dme-mir-4958- 12- and 20-way alignments

dme-mir-4958	chrX:15974955-15975089 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	CDS

Legend:

   mature strand at position 15975037-15975058
   star strand at position 15974984-15975005
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chrX:15974940-15975104 -	G------------TCCGAACCGTACGATCT------------------------------------------------------------------CTGGCAGCTGCAGTTCCGTTTC------CGGAGCGGGATC-----TGGAACGGGCTCTGGTTCTAGATCAGGATCCAATCATGCACCCGGTCCAGGTACCGCTCCAGGTCCCGTTCCCGGAAACGGTGCCACCGCCAATGCAGCTGCAGCGGCATTCA
droSim1	Unknown	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec1	super_47:33133-33297 -	G------------TCCGAACCGTACGATCT------------------------------------------------------------------CTGGCAGCTGCAGTTCCGTTTC------CGCAGCGGGATC-----TGGCACGGGCTCTGCTTCTAGATCAGGATCCAATCATGCACCCGGTCCAGGTGCCGCTCCATGTCCCGTACCCGGAAACGGAGCCACCGCCAATGCAGCTGCAGCGGCATTCA
droYak2	chrX:10123735-10123899 -	G------------TCCAAATCCCACGATCT------------------------------------------------------------------CTGGCAGCTGCAGTTCCGTTTC------CGCAGCGGGTTC-----TGGAACGGGCTCTGGTTCTGGATCCGGATCCAATATGGCATCCGGTCCTGGTACCGCTCCAGTTCCCGTACCCGGAAACGGTGCCACCGCCAATGCAGCTGCAGCGGCCTTCA
droEre2	scaffold_4690:11103030-11103194 +	G------------TCCAAATCCCACGATCT------------------------------------------------------------------CTGGCAGCTGCAGTTCTGTTTC------CGGAACGGGTTC-----TGGAACGGGCTCTGGTTCGGGATCCGGATCCAATCTGGCACCCGGTCCTGGTACTGCTCCAGTTCCCGTACCCGGTAACGGTGGCACCGCCAATGCAGCTGCAGCGGCATTCA
droAna3	scaffold_13165:312527-312640 -	G------------CATAAGCCACATGGACT---------------------------------------CT-----------------------------------------------------------------------------------------GGATCAGGCTCCGTATCTGCGTCAATTTTGGGCACCGGTCCAGGCCCTTTACATGGAAATAGTGCGACCTCGAATGTCTCTTCTGCACCCTTTA
dp4	chrXL_group1e:9575758-9575916 -	G------------CCCCAATCCCAATGCCA---------------------------------------GCA------------------------ACGGCAGCTGTGGCTCCGCCTCTGCCTCCGGTTCGTCCAGTGGCTCGGCACCGGCTCCGGCTCAGGGTCAGACTCAGGC------CACGACTCAGGCACCG-----------ACTCACGGCAACACTTCGGCC---GGTGGCACAGCCTCGGCGTACT
droPer1	super_22:633193-633346 +	G------------CCCCAATCCCAATGCCA---------------------------------------GCA------------------------ACGGCAGCTGTGGCTCCGCCTC------CGGTTCGTCCAG-----TGGCTCGGCACCGGTTCCGGGCTCAGGGTCAGACTCAGGCCACGACTCAGGCAC-----------CAGCTCACGGCAACACTTCGGCC---GGTGGCACAACCTCGGCGTACT
droWil1	scaffold_181096:10624803-10624892 +	AGGGCAGTCCGAATCCAAATCCCAATCT---------------------GAATGCAAATGCAACGGCTGGTG-----------------------------------------------------------------------------------------------------------------------------------------------GCTCTGGAGCCAGTTCATCTGCTGCCACCGCTGCCTTTA
droVir3	scaffold_12472:523224-523310 +	G------------CCCGAATCCCAATGGCG---------------------------------------GTG---------------------------GCTCCAGCGGTGC-----------------------------------------------------------------------------------------CAGTCTATCTGGCAGTAACAATGTGACTGCCACCGCTACAGCCGCCGCCTTTG
droMoj3	scaffold_6308:2944361-2944510 -	G------------CCCGAATCCCAATGGgGGgGGgtGgGGgGggGGTGGgGGTGGgGGTGCCGCTGCTGCTGGCTCCAACGGTGGCGGAAGTCTCTCGGGCAGCAGCAGCAG--------------------------------------------------------------------------------------------CAATGCAGCCACAGCCAATGCTACAGCCACCGCCGGTGGCGCGGGCTTTG
droGri2	scaffold_15203:4441846-4441932 -	G------------CCCGAATCCCAATGGCT---------------------------------------GTG---------------------------TCTCCAGCGGTGC-----------------------------------------------------------------------------------------CAGTCTCTCTGGCAGCAACACTGTGACTGCCACCGCTACTGCCGCCGCCTTTG

