dme-mir-4951- 12- and 20-way alignments

dme-mir-4951	chr3R:17142437-17142587 +	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 17142468-17142488
   star strand at position 17142541-17142563
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chr3R:17142422-17142602 +	TTTGAA-AATCCCTTCCTTTTCGTACGT----ACAA-AAAAGCATCAGGT-TTTCGGGTGAGGTTT--CTGATGCT---TTGTCTCTTAAGTTTTTCCT-----A--ACAATT-----------------------A----A--AC-CCT-------------ATGTCGGTATTA-CGAATACCA-----T--CAAAAAACCTCACCCACCAAATGTATGACCAGAGAGATAAAAA-TT-TCAATAAACAACG
droSim1	chr3R:4327111-4327287 -	TTTCAAAAATCCCTTCCTTTTCGTACGT----ACAA-AAAAGCATCAGGT-TTTCGGGTGAGGTTT--CTGATGCT---TTGTCTCTTAAGTTTTCCCT-----A--AAAATA-----------------------A----G--AC-CCT-------------ATGTCGGTATTT-CGAATACCA-----T--CAAAAAACCTCACCCACCAAATGTATGACCAGAGAGATAAAAA-TT-TCAATAAA-----
droSec1	super_6:4348795-4348971 -	TTTCAAAAATCCCTTCCTTTTCGTACGT----ACAA-AAAAGCATCAGGT-TTTCGGGTGAGGTTT--CTGATGCT---TTGTCTCTTAAGTTTTCCCT-----A--ACAATT-----------------------A----G--AC-CCT-------------ATGTCGGTATTT-CGAATACCA-----T--CAAAAAACCTCACCCACCAAATGTATGACCAGAGAGATAAAAA-TT-TCAATAAA-----
droYak2	Unknown	TTAAAA-AA----------TACGTGCGT----ACAAAAAAAGCATCAGGT-TTTCGGGTGAGGTTT--CTGATGCT---TTGTCTCTTAAGTTTTTCCT-----A--ACAACT-----------------------A----G--TC-CCT-------------ATGTTGGTACTA-CGAATACCAA----AT-CAAAAAACCTCACCCACCAAAAGTATGAACAGAGAGATAAAAA-TT-TCAATATA-----
droEre2	scaffold_4770:4529506-4529671 -	CT---------AT----TGTACGTAAGC----ATTA-TTAAGCATCAGGT-TTTCGGGTGAGGTTT--CTGATGCT---TCGTCTCTTAAGTTTTCCAT-----A--ACAATT-----------------------G----G--TC-CCT-------------ATGTTGGTATTA-CAAATACCAT----AC-CAAAAAACCTCACCCACCAAATGTATGAACAGAGAGATAAAAA-TT-TCAATAAA-----
droAna3	scaffold_13340:3794779-3794949 +	T---------CTCTACATTAATATTATC----ATGG-AAAAGCATCAGTTTTTTCGGGTGAGGTTATACTGATGCT---TAGTCATTTCAATTGCCCAA-----A--ATAATT-----------------------G----A--AT-TTT--------------AATTGGTATTTTTCAATACCC-----A--AGACTAACCTCACCCACCAAATATATGAACAAAGAGATATAAA-TT-TCAATAAA-----
dp4	chr2:5640393-5640558 +	C---------CCCGTCAATATTGTAATT----AAAATAAAAGCATCCGAG-CTTCGGGTGAGGTTA--TGGATGCATTTTGATCTCTGCACTTATCTCC-----A--A--------------------------------------------------AACCCCCTTTTGTATGGAAACATACCA-----CC-CAAATAACCTCACCCACCAAAT-TATGAACAAAGAGAAAAAAA-TT-TCAATAAA-----
droPer1	super_19:1368762-1368927 +	C---------CCCGTCAATATTGTAATT----AAAATAAAAGCATCCGAG-CTTCGGGTGAGGTTA--TGGATGCATTTTGATCTCTGCACTTATCTCC-----A--A--------------------------------------------------AACCCCTTTTTGTATGGAAACATACCA-----CC-CAAATAACCTCACCCACCAAAT-TATGAACAAAGAGAAAAAAA-TT-TCAATAAA-----
droWil1	scaffold_181130:16135001-16135163 +	T---------CT------TACTGTTAT------CCA-AAAATCATCACGG-TTTCGGGTGAGGTTA--GTGATGACTTTTCCTTTT----------TCA-----A--ACAACT------A----------------A----A--AT-TTTAATTCCAAAAACCCTTTCGGTATAG-ACAATACCA-----A--AAAAAAACCTCACCCACCAAATATATGAACAAAGAGAAACAAA-TTTTCA----------
droVir3	scaffold_12822:1191963-1192162 -	TT---------CT-----TGTCGTACG-ACTTAT-G-AGAAGCATCTAG--TTTCGGGTGAGGTTTT-ATGATGCAATTCTCGCTCTA--------TCCCATCTTGAAC-ATACGTTCCAAAATAAATACATAATAA-AAAAATCC-CCT-------------GCTTTGGTATTT-AAGCTACCAA----CCAAAAAAAACCTCACCCACCAAATGTATGAACAAAGAGATAAAAAATTTTCAATACACCATG
droMoj3	Unknown	TA---------CT-----TGTTGTACA-GCTTGT-G-AGATGCATCAGAT-TTTCGGGTGAGGTTTT-ATGATGCAGTACT--CCATG--------TCCCACTCCGAAT-ACT------AAAAT-----------AAAAAGAATCCTTCT-----------CCCATTTGGTATTA-AAGCCACCCA----CC-AAAAAAACCTCACCCACCAAACATATGAACAAAGAGATACAAAATATTCAATACAACAAC
droGri2	scaffold_15074:2653283-2653444 +	G-------------------TCGTACG-ACT-AATG-AAATGCATCTAGT-TTTCGGGTGAGGTTT--TAGATGCGT---------------TTCCCCC-----A--GAAAAT----------------------AA----A--AC-ACT-----------CCTTTTTGGTATTT-AAACTACAAAAAAAAA-AAAAAAACCTCACCCACCAAATATATGAACAAAGAGATAAAAT-AT-TCAATAAACCAAC

