGCAACATCGGC

Size

Hit Count

Total Norm

scf7180000302414:243911-244107 +

33.29

TGCTCATGGCCCTGATG----TCCG----GTTTGAACCTTCTGTGCCGGCTGGCC---------ATGATTTGCAGCAGGTATCTC-------------------------------------------------------CGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCT-GCGGGACCTGACCATCGGC
TGCTCATTGGACTGATGGTCTTCCGGTATGTTTAGATCTTGTGTGTACTGCGGCCTGTTTTTCTATAATTTTTCGTGTTT---TCCTACAGCGCCTGCATCATCTTTATGCCAAAATTCAGGCCTCGTCTGCTGAATGCTCGCAATCGCATGATTCCCA----------------------TGGAGATTTGTCGCTCGCTATCGCGGAAACTGGACATTGGC

Size

Hit Count

Total Norm

scf7180000302414:221253-221304 +

19.29

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TCCTTCTGG---TGGTCACCGTGCTGGGCCTCATCTGGCGACTGTTTACGCTGTG----------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

droAna3 - 9 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_12903:667658-667806 +

74.16

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC TCCTGATGGCCCTGATGTCCGGCCTGAATTTGGTCTGTCGCGTGGCGATGATTATCAGCAAGACCCTAAGAGAGCAGATGATCCGGAGCCAGTTGAGGTTCATGAAGAAGCGGCATGTCCAGAGGGCGCTGAGGGATCTGACGATCGGG	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
...TGATxGTCCTGATGTCCGGC..............................................................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
........................................................................AGCAGATGCTCCGGAGCAAG.........................................................	20	1	1.00	0.00	1.00	0.00	0.00
...........................................................................................GATGAGGTTCTTGAAGAAG.......................................	19	1	1.00	1.00	0.00	0.00	0.00
....................................................................................................................GTCCTGAGGGCGGTGAGG...............	18	1	1.00	0.00	1.00	0.00	0.00
...................................................................................................................GGTCCAGAGGGCGGTGAG................	18	1	1.00	0.00	0.00	0.00	1.00
TCCTCATGGCCCTTATGTC..................................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
...........................................................................................................................CGGCGCTGAGGGATCAG.........	17	1	1.00	0.00	0.00	1.00	0.00

scaffold_13337:20339816-20339964 +

58.15

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATT-TGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC TGCTGATGACTGTGCTGGTGGGCCTGAAGTTTATCTACCGCCTAGCCACCGTGCTGCATCCGG-GGATTCGCTTTCATTTGATGCGAGCCAGGGGTCGCTTCATGCCCAAATCCCGACTGGAGGAAACATTGCGCAACTGCAGCATTGGC	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
..................................................GTGCTTCATCCGG-GTATT.................................................................................	18	1	3.00	0.00	0.00	0.00	3.00
..................................................GTGCTTCATCCGG-GTATTC................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
..................................................GTGCTTCATCCGG-GGATC.................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
..................................................GTGCTGCATACGG-GAATT.................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
................................................................................GATGCGGGCCAGGGATCGC...................................................	19	1	1.00	0.00	1.00	0.00	0.00
..................................................GGGCTGAATCCGG-GGATT.................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
....GATGTCxGTGCTGGTGGGC...............................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
..................................................GTGCTTCATCCGG-GGAGT.................................................................................	18	1	1.00	0.00	0.00	0.00	1.00

scaffold_13417:1631114-1631262 +

52.97

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC TGTTTATTGCCATGTTGGCTGGAATTAATATTGTTTATCGTTTGGTTTTGTTCTGTTGCTCCGAACTGCGGCTGCAGTTGCTCCGGACACATTTGAGGGGCATGCCCAAGTCGCATGTGCGTGAGGTCCTTTCCAGCGCAGGCTACGGC	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
.........................TAATATTATTTATCTTTT..........................................................................................................	18	2	0.50	0.00	0.00	0.00	0.50

scaffold_13417:377054-377202 +

46.98

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC TCATCCTGAGCATCCTGTCCGGTATCTCGCTCATCTATCGAATCTCTGTGGTGGCTGGACCCAAGCTGCGTCACCTGCTGCTCCGTGCCCGCTCCCGTCTGGCCGAAAGCGAGGAGGTCGAACTGGTGGCCAACAAGTGCAACATCGGT	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
..................................................................................................................AAGTGGAACTGGTGGCCA.................	18	1	2.00	0.00	2.00	0.00	0.00
.........GCATCCTGTCCGGTATCTCGCT......................................................................................................................	22	1	2.00	1.00	0.00	0.00	1.00
........................................................................................CCGCTCCCGTCTGGCCGAAAGCGAGGA..................................	27	1	1.00	0.00	1.00	0.00	0.00
....................................................................................................GGCCGAAAGCCAGGAGGTCGAACTGGT......................	27	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................CTGGCCGAAAGCGAGGAGGTC..............................	21	1	1.00	1.00	0.00	0.00	0.00
.CATCCTGAGCATCCTGTCCG................................................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
....................................................................................................GGCCGAAAGCGAGGAGGTC..............................	19	1	1.00	1.00	0.00	0.00	0.00
...........ATCCTGTCCGGTATCTCGCT......................................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
...................................AATCGAATTTCTGTGGTGGCT.............................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
................................ATCTATCGAATCTCTGTGGT.................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
.................ACCGGTATCTxGCTCATC..................................................................................................................	17	1	1.00	0.00	0.00	1.00	0.00
....CCTGAGCATCCTGTCCGGT..............................................................................................................................	19	1	1.00	0.00	0.00	0.00	1.00