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chrX:15974940-15975104 -	NA	GTCCGAACCGTACGATCTC---TGGCAGCTGCAGTTCCGT---TTCCGGAGCGGGATCT-----------GGAACGGGCTCT---GGTTCTAGATCAGG------------------ATC------------------CA----------ATCATGCACC-CGGTCCAGG-----------TACCGCT---------CCAGGTCCCGT---TCC------CGGAAAC---GGTGCCACCGCCAATG---CAGC------------TGCAGCGGCATTCA
droSim1	chr2R_random:396788-396935 -	3	-------------------------CGGCTGCGGCTCCGG---CTCCGGCTCCGGCTCT-----------G------GCTTT---GAATCTAGATCAGG------------------ATC------------------TG----------GCCATTTGCCATTACCCAGA-----------TGCCCCTTGCCGATTGCCGATTGCCGT---TTG------CCACATG---GCAGCCACGAGCTGTGGAGCCTT------------TGCAGCT--GTGCT
droSec1	super_47:33133-33297 -	4	GTCCGAACCGTACGATCTC---TGGCAGCTGCAGTTCCGT---TTCCGCAGCGGGATCT-----------GGCACGGGCTCT---GCTTCTAGATCAGG------------------ATC------------------CA----------ATCATGCACC-CGGTCCAGG-----------TGCCGCT---------CCATGTCCCGT---ACC------CGGAAAC---GGAGCCACCGCCAATG---CAGC------------TGCAGCGGCATTCA
droYak2	chrX:10123735-10123899 -	5	GTCCAAATCCCACGATCTC---TGGCAGCTGCAGTTCCGT---TTCCGCAGCGGGTTCT-----------GGAACGGGCTCT---GGTTCTGGATCCGG------------------ATC------------------CA----------ATATGGCATC-CGGTCCTGG-----------TACCGCT---------CCAGTTCCCGT---ACC------CGGAAAC---GGTGCCACCGCCAATG---CAGC------------TGCAGCGGCCTTCA
droEre2	scaffold_4690:11103030-11103194 +	1	GTCCAAATCCCACGATCTC---TGGCAGCTGCAGTTCTGT---TTCCGGAACGGGTTCT-----------GGAACGGGCTCT---GGTTCGGGATCCGG------------------ATC------------------CA----------ATCTGGCACC-CGGTCCTGG-----------TACTGCT---------CCAGTTCCCGT---ACC------CGGTAAC---GGTGGCACCGCCAATG---CAGC------------TGCAGCGGCATTCA
droEug1	scf7180000409092:162915-163073 +	1	GTCCGAATCCCACGATTTC---CGGCAGCTGTAGTTCCGG---CTCCGGAGCGGGATCC-----------GGATCGGGTTCC---G------GTTCCGG------------------ATC------------------GA----------ATCTGGGCCC-CGGTCCAGG-----------TACCGTC---------CCAGTTTCAGT---TGC------CGGAAAT---AATGCTACCGCCAATG---CCGC------------AGCAGCTGCCTTTA
droBia1	scf7180000302126:1064767-1064934 +	1	GCCCCAATCCGACGATCTC---CGGCAGCTGCAGCTCCGG---CTCCGGAGCGGGCTCC-----------GGAACGGGTTCC---GGTTCCGGATCGGG------------------ATC------------------GA----------ACCTGGGACC-CGGTCCGGG-----------TACCGCT---------CCTGTTGCCGT---CCC------CGGAAATCCAGGTGCCACCGCCAACG---CCGC------------TGCAGCGGCCTTCT
droTak1	scf7180000415289:31224-31403 -	3	GCCCGAATCCCACGATTTC---CGGCAGCTGCAGCTCTGGCGGCTCCGGAGTGGGTTCC-----------GGAACGGGTTCCGGCGGTTCTGGATCGGG------------------ATC------------------GA----------ACCTGGGACC-CGGTCCGAA-----------TACCGCT---------CCTGTTACCGTTTTACCCGGAGGAGGAAAT---GGTGCCACCGCCAATG---CCGC------------CGCAGCGGCATTCA
droEle1	scf7180000490709:11511-11657 -	2	GTCCGAACCCCACGATCTC---TGGCAGCTGCAGCTCGGG---CTCTGGAGCGGGCTCC-----------GGG---------------------------------------------TC------------------GAACCTGGGGCC----TGGACC-CGGTCCGGG-----------AACCGCT---------CCCGTTCCGGT---ACC------GGGAAAT---AGTGCCACCGCCAACG---CCTC------------CGGCGGGGCATTTA
droRho1	scf7180000779586:28620-28772 +	5	GCCCGAACCCCACGATCTC---CGGCAGCTGCAGCTCGGG---CTCCGGAGCGGGCTCT-----------G---------------------GGTCCGG------------------GTC------------------GAACCTGGGACC----CGGGCC-TGGGCCGGG-----------AGCCGCT---------CCCGTTCCAGT---GCC------GGGCAAC---AGTGCCACCGCCAACG---CGGC------------CGCCGGCGCCTTTA