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chr3R:17142422-17142602 +	NA	TTTG--AAA-A--TCC--------------CTTCCTTTTCGTACGTAC----AA-AAAAGCATCAGGT-TTTCGGGTGAGGTT-TCTGATGCTT--TGT---CTCTTAAGT-T------TTTCCTAA-CAATTAAA----------------------------------------CCCT------ATGTCGGTATTACG-AATACCA------T---CAAAAAACCTCACCCACCAAATGTATGACCAGAGAGATAAAAA-T-TTCAATAAA-CAAC------G-
droSim1	chr3R:4327111-4327287 -	1	TTTC--AAAAA--TCC--------------CTTCCTTTTCGTACGTAC----AA-AAAAGCATCAGGT-TTTCGGGTGAGGTT-TCTGATGCTT--TGT---CTCTTAAGT-T------TTCCCTAA-AAATAAGA----------------------------------------CCCT------ATGTCGGTATTTCG-AATACCA------T---CAAAAAACCTCACCCACCAAATGTATGACCAGAGAGATAAAAA-T-TTCAATAAA-------------
droSec1	super_6:4348795-4348971 -	2	TTTC--AAAAA--TCC--------------CTTCCTTTTCGTACGTAC----AA-AAAAGCATCAGGT-TTTCGGGTGAGGTT-TCTGATGCTT--TGT---CTCTTAAGT-T------TTCCCTAA-CAATTAGA----------------------------------------CCCT------ATGTCGGTATTTCG-AATACCA------T---CAAAAAACCTCACCCACCAAATGTATGACCAGAGAGATAAAAA-T-TTCAATAAA-------------
droYak2	chr3R:5943432-5943618 +	2	TTAA--AAA--AATTCA------------T-TTACTTTACGTGCGTAC----AAAAAAAGCATCAGGT-TTTCGGGTGAGGTT-TCTGATGCTT--TGT---CTCTTAAGT-T------TTTCCTAA-CAACTAGT----------------------------------------CCCT------ATGTTGGTACTACG-AATACCA------AAT-CAAAAAACCTCACCCACCAAAAGTATGAACAGAGAGATAAAAA-T-TTCAATATAAAAAC------A-
droEre2	scaffold_4770:4529493-4529670 -	2	TA------------------------------------TTGTACGTAAGCATTA-TTAAGCATCAGGT-TTTCGGGTGAGGTT-TCTGATGCTT--CGT---CTCTTAAGT-T------TTCCATAA-CAATTGGT----------------------------------------CCCT------ATGTTGGTATTACA-AATACCA------TAC-CAAAAAACCTCACCCACCAAATGTATGAACAGAGAGATAAAAA-T-TTCAATAAAAAAATGTTGTCGA
droEug1	scf7180000409760:1269937-1270134 -	1	TCCT--AAAAAGCTTCAAACCCCTTTTCTA-ATCCCTTTCGTACGAA-----A-AAAAGGCATCAGGT-TTTCGGGTGAGGTT-TCTGATGCTT--TGT---CTTTTA-GTTT----CG-CGCCTTT-TTATAAAC----------------------------------------CCCT------TTGTCGGTATTGCA-AATACCA------T---CAAAAAACCTCACCCACCAAATATATGAACAAAGAGATACAAA-T-TTCAATCAATTAAC------T-
droBia1	scf7180000302155:521238-521435 +	1	CTTA--AGA--ACTTCACACCC--TTTCAC-GTCCTTTTCGTACGAAT----AAATAAAGCGTCAGGT-TTTCGGGTGAGGTT-TCTGATGCTT--TGT---CTCTTACCT-TTTTACA-TCCCTTT-ACATGAAT---------------------------------------CCCCC------ATCTTGGTATTGCA-AATACCA----------CAAAAAACCTCACCCACCAAATATATGAACAAAGAGAA-AAAA-T-TTCAATAAG-TACT------G-
droTak1	scf7180000415417:230044-230222 -	2	ACTA--AAA--ACTTCAAACCC--TTTCAC-AT-ATTTTCGTACGAAC----A--AAAAGCATCAGGT-TTTCGGGTGAGGTT-TCTGATGCTT--TGT---CCCTTA---------------------CATGAAT----------------------------------------TCCT------ATATCGGTATTGAA-AATGCCA------C---CTAAAAACCTCACCCACCAAATGTATATTCAAAGAGAATAAAA-T-TTCAATAAACTAAC------G-
droEle1	scf7180000491104:1675814-1676010 +	1	TATT--AAA--ACTTCACTCCC-CTTTCAC-ATTCTTATCGTTCGAAC----GAATTCAGCATCAGGT-TTTCGGGTGAGGTT-TCTGATGCTA--TGT---CTTTGTACC-T------TCTCCAAA-AAATGAAT----------------------------------------CCCT------ACCTTGGTATTGCA-AATACCC------TA--TAAAAAACCTCACCCACCAAATGTATGAACAAAGAGATATAAA-T-TTCAATAAACTAAC------A-