scaffold_13340:7905079-7905265 +

34.71

TGCTCATGGCCCTGATGTCCG--------------GTTTGAACCTTCTGTGCCGGCTGGCCA---TGATTTGCAGCAGGTATCTCCGAGAG-CAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGA------------------------------------CCTGACCATCGGC TGGCTTTGGATTTCTTGCCTCGAGTTAGCACTAAGAGTTGCTCCTTCTTTACAGGTTCTGGTTCATTAT-TTTGGCCACTATCTCTGGCGGGGCTGTGCTCTACTCACTGGTGACTATCATGAT---------------GCCCACCACCCGGGAGACAATCATCAAGCGCTCCTACCGCTCCGGCCAGCGCAAGGAGATCGCC	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
.....................................................................................TGGCGGGGCxGTGCTCT.....................................................................................................	16	1	1.00	0.00	0.00	1.00	0.00
...........................................................................................................................T---------------GCCCACCACCCGGTGGACA.............................................	20	1	1.00	0.00	0.00	1.00	0.00
.........................................................................GGCCACTATCTCTGGCGGGGT.............................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
...........................................................................................................................................GCCTACCACCCGGGAGACC.............................................	19	1	1.00	0.00	0.00	1.00	0.00
................................................................................................................GACTATCCAGAT---------------GCCCAC..........................................................	18	1	1.00	0.00	0.00	0.00	1.00
.....................................................................................................................................................................AGAGCTCCTACCGCACCGG...................	19	1	1.00	0.00	1.00	0.00	0.00

scaffold_13250:3046854-3046901 +

19.05

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC TTCTGATAACTGTGCTGGTGGGGCTGAAGTTTATCTACCGCTTAGCCA-----------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
.............GCTTGTGGGGCTGAAGTG......................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
....GATAACTGxGCTGGTGGCG..............................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00

scaffold_13417:343236-343274 -

17.69

TGCTCATGGCCCTGATG----TCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TGCTCATCGGGCTGATGATCTTCCGGTAAGGATATTATG------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

scaffold_13417:366929-366970 -

14.88

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TGCTGACTGTC------ACCGTTCTGGGTCTTATCTGGCGACTACTCA-----------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

scaffold_13417:342974-342996 -

10.64

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TGTCC------------------------------CGCCGGCTGGA------------------------------------------------------------------------------------------------CATCGGG

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

droBip1 - 6 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000395916:40365-40513 -

74.82

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TGCTCATGGCCCTGATGTCCGGTCTGAACTTGGTCTGTCGCCTGGTGATGATTATCAGTAAGACCTTACGGGAACAGATGATCCGAAGCCAGTTGAGGTTCATGAAGAAGCGGCATGTGCAGAGGGCGCTGAGGGATCTGACGATTGGG

Size

Hit Count

Total Norm

scf7180000396529:74604-74752 -

53.93

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TGTTGATGACTGTGCTGGTCGGCCTAAAGTTCATCTACCGCTTAGCCACCATTCTGCTCCCCGGAATTCGTTTCCACTTGATGCGTGCCAGGGGTCGCTTCATGTCCAAATCCCGCCTAGAGGAAACCCTGGGCAACTGCAGCATTGGC

Size

Hit Count

Total Norm

scf7180000396621:249231-249379 -

52.23

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGC--GTGCCCTGCGGGACCTGACCATCGGC
TGTTTATCGCCATGTTAGCTGCAATTAATATTTTCTATCGTTTGGTCTTATGTTGTTGCTCCGAACTCCGGCTCCAGTTGCTCCGAACGCACCTGAGGGGCATGCCAAAGTCCCATGTGCGCGAAGTCCTTTCCACAGCCGG--CTACGGC

Size

Hit Count

Total Norm

scf7180000396573:107823-107864 +

14.88

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TGCTGACTGTC------ACCGTTCTGGGTCTTATCTGGCGACTACTCA-----------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000396573:128623-128649 +

13.61

TGCTCATGGCCCTGATG----TCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TGCTCATCGGGCTGATGATCTTCCGGT------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

scf7180000396573:128877-128894 +

8.16

Size

Hit Count

Total Norm

None

dp4 - 6 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

chrXL_group1e:10756223-10756371 -

76.15

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TCCTGATAGCCATCATATCCGGCGTGAATATCCTCTTCCGGCTGGCCATGCTGTCCATCAAGAGTCTGCGCGAGAAGATGATCCGCAGCCAGCTGTCCTTCATGACCAAACGACATGTGCAGCGGGCCCTGCGCGACCTCACCATCGGG

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

chrXL_group1e:7121324-7121472 +

58.15

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC---------
TGTTCATCGCCATGCTGTCCGCCCTGAACATCCTGTACCGCCTCGCTCTCGTCTTCTGCTCCCACTTGCGGCTCCAGCTGCTGCGCACCCATCTGCGCGGCATGCCCAAGTCGCATGTCCG---------CGAGGTGCTGTCCACCGCCGGATACGGG