droFic1	scf7180000453495:241811-241990 -	6	GTCCGAATCCGACGATCTC---CGGCAGCTGCAGTTCCGGAGCATCCGGAGCTGGTTCG-----------GGAACGGGCTCC---G------GCTCCGGCTCCGGATCTGGATCCGGATC------------------GA----------CATTGGGACC-TGGCCCAGG-----------TGCCGCT---------CCAGTGCCAGT---GAC------CGGCAAC---AGTGCGTCGGCCAATG---CAGC------------TGCCGCCGCATTTA
droKik1	scf7180000302344:272406-272546 -	3	GCCCCAATCCCACGATCTC---CGGCAGCTGCAGCTCTGG---CTCCGGCACCGGTTCC-----------G---------------------GTTCCGG------------------TTCGACCATGTGCTCGGTATCGG----------GCTCTG--------------------------------------------GTCCCAGT----AC------CGGCACC---ACTGCCGCGACCAGTA---CTGC------------AGCTGCGGCCTTCA
droAna3	scaffold_13165:312527-312640 -	3	GCATAAGCCACATGGACTC---TGG--------------------------------------------------------------------ATCAGG------------------CTCCG------TATCTGCGTCAA----------TTTTGGG------------------------CACCGGT---------CCAGGCCCTTT---ACA------TGGAAAT---AGTGCGACCTCGAATG---TCTC------------TTCTGCACCCTTTA
droBip1	scf7180000395731:3232-3333 -	3	GCCCAAGCCCTATGGACTG---CGG--------------------------------------------------------------------ATCTGC------------------GTC------------------AA----------TT-------------TTAGG-----------CGCCGGC---------CCAGTCGCTTT---ACC------TAGAAAT---ATTGCTACCTCTAATG---CTTC------------TTCTGCAGCCTTTA
dp4	chrXL_group1e:9575758-9575916 -	2	GCCCCAATCCCAATGCCAGCAACGGCAGCTGTGGCTCCGC---CTCTGCCTCCGGTTCGTCCAGTGGCTCGGCACCGGCTCC---G------GCTCAGG------------------GTC------------------AG----------ACTCAGGCCA-CGACTCAGG-----------CACCGA--------------------C---TCA------CGGCAAC---ACT---TCGGCCGGTG---GCAC------------AGCCTCGGCGTACT
droPer1	super_22:633193-633346 +	2	GCCCCAATCCCAATGCCAGCAACGGCAGCTGTGGCTCCGC---CTCCGGTTCGTCCAGT-----------GGCTCGGCACCG---GTTCCGGGCTCAGG------------------GTC------------------AG----------ACTCAGGCCA-CGACTCAGG-----------CACC--------------------AGC---TCA------CGGCAAC---ACT---TCGGCCGGTG---GCAC------------AACCTCGGCGTACT
droWil1	scaffold_181096:10624772-10624892 +	3	CTGCA----------TCAT---CGGCATCGCCAACTT------ATCAGAAGGGCAGTCC-----------GAATCCAAATCC---CAATCTGAATGCAA------------------ATG------------------CA----------AC--GGCTGG-T-----------------------------------------------------------GGCTCT---GGAGCCAGTTCATCTG---CTGC------------CACCGCTGCCTTTA
droVir3	scaffold_12472:523224-523310 +	2	GCCCGAATCCCAATGGCGG---TGGCTCCAGCGGTGCC------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTCTATC---TGG------CAGTAAC---AATGTGACTGCCACCG---CTAC------------AGCCGCCGCCTTTG
droMoj3	scaffold_6308:2944361-2944510 -	1	GCCCGAATCCCAATGGCGG---CGGCAGCGGCGCCGGTGG---CGGTGGCGGTGCCGCT-----------G---------------------CTGCTGG------------------CTC------------------CA----------AC---------GGTGGCGGAAGTCTCTCGGGCAGCAGC---------AGCAGCAATGC---AGC------C---------------ACAGCCAATG---CTACAGCCACCGCCGGTGGCGCGGGCTTTG
droGri2	scaffold_15203:4433131-4433217 -	3	GCCCGAATCCCAATGGCTG---TGT---------CTCCAG------------------------------------------------------------------------------------------------------------------------------------------------CGGT---------GCCAGTCTCTC---TGG------CAGCAAC---ACTGTGACTGCCACCG---CTAC------------TGCCGCCGCCTTTG