droRho1	scf7180000767410:75272-75464 -	1	CATA--AAA---CTTCTGGCCC-CATTTAC-TT-CTTATCGTACGACC----GAAAACAGCATCAGGT-TTTCGGGTGAGGTT-TCTGATGCTT--TGT---CCTTTTACA-T------TCTCCAAT-AAAA-TAT----------------------------------------CCCT------ATTTCGGTATTTCA-AATACTT------T---AAAAAAACCTCACCCACCAAATGTATGAACAAAGAGATAAAAA-T-TTCAATAAAGTAAA------A-
droFic1	scf7180000454096:426559-426742 +	1	CTTC--A----------GACCC-TTTTCAT-TTCCCTATCGTACGAA-------AAAAAGCATCAGGT-TTTCGGGTGAGGTT-TCTGATGCTT--TGT---CTCTCGACT-T------TACCCCTT-ATACTATC----------------------------------------CCCT------GT-TTGGCATTCCA-AATGCCA------C---CTAAAAACCTCACCCACCAAATGTATGAACAAAGAGAAAAACA-T-TTCAATAAGGTATT------G-
droKik1	scf7180000302461:267813-268013 +	1	TCTA--AAA--GCTTCAAACCC-TTTTCCA-AT-ACCATCGTACGAAC----ATTAAAAGCATCAGAT-TTTCGGGTGAGGTT-ACTGATGCTCTTTGT---CTCTAAAAT-A--------------------TGTTTTTTTTTTCTAAAAAAAAAATAAA-----------------------------AGGAA-AACA-TACACCA------CCTTAAAATAACCTCACCCACCAAATGTATGAACAAAGAGAACAAAA-T-TTCAATACA--AAC------C-
droAna3	Unknown	NA	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000396395:545263-545439 -	1	TTTCTTATA-A--TTA--------------CAATAATTTTATA---AT----A-GATAAGCATCAGTTTTTTCGGGTGAGGTCAACTGTTGCGA--AAT---CATTTCAAT-T------GCCCAAAAACAATTGAA----------------------------------------TTT-------TAATTGGTATTTTTCAATGCCC------A---AAACTAACCTCACCCACCAAATATATGAAAAAAGAGATACAAA-T-TTCAATAA--------------
dp4	Unknown	NA	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer1	super_19:1368761-1368939 +	1	CCC---------------------------CGTCAATATTGTAATTAA----AATAAAAGCATCCGAG-CTTCGGGTGAGGTT-ATGGATGCATTTTGA--TCTCTGCACT-T------ATCTCCAA-------AA----------------------------------------CCC-------CTTTTTGTATGGAAACATACCA------CC--CAAATAACCTCACCCACCAAAT-TATGAACAAAGAGAAAAAAA-T-TTCAATAAACACAAAACCACG-
droWil1	scaffold_181130:16134997-16135163 +	1	TAA-------A--T--------------------CTTACTGTTAT--C----C-AAAAATCATCACGG-TTTCGGGTGAGGTT-AGTGATGACT--TTTCCTTTTT---CA-A---ACA-ACTAAAA--TTTTAAT----------------------------------------TCCAAAAACCCTTTCGGTATAGAC-AATACCA------A---AAAAAAACCTCACCCACCAAATATATGAACAAAGAGAAACAAA-TTTTCA------------------
droVir3	scaffold_12822:1191963-1192168 -	1	CTTA--A-----------------------------TGTCGTACGACT--TAT-GAGAAGCATCTAGT--TTCGGGTGAGGTTTTATGATGCAA--TTCTCGCTCT---ATCC----CA-TCTTGAA--CATACGT--------TCCAAAATAAATACATAATAAAAAAAT----CCCCT------GCTTTGGTATTTAA-GCTACCA------ACCAAAAAAAACCTCACCCACCAAATGTATGAACAAAGAGATAAAAAATTTTCAATACACC-AT------G-
droMoj3	scaffold_6540:33813435-33813629 -	1	CCTC--------------------------CTCCCAAGTTGTACAGCT--TGT-GAGATGCATCAGAT-TTTCGGGTGAGGTTTTATGATGCAG--TAC---TCCAT--GTCC----CA-CTCCGAA--TACTA--------------------AAATAAA----AAGAATCCTTCTCC-------CATTTGGTATTAAA-GCCACCC------ACC-AAAAAAACCTCACCCACCAAACATATGAACAAAGAGATACAAAATATTCAATACAACAAC--------
droGri2	scaffold_15074:2653282-2653451 +	5	T------------------------------------GTCGTACGACT--AAT-GAAATGCATCTAGT-TTTCGGGTGAGGTT-TTAGATGCGT--TTC----------------------CCCCAGAAAATAAAA------------------------------CA-------CTCC-------TTTTTGGTATTTAA-ACTACAAAAAAAAA---AAAAAAACCTCACCCACCAAATATATGAACAAAGAGATAAAAT-A-TTCAATAAACCAACAAACCCG-