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

chrXR_group8:5347134-5347282 +

52.31

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TGGCAATGACTTTTCTGGCTGGACTCAAGCTGTTCTTCCGCATGATTACCATGTTCAATAGCGGCATACGCTTCCACATTCTGCGGGCCAGAGCCCGTCTCATGCCCAAGTCACATCTGCAGCGCGCACTGCAAAACTGCAGCTTCGGC

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

chrXL_group1e:6780860-6781008 +

49.33

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC TCATCCTCAGCATATTATCGGGCATCTCGCTCATCTACCGCATCGCCGTCGTTGCCGGCCCCAAGCTCCGTCACCTGCTCCTCCGCGCCCGTTCCCGCCTGGCCGAGAGCGAGGAGGTCGAGCAAGTGGCCAACAAGTGCAACATCGGT	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
..............................TCATCTACCGCATCGCCGTC...................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
.........................CTCGCTCATCTACCGCATCGCCGTCG..................................................................................................	26	1	1.00	0.00	0.00	1.00	0.00
................................ATCTACCGCATCGCCGTCGT.................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
...............................................................................................................................GGCCAACAAGTGCAACATCG..	20	1	1.00	0.00	1.00	0.00	0.00
............................................................................................................GCGAGGAGGTCGAGCAAGTGGC...................	22	1	1.00	1.00	0.00	0.00	0.00

chrXL_group1e:6772191-6772326 -

41.57

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCA------TGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC CGTTCCTGTTGATTGTCACCGTTCTGGGTCTCGTCTGGCGACTTCTGACGCTGTTCTTTTACAAAAAGTGAGTAGACGAGTACTCAACCCTTAACCCGTTCGAT-----AACCC--------------CATCCATCCTACAGCTTGACCTTTACC	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
............................TCTCGTCAGGCGGCTTCT.............................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
.......GTTGATTGTCACCGTTCTGGGT..............................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00

chrXL_group1e:6750258-6750453 -

36.93

TGCTCATGGCCCTGATG----TCCGGTTTG----------------------------------------------AAC---------------------------CTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTG-CGGGACCTGACCATCGGC
TGCTGCTCGGCCTGATGGTCTTCCGGTATGTCGCGCCCTCTAGACTGTAACTCAATGTAATTCTAATTGCCGCTTGAATTCCCACAGCGCCTGCATCATCTTTATGCCCAAGTTCCGGCCGCGCCTGC---------TGAATGCCCGCAACCGGATGATACCCATGGAGA----------------------TTTGTCGCTCGCTGTCCCGGAAGCTGGACATTGGC

Size

Hit Count

Total Norm

V112
Male body

V043
Embryo

V051
Head

M022
Male body

droPer1 - 7 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

super_14:190427-190575 -

75.48

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC TCCTGATAGCCATCATATCCGGCGTGAATATCCTCTTCCGGCTGGCCATGCTGTCCATCAAGAGTCTGCGCGAGAAGATGATCCGCAGCCAGCTGTCCTTCATGACCAAACGACATGTGCAGCGGGCCCTTCGCGACCTCACCATCGGG	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.................................................................................................................................TTCGCGACTTCACCACCG..	18	1	2.00	0.00	0.00	0.00	0.00	2.00
.....................................................TCCATCAAGCGTCTGCGCC.............................................................................	19	1	1.00	0.00	0.00	0.00	1.00	0.00

super_13:1432419-1432567 -

56.19

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGA-------AGCGTGCCCTGCGGGACCTGACCATCGGC TGTTCATCGCCATGCTATCCGCCCTGAACATCCTGTACCGAATCGTTCTCGTCTTCTGCTCCCACTTGCGGCTCCAGCTGCTGCGCACCCATCTGCGCGGCATGCCCAAGTCGCATGTCCGCGAGGTGCTGTCCACCGCCGGATACG-------GT	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.....................CCCTGAACATCGTCTACC.....................................................................................................................	18	1	2.00	0.00	0.00	0.00	0.00	2.00
.................................................................................................................................TGTCCACCGCCAGATACG-------AT	20	1	1.00	0.00	0.00	0.00	1.00	0.00
......................CCTGAACTCCCTGTACCG....................................................................................................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00

super_38:345742-345890 -

52.97

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC TGGCAATGACTTTTCTGGCTGGACTCAAGCTGTTCTTCCGCATGATTACCATGTTCAATAGCGGCATACGCTTCCACATTCTGCGGGCCAGAGCCCGTCTCATGCCCAAGTCACATCTGCAGCGCGCCCTGCAAAACTGCAGCTTCGGC	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.........................CAAGCTGTACTTCCGCGT..........................................................................................................	18	1	4.00	0.00	1.00	0.00	0.00	3.00
....................................................................................................................................................C	18	4	0.25	0.00	0.00	0.00	0.00	0.25
...................................................................................................................................CAAAACTGCCGCTTGGGC	18	1	1.00	0.00	0.00	0.00	0.00	1.00
.......................CCCAAGCTGTACTTCCGC............................................................................................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00