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

G------------TCCGAACCGTACGATCT------------------------------------------------------------------CTGGCAGCTGCAGTTCCGTTTC------CGGAGCGGGATC-----TGGAACGGGCTCTGGTTCTAGATCAGGATCCAATCATGCACCCGGTCCAGGTACCGCTCCAGGTCCCGTTCCCGGAAACGGTGCCACCGCCAATGCAGCTGCAGCGGCATTCA

Size

Hit Count

Total Norm

droSim1

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

droSec1

G------------TCCGAACCGTACGATCT------------------------------------------------------------------CTGGCAGCTGCAGTTCCGTTTC------CGCAGCGGGATC-----TGGCACGGGCTCTGCTTCTAGATCAGGATCCAATCATGCACCCGGTCCAGGTGCCGCTCCATGTCCCGTACCCGGAAACGGAGCCACCGCCAATGCAGCTGCAGCGGCATTCA	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
.....................GTACGATCT------------------------------------------------------------------CTGGCAGCTGC...................................................................................................................................................	20	1	2.00	1.00	1.00	0.00
...................................................................................................GCAGCTGCAGTTCCGTTTC------CGC...............................................................................................................................	22	1	1.00	0.00	1.00	0.00
.....................GTACGATCT------------------------------------------------------------------CTGGCAGCTGCA..................................................................................................................................................	21	1	1.00	0.00	1.00	0.00
................................................................................................................................................................................................................GTACCCGGAAACGGAGCCACC.........................	21	1	1.00	0.00	1.00	0.00
........................................................................................................................................................................................................................................AATGCAGATGCAGxGGCATT..	19	1	1.00	0.00	0.00	1.00
......................................................................................................................................................................................................................................ACAAxGCAGCTGCAGCGGC.....	18	1	1.00	0.00	1.00	0.00
..................................................................................................................................................................................................................................ACCTCCAATxCAGCTGCAGC........	19	1	1.00	0.00	1.00	0.00

droYak2

G------------TCCAAATCCCACGATCT------------------------------------------------------------------CTGGCAGCTGCAGTTCCGTTTC------CGCAGCGGGTTC-----TGGAACGGGCTCTGGTTCTGGATCCGGATCCAATATGGCATCCGGTCCTGGTACCGCTCCAGTTCCCGTACCCGGAAACGGTGCCACCGCCAATGCAGCTGCAGCGGCCTTCA	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
........................................................................................................................................................CTGGTGCCGGATCCGGATC...................................................................................	19	1	2.00	0.00	0.00	0.00	0.00	2.00
..................................................................................................................................................CGGGCTCTGGTTCTGGATCCGG......................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
.....................................................................................................................................GTC-----TGGAGCGGGCTCTGG..................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00	0.00
....................................................................................................................................................................................................................................CGACAATxCAGCTGCAGCGGC.....	20	1	1.00	0.00	1.00	0.00	0.00	0.00
................................................................................................................................................................................................................GTACCCGGAAACGGTGCCCCCGCCAAT...................	27	1	1.00	0.00	0.00	0.00	1.00	0.00
.............................................................................................................................................................TCTGGATCCGGATCCAATATGGCA.........................................................................	24	1	1.00	0.00	0.00	1.00	0.00	0.00

