dme-mir-4952- Best orthologs

dme-mir-4952	chr3R:18306534-18306660 +	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	CDS

Legend:

   mature strand at position 18306569-18306591
   star strand at position 18306610-18306630
   mutations
   read mismatches

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Species	Coordinate	Source	Confidence	Alignment
dm3	chr3R:18306519-18306675 +		1	CGCCGGCGAGTGGTTATCCGGGTGCGCTGGACGATCTGATCTTCTCGGGAGCCGGATCCGGATGTCGCGGCGACGACGAGGACGAGTGCACGCCGCCATTCGAATCGGGTAGCGGGGATGATCTCATAACACCGGTCTACGTGCCGCCCACCAAGCA
droSim1	chr3R:18115675-18115831 +	LASTZ	1	CGCCGGCGAGTGGTTATCCGGGTGCGCTGGACGATCTGATCTTCTCGGGAGCCGGATCCGGATGTCGCGGCGACGACGAGGACGAGTGCACGCCGCCATTCGAATCGGGTAGCGGGGATGATCTCATAACACCGGTCTACGTGCCGCCCACCAAGCA
droSec1	super_0:18660821-18660977 +	LASTZ	1	CGCCGGCGAGTGGTTATCCGGGTGCGCTGGACGATCTGATATTCTCGGGAGCCGGATCCGGATGTCGCGGCGACGACGAGGACGATTGCACGCCGCCATTCGAATCGGGTAGCGGGGATGATCTCATAACACCAGTCTACGTGCCGCCCACCAAGCA
droYak2	chr3R:19151970-19152126 +	LASTZ	1	CGCCGGCGAGTGGTTATCCGGGTGCGCTGGACGATCTGATCTTCTCGGGAGCCGGATCCGGATGTCGCGGCGACGACGAGGACGAGTGCACGCCGCCATTCGAATCGGGAAGCGGAGATGATCTCATAACACCGGTCTACGTGCCGCCCACCAAGCA
droEre2	scaffold_4820:9770831-9770987 -	LASTZ	1	CGCCGGCGAGTGGTTATCCGGGTGCGCTGGACGATCTGATCTTCTCGGGAGCCGGATCCGGATGTCGCGGCGACGACGAGGACGAGTGCACGCCGCCATTCGAATCGGGAAGCGGGGATGATCTCATAACACCGGTCTACGTGCCGCCCACCAAGCA
droEug1	scf7180000409768:430134-430290 +	LASTZ	4	CGCCGGCGAGTGGTTATCCGGGTGCGCTGGACGATTTGATCTTCTCGGGAGCCGGATCCGGATGTCGTGGCGATGACGAGGACGAATGTACGCCGCCATTCGAATCGGGAAGCGGGGATGATCTAATAACGCCTGTATATGTGCCGCCCACCAAGCA
droBia1	scf7180000302402:5423903-5424059 -	LASTZ	4	CGCCGGCGAGTGGTTATCCGGGTGCGCTGGACGATCTGATCTTCTCGGGAGCCGGATCCGGATGTCGCGGCGACGACGAGGACGAGTGCACGCCGCCATTCGAATCGGGTAGCGGGGACGATCTGATCACACCGGTGTATGTGCCGCCCACCAAGCA
droTak1	scf7180000415711:717369-717525 -	LASTZ	4	CGCCGGCGAGTGGTTATCCGGGTGCGCTGGACGATCTGATCTTCTCGGGAGCCGGATCCGGATGTCGCGGCGACGACGAGGACGAGTGCACGCCGCCATTCGAATCGGGAAGCGGGGATGATCTGATCACGCCGGTTTATGTGCCGCCCACCAAGCA
droEle1	scf7180000491280:4470522-4470678 -	LASTZ	4	CGCCGGCGAGTGGTTATCCGGGTGCGCTGGACGATCTGATCTTCTCGGGAGCCGGATCCGGATGTCGTGGCGATGACGAGGACGAGTGCACGCCACCGTTTGAGTCCGGAAGCGGAGATGATCTGATAACGCCGGTATATGTGCCGCCCACCAAGCA
droRho1	scf7180000779677:159358-159514 +	LASTZ	4	CGCCGGCAAGTGGTTATCCGGGTGCGCTGGACGATCTGATCTTCTCGGGAGCCGGATCCGGATGTCGCGGCGATGACGAGGACGAGTGCACGCCGCCATTTGAGTCCGGGAGCGGGGATGATCTGATCACGCCGGTGTATGTGCCGCCCACCAAGCA
droFic1	scf7180000454106:1451802-1451958 +	LASTZ	4	CGCCGGCAAGTGGTTATCCTGGTGCGCTGGACGACCTGATCTTCTCGGGAGCCGGATCCGGATGCCGCGGCGATGACGAGGACGAGTGCACGCCGCCGTTCGAATCGGGAAGCGGGGACGATCTGATCACGCCGGTCTACGTGCCGCCCACCAAGCA
droKik1	scf7180000302706:1531163-1531319 +	LASTZ	5	CGCCGGCGAGTGGTTTCCCCGGTGCCTTAGACGATCTGATATTCTCTGGAGCCGGGTCAGGGTGTCGCGGCGACGACGAGGACGAGTGCACGCCGCCCTTCGAGTCGGGCAGCGGCGATGACCTAATCACGCCCGTCTATGTGCCGCCCACCAAGCA
droAna3	scaffold_12911:5347592-5347748 +	LASTZ	5	CTCCGGCGAGTGGCTATCCGGGTGCCCTGGACGATCTGATCTTCTCGGGAGCGGGATCCGGGTGCCGGGGCGATGACGAGGACGAGTGCACGCCACCCTTCGAGTCGGGCAGCGGGGACGACCTGATCACTCCGGTGTATGTACCGCCCACCAAGCA
droBip1	scf7180000396583:493201-493357 -	LASTZ	5	CTCCGGCGAGTGGCTATCCGGGTGCCCTAGATGATCTGATCTTCTCGGGAGCGGGATCCGGGTGCCGTGGCGACGACGAGGACGAGTGCACGCCGCCCTTCGAGTCGGGCAGTGGAGACGATCTGATCACTCCGGTGTATGTACCGCCCACGAAGCA
dp4	chr2:13773155-13773311 -	LASTZ	5	CGCCGGCCAGCGGCTATCCCGGCACCATTGACGATCTGATCTTCTCCGGGGCCGGGTCCGGGTGCCGCGGCGACGACGAGGACGAGTGCACACCGCCCTTCGAGTCGGGCAGCGGCGATGACCTCATCACGCCCGTGTATGTGCCACCCACCAAGCA
droPer1	super_0:6673715-6673871 +	LASTZ	5	CGCCGGCCAGCGGCTATCCCGGCACCATTGACGATCTGATCTTCTCCGGGGCCGGGTCCGGGTGCCGCGGCGACGACGAGGACGAGTGCACACCGCCCTTCGAGTCGGGCAGCGGCGATGACCTCATCACGCCCGTGTATGTGCCACCCACCAAGCA
droWil1	scaffold_181089:2782020-2782176 +	LASTZ	5	CGCCGGCCAGTGGCTATCCTGGGGCCATAGATGATCTTATATTCTCCGGTGCCGGATCCGGTTGTCGCGGCGACGATGAAGACGAATGTACGCCGCCCTTCGAGTCGGGCAGTGGAGATGATCTAATCACACCTGTCTATGTGCCTCCGACAAAACA
droVir3	scaffold_12822:645540-645696 -	LASTZ	5	CGCCTGCGAGCGGCTATCCGGGCGCCATAGACGATCTGATCTTCTCCGGGGCCGGGTCCGGTTGTCGCGGCGACGACGAGGACGAATGCACGCCCCCCTTCGAGTCGGGCAGCGGGGATGACCTAATAACGCCCGTCTATGTGCCGCCCACCAAGCA
droMoj3	scaffold_6540:33300209-33300365 -	LASTZ	5	CGCCGGCTAGTGGCTATCCGGGCGCCATAGACGACCTGATCTTCTCCGGAGCCGGATCTGGGTGTCGCGGCGACGACGAGGATGAATGCACGCCGCCCTTCGAGTCGGGCAGTGGGGATGACCTGATCACACCCGTCTATGTGCCGCCCACCAAACA
droGri2	scaffold_15074:3142694-3142850 +	LASTZ	5	CGCCGGCGAGTGGTTATCCGGGTGCGATAGACGATCTGATCTTCTCCGGTGCGGGATCCGGGTGTCGCGGCGACGATGAGGACGAATGCACGCCGCCCTTCGAGTCGGGCAGCGGGGATGATCTAATTACGCCCGTCTATGTGCCACCCACCAAACA