super_25:116083-116232 +

47.07

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTG-ACCATCGGC TCATCCTCAGCATATTATCGGGCATCTCGCTCATCTACCGCATCGCCGTCGTTGCCGGCCCCAAGCTCCGTCACCTGCTCCTCCGCGCCCGTTCCCGCCTGGCCGAGAGCGAGGAGGTCGAGCAAAGTGGCCAACAAGTGCAACATCGGT	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.........................CTCGATCATCTACCGGAT...........................................................................................................	18	1	6.00	0.00	0.00	0.00	0.00	6.00
.................................................................CTCCGTCACCTGCTCCTCCGCGCCC............................................................	25	1	3.00	0.00	0.00	0.00	0.00	3.00
................................................................................................................GGAGGTCGAGCxAAGTGGC...................	18	1	3.00	3.00	0.00	0.00	0.00	0.00
....CCTCAGCATATTATCGGGC...............................................................................................................................	19	1	3.00	0.00	0.00	0.00	0.00	3.00
................................ATCTACCGCATCGCCGTCGT..................................................................................................	20	1	2.00	0.00	0.00	0.00	0.00	2.00
...........ATATTATCGGGCATCTCGCT.......................................................................................................................	20	1	2.00	0.00	0.00	0.00	0.00	2.00
..........................................................................................GATCCCxCCTGGCCGAGAGC........................................	19	1	1.00	0.00	1.00	0.00	0.00	0.00
..................................................................................................CTGTGCGAGAGCGAGGAG..................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
.........GCATATTATCGGGCATCTCGCT.......................................................................................................................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
..............................................................................................................GAGGAGGTCGAGGAGAGT......................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
.CATCCTCAGCATATTATCGGGC...............................................................................................................................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
.................................................................CTCCGTCACCTGCTCCTCCGCGCC.............................................................	24	1	1.00	0.00	0.00	0.00	0.00	1.00
...................................................................................................................................CAACAAGTGCAACATCGGT	19	1	1.00	0.00	0.00	0.00	0.00	1.00
......................................CGCTTCGCCGTCGTCGCC..............................................................................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00

super_25:107621-107756 -

40.99

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCA------TGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC CCTTCCTGTTGATTGTCACCGTTCTGGGTCTCGTCTGGCGACTTCTGACGCTGTTCTTTTACAAAAAGTGAGTAGACGAGTACTCAACCCTTAACCCGTTCGAT-----AACC--------------CCATCCATCCTACAGCTTGACCTTTACC	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.......GTTGATTGTCACCGTTCTGG................................................................................................................................	20	1	3.00	0.00	0.00	0.00	0.00	3.00
...............................CGTCTGGCGACTTCTGACGCT.......................................................................................................	21	1	2.00	0.00	0.00	0.00	0.00	2.00
CCTTCCTGTTGATTGTCACC.......................................................................................................................................	20	1	2.00	0.00	0.00	0.00	0.00	2.00
................CACCGTTCTGGGTCTCGTCTGGC....................................................................................................................	23	1	1.00	0.00	1.00	0.00	0.00	0.00
...................CGTTCTGGGTCTCGTCTGGCGA..................................................................................................................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
....CCTGTTGATTGTCACCGTTCTGGGTCT............................................................................................................................	27	1	1.00	0.00	0.00	0.00	0.00	1.00
....................GTTCTGGGTCTCGTCTGGC....................................................................................................................	19	1	1.00	0.00	0.00	0.00	0.00	1.00
.CTTCCTGTTGATTGTCACC.......................................................................................................................................	19	1	1.00	0.00	0.00	0.00	0.00	1.00
......................................CGACTTCTGACGGTGTTCTTT................................................................................................	21	1	1.00	0.00	0.00	0.00	0.00	1.00
...........ATTGTCACCGTTCTGGGTCT............................................................................................................................	20	1	1.00	0.00	0.00	0.00	0.00	1.00
.......................CTGGGTCTCGxCTGGCGGC.................................................................................................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
...........................GTCTCGTCTGGCGACTTCTGA...........................................................................................................	21	1	1.00	0.00	0.00	0.00	0.00	1.00
...........................GTCTCGTCTGGCGACTTCTGG...........................................................................................................	21	1	1.00	0.00	0.00	0.00	0.00	1.00

super_25:86053-86248 -

36.55

TGCTCATGGCCCTGATG----TCCGGTTT----------------------------------------------GAA---------------------------CCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTG-CGGGACCTGACCATCGGC TGCTGCTCGGCCTGATGGTCTTCCGGTATGTCGCGCACTCTAGACTGTAACTCAATGTAATTCTAATTGCCGCTTGAATTCCTACAGCGCCTGCATCATCTTTATGCCCAAGTTCCGGCCGCGCCTGC---------TGAATGCCCGCAACCGGATGATACCCATGGAGA----------------------TTTGTCGCTCGCTGTCCCGGAAGCTGGACATTGGC	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
....................TTCCGGTATGTCGCGCAC.............................................................................................................................................................................................	18	1	2.00	0.00	0.00	0.00	0.00	2.00
.GCTGCTCGGCCTGAAGGC................................................................................................................................................................................................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00

super_7:612695-612751 +

20.41

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
T--------------------------------------------------------------------------------------------TTCATCTCATTTCCACTCCGTTTGTGCAGCGCTCAGTTGTAAAAATGGCCGCCTGT

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

droWil1 - 5 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_181096:8247011-8247159 -