droEre2

G------------TCCAAATCCCACGATCT------------------------------------------------------------------CTGGCAGCTGCAGTTCTGTTTC------CGGAACGGGTTC-----TGGAACGGGCTCTGGTTCGGGATCCGGATCCAATCTGGCACCCGGTCCTGGTACTGCTCCAGTTCCCGTACCCGGTAACGGTGGCACCGCCAATGCAGCTGCAGCGGCATTCA	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.......................................................................................................................................................................................................CCAGTTCCCCTACCAGGT.....................................	18	1	2.00	2.00	0.00	0.00	0.00
............................................................................................................GTTCxGTTTC------CGGAGCGGG.........................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00

droAna3

G------------CATAAGCCACATGGACT---------------------------------------CT-----------------------------------------------------------------------------------------GGATCAGGCTCCGTATCTGCGTCAATTTTGGGCACCGGTCCAGGCCCTTTACATGGAAATAGTGCGACCTCGAATGTCTCTTCTGCACCCTTTA

Size

Hit Count

Total Norm

V105
Male body

V106
Head

V055
Unknown

V039
Embryo

dp4

G------------CCCCAATCCCAATGCCA---------------------------------------GCA------------------------ACGGCAGCTGTGGCTCCGCCTCTGCCTCCGGTTCGTCCAGTGGCTCGGCACCGGCTCCGGCTCAGGGTCAGACTCAGGC------CACGACTCAGGCACCG-----------ACTCACGGCAACACTTCGGCC---GGTGGCACAGCCTCGGCGTACT	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
.........................................................................................................................CTCCGGTTTGTCAAGTGG...................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00

droPer1

G------------CCCCAATCCCAATGCCA---------------------------------------GCA------------------------ACGGCAGCTGTGGCTCCGCCTC------CGGTTCGTCCAG-----TGGCTCGGCACCGGTTCCGGGCTCAGGGTCAGACTCAGGCCACGACTCAGGCAC-----------CAGCTCACGGCAACACTTCGGCC---GGTGGCACAACCTCGGCGTACT	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.............................................................................................................................................................................................................................CTTCGGCC---GGTGGCACAACCT.........	21	1	1.00	0.00	0.00	0.00	0.00	1.00
............................................................................................................................................................................................................................ACTTCGGCC---GGTAGCACT.............	18	1	1.00	0.00	0.00	0.00	1.00	0.00
.......................................................................................................CTGTGGCTCCACCTC------CAGTT.............................................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
..................................................................................................................................................CGGCACCGGTTCCxGGCTCAGGGTC...................................................................................	24	1	1.00	0.00	1.00	0.00	0.00	0.00
.....................................................................................................................................................CACCGGTTCCxGGCTCAGGGTCAGACT..............................................................................	26	1	1.00	0.00	0.00	0.00	0.00	1.00
.............................A---------------------------------------GCA------------------------ACGGCAGCTGTGCCGCC.............................................................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
...................................................................................................................CTC------CGGTTCGTCCAG-----TGGCTC...........................................................................................................	21	1	1.00	0.00	0.00	0.00	0.00	1.00
.................AATCCCAGTGCCA---------------------------------------ACA------------------------AC............................................................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00	0.00

droWil1

AGGGCAGTCCGAATCCAAATCCCAATCT---------------------GAATGCAAATGCAACGGCTGGTG-----------------------------------------------------------------------------------------------------------------------------------------------GCTCTGGAGCCAGTTCATCTGCTGCCACCGCTGCCTTTA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
................................................................GGCTGGTG-----------------------------------------------------------------------------------------------------------------------------------------------GGTCTGGAGAC............................	19	1	1.00	0.00	0.00	1.00	0.00
.................................................................GCTGGTG-----------------------------------------------------------------------------------------------------------------------------------------------GGACTGGAGCCA...........................	19	1	1.00	0.00	1.00	0.00	0.00
............................................................CAACGGCTGCTG-----------------------------------------------------------------------------------------------------------------------------------------------CCTCTG.................................	18	1	1.00	1.00	0.00	0.00	0.00
........................................................AATGGAACTGCTGGTG-----------------------------------------------------------------------------------------------------------------------------------------------GCT....................................	19	1	1.00	0.00	1.00	0.00	0.00

droVir3

G------------CCCGAATCCCAATGGCG---------------------------------------GTG---------------------------GCTCCAGCGGTGC-----------------------------------------------------------------------------------------CAGTCTATCTGGCAGTAACAATGTGACTGCCACCGCTACAGCCGCCGCCTTTG