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species	Alignment
dm3	CGCCGGCGAGTGGTTATCCGGGTGCGCTGGACGATCTGATCTTCTCGGGAGCCGGATCCGGATGTCGCGGCGACGACGAGGACGAGTGCACGCCGCCATTCGAATCGGGTAGCGGGGATGATCTCATAACACCGGTCTACGTGCCGCCCACCAAGCA
droSim1	CGCCGGCGAGTGGTTATCCGGGTGCGCTGGACGATCTGATCTTCTCGGGAGCCGGATCCGGATGTCGCGGCGACGACGAGGACGAGTGCACGCCGCCATTCGAATCGGGTAGCGGGGATGATCTCATAACACCGGTCTACGTGCCGCCCACCAAGCA
droSec1	CGCCGGCGAGTGGTTATCCGGGTGCGCTGGACGATCTGATATTCTCGGGAGCCGGATCCGGATGTCGCGGCGACGACGAGGACGATTGCACGCCGCCATTCGAATCGGGTAGCGGGGATGATCTCATAACACCAGTCTACGTGCCGCCCACCAAGCA
droYak2	CGCCGGCGAGTGGTTATCCGGGTGCGCTGGACGATCTGATCTTCTCGGGAGCCGGATCCGGATGTCGCGGCGACGACGAGGACGAGTGCACGCCGCCATTCGAATCGGGAAGCGGAGATGATCTCATAACACCGGTCTACGTGCCGCCCACCAAGCA
droEre2	CGCCGGCGAGTGGTTATCCGGGTGCGCTGGACGATCTGATCTTCTCGGGAGCCGGATCCGGATGTCGCGGCGACGACGAGGACGAGTGCACGCCGCCATTCGAATCGGGAAGCGGGGATGATCTCATAACACCGGTCTACGTGCCGCCCACCAAGCA
droEug1	CGCCGGCGAGTGGTTATCCGGGTGCGCTGGACGATTTGATCTTCTCGGGAGCCGGATCCGGATGTCGTGGCGATGACGAGGACGAATGTACGCCGCCATTCGAATCGGGAAGCGGGGATGATCTAATAACGCCTGTATATGTGCCGCCCACCAAGCA
droBia1	CGCCGGCGAGTGGTTATCCGGGTGCGCTGGACGATCTGATCTTCTCGGGAGCCGGATCCGGATGTCGCGGCGACGACGAGGACGAGTGCACGCCGCCATTCGAATCGGGTAGCGGGGACGATCTGATCACACCGGTGTATGTGCCGCCCACCAAGCA
droTak1	CGCCGGCGAGTGGTTATCCGGGTGCGCTGGACGATCTGATCTTCTCGGGAGCCGGATCCGGATGTCGCGGCGACGACGAGGACGAGTGCACGCCGCCATTCGAATCGGGAAGCGGGGATGATCTGATCACGCCGGTTTATGTGCCGCCCACCAAGCA
droEle1	CGCCGGCGAGTGGTTATCCGGGTGCGCTGGACGATCTGATCTTCTCGGGAGCCGGATCCGGATGTCGTGGCGATGACGAGGACGAGTGCACGCCACCGTTTGAGTCCGGAAGCGGAGATGATCTGATAACGCCGGTATATGTGCCGCCCACCAAGCA
droRho1	CGCCGGCAAGTGGTTATCCGGGTGCGCTGGACGATCTGATCTTCTCGGGAGCCGGATCCGGATGTCGCGGCGATGACGAGGACGAGTGCACGCCGCCATTTGAGTCCGGGAGCGGGGATGATCTGATCACGCCGGTGTATGTGCCGCCCACCAAGCA
droFic1	CGCCGGCAAGTGGTTATCCTGGTGCGCTGGACGACCTGATCTTCTCGGGAGCCGGATCCGGATGCCGCGGCGATGACGAGGACGAGTGCACGCCGCCGTTCGAATCGGGAAGCGGGGACGATCTGATCACGCCGGTCTACGTGCCGCCCACCAAGCA
droKik1	CGCCGGCGAGTGGTTTCCCCGGTGCCTTAGACGATCTGATATTCTCTGGAGCCGGGTCAGGGTGTCGCGGCGACGACGAGGACGAGTGCACGCCGCCCTTCGAGTCGGGCAGCGGCGATGACCTAATCACGCCCGTCTATGTGCCGCCCACCAAGCA
droAna3	CTCCGGCGAGTGGCTATCCGGGTGCCCTGGACGATCTGATCTTCTCGGGAGCGGGATCCGGGTGCCGGGGCGATGACGAGGACGAGTGCACGCCACCCTTCGAGTCGGGCAGCGGGGACGACCTGATCACTCCGGTGTATGTACCGCCCACCAAGCA
droBip1	CTCCGGCGAGTGGCTATCCGGGTGCCCTAGATGATCTGATCTTCTCGGGAGCGGGATCCGGGTGCCGTGGCGACGACGAGGACGAGTGCACGCCGCCCTTCGAGTCGGGCAGTGGAGACGATCTGATCACTCCGGTGTATGTACCGCCCACGAAGCA
dp4	CGCCGGCCAGCGGCTATCCCGGCACCATTGACGATCTGATCTTCTCCGGGGCCGGGTCCGGGTGCCGCGGCGACGACGAGGACGAGTGCACACCGCCCTTCGAGTCGGGCAGCGGCGATGACCTCATCACGCCCGTGTATGTGCCACCCACCAAGCA
droPer1	CGCCGGCCAGCGGCTATCCCGGCACCATTGACGATCTGATCTTCTCCGGGGCCGGGTCCGGGTGCCGCGGCGACGACGAGGACGAGTGCACACCGCCCTTCGAGTCGGGCAGCGGCGATGACCTCATCACGCCCGTGTATGTGCCACCCACCAAGCA
droWil1	CGCCGGCCAGTGGCTATCCTGGGGCCATAGATGATCTTATATTCTCCGGTGCCGGATCCGGTTGTCGCGGCGACGATGAAGACGAATGTACGCCGCCCTTCGAGTCGGGCAGTGGAGATGATCTAATCACACCTGTCTATGTGCCTCCGACAAAACA
droVir3	CGCCTGCGAGCGGCTATCCGGGCGCCATAGACGATCTGATCTTCTCCGGGGCCGGGTCCGGTTGTCGCGGCGACGACGAGGACGAATGCACGCCCCCCTTCGAGTCGGGCAGCGGGGATGACCTAATAACGCCCGTCTATGTGCCGCCCACCAAGCA
droMoj3	CGCCGGCTAGTGGCTATCCGGGCGCCATAGACGACCTGATCTTCTCCGGAGCCGGATCTGGGTGTCGCGGCGACGACGAGGATGAATGCACGCCGCCCTTCGAGTCGGGCAGTGGGGATGACCTGATCACACCCGTCTATGTGCCGCCCACCAAACA
droGri2	CGCCGGCGAGTGGTTATCCGGGTGCGATAGACGATCTGATCTTCTCCGGTGCGGGATCCGGGTGTCGCGGCGACGATGAGGACGAATGCACGCCGCCCTTCGAGTCGGGCAGCGGGGATGATCTAATTACGCCCGTCTATGTGCCACCCACCAAACA