72.83

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC TGCTGATGGCCATCATGTCGGGCCTCAATCTACTCTGTCGCCTGGCCATGATGCTGAGCAAGAGTGTGCGTGAGCAAATGATTCGCAGTCAATTGCGTTTTATGCCCAAACGGCATATCCAACGAGCTCTCAGGGATCTAACCATTGGC	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
................................................................TGTGCGTGAGGAAATGAAT..................................................................	19	1	17.00	16.00	1.00	0.00	0.00
..CTGCTxGCCATCATGTCGG................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
..........................................................CAAGTGGGTGCGTGAGCA.........................................................................	18	1	1.00	0.00	1.00	0.00	0.00
.......................................................GAGAAAGAGTGTGTGTGAGC..........................................................................	20	1	1.00	0.00	1.00	0.00	0.00

scaffold_180916:773451-773599 +

51.65

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC TGCTGATGACTCTTTTGGCCGGCCTTAAGCTGCTCTATCGCGTGGTTATCCTGTTCCATCGTGGCCTACGTTTTCAGTTGGTCTACGCCAAGGCCCGCAACATGACTAAATCGGAATTGGAGAGCGCCTTATGCAATTTCAGTTATGGC	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.....................................................................................................ATGACCAAATCGGATTTGG.............................	19	1	1.00	0.00	1.00	0.00	0.00

scaffold_181096:9196359-9196507 -

50.64

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC TATTCATTGCCATGCTGGCGGCCATTAATATTTTATATCGTTTGCTTCTAATCTGTTGCTCTGAATTGAGATTGCAATTGTTGCGTACCCATTTGAGAGGTATGCCCAAGCATCATGTCCGTCAAGTGTTGGCCAAATCCGGTTATGGT	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.................................................................................................................CATGTGCGTCAAGTGTTTGC................	20	1	1.00	0.00	1.00	0.00	0.00
........................................................................AGCAATTGTTGCGTACCCT..........................................................	19	1	1.00	0.00	1.00	0.00	0.00
...............................................................AATTGAAATTGCAAATGTT...................................................................	19	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................................................CAAGTGTTGGCCAAATCGT........	19	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................ATGTGCGTCAAGTGTTTGCCA..............	21	1	1.00	0.00	0.00	1.00	0.00