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

TTTGAA-AATCCCTTCCTTTTCGTACGT----ACAA-AAAAGCATCAGGT-TTTCGGGTGAGGTTT--CTGATGCT---TTGTCTCTTAAGTTTTTCCT-----A--ACAATT-----------------------A----A--AC-CCT-------------ATGTCGGTATTA-CGAATACCA-----T--CAAAAAACCTCACCCACCAAATGTATGACCAGAGAGATAAAAA-TT-TCAATAAACAACG

Size

Hit Count

Total Norm

droSim1

TTTCAAAAATCCCTTCCTTTTCGTACGT----ACAA-AAAAGCATCAGGT-TTTCGGGTGAGGTTT--CTGATGCT---TTGTCTCTTAAGTTTTCCCT-----A--AAAATA-----------------------A----G--AC-CCT-------------ATGTCGGTATTT-CGAATACCA-----T--CAAAAAACCTCACCCACCAAATGTATGACCAGAGAGATAAAAA-TT-TCAATAAA-----	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
.....................................................TCGGGTGAGGTTT--CTGATGCT---..............................................................................................................................................................................	21	1	63.00	0.00	47.00	12.00	4.00
....................................................TTCGGGTGAGGTTT--CTGATGCT---..............................................................................................................................................................................	22	1	50.00	0.00	34.00	11.00	5.00
......................................................................................................................................................................................CCA-----T--CAAAAAACCTCACCCACC..........................................	22	1	19.00	0.00	13.00	2.00	4.00
....................................................TTCGGGTGAGGTTT--CTGATG...................................................................................................................................................................................	20	1	17.00	0.00	14.00	1.00	2.00
.....................................................TCGGGTGAGGTTT--CTGATGCT---T.............................................................................................................................................................................	22	1	13.00	0.00	7.00	4.00	2.00
....................................................TTCGGGTGAGGTTT--CTGATGCC---..............................................................................................................................................................................	22	1	8.00	0.00	7.00	0.00	1.00
.....................................................TCGGGTGAGGTTT--CTGATGCC---..............................................................................................................................................................................	21	1	7.00	0.00	5.00	2.00	0.00
.....................................................TCGGGTGAGGTTT--CTGATGCG---..............................................................................................................................................................................	21	1	4.00	0.00	2.00	0.00	2.00
.....................................................TCGGGTGAGGTTT--CTGATGCT---TTGTC.........................................................................................................................................................................	26	1	4.00	0.00	4.00	0.00	0.00
....................................................TTCGGGTGAGGTTT--CTGATGC..................................................................................................................................................................................	21	1	4.00	0.00	4.00	0.00	0.00
......................................................CGGGTGAGGTTT--CTGATGCT---TTGTCT........................................................................................................................................................................	26	1	3.00	0.00	2.00	1.00	0.00
......................................AAAGCATCAGGT-TTTCGGGT..................................................................................................................................................................................................	20	1	3.00	0.00	2.00	1.00	0.00
......................................................................................................................................................................................CCA-----T--CAAAAAACCTCACCCAC...........................................	21	1	3.00	0.00	2.00	1.00	0.00
....................................................TTCGGGTGAGTTTT--CTGATGCT---..............................................................................................................................................................................	22	1	2.00	0.00	2.00	0.00	0.00
........................................................................................................A--AAAATA-----------------------A----G--AC-CCT-------------ATGTCGGT..................................................................................	22	1	2.00	2.00	0.00	0.00	0.00
.....................................................................................................................................................................................................................ATATATTACCAGAGAGAT......................	18	1	2.00	1.00	0.00	0.00	1.00
......................................................CGGGTGAGGTTT--CTGATGCT---T.............................................................................................................................................................................	21	1	2.00	0.00	2.00	0.00	0.00
................................ACAA-AAAAGCATCAGGT-TTTCGGGT..................................................................................................................................................................................................	25	1	2.00	0.00	2.00	0.00	0.00
....................................................TTCGGGTGAGGTTT--CTGAT....................................................................................................................................................................................	19	1	2.00	0.00	2.00	0.00	0.00
............................................................................................................AAATA-----------------------A----G--AC-CCT-------------ATGTCGGT..................................................................................	20	1	2.00	0.00	0.00	0.00	2.00
.....................................................TCGGGTGAGGTTT--CTGATGC..................................................................................................................................................................................	20	1	2.00	0.00	2.00	0.00	0.00
...................................................TTTCGGGTGAGGTTT--CTGATGCT---..............................................................................................................................................................................	23	1	2.00	0.00	0.00	0.00	2.00
...............................................GGT-TTTCGGGTGAGGTTT--CTGATGC..................................................................................................................................................................................	25	1	2.00	0.00	1.00	0.00	1.00
.....................................................TCGGGGGAGGTTT--CTGATGCT---..............................................................................................................................................................................	21	1	2.00	0.00	1.00	1.00	0.00
.....................................................TCGGGTGAGGTTT--CTGATGCT---TTGT..........................................................................................................................................................................	25	1	1.00	0.00	1.00	0.00	0.00