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

Small RNA-seq read pileup

Species

Alignment

droSim1

CGCCGGCGAGTGGTTATCCGGGTGCGCTGGACGATCTGATCTTCTCGGGAGCCGGATCCGGATGTCGCGGCGACGACGAGGACGAGTGCACGCCGCCATTCGAATCGGGTAGCGGGGATGATCTCATAACACCGGTCTACGTGCCGCCCACCAAGCA	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
..................................................GCCGGATCCGGATGTCGC.........................................................................................	18	1	39.00	0.00	38.00	1.00	0.00
..................................................GCCGGATCCGGATGTCGCGGC......................................................................................	21	1	34.00	0.00	32.00	2.00	0.00
.................................................AGCCGGATCCGGATGTCGCGGC......................................................................................	22	1	15.00	0.00	13.00	2.00	0.00
..................................................GCCGGATCCGGATGTCGCGGCG.....................................................................................	22	1	14.00	0.00	14.00	0.00	0.00
..................................................GCCGGATCCGGATGTCGCGG.......................................................................................	20	1	12.00	0.00	11.00	1.00	0.00
..................................................GCCGGATCCGGATGTCGCG........................................................................................	19	1	10.00	0.00	10.00	0.00	0.00
.................................................AGCCGGATCCGGATGTCGCGGCG.....................................................................................	23	1	8.00	0.00	8.00	0.00	0.00
..................................................GCCGGATCCGGATGTCGT.........................................................................................	18	1	6.00	0.00	6.00	0.00	0.00
..................................................GCCGGATCCGGATGTCGTGG.......................................................................................	20	1	3.00	0.00	3.00	0.00	0.00
.................................................................CGCTTCGACGACGAGGAC..........................................................................	18	1	3.00	0.00	0.00	0.00	3.00
.........................................................................................ACGCCGCCATTCGAATCGGGTAG.............................................	23	1	3.00	0.00	3.00	0.00	0.00
............................CGACGATCTGACCTTCTC...............................................................................................................	18	1	2.00	0.00	0.00	0.00	2.00
...............................CGACCTAATCTTCTCGGG............................................................................................................	18	1	2.00	0.00	0.00	0.00	2.00
..................................................GCCGGATCCGGATGTCGCGGCGA....................................................................................	23	1	2.00	0.00	2.00	0.00	0.00
.........................................................................CGACGAGGACGAGTGCAC..................................................................	18	1	2.00	0.00	2.00	0.00	0.00
......................................................GATCCGGAxGTCGCGACGA....................................................................................	18	1	2.00	0.00	2.00	0.00	0.00
..................................................GCCGGATCCGGATGTCGCGT.......................................................................................	20	1	2.00	0.00	2.00	0.00	0.00
..................................................GCCGGATCCGGATGTCGCGAC......................................................................................	21	1	2.00	0.00	2.00	0.00	0.00
..................................................GCCGGATCCGGATGTCGCGGCGT....................................................................................	23	1	2.00	0.00	2.00	0.00	0.00
...................................................................CGGCAAGGACGAGGACGAG.......................................................................	19	1	1.00	0.00	0.00	1.00	0.00
...........................................................................................GCCGCTATTCGAATCGGGTAGT............................................	22	1	1.00	0.00	1.00	0.00	0.00
..................................................GCCGGATCCGGATGTCGG.........................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
.................................................AGCCGGATCCGGATGTCGCG........................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
..................................................GCCGGATCCGGATGTCGCGGG......................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
..................................................GCCGGATCCGGATGTCGTT........................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
..................................................GCCGGATCCGGATGTCGCGGAT.....................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.................................................AGCCGGATCCGGATGTCGCGGCGAT...................................................................................	25	1	1.00	0.00	1.00	0.00	0.00
..................................................GCCGGATCCGGATGTCGCGGCT.....................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
...........................................................................................GCCGCCATTCGAATCGGGGAG.............................................	21	1	1.00	0.00	1.00	0.00	0.00
...................................................................CGACGACGAAGAGGACGA........................................................................	18	1	1.00	0.00	0.00	1.00	0.00
..................................................GCCGGATCCGGATGTCGCTC.......................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
...................................................CCGGATCCGGATGTCGCG........................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
..................................................TCCGGATCCGGATGTCGCGGC......................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
..................................................................ACAGCGACGACGAGGACG.........................................................................	18	1	1.00	0.00	1.00	0.00	0.00
..................................................GCCGGATCCGGATGTCGCT........................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
..................................................GCCAGATCCGGATGTCGCGGCG.....................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.................................................AGCCGGATCCGGATGTCGCTGC......................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
..................................................GCCGGATCCGGATGTCGCGGCGG....................................................................................	23	1	1.00	0.00	1.00	0.00	0.00
...........................................................................................GCCGCCATTCGAATCGGGTAG.............................................	21	1	1.00	0.00	1.00	0.00	0.00
..................................................GCCGGATCCGGATGTCGCA........................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
...................................................................CGGCGACGACAAGGACAA........................................................................	18	1	1.00	0.00	1.00	0.00	0.00
.................................................AGCCGGATCCGGATGTCGCGAC......................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.................................................AGCCGGATCCGGATGTCGCGGA......................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
...........................................................................................GCCGCCATTCGAATCGGGTGG.............................................	21	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................................................GGTCTACCTGACGCCCACC.....	19	1	1.00	0.00	1.00	0.00	0.00
..................................................GCCGGATCCGGATGTCGCGGCA.....................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
..................................................CCCGGATCCGGATGTCGCGGC......................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................CGCCGCCATTCGAATCGGGTAG.............................................	22	1	1.00	0.00	1.00	0.00	0.00
.........................CATGGACGATCTGATCTTC.................................................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
.................................................AGCCGGATCCGGATGTCGCGG.......................................................................................	21	1	1.00	0.00	1.00	0.00	0.00