scaffold_181096:4807912-4808060 +

45.49

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGC-----GTGCCCTGCGGGACCTGACCATCGGC TCATTCTGAGCATATTGTCGGGCATATCGTTAATCTATCGCATTGCCGTTGTCGTTGGACCCAAATTGCGTCACCTGTTGCTCCGTGCCCGTTCCCGTTTGG---CCGAAAGCGATGAAGTTGAATTGGTGGCCAACAAGTG--TAATATCGGT	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.............................................CCGTTGTCGTTGGACCCAAATTGC.....................................................................................	24	1	4.00	0.00	0.00	0.00	4.00
.................................................TGTTGTTGGACCCAAATTGCGTCACC...............................................................................	26	1	3.00	0.00	0.00	0.00	3.00
....................................ATCGCATTGCCGTTGTCGTTGGACCCA...........................................................................................	27	1	3.00	0.00	0.00	0.00	3.00
..ATTCTGAGCATATTGTCGGGC...................................................................................................................................	21	1	3.00	2.00	1.00	0.00	0.00
....................................ATAGCATTGCCGTTGTTG....................................................................................................	18	1	3.00	0.00	0.00	0.00	3.00
.........................................ATTGCCGTTGTCGTTGGACC.............................................................................................	20	1	2.00	0.00	0.00	0.00	2.00
.........................................ATTGCCGTTGTCGTTGGACCC............................................................................................	21	1	2.00	0.00	0.00	0.00	2.00
...........................................TGCCGTTGTCGTTGGACCCAA..........................................................................................	21	1	2.00	0.00	0.00	0.00	2.00
..............................................CGTTGTCGTTGGACCCAAATTGC.....................................................................................	23	1	2.00	0.00	0.00	1.00	1.00
..........................................................................................................CGAAAGCGATGAAGTTGAATTGGT........................	24	1	2.00	2.00	0.00	0.00	0.00
.................................................................................................................GATGAAGTTGAATTGGTCGCC....................	21	1	1.00	0.00	1.00	0.00	0.00
..........................................TTGCCGTTGTCGTTGGACCCAAAT........................................................................................	24	1	1.00	0.00	0.00	0.00	1.00
.............................................CCGTTGTCGTTGGACCCAAAT........................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
....................................................................................................................AAAGTTGAATTAGTGGCCA...................	19	1	1.00	1.00	0.00	0.00	0.00
....................................................CGTTGGACCCAAATTGCGT...................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
.........................................................................................................................TGAATTAGTGGCCATCAA...............	18	1	1.00	0.00	1.00	0.00	0.00
.................................................................TTGCGTCACCTGTTGCTCCGTGC..................................................................	23	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................................................GAATTGGTGGCCAACAAGTG--T.........	21	1	1.00	0.00	1.00	0.00	0.00
...........ATATTGTCGGGCATATCGTTAA.........................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
.............................................................CGAATTGCGTCATCTGTT...........................................................................	18	1	1.00	0.00	1.00	0.00	0.00
............................GTTAATCTATCGCATTGCCGTTGTCGTT..................................................................................................	28	1	1.00	1.00	0.00	0.00	0.00
......................................CGCATTGCCGTTGTCGTTG.................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00
............................GTTAATCTATCGCATTGC............................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
.......................................................................................................................GTTGAATTAGTGGCCATCAA...............	20	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................................ATGAAGTTGAATTGGTGGCC....................	20	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................................CGAAAGCGATGAAGTTGAATTGGTGGC.....................	27	1	1.00	1.00	0.00	0.00	0.00
.......GAGCATATTGTCGGGCATATC..............................................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
.........................................ATTGCCGTTGTCGTTGGA...............................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
........................................CATTGCCGTTGTCGTTGGACC.............................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
...............................................................AATTGCGTCACCTGTTGCTCCGTGCCC................................................................	27	1	1.00	0.00	0.00	0.00	1.00
................................................................ATTGCTTCACCTGTTGCTCCGTGCCCGT..............................................................	28	1	1.00	0.00	1.00	0.00	0.00
................................................TTGTCGTTGGACCCAAAT........................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
..........................................TTGCCGTTGTCGTTGGACC.............................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
.........................................ATTGCCGTTGTCGTTGGACCCAAC.........................................................................................	24	1	1.00	0.00	0.00	0.00	1.00
..............................................................................................................AGCGATGAAGTTGAATTGGTGGCC....................	24	1	1.00	0.00	1.00	0.00	0.00
..........................................TTGCCGTTGTCGTTGGACCCAAC.........................................................................................	23	1	1.00	0.00	0.00	0.00	1.00
.................................................................................................................................TGGCCAACAAGTG--TACTCT....	19	1	1.00	0.00	1.00	0.00	0.00
.................................................................................................................GATGAAGTTGAATTGGTGGCCAA..................	23	1	1.00	1.00	0.00	0.00	0.00
..........................................TTGCCGTTGTCGTTGGACCCA...........................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
..............................................CGTTGTCGTTGGACCGAAATTGC.....................................................................................	23	1	1.00	0.00	0.00	1.00	0.00
.............................................................CAAATTGCGTCACCTGTTGCTCCGTGCC.................................................................	28	1	1.00	0.00	0.00	0.00	1.00
.................................................................TTGCGTCACCTGTTGCTCCGTGCCCG...............................................................	26	1	1.00	0.00	0.00	0.00	1.00
.....................................TCGCATTGCCGTTGTCGTTGGACCCAAA.........................................................................................	28	1	1.00	0.00	0.00	0.00	1.00
..............................................CGTTGTCGTTGGACCCAA..........................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
............................................GCCGTTGTCGTTGGACCCAAA.........................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
.........................................ATTGCCGTTGTCGTTGGAC..............................................................................................	19	1	1.00	0.00	0.00	1.00	0.00
........................................CGTTGCCGTTGTCGTTGGACCCAAATTG......................................................................................	28	1	1.00	0.00	0.00	0.00	1.00
.......................................................................................................................GTTGAATTAGTGGCCATCA................	19	1	1.00	0.00	1.00	0.00	0.00
..........................................TTGCCGTTGTCGTTGGACCC............................................................................................	20	1	1.00	0.00	0.00	0.00	1.00
.......................................GCATTGCCGTTGTCGTTGGA...............................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
.......................................................................................................................GTTGAATTGGTGGCCAACAAGT.............	22	1	1.00	0.00	1.00	0.00	0.00
.......................................................................................................................GTTGAATTAGTGGCCATC.................	18	1	1.00	0.00	1.00	0.00	0.00

scaffold_181096:4794082-4794137 -

21.02

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC TTCCTATTGACC--ATCACAGTTCTGGGCCTACTTTGGCGCCTGCTGACGCTCTTCTG-------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
...........C--ATCACCGGTCTGGGCCT......................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
.......................CTGGGACTxCTTTGGCGCC...........................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00

droVir3 - 7 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_12726:998444-998592 -

77.47

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC TGCTGATGGCCTTCATGTCCGGCCTGAACCTGCTCTGCCGTCTGGCCATGATGCTCAGCCGGACGCTGCGTGAGCTGATGATACGCAGCCAATTGCGCTTCATGACCAAGCAGCATGTACAGCGCGTTTTCCGGGATCTAACCATCGGT	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
..........................AACGTGCTGTGCCGTCTGG........................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00	0.00

122

scaffold_13049:10957205-10957353 -

59.85

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC TGATAATGGCTTTATTGGCCGGCCTAAAGATTATCTATCGTCTGTTCATACTTTTCCATCGTGGACTGCGCTTTCAGCTGCTGCGCACGCAGTCCCGTTTCATGCAACAATCTTCGTTGAAGTGTGCCTTGCGCGGCTTTAGCTGCGCC	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
....AATGGCTTTATTGGAAGG...............................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00	0.00

scaffold_13042:727898-728046 +

54.96

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC TCTTCATTGCCATGTTGGCAGCCATCAATATTCTGTATCGTCTGTTGCTTGTCTGCTGTCCGGAGCTGCGTCTGCAGCTATTGCGCACCCATTTGCGCGGCATGCCCAAGGCCCATGTGCGTCAGGTGTTGGCCAACGCCGGCTACGGC	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
............................................................CGGAGCTGCGTCTGGAGCA......................................................................	19	1	1.00	0.00	0.00	0.00	0.00	1.00
................................................................................TAGCGCAGCCATTTGCGCG..................................................	19	1	1.00	0.00	1.00	0.00	0.00	0.00
...........AGGTTGGCAxCCATCAATATT.....................................................................................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
............................................................AGGAGCTGCGTCTGAAGC.......................................................................	18	2	0.50	0.00	0.00	0.00	0.50	0.00