......................................................CGGGTGAGGTTT--CTGATGCT---..............................................................................................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
.......................................AAGCATCAGGT-TTTCGGGG..................................................................................................................................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
....................................................TTCGGGAGAGGTTT--CTGATGCT---..............................................................................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.............................................................................................TTCCCT-----A--AAAATA-----------------------A----G--AC-CCT-------------ATGTCGGT..................................................................................	28	1	1.00	0.00	0.00	0.00	1.00
....................................................TTCGGGGGAGGTTT--CTGATT...................................................................................................................................................................................	20	1	1.00	0.00	0.00	1.00	0.00
....................................................TTCGGGTGAGGTTT--CTGATGCT---TTGTC.........................................................................................................................................................................	27	1	1.00	0.00	1.00	0.00	0.00
...........................................ATCAGGT-TTTCGGGTGAGGTTT--CTGA.....................................................................................................................................................................................	26	1	1.00	0.00	0.00	0.00	1.00
....................................................TTCGGGGGAGGTTT--CTGATGCT---..............................................................................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.................................................T-TTTCGGGTGAGGTTT--CTGATGCC---..............................................................................................................................................................................	24	1	1.00	0.00	1.00	0.00	0.00
....................................................TTCGGGTAAGGTTT--CTGATGCT---..............................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
............CTTCCTTTTCGTACGT----ACAA-AAAAG...................................................................................................................................................................................................................	25	1	1.00	0.00	0.00	0.00	1.00
.....................................................TCGGGTGAGGTTT--CTGATGG..................................................................................................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
...................................A-AAAAGCATCAGGT-TTTCGGGTGA................................................................................................................................................................................................	24	1	1.00	0.00	0.00	0.00	1.00
.................................................................................................................................................C-CCT-------------ATGTCGGTATTT-CGAAT........................................................................	21	1	1.00	0.00	0.00	0.00	1.00
................................................GT-TTTCGGGTGAGGTTT--CTGATGCT---..............................................................................................................................................................................	25	1	1.00	0.00	0.00	0.00	1.00
............................................................................................................................................................................TTT-CGAATACCA-----T--CAAAAAACCTC.................................................	24	1	1.00	0.00	1.00	0.00	0.00
......AAATCCCTTCCTTTTCGTACGT----AC...........................................................................................................................................................................................................................	24	1	1.00	0.00	0.00	0.00	1.00
...........CCTTCCTTTTCGTACGT----AC...........................................................................................................................................................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
....................................................................................................................................................CT-------------ATGTCGGTATTT-CGAATACCA-----T--C...........................................................	25	1	1.00	0.00	0.00	0.00	1.00
...............................................GGT-TTTCGGGTGAGGTTT--CTGA.....................................................................................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
.......................................AAGCATCAGGT-TTTCGGGTGA................................................................................................................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
......................................................CGGGTGAGGTTT--CTGATGCT---TT............................................................................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
....................................................TTCGGGTGAGGTTT--CTGATGCT---T.............................................................................................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00
....................................................TTCGGGTGAGGTTT--CTGATGCT---TTGT..........................................................................................................................................................................	26	1	1.00	0.00	1.00	0.00	0.00
.................................................................................................................................................C-CCT-------------ATGTCGGTATTT-CGAATACC.....................................................................	24	1	1.00	0.00	0.00	0.00	1.00
.......................................................................................................................................................................................CA-----T--CAAAAAACCTCACCCACCA.........................................	22	1	1.00	0.00	0.00	1.00	0.00
..............................................................GTTT--CTGATGCT---TTGTCTCTTAAGTT................................................................................................................................................................	26	1	1.00	0.00	0.00	0.00	1.00
.....................................................................................................................................................................GTCGGTATTT-CGAATACC.....................................................................	18	1	1.00	0.00	0.00	0.00	1.00
....................................................TTCGGGTGAGGTTT--CTGATGCG---..............................................................................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
.....................................................TCGGGTGAGGTTT--CTGATGCT---TTGTCTC.......................................................................................................................................................................	28	1	1.00	0.00	0.00	1.00	0.00