droSec1

CGCCGGCGAGTGGTTATCCGGGTGCGCTGGACGATCTGATATTCTCGGGAGCCGGATCCGGATGTCGCGGCGACGACGAGGACGATTGCACGCCGCCATTCGAATCGGGTAGCGGGGATGATCTCATAACACCAGTCTACGTGCCGCCCACCAAGCA	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
..................................................GCCGGATCCGGATGTCGCGG.......................................................................................	20	1	146.00	10.00	0.00	136.00
.................................................AGCCGGATCCGGATGTCGCGG.......................................................................................	21	1	52.00	1.00	0.00	51.00
..................................................GCCGGATCCGGATGTCGCGGT......................................................................................	21	1	20.00	1.00	0.00	19.00
..................................................GCCGGATCCGGATGTCGCGT.......................................................................................	20	1	20.00	0.00	0.00	20.00
..................................................GCCGGATCCGGATGTCGCGGC......................................................................................	21	1	12.00	0.00	0.00	12.00
..................................................GCCGGATCCGGATGTCGCGGCGA....................................................................................	23	1	9.00	0.00	1.00	8.00
..................................................GCCGGATCCGGATGTCGCGGCG.....................................................................................	22	1	9.00	0.00	1.00	8.00
.................................................AGCCGGATCCGGATGTCGCGGCGA....................................................................................	24	1	8.00	0.00	2.00	6.00
..................................................GCCGGATCCGGATGTCGCGTT......................................................................................	21	1	8.00	0.00	0.00	8.00
..................................................GCCGGATCCGGATGTCGTT........................................................................................	19	1	7.00	0.00	0.00	7.00
..................................................GCCGGATCCGGATGTCGC.........................................................................................	18	1	7.00	0.00	0.00	7.00
..................................................GCCGGATCCGGATGTCGCG........................................................................................	19	1	6.00	0.00	0.00	6.00
.................................................AGCCGGATCCGGATGTCGCGGC......................................................................................	22	1	5.00	0.00	0.00	5.00
.................................................AGCCGGATCCGGATGTCGCGGCG.....................................................................................	23	1	4.00	0.00	0.00	4.00
...........................................................................................GCCGCCATTCGAATCGGGTAGA............................................	22	1	4.00	1.00	0.00	3.00
..................................................GCCGGATCCGGATGTCGCGA.......................................................................................	20	1	3.00	0.00	0.00	3.00
..................................................GCCGGATCCGGATGTCGCGGCGTT...................................................................................	24	1	2.00	0.00	0.00	2.00
.................................................AGCCGGATCCGGATGTCGCG........................................................................................	20	1	2.00	0.00	0.00	2.00
..................................................GCCGGATCCGGATGTCGCGGTT.....................................................................................	22	1	2.00	0.00	0.00	2.00
.................................................AGCCGGATCCGGATGTCGCGT.......................................................................................	21	1	2.00	0.00	0.00	2.00
..................................................GCCGGATCCGGATGTCGAT........................................................................................	19	1	2.00	0.00	0.00	2.00
.................................................AGCCGGATCCGGATGTCGCGGA......................................................................................	22	1	2.00	0.00	0.00	2.00
..................................................GCCGGATCAGGATGTCGCGG.......................................................................................	20	1	1.00	0.00	0.00	1.00
..................................................GCCGGATCCGGACGTCGCGGC......................................................................................	21	1	1.00	0.00	0.00	1.00
.................................................GGCCGGATCCGGATGTCGCGGC......................................................................................	22	1	1.00	0.00	0.00	1.00
..................................................GCCGGATCCGGATCTCGCGGT......................................................................................	21	1	1.00	0.00	0.00	1.00
..................................................GCCGGATCCGGATGTCGCTG.......................................................................................	20	1	1.00	0.00	0.00	1.00
..................................................GCCGGAACCGGATGTCGCGT.......................................................................................	20	1	1.00	0.00	0.00	1.00
..................................................GCCGGATCCGGATGTCGCGGAT.....................................................................................	22	1	1.00	0.00	0.00	1.00
..................................................GCCGGATCCGGATGTCGT.........................................................................................	18	1	1.00	0.00	0.00	1.00
.................................................ATCCGGATCCGGATGTCGCGG.......................................................................................	21	1	1.00	0.00	0.00	1.00
..................................................GCCGGATCCGGATGTCGCGGCT.....................................................................................	22	1	1.00	0.00	0.00	1.00
.................................................................ACCGGCGACGACGAGGAC..........................................................................	18	1	1.00	0.00	0.00	1.00
.................................................AGCCGGATCCGGATGTCGCGGT......................................................................................	22	1	1.00	0.00	0.00	1.00
.................................................AGCCGGATCCGGATGTCCGG........................................................................................	20	1	1.00	0.00	0.00	1.00
..................................................GCCGGATCCGGATGTCGCGAT......................................................................................	21	1	1.00	0.00	0.00	1.00
..................................................GCCGGAACCGGATGTCGCGG.......................................................................................	20	1	1.00	0.00	0.00	1.00
.................................................AGCCGGATCCGGATGTCGCGGTA.....................................................................................	23	1	1.00	0.00	0.00	1.00
.................................................AGCCGGATCCGGATGTCGTT........................................................................................	20	1	1.00	0.00	0.00	1.00
..................................................GCCGGATCCGGATGTCGCTT.......................................................................................	20	1	1.00	0.00	0.00	1.00
...........................................................................................GCCGCCATTCGAATCGGGTAGT............................................	22	1	1.00	0.00	1.00	0.00
.................................................AGCCGGATCCGGATGTCGCGGCA.....................................................................................	23	1	1.00	0.00	0.00	1.00
.................................................AGCCGGATCCGGATGTCGCGGCT.....................................................................................	23	1	1.00	0.00	0.00	1.00
..................................................GCCGGATCCGGATGTCTCGG.......................................................................................	20	1	1.00	0.00	0.00	1.00
..................................................GCCGGATCCGGATGTCGCGGA......................................................................................	21	1	1.00	1.00	0.00	0.00
..................................................GCCGGATCCGGATGGCGC.........................................................................................	18	1	1.00	0.00	0.00	1.00
..................................................GCCGGATCCGGATGTCGCGGCGT....................................................................................	23	1	1.00	0.00	0.00	1.00
.........................................................................................ACGCCGCCATTCGAATCGGGTAG.............................................	23	1	1.00	1.00	0.00	0.00
......................................................................CGACGATGAGGACGATGG.....................................................................	18	1	1.00	0.00	1.00	0.00
.................................................AGCCGGATCCGGATGCCTCGG.......................................................................................	21	1	1.00	0.00	0.00	1.00
.................................................AGCCGGATCCGGATGTTGCGGCG.....................................................................................	23	1	1.00	0.00	0.00	1.00
.................................................AACCGGATCCGGATGTCGCGG.......................................................................................	21	1	1.00	0.00	0.00	1.00
..................................................GCCGGATCCGGATGTCTCGT.......................................................................................	20	1	1.00	0.00	0.00	1.00