Size

Hit Count

Total Norm

V116
Male body

V053
Unknown

V047
Embryo

M027
Male body

M028
Head

droMoj3

G------------CCCGAATCCCAATGGgGGgGGgtGgGGgGggGGTGGgGGTGGgGGTGCCGCTGCTGCTGGCTCCAACGGTGGCGGAAGTCTCTCGGGCAGCAGCAGCAG--------------------------------------------------------------------------------------------CAATGCAGCCACAGCCAATGCTACAGCCACCGCCGGTGGCGCGGGCTTTG	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
............................GGGGGTGTxAGGGGGGGGT...............................................................................................................................................................................................................	18	1	2.00	2.00	0.00	0.00	0.00
.............................GGGGGTTGGAGGGGGGGT...............................................................................................................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
......................................GCGGGGGGTGGGGGTGGTG.....................................................................................................................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00
.....................................GAGGGGGTGTxGGGGTGGGG.....................................................................................................................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00
..............................GGGGGTGGGGGGGTGGGG..............................................................................................................................................................................................................	18	3	0.33	0.00	0.00	0.33	0.00
...........................GGGGGGGGGGGGGGGGTG.................................................................................................................................................................................................................	18	6	0.17	0.00	0.17	0.00	0.00
.........................GGGGGGGGGGTGGGGGGGGGGG...............................................................................................................................................................................................................	22	2	0.50	0.00	0.00	0.50	0.00
..............................GGTGGTGGGTGGGGGGTG..............................................................................................................................................................................................................	18	2	0.50	0.00	0.00	0.50	0.00
...............................GGGGTGGTGGGGTGGTGGG............................................................................................................................................................................................................	19	2	0.50	0.00	0.50	0.00	0.00
............................TGGGGGGTGGGGTGGGGG................................................................................................................................................................................................................	18	2	0.50	0.50	0.00	0.00	0.00
........................ATGGCGGGGGGAGGGGGGG...................................................................................................................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
.........................................GGGGGTGGGGATAGGGGT...................................................................................................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
...............................GGGGTGGGGGGGGGGCGGG............................................................................................................................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00
.......................................GTGGGGGTGGGGGTGTGGGT...................................................................................................................................................................................................	20	2	0.50	0.50	0.00	0.00	0.00
...........................GAGGGGGGTGGGGAGGGGG................................................................................................................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
.........................................TAGGGTGGGGGTGGGGGT...................................................................................................................................................................................................	18	2	0.50	0.50	0.00	0.00	0.00
....................................GGGGGGGGGGGGGGGGTGGGGG....................................................................................................................................................................................................	22	2	0.50	0.00	0.50	0.00	0.00
..........................GGCGGGGGGGGGGGGGGGGG................................................................................................................................................................................................................	20	1	1.00	0.00	0.00	1.00	0.00
.............................GGGGGGTTGGGTGGGGGT...............................................................................................................................................................................................................	18	2	0.50	0.50	0.00	0.00	0.00
..............................GGGGGTGGGGAGGGGCTG..............................................................................................................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
.............................................GTGGTGGTGGGTGTGCC................................................................................................................................................................................................	17	1	1.00	0.00	1.00	0.00	0.00
................................GGGTxGGGGGGTGGTGGGGGTGG.......................................................................................................................................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
..........................................AGGGTGGGGCTGGGGGT...................................................................................................................................................................................................	17	1	1.00	0.00	1.00	0.00	0.00
........................................AGGGGGAGGGGGTGGG......................................................................................................................................................................................................	16	1	1.00	0.00	1.00	0.00	0.00
..............................GGGGGTGGGGGGTGGGTG..............................................................................................................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
..................................GTGGGGGGGGGGTGGGGCA.........................................................................................................................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00
...........................GCGGGGGGTGGGTGGGGGG................................................................................................................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
................................................................................................CAGGCAGCGGCAGCAG--------------------------------------------------------------------------------------------..................................................	16	2	0.50	0.00	0.50	0.00	0.00
............................GGGGGTGTxGGGGGGAGGTGG.............................................................................................................................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
..........................................GGGGTGGTGGTGGGGGG...................................................................................................................................................................................................	17	2	0.50	0.00	0.50	0.00	0.00
........................................GGGGTGTxGGGGTGGGGTT...................................................................................................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
...................................TGAGGGGGGGGTGGTGGTGG.......................................................................................................................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
...............................................................................................TCCAGCAGCAGCAGCAG--------------------------------------------------------------------------------------------CA................................................	19	2	0.50	0.00	0.00	0.50	0.00