droSec1

TTTCAAAAATCCCTTCCTTTTCGTACGT----ACAA-AAAAGCATCAGGT-TTTCGGGTGAGGTTT--CTGATGCT---TTGTCTCTTAAGTTTTCCCT-----A--ACAATT-----------------------A----G--AC-CCT-------------ATGTCGGTATTT-CGAATACCA-----T--CAAAAAACCTCACCCACCAAATGTATGACCAGAGAGATAAAAA-TT-TCAATAAA-----	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
.....................................................................................................................................................................................................................ATATATTACCAGAGAGAT......................	18	1	4.00	0.00	4.00	0.00
.....................................................TCGGGTGAGGTTT--CTGATGCT---..............................................................................................................................................................................	21	1	4.00	2.00	0.00	2.00
....................................................TTCGGGTGAGGTTT--CTGATGC..................................................................................................................................................................................	21	1	3.00	3.00	0.00	0.00
.....................................................TCGGGTGAGGTTT--CTGATGC..................................................................................................................................................................................	20	1	2.00	0.00	0.00	2.00
.....................................................................................................................................................................................................................ATATATTACCAGAGAGATA.....................	19	1	2.00	0.00	2.00	0.00
....................................................TTCGGGTGAGGTTT--CTGATGCT---..............................................................................................................................................................................	22	1	2.00	1.00	0.00	1.00
......................................AAAGCATCAGGT-TTTCGGGT..................................................................................................................................................................................................	20	1	1.00	0.00	1.00	0.00
...........................................................................................................................................................................................................................GACCAGAGAGACAATAA-T...............	18	1	1.00	0.00	1.00	0.00
.......................................................................................................................................................................................CA-----T--CAAAAAACCTCACCCACC..........................................	21	1	1.00	0.00	1.00	0.00
...................................................................................................................................................CCT-------------ATGTCGGTATTT-CGAA.........................................................................	19	1	1.00	0.00	1.00	0.00
.........................................................................................................................................................................................................................ATGACCAGAGAGATAAAAA-TT-TCAATA.......	27	1	1.00	0.00	0.00	1.00
......................................................................................................................................................................................CCA-----T--CAAAAAACCTCACCCACCA.........................................	23	1	1.00	0.00	0.00	1.00
......................................................................................................................................................................................CCA-----T--CAAAAAACCTCACCCAC...........................................	21	1	1.00	0.00	0.00	1.00
...........................................ATCAGGT-TTTCGGGTGAGG..............................................................................................................................................................................................	19	1	1.00	0.00	1.00	0.00
.............................................................................................................AATT-----------------------A----G--AC-CCT-------------ATGTCGGT..................................................................................	19	1	1.00	0.00	1.00	0.00
........................................................................................................................................................................................................................TATTACCAGAGAGATATA...................	18	1	1.00	0.00	1.00	0.00
....................................................TTCGGGTGAGGTTT--CTGATGCT---TTGT..........................................................................................................................................................................	26	1	1.00	1.00	0.00	0.00
.......................................................................................................................................................................................CA-----T--CAAAAAACCTCACCCACCA.........................................	22	1	1.00	0.00	0.00	1.00
......................................................................................................................................................................................CCA-----T--CAAAAAACCTCACCCACC..........................................	22	1	1.00	0.00	0.00	1.00
.....................................................TAGGGTGAGGTTT--CTGATGCT---T.............................................................................................................................................................................	22	1	1.00	1.00	0.00	0.00
.......................................AAGCATCAGGT-TTTAGGGTGAGG..............................................................................................................................................................................................	23	1	1.00	0.00	1.00	0.00
....................................................................................................................................................................................................................AATGTATGACCAGAGAGATAAAA..................	23	1	1.00	1.00	0.00	0.00

droYak2

TTAAAA-AA----------TACGTGCGT----ACAAAAAAAGCATCAGGT-TTTCGGGTGAGGTTT--CTGATGCT---TTGTCTCTTAAGTTTTTCCT-----A--ACAACT-----------------------A----G--TC-CCT-------------ATGTTGGTACTA-CGAATACCAA----AT-CAAAAAACCTCACCCACCAAAAGTATGAACAGAGAGATAAAAA-TT-TCAATATA-----	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.....................................................TCGGGTGAGGTTT--CTGATGCT---T.............................................................................................................................................................................	22	1	5.00	0.00	0.00	0.00	0.00	5.00
.......................................................................................................................................................................................CAA----AT-CAAAAAACCTCACCCAC...........................................	22	1	2.00	0.00	0.00	0.00	0.00	2.00
.......................................................................................................................................................................................CAA----AT-CAAAAAACCTCACCCACC..........................................	23	1	2.00	0.00	0.00	1.00	1.00	0.00
.....................................................TCGGGTGGGGTTT--CTGATGCT---TC............................................................................................................................................................................	23	1	1.00	0.00	0.00	0.00	1.00	0.00
.....................................................TCGGGTGAGGTTT--CTGATGCT---TTG...........................................................................................................................................................................	24	1	1.00	0.00	0.00	1.00	0.00	0.00
......................................................CGGGTGAGGTTT--CTGATGCT---TTGA..........................................................................................................................................................................	24	1	1.00	0.00	0.00	0.00	0.00	1.00
..........................................CATCAGGT-TTTCGGGTGAGG..............................................................................................................................................................................................	20	1	1.00	0.00	0.00	1.00	0.00	0.00
.......................................................................................................................................................................................CAA----AT-CAAAAAACCTCACCCACT..........................................	23	1	1.00	0.00	0.00	0.00	0.00	1.00
.....................................................TCGGGTGAGGTTT--CTGATGCT---TT............................................................................................................................................................................	23	1	1.00	0.00	0.00	0.00	0.00	1.00
.....................................................TCGGGTGAGGTTT--CTGATGCT---TTGTC.........................................................................................................................................................................	26	1	1.00	0.00	0.00	0.00	0.00	1.00
.......................................................................................................................................................................................CAA----AT-CAAAAAACCTCGCCCA............................................	21	1	1.00	0.00	0.00	0.00	0.00	1.00
.............................................................GGTTT--CTGATGCT---TTGTCTCTTAAGT.................................................................................................................................................................	26	1	1.00	0.00	0.00	1.00	0.00	0.00
..........................................CATCAGGT-TTTCGGGTGAG...............................................................................................................................................................................................	19	1	1.00	1.00	0.00	0.00	0.00	0.00
..........................................CATCAGGT-TTTAGGGTGAGGTTT--CTGA.....................................................................................................................................................................................	27	1	1.00	0.00	0.00	1.00	0.00	0.00