droYak2

CGCCGGCGAGTGGTTATCCGGGTGCGCTGGACGATCTGATCTTCTCGGGAGCCGGATCCGGATGTCGCGGCGACGACGAGGACGAGTGCACGCCGCCATTCGAATCGGGAAGCGGAGATGATCTCATAACACCGGTCTACGTGCCGCCCACCAAGCA	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
...............................................................GTTGCGGCGACTACGAGGA...........................................................................	19	1	32.00	0.00	0.00	30.00	2.00	0.00
.................................................AGCCGGATCCGGATGTCGCGGC......................................................................................	22	1	23.00	0.00	2.00	0.00	5.00	16.00
.................................................AGCCGGATCCGGATGTCGCGGCG.....................................................................................	23	1	18.00	0.00	1.00	1.00	10.00	6.00
.................................................AGCCGGATCCGGATGTCGCGG.......................................................................................	21	1	11.00	0.00	2.00	1.00	6.00	2.00
..................................................GCCGGATCCGGATGTCGCGGC......................................................................................	21	1	10.00	0.00	5.00	0.00	4.00	1.00
.................................................AGCCGGATCCGGATGTCGCGGCGA....................................................................................	24	1	10.00	0.00	5.00	0.00	5.00	0.00
.................................................AGCCGGATCCGGATGTCGCG........................................................................................	20	1	9.00	0.00	3.00	0.00	1.00	5.00
..................................................GCCGGATCCGGATGTCGCGGCGA....................................................................................	23	1	8.00	0.00	4.00	1.00	3.00	0.00
...........................................................................................GCCGCCATTCGAATCGGGAAGC............................................	22	1	7.00	0.00	2.00	0.00	5.00	0.00
..................................................GCCGGATCCGGATGTCGC.........................................................................................	18	1	7.00	0.00	1.00	0.00	1.00	5.00
..................................................GCCGGATCCGGATGTCGCGT.......................................................................................	20	1	6.00	0.00	1.00	1.00	0.00	4.00
..................................................GCCGGATCCGGATGTCGCG........................................................................................	19	1	6.00	0.00	2.00	0.00	2.00	2.00
..................................................GCCGGATCCGGATGTCGCGGCG.....................................................................................	22	1	4.00	0.00	1.00	0.00	3.00	0.00
..................................................GCCGGATCCGGATGTCGT.........................................................................................	18	1	3.00	0.00	0.00	0.00	1.00	2.00
..................................................GCCGGATCCGGATGTCGCGG.......................................................................................	20	1	3.00	0.00	0.00	0.00	0.00	3.00
.................................................AGCCGGATCCGGATGTCG..........................................................................................	18	1	2.00	0.00	1.00	0.00	0.00	1.00
.................................................AGCCGGATCCGGCTGTCGCGGCGA....................................................................................	24	1	2.00	0.00	1.00	0.00	1.00	0.00
...........................................CTCGGGAGCCGGAACAGGA...............................................................................................	19	1	1.00	0.00	0.00	0.00	1.00	0.00
.................................................AGCCGGATCCGGATGTCTCGGCG.....................................................................................	23	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................GCCGGATCCGGATGTCGTGGGG.....................................................................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
...............................................................GTTGCGGCGACTACGAGG............................................................................	18	1	1.00	0.00	0.00	1.00	0.00	0.00
.................................................AGCCGGATCCGGCGGTCGCGG.......................................................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................GCCTGATCCGGATGTCGC.........................................................................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
..................................................GCCGGATCCGGATGTCGCGGCGG....................................................................................	23	1	1.00	0.00	0.00	0.00	1.00	0.00
.................................................AGCCGGCTCCGGATGTCGCGGCGC....................................................................................	24	1	1.00	0.00	0.00	0.00	1.00	0.00
...........................................................................................GCCGCCATTCGCATCGGGAAGC............................................	22	1	1.00	0.00	0.00	0.00	1.00	0.00
............................................................................................................GAAGCGGAGATGATGGCAT..............................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
..................................................GCCGGATCCGGATGCCGCGG.......................................................................................	20	1	1.00	0.00	0.00	0.00	1.00	0.00
...........................................................................................GCCGCCATTCGAATCGGGAAG.............................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
.................CAGGGTGCGGTGGACG............................................................................................................................	16	1	1.00	0.00	0.00	0.00	1.00	0.00
..........................................................................................CGCCGCCATTCGAATCGGGAAG.............................................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
..................................................GCCGGATCCGGATGTAGT.........................................................................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
...........................................................................................GCCGCCATTCGAATCGGGCAG.............................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.................................................AGCCGGATCCGGATGCCGCCG.......................................................................................	21	1	1.00	0.00	0.00	0.00	1.00	0.00
.................................................AGCCGGATCCGGATGTCGCGGCCA....................................................................................	24	1	1.00	0.00	0.00	0.00	1.00	0.00
.................................................AGCCGGATCCGGATGTCGCGGCGG....................................................................................	24	1	1.00	0.00	1.00	0.00	0.00	0.00
.......................GCGCTGGAGGATCTGATT....................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
.........................................................................CGACGAGGACGAGTGCAC..................................................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
..................................................ACCGGATCCGGATGTCGCG........................................................................................	19	1	1.00	0.00	1.00	0.00	0.00	0.00
..................................................GCCGGATCCGGATGTCGCGGCGC....................................................................................	23	1	1.00	0.00	0.00	0.00	1.00	0.00
......................................................................CGACGACGAGGACGATGG.....................................................................	18	1	1.00	1.00	0.00	0.00	0.00	0.00
....................................................................GGCAACGACGTGGACGAGTGC....................................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00