109

scaffold_13042:80853-81001 -

47.38

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC TCATTCTGAGCATCTTGTCTGGCATATCGTTGGTTTATCGCATTGCCGTTGTGGTCGGACCCAAGCTGCGTCATCTGCTGCTGCGCGCACGTTCCCGTCTCGCCGAGAGCGAGGAGGTCGAGAAGGTGGCCAACAGGTGCAACATTGGC	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
............................................................CGAAGCTGTGTCATCTGC.......................................................................	18	1	2.00	0.00	0.00	0.00	1.00	1.00
.............CTTGTCTGGCATATCGTTG.....................................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
................................................................................................................GGAGGTCGAGAAGGTGGC...................	18	1	1.00	1.00	0.00	0.00	0.00	0.00
...................................................................................................TCGCCGAGAGCGAGGAGGTCGAGAAGGT......................	28	1	1.00	1.00	0.00	0.00	0.00	0.00
....................................................................................................CGCCGAGAGCGAGGAGGTCGAGAAG........................	25	1	1.00	1.00	0.00	0.00	0.00	0.00
................................................................................................................GGAGGTCGAGAAGGTGGCCAACAGGTG..........	27	1	1.00	0.00	0.00	1.00	0.00	0.00
...............................................GTTGTGGTCGGACCCAAGCTGCGTCATC..........................................................................	28	1	1.00	0.00	0.00	0.00	1.00	0.00
................................................................................................GTCTCGCCGAGAGCGAGGAGGTC..............................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
............................................................................................................GCGAGGAGGTCGAGAAGGTGGC...................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
....TCTGAGCATCTTGTCTGGC..............................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00	0.00
...............................................................AGCTGCGTCATGTGCC......................................................................	16	1	1.00	0.00	1.00	0.00	0.00	0.00

scaffold_13042:244374-244449 +

25.85

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC GGATATTGCTCGTACTGCTC-----------------------------------------------------------------------GTTGGA-CTGATGATATTCCGGTAAGTAAGGCATATTTTAGGGCACGTGCCTGCTAG-	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
............................................................................................TCGGA-CTGATGATATTCC......................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00

scaffold_13042:95067-95118 +

19.05

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC CGTTCCTGTTGGTTGTCACCGTTTTGGGTCTGCTCTGGCGCCTCTTCACGCT-------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
..................CCGTTTTGGGTCTGCTCTGGCGCCT..........................................................................................................	25	1	1.00	0.00	0.00	0.00	0.00	1.00
CGTACCTGTTGGTTGTCCC..................................................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00

scaffold_13042:244913-244942 +

12.93

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
CGTTCGCTGTCCC-----------------------------------------------------------------------------------------------------------------------GCAAACTGGACATCGGT

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

None

droMoj3 - 7 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_6473:9166585-9166733 +

76.81

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TGCTGATGGCCTTCATGTCCGGCCTGAATCTGCTCTGTCGCCTGGCCATGATGCTCAGCCGGACGCTGCGCGAGCTGATGATACGCAGCCAATTGCGCTATATGACCAAACAGCATGTGCAGCACGTCTTCAGGGATCTGACCATCGGC

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

scaffold_6308:421067-421215 -

56.84

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC TGTTCATTGCGATGCTGGCGGCCATCAATATACTCTACCGCCTGCTGCTCGTCTGCTGTCCGGAGCTGCGTCTGCAGCTGCTGCGCACACACCTGCGCGGCATGCCCAAGGCGCATGTGCGCCAGGTGCTCTCCAGTGCCGGCTACGGT	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.........................................................................................CTCCTGCGCGGCACGCCC..........................................	18	1	1.00	0.00	0.00	1.00	0.00
..............................................................GAGCTGGGTCTGGAGCTG.....................................................................	18	3	0.33	0.33	0.00	0.00	0.00
..................................................................AGCGTCTGCAACTGCTGC.................................................................	18	13	0.08	0.08	0.00	0.00	0.00

scaffold_6680:9866461-9866609 +

53.63

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TTCTAATGGCCGTTTTGGCAGGCTTGAAGATCATCTATCGCCTGGTCATCATTTTTCATCGCGGTCTGCGCTTTCAACTGCTGCGCGCGCAAACACGCTTCATGCCCCAATCGACATTGAAACGCGCCATTGCTAATTTTAGTTGCGCC