droEre2

CT---------AT----TGTACGTAAGC----ATTA-TTAAGCATCAGGT-TTTCGGGTGAGGTTT--CTGATGCT---TCGTCTCTTAAGTTTTCCAT-----A--ACAATT-----------------------G----G--TC-CCT-------------ATGTTGGTATTA-CAAATACCAT----AC-CAAAAAACCTCACCCACCAAATGTATGAACAGAGAGATAAAAA-TT-TCAATAAA-----	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
..........................................CATCAGGx-TTTCGGGTGAG...............................................................................................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
...........................................ATCAGGT-TTTCTGGTGAG...............................................................................................................................................................................................	18	1	1.00	1.00	0.00	0.00	0.00
.....................................................................TGATGCT---TCGTCTCTTACG..................................................................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
.....................................................TCGGGTGAGGTTT--CTGATGCT---TCG...........................................................................................................................................................................	24	1	1.00	0.00	0.00	0.00	1.00
..........................................CATCAGGT-TTTCGGGTGAG...............................................................................................................................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
........................................................................................................................................................................................................................TATGAACAGAGAGATAAA...................	18	1	1.00	0.00	0.00	0.00	1.00
..................................TA-TTAAGCATCAGGT-TTTCGGG...................................................................................................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
...................................................................................................................................................................................ATACCAT----AC-CAAAAAACCTCACCCACC..........................................	27	1	1.00	0.00	0.00	0.00	1.00