droEre2

CGCCGGCGAGTGGTTATCCGGGTGCGCTGGACGATCTGATCTTCTCGGGAGCCGGATCCGGATGTCGCGGCGACGACGAGGACGAGTGCACGCCGCCATTCGAATCGGGAAGCGGGGATGATCTCATAACACCGGTCTACGTGCCGCCCACCAAGCA	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
..................................................GCCGGATCCGGATGTCGCGG.......................................................................................	20	1	99.00	0.00	0.00	0.00	99.00
..................................................GCCGGATCCGGATGTCGCGGCG.....................................................................................	22	1	16.00	0.00	4.00	0.00	12.00
..................................................GCCGGATCCGGATGTCGC.........................................................................................	18	1	15.00	0.00	0.00	0.00	15.00
..................................................GCCGGATCCGGATGTCGCG........................................................................................	19	1	11.00	0.00	1.00	0.00	10.00
..................................................GCCGGATCCGGATGTCGCGT.......................................................................................	20	1	10.00	0.00	1.00	0.00	9.00
..................................................GCCGGATCCGGATGTCGCGGC......................................................................................	21	1	8.00	0.00	1.00	0.00	7.00
..................................................GCCGGATCCGGATGTCGCGGCGA....................................................................................	23	1	7.00	0.00	1.00	0.00	6.00
..................................................GCCGTATCCGGATGTCGCGG.......................................................................................	20	1	2.00	0.00	0.00	0.00	2.00
..................................................GCCGGATCCGGATGTCGCGGCGT....................................................................................	23	1	2.00	0.00	1.00	0.00	1.00
..................................................GCCGGATCCGGATGTCGCGTT......................................................................................	21	1	2.00	0.00	0.00	0.00	2.00
..................................................GCCGGATCCGGATGTCGCGGT......................................................................................	21	1	2.00	0.00	0.00	0.00	2.00
..................................................GCCGGATCCGGATGTCGCGGTT.....................................................................................	22	1	2.00	0.00	0.00	0.00	2.00
..................................................GCCGGATCCGGATGTCGCGGCGC....................................................................................	23	1	2.00	0.00	1.00	0.00	1.00
..................................................GCCGGATCCGGATGTCGCT........................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
.................................................................................................ATTCGAATGGGGAAGTGGG.........................................	19	1	1.00	1.00	0.00	0.00	0.00
..................................................GCCGGATCCGAATGTCGCGGCG.....................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
..................................................GCCGGATCCGGATGTCGG.........................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
..................................................GCCGGATCCTGATGTCGCGT.......................................................................................	20	1	1.00	0.00	0.00	0.00	1.00
..................................................GCCGGATCCGGATGTCGCGGCGG....................................................................................	23	1	1.00	0.00	1.00	0.00	0.00
..................................................GCCGGATCCGGATGTCGCGTC......................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
......................................................................CGACGAGGAGGACGAGGGC....................................................................	19	1	1.00	1.00	0.00	0.00	0.00
..................................................GCCGGATCCGGATGTCGACGCGA....................................................................................	23	1	1.00	0.00	0.00	0.00	1.00
..................................................GCCTGCTCCGGATGTCGC.........................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
..................................................GCCGGATCCGGATGTCGCGGCTC....................................................................................	23	1	1.00	0.00	0.00	0.00	1.00
..................................................GCAGGATCCGGATGTCGCGG.......................................................................................	20	1	1.00	0.00	0.00	0.00	1.00
..................................................GCCGGATCCTGATGTCGCG........................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
..................................................GCCGGATCCGGATGTCGT.........................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
..................................................GCCGGATCCGGATGTCGCGCC......................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
.........................................................................CGACGACGACGAGTGCCC..................................................................	18	1	1.00	0.00	0.00	0.00	1.00
..................................................GCCGGATCCGGATGTCGCGGGGA....................................................................................	23	1	1.00	0.00	1.00	0.00	0.00
..................................................GCCGGATCCTGATGTCGCGG.......................................................................................	20	1	1.00	0.00	0.00	0.00	1.00
..................................................GCCGGATCCGGTTGTCGCGG.......................................................................................	20	1	1.00	0.00	0.00	0.00	1.00
.................................................AGCCGGATACGGATGTCGCGG.......................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
..................................................GCCGGATCCGGATGTCGAGGCG.....................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
..................................................GCAGGATCCGGATGTCGCGGCGA....................................................................................	23	1	1.00	0.00	0.00	0.00	1.00
..................................................GCCGGATCCGGATGTCCCGG.......................................................................................	20	1	1.00	0.00	0.00	0.00	1.00
..................................................GCCGGATCCGGATGTCGAGG.......................................................................................	20	1	1.00	0.00	0.00	0.00	1.00
...................................................................CGGCGACGATGAGGAGGA........................................................................	18	1	1.00	0.00	0.00	0.00	1.00
..................................................GCCGGATACGGATGTCGCGG.......................................................................................	20	1	1.00	0.00	0.00	0.00	1.00
.................................................AGCCGGATCCGGATGTCGCGG.......................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
..................................................GCTGGATCCGGATGTCGCGG.......................................................................................	20	1	1.00	0.00	0.00	0.00	1.00
..................................................GCCGGATCCGGATGTCCAGG.......................................................................................	20	1	1.00	0.00	0.00	0.00	1.00
..................................................ACCGGATCCGGATGTCGCGG.......................................................................................	20	1	1.00	0.00	0.00	0.00	1.00
.............ATAxCAGGGTGCGCTGGAC.............................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
..................................................TCCGTATCCGGATGTCGCGG.......................................................................................	20	1	1.00	0.00	0.00	0.00	1.00