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

scaffold_6359:1261074-1261222 +

46.73

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGC--ATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC TCATTTTGAGCATCTTGTCGGGCATCTCGTTGGTCTATCGTATTGCCGTTGTTATGGGACCAAAATTGAGGCATCTGCTGCTGCGCGCTCGCTCCCGCTTGGCCGAGAGCGAAGAGGTGGAGAAGGTGGCCAACAGGTGC--AACATTGGC	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
....ATTGAGGATCTTGTCGGG.................................................................................................................................	18	1	3.00	3.00	0.00	0.00	0.00
...GATTGAGCATCTTGTCGGG.................................................................................................................................	19	1	2.00	2.00	0.00	0.00	0.00
....ATTGAGAATCTTGTCGGG.................................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
......................................................................................GTTCGATCCCGCTTGGC................................................	17	1	1.00	0.00	1.00	0.00	0.00
....................................................................................................GGCTGAGAGCGACGAGGT.................................	18	2	0.50	0.50	0.00	0.00	0.00
...GATTGAGCATCTTGTCGG..................................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
.....................................................ATGGGACCAAAATTGAGGCATCTG..........................................................................	24	1	1.00	1.00	0.00	0.00	0.00
.........................................................................................................AGAGGGAAGAGGTGGTGA............................	18	1	1.00	1.00	0.00	0.00	0.00
.....TTGAGGATCTTGTCGGGG................................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
...GATTGAGCATCTTGTCGGGC................................................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
........................TCTCGTTGGTCTATCGTA.............................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
..................................................GTTATGGGACCAAAATTGAGGC...............................................................................	22	1	1.00	1.00	0.00	0.00	0.00

122

scaffold_6500:25261359-25261431 -

31.29

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC T------------------------------------------------TATTAGAAGGACGAATCCCAGACAGCATTGAATCCTCCCCCATTTGAGCATAAGACCCAAACGCCATATGAA----------------------------	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
............................................................CGAATCCCGGATAGCATTG......................................................................	19	1	1.00	0.00	1.00	0.00	0.00

scaffold_6359:1247260-1247302 -

13.61

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC CCTTTCTATTCACAATCACCGTGCTGGGTCTTATCTGGCGACT----------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
............CAATCACCGTGCTGGGTCTTATCTGGC..............................................................................................................	27	1	1.00	1.00	0.00	0.00	0.00

scaffold_6359:1212400-1212426 -

12.93

TGCTCATGGCCCTGATG----TCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TGCTCGTTGGACTGATGATATTCCGGT------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V110
Male body

V056
Unknown

V049
Head

V041
Embryo

droGri2 - 7 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

134

scaffold_14853:5433396-5433544 -

69.52

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TCCTCATGGCGATCATCGCTGGCCTAAATCTGCTCTGTCGCCTAACCATGATGGTCAGCCGGACGCTGCGCGAACTGATGATTCGCAGCCAGTTGCGATTCATGACCAAAGAGCATGTGCAGCGCATCTTTAGCCATTTAACCATCGGC

Size

Hit Count

Total Norm

V109
Male body

scaffold_15203:5994469-5994617 +

56.19

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TCTTCATTGCCATGCTGGCTGCCATCAATATACTCTATCGTCTGTTGCTTGTGTGCTGCCCGGAGCTGCGTCTGCAGCTGCTGCGCACCCATCTGCGCGGCATGCCCAAGTCGCATGTGCGTCAGGTTTTGGCCAGCGCCTGCTATGGC

Size

Hit Count

Total Norm

V109
Male body

scaffold_15110:8359341-8359489 +

54.29

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
TACTTATGGCTCTGCTGGCGGGCCTCAAGCTCATGTATCGTCTAGCTATCGTTTTTCATCGTGGACTACGCTTTCAGCTCCTGCGTGCAAAGTCTCGCTTCATGCCATTCTCATCATTGAAGCGTGCCCTGTGCGAATTTAGCTGCGGT

Size

Hit Count

Total Norm

V109
Male body

scaffold_14853:4220506-4220654 +

48.03

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGAC---CATCGGC TCTTCCTGAGCATATTGTCGGGCATATCGCTTGTCTACCGCGTCGCTGTCGTTGTCGGCCCCAAACTGCGTCACCTGCTGCTCCGTGCCCGATCACGTC---TGGCCGAAAGCGATGAGGTCGAAACGGTGGCAAATCGATGCAACATCGGC	Size	Hit Count	Total Norm	V109 Male body
............................................................................................................AAAGCGATGAGGTCGAAAC.........................	19	1	1.00	1.00
...............................................................AACTGCGTCAGGTGCTGC.......................................................................	18	1	1.00	1.00

126

scaffold_14853:4209689-4209744 -

19.73

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
GCTTTCTGATGATCATGACCATATTGGGTCTTCTCTGGCGCCTGCTTACGCTCTTC---------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V109
Male body

123

scaffold_14853:4185926-4185978 -

18.03

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCA-GCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
GGATATTGCTTGTGCTGCT------------------------------------------------CCTCGGACTGATGATATACCGGTTAGCTACATTT-------------------------------------------------

Size

Hit Count

Total Norm

V109
Male body

155

scaffold_15081:894152-894198 -

15.65

TGCTCATGGCCCTGATGTCCGGTTTGAACCTTCTGTGCCGGCTGGCCATGATTTGCAGCAGGTATCTCCGAGAGCAGATGATACGCAGCCAGTTGCGTTTCATGACCAAACGGCATGTGAAGCGTGCCCTGCGGGACCTGACCATCGGC
CAGTTTTGGTCTTGGTTTCGGTCTTCGTCTCTGTGTCCATCTTGGTC------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V109
Male body

Generated: 04/20/2012 at 05:38:55 EDT