....................................GGGGGGGGGGGGGGGGTG........................................................................................................................................................................................................	18	6	0.17	0.00	0.17	0.00	0.00
.......................................GGGGGTGGGGGGGTGGGG.....................................................................................................................................................................................................	18	3	0.33	0.00	0.00	0.33	0.00
...................................TGGGGGCGGGGxGGGGGTGG.......................................................................................................................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00
...........................GGCGGGGGTGGTGGGGGG.................................................................................................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
...............................GGGGTGGGGGGTGGGTGTG............................................................................................................................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00
.................................GGTGGGGGGGTGGTGTGG...........................................................................................................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
.................................................................................................CGACAGCAGCAGCAG--------------------------------------------------------------------------------------------CAA...............................................	18	3	0.33	0.00	0.00	0.33	0.00
............................GGGGGGGGGGGGGGGGTG................................................................................................................................................................................................................	18	6	0.17	0.00	0.17	0.00	0.00
...................................TGGGCGGGGGGCGGGGG..........................................................................................................................................................................................................	17	1	1.00	0.00	1.00	0.00	0.00
.........................................GGGGGTGGGGGCGGAGG....................................................................................................................................................................................................	17	1	1.00	0.00	1.00	0.00	0.00
.................................GGGGGTGGGGGGGTGGGG...........................................................................................................................................................................................................	18	3	0.33	0.00	0.00	0.33	0.00
.........................................GTGGGTGGTGGTGGGGG....................................................................................................................................................................................................	17	2	0.50	0.00	0.50	0.00	0.00
........................................GGTGGGTGGGGGTGGGGGTGG.................................................................................................................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..............................GGTGGTGGGGGGTGGGTG..............................................................................................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
............................GGGGTGGTGGTGGGGGG.................................................................................................................................................................................................................	17	2	0.50	0.00	0.50	0.00	0.00
......................................GGGGTGGATxxGGGTGGGGG....................................................................................................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
..........................................GGGGGGGGGGGGGGGGTG..................................................................................................................................................................................................	18	6	0.17	0.00	0.17	0.00	0.00
..................................GTGGGGGGGGTGTGGAGG..........................................................................................................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
..............................GGGGGGGGGGGGGGGGTG..............................................................................................................................................................................................................	18	6	0.17	0.00	0.17	0.00	0.00
............................GGGGGGGTAGGGTGGGGGTG..............................................................................................................................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
...................................TGGGGGGAGGTTGGGGGTGG.......................................................................................................................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
....................................GGGGGGAGGGTGGGGTTG........................................................................................................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
..............................GGGGGGGGGGGGGGGGTGGGGG..........................................................................................................................................................................................................	22	2	0.50	0.00	0.50	0.00	0.00
......................................GGTGTGGGTGGGGGTGGGG.....................................................................................................................................................................................................	19	2	0.50	0.50	0.00	0.00	0.00
...............................AGGGTGGGGGTGGGGTGGGGGTG........................................................................................................................................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
......................CAATGGCGGGGGGAGGGGGGGGGGT...............................................................................................................................................................................................................	25	1	1.00	0.00	0.00	1.00	0.00
......................................GGGGGGGGTGGGTGTGGT......................................................................................................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
.......................................GGGGGTGTxGGGGTGGGGTT...................................................................................................................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00
..........................GGGGGGGGGGGGGGGGTG..................................................................................................................................................................................................................	18	6	0.17	0.00	0.17	0.00	0.00
...............................GCGGTGGGGGGGTGGTGGG............................................................................................................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
...................................TAGGGTGGGGGTGGGGGT.........................................................................................................................................................................................................	18	2	0.50	0.50	0.00	0.00	0.00
....................................GGGGGGGGGGTGGGGGGGGGGG....................................................................................................................................................................................................	22	2	0.50	0.00	0.00	0.50	0.00

droGri2

G------------CCCGAATCCCAATGGCT---------------------------------------GTG---------------------------TCTCCAGCGGTGC-----------------------------------------------------------------------------------------CAGTCTCTCTGGCAGCAACACTGTGACTGCCACCGCTACTGCCGCCGCCTTTG

Size

Hit Count

Total Norm

V109
Male body

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image		None
UNAFold Image		None

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image