droEug1

CGCCGGCGAGTGGTTATCCGGGTGCGCTGGACGATTTGATCTTCTCGGGAGCCGGATCCGGATGTCGTGGCGATGACGAGGACGAATGTACGCCGCCATTCGAATCGGGAAGCGGGGATGATCTAATAACGCCTGTATATGTGCCGCCCACCAAGCA

Size

Hit Count

Total Norm

droBia1

CGCCGGCGAGTGGTTATCCGGGTGCGCTGGACGATCTGATCTTCTCGGGAGCCGGATCCGGATGTCGCGGCGACGACGAGGACGAGTGCACGCCGCCATTCGAATCGGGTAGCGGGGACGATCTGATCACACCGGTGTATGTGCCGCCCACCAAGCA

Size

Hit Count

Total Norm

droTak1

CGCCGGCGAGTGGTTATCCGGGTGCGCTGGACGATCTGATCTTCTCGGGAGCCGGATCCGGATGTCGCGGCGACGACGAGGACGAGTGCACGCCGCCATTCGAATCGGGAAGCGGGGATGATCTGATCACGCCGGTTTATGTGCCGCCCACCAAGCA

Size

Hit Count

Total Norm

droEle1

CGCCGGCGAGTGGTTATCCGGGTGCGCTGGACGATCTGATCTTCTCGGGAGCCGGATCCGGATGTCGTGGCGATGACGAGGACGAGTGCACGCCACCGTTTGAGTCCGGAAGCGGAGATGATCTGATAACGCCGGTATATGTGCCGCCCACCAAGCA

Size

Hit Count

Total Norm

droRho1

CGCCGGCAAGTGGTTATCCGGGTGCGCTGGACGATCTGATCTTCTCGGGAGCCGGATCCGGATGTCGCGGCGATGACGAGGACGAGTGCACGCCGCCATTTGAGTCCGGGAGCGGGGATGATCTGATCACGCCGGTGTATGTGCCGCCCACCAAGCA

Size

Hit Count

Total Norm

droFic1

CGCCGGCAAGTGGTTATCCTGGTGCGCTGGACGACCTGATCTTCTCGGGAGCCGGATCCGGATGCCGCGGCGATGACGAGGACGAGTGCACGCCGCCGTTCGAATCGGGAAGCGGGGACGATCTGATCACGCCGGTCTACGTGCCGCCCACCAAGCA

Size

Hit Count

Total Norm

droKik1

CGCCGGCGAGTGGTTTCCCCGGTGCCTTAGACGATCTGATATTCTCTGGAGCCGGGTCAGGGTGTCGCGGCGACGACGAGGACGAGTGCACGCCGCCCTTCGAGTCGGGCAGCGGCGATGACCTAATCACGCCCGTCTATGTGCCGCCCACCAAGCA

Size

Hit Count

Total Norm

droAna3

CTCCGGCGAGTGGCTATCCGGGTGCCCTGGACGATCTGATCTTCTCGGGAGCGGGATCCGGGTGCCGGGGCGATGACGAGGACGAGTGCACGCCACCCTTCGAGTCGGGCAGCGGGGACGACCTGATCACTCCGGTGTATGTACCGCCCACCAAGCA	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
..................................................GCGGGATCxxGGTGCCGGGG.......................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
...........................................................................................................GGCAGCAGGGACGACCTT................................	18	1	1.00	0.00	0.00	1.00	0.00
........................................................................................................................................................AAACA	19	2	0.50	0.00	0.00	0.00	0.50
.......................................................................GATGCCGAGGAGGAGTGC....................................................................	18	1	1.00	1.00	0.00	0.00	0.00
....................................................................GACGATGACGACGACGAG.......................................................................	18	44	0.02	0.00	0.00	0.00	0.02
........................................................................ATGACGAGGGCGAGGGCA...................................................................	18	1	1.00	0.00	1.00	0.00	0.00
....................................................................CGCGATGCCGAGGACGAG.......................................................................	18	1	1.00	0.00	0.00	0.00	1.00
..............................................GAGAGxGGGATCCGGGTGC............................................................................................	18	1	1.00	0.00	0.00	1.00	0.00

droBip1

CTCCGGCGAGTGGCTATCCGGGTGCCCTAGATGATCTGATCTTCTCGGGAGCGGGATCCGGGTGCCGTGGCGACGACGAGGACGAGTGCACGCCGCCCTTCGAGTCGGGCAGTGGAGACGATCTGATCACTCCGGTGTATGTACCGCCCACGAAGCA

Size

Hit Count

Total Norm

dp4

CGCCGGCCAGCGGCTATCCCGGCACCATTGACGATCTGATCTTCTCCGGGGCCGGGTCCGGGTGCCGCGGCGACGACGAGGACGAGTGCACACCGCCCTTCGAGTCGGGCAGCGGCGATGACCTCATCACGCCCGTGTATGTGCCACCCACCAAGCA	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
....................................................................GGCGATGACGAGGTCGAG.......................................................................	18	1	1.00	0.00	1.00	0.00	0.00
............................................TCCAGGGCCGGGACCGGG...............................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
.......................................................................GACGACGAGGACGACTGGAC..................................................................	20	1	1.00	0.00	0.00	0.00	1.00
....................................................................GGCAACGACGAGGCCGAGT......................................................................	19	1	1.00	1.00	0.00	0.00	0.00

droPer1

CGCCGGCCAGCGGCTATCCCGGCACCATTGACGATCTGATCTTCTCCGGGGCCGGGTCCGGGTGCCGCGGCGACGACGAGGACGAGTGCACACCGCCCTTCGAGTCGGGCAGCGGCGATGACCTCATCACGCCCGTGTATGTGCCACCCACCAAGCA	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
....................................................................GACGACGACGAGGATGAGT......................................................................	19	1	2.00	2.00	0.00	0.00	0.00	0.00
.......................................................................GACGACGAGGACGAGAAC....................................................................	18	2	1.00	0.00	0.00	0.00	0.00	1.00
...................................................................CGACGACGATGAGGACGA........................................................................	18	13	0.15	0.00	0.00	0.00	0.00	0.15
..........................................TCTCCAGGGCCGGGACCGGG...............................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
.............CTATCCAGGCACCACTGA..............................................................................................................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
....................................................................GACGAGGACGAGGACGAG.......................................................................	18	5	0.20	0.00	0.00	0.00	0.00	0.20
......................................................................CGACGACGAGGACGAxTGCACCC................................................................	22	1	1.00	0.00	0.00	0.00	0.00	1.00
.....................GCACCATTGAGGATCTGATCC...................................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
..CCGGCCAGTGGGTATCCC.........................................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
........................................................................ACGACGAGGACAACTGCA...................................................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
.................................................................................................................GGCGTTGACCTCATCAAGC.........................	19	1	1.00	0.00	0.00	0.00	0.00	1.00
...................................................................CAGCGAGGACGAGGACGA........................................................................	18	3	0.33	0.00	0.00	0.00	0.00	0.33
......................................................................................TGCACACCGCCCTTCGAGTCGGGCAG.............................................	26	1	1.00	0.00	0.00	0.00	0.00	1.00
........................................................................ACGACGAGGACGAxTGCACCC................................................................	20	1	1.00	0.00	0.00	0.00	0.00	1.00

droWil1

CGCCGGCCAGTGGCTATCCTGGGGCCATAGATGATCTTATATTCTCCGGTGCCGGATCCGGTTGTCGCGGCGACGATGAAGACGAATGTACGCCGCCCTTCGAGTCGGGCAGTGGAGATGATCTAATCACACCTGTCTATGTGCCTCCGACAAAACA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
..................................................................GCGGGGACGATGATGACG.........................................................................	18	2	1.50	1.50	0.00	0.00	0.00
....................................................................GGTGACGATGAAGTCGAA.......................................................................	18	1	1.00	0.00	1.00	0.00	0.00
..................................................GCCGGATCCGGATGTCGCGT.......................................................................................	20	1	1.00	0.00	0.00	1.00	0.00
..........................................................................GATGAAGACGAATGTACGCC...............................................................	20	1	1.00	0.00	0.00	0.00	1.00

droVir3

CGCCTGCGAGCGGCTATCCGGGCGCCATAGACGATCTGATCTTCTCCGGGGCCGGGTCCGGTTGTCGCGGCGACGACGAGGACGAATGCACGCCCCCCTTCGAGTCGGGCAGCGGGGATGACCTAATAACGCCCGTCTATGTGCCGCCCACCAAGCA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.............CAATCTGGGCGCCATAGA..............................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00	0.00
.............................................................................GAGGACGATTGCACGCCT..............................................................	18	1	1.00	0.00	0.00	0.00	1.00	0.00
....................................................................TACGACGACGAGGACGAA.......................................................................	18	2	0.50	0.00	0.00	0.50	0.00	0.00

droMoj3

CGCCGGCTAGTGGCTATCCGGGCGCCATAGACGACCTGATCTTCTCCGGAGCCGGATCTGGGTGTCGCGGCGACGACGAGGATGAATGCACGCCGCCCTTCGAGTCGGGCAGTGGGGATGACCTGATCACACCCGTCTATGTGCCGCCCACCAAACA	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
......................................................................CGACGACGACGATGAAGGC....................................................................	19	3	0.33	0.33	0.00	0.00	0.00
..........................................................................................................GGGCAGTGTGGxTGACCTG................................	18	1	1.00	0.00	0.00	1.00	0.00
..........................................................................................................GGGCAGGGGGGATGACCG.................................	18	1	1.00	0.00	1.00	0.00	0.00
..................................................GCCGGATCCGGATGTCGCGG.......................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................................GGGCAGTGGGGATAACCG.................................	18	1	1.00	0.00	0.00	1.00	0.00
..........................................................................................................GGGCAGTGGGGxTTACCTG................................	18	1	1.00	0.00	0.00	1.00	0.00
..................................CCTGATCTTCTCCGGAGCCGGAT....................................................................................................	23	1	1.00	0.00	1.00	0.00	0.00

droGri2

CGCCGGCGAGTGGTTATCCGGGTGCGATAGACGATCTGATCTTCTCCGGTGCGGGATCCGGGTGTCGCGGCGACGATGAGGACGAATGCACGCCGCCCTTCGAGTCGGGCAGCGGGGATGATCTAATTACGCCCGTCTATGTGCCACCCACCAAACA	Size	Hit Count	Total Norm	V109 Male body
...................................................................................................TCGAGTCGGTCTGCGGGG........................................	18	1	1.00	1.00
....................................................................................................CGAGTCGGTCTGCGGGGA.......................................	18	1	1.00	1.00

Generated: 04/20/2012 at 05:17:46 EDT

dme-mir-4952

chr3R:18306534-18306660 +

Known_mirbase

CDS

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Legend

Re-alignment after removal of non-confident orthologs

20-way Secondary Structure

Small RNA-seq read pileup