droAna3

T---------CTCTACATTAATATTATC----ATGG-AAAAGCATCAGTTTTTTCGGGTGAGGTTATACTGATGCT---TAGTCATTTCAATTGCCCAA-----A--ATAATT-----------------------G----A--AT-TTT--------------AATTGGTATTTTTCAATACCC-----A--AGACTAACCTCACCCACCAAATATATGAACAAAGAGATATAAA-TT-TCAATAAA-----	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
.....................................................TCGGGTGAGGTTATACTGATGC..................................................................................................................................................................................	22	1	8.00	2.00	5.00	1.00	0.00
......................................................................................................................................................................................CCC-----A--AGACTAACCTCACCCACC..........................................	22	1	8.00	0.00	7.00	0.00	1.00
.....................................................TCGGGTGAGGTTATACTGATGCT---..............................................................................................................................................................................	23	1	5.00	1.00	4.00	0.00	0.00
.......................................................................................................................................................................................CC-----A--AGACTAACCTCACCCACCA.........................................	22	1	5.00	0.00	3.00	1.00	1.00
.....................................................TCGGGTGAGGTTATACTGATG...................................................................................................................................................................................	21	1	3.00	0.00	3.00	0.00	0.00
......................................................................................................................................................................................CCC-----A--AGACTAACCTCACCCACCA.........................................	23	1	3.00	0.00	1.00	1.00	1.00
......................................................................................................................................................................................CCC-----A--AGACTAACCTCACCCAC...........................................	21	1	3.00	1.00	2.00	0.00	0.00
........................................................................................................................................................................................C-----A--AGACTAACCTCACCCACC..........................................	20	1	1.00	1.00	0.00	0.00	0.00
.....................................................................................................................................................................................ACCC-----A--AGGCTAACCTCACCCACCA.........................................	24	1	1.00	0.00	0.00	0.00	1.00
...............................................GTTTTTTCGGGTGAGGTTATACTGA.....................................................................................................................................................................................	25	1	1.00	1.00	0.00	0.00	0.00
......................................................CGGGTGAGGTTATACTGATTCT---..............................................................................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
......................................................CGGGTGAGGTTATACTGATGCT---..............................................................................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
...........................................................................................................................................................................................................................GAACAAAxAGATATAAA-AT-.............	18	1	1.00	0.00	0.00	0.00	1.00
...........................................ATCAGTTTTTTCGGGTGAGGTTATACT.......................................................................................................................................................................................	27	1	1.00	0.00	0.00	0.00	1.00
........................................................................................................................................................................................C-----A--AGACTGACCTCACCCACC..........................................	20	1	1.00	0.00	1.00	0.00	0.00
..............................................................................................................................................................................................A--AGACTAACCTCACCCACCA.........................................	20	1	1.00	0.00	1.00	0.00	0.00
.........................................GCATCAGTTTTTTCGGGTGAGGT.............................................................................................................................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
.......................................................................................................................................................................................CC-----A--AGACTAACCTCACCCACT..........................................	21	1	1.00	0.00	1.00	0.00	0.00
........................................................................................................................................................................................C-----A--AGACTAACCTCACCCACCA.........................................	21	1	1.00	0.00	1.00	0.00	0.00
......................................................CGGGTGAGGTTATACTGATGAT---..............................................................................................................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
...........................................................................................................................................................................ATTTTTCAATACCC-----A--AGACTAACCTCACC..............................................	29	1	1.00	0.00	0.00	0.00	1.00
.............................................................................................................................................................................TTTTCAATACCC-----A--AGACTAACCTCACC..............................................	27	1	1.00	0.00	1.00	0.00	0.00
....................................................................................................................................................TT--------------AATTGGTATTTTTCAATAC......................................................................	21	1	1.00	0.00	1.00	0.00	0.00
......................................................................................................................................................................................CCC-----A--AGACTAACATCACCCACCA.........................................	23	1	1.00	0.00	0.00	1.00	0.00
......................................................................................................................................................................................CCC-----A--AGACTAACCTCATCCACC..........................................	22	1	1.00	0.00	1.00	0.00	0.00
...................AATCTTATC----xTGG-AAAAGC..................................................................................................................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00
.....................TATTATC----ATGG-AAAAGCATC...............................................................................................................................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
...................................................TTTAGGGTGAGGTTACAC........................................................................................................................................................................................	18	1	1.00	0.00	0.00	0.00	1.00
...................AATATTATC----xTGG-TAAAGC..................................................................................................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
...................................................TTTCGGGTGAGGTTATACTG......................................................................................................................................................................................	20	1	1.00	0.00	0.00	0.00	1.00
.....................................................TCGGGTGAGGTTATACTTATGCC---..............................................................................................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00
......................................................................................................................................................................................CCC-----A--AAACTAACCTCACCCAGC..........................................	22	1	1.00	0.00	0.00	1.00	0.00
..................TAATATTATC----xTGG-TAAAGC..................................................................................................................................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00
.........................ATC----GTGG-AAAAGCATCGGTTT..........................................................................................................................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
................................ATGG-AAAAGCATCAGTTTTTT.......................................................................................................................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
.................................................................................................................................................T-GTT--------------AATTGGTATTTTTTA..........................................................................	19	1	1.00	0.00	1.00	0.00	0.00
.....................................................TCGGGAGCGGTTATACTGATG...................................................................................................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00

dp4

C---------CCCGTCAATATTGTAATT----AAAATAAAAGCATCCGAG-CTTCGGGTGAGGTTA--TGGATGCATTTTGATCTCTGCACTTATCTCC-----A--A--------------------------------------------------AACCCCCTTTTGTATGGAAACATACCA-----CC-CAAATAACCTCACCCACCAAAT-TATGAACAAAGAGAAAAAAA-TT-TCAATAAA-----	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
...............................................................................TGATCTCTGCACTTATCTC...........................................................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
....................TTGTAATT----AAAATAAAAGG..................................................................................................................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00

droPer1

C---------CCCGTCAATATTGTAATT----AAAATAAAAGCATCCGAG-CTTCGGGTGAGGTTA--TGGATGCATTTTGATCTCTGCACTTATCTCC-----A--A--------------------------------------------------AACCCCTTTTTGTATGGAAACATACCA-----CC-CAAATAACCTCACCCACCAAAT-TATGAACAAAGAGAAAAAAA-TT-TCAATAAA-----	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
....................................................................................TCTGCACTTATCTCC-----A--A--------------------------------------------------AACCCCTTT......................................................................................	26	1	3.00	0.00	0.00	0.00	0.00	3.00
.................................................................A--TGGATGCATTTTGATCT........................................................................................................................................................................	18	1	2.00	0.00	0.00	0.00	0.00	2.00
......................................................CGGGTGAGGTTA--TGGATGCA.................................................................................................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00	0.00
......................................................CGGGTGAGGTTA--TGGATGC..................................................................................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00	0.00
..................................AATAAAAGCATCCGAG-CTTCGGGT..................................................................................................................................................................................................	24	1	1.00	1.00	0.00	0.00	0.00	0.00

droWil1

T---------CT------TACTGTTAT------CCA-AAAATCATCACGG-TTTCGGGTGAGGTTA--GTGATGACTTTTCCTTTT----------TCA-----A--ACAACT------A----------------A----A--AT-TTTAATTCCAAAAACCCTTTCGGTATAG-ACAATACCA-----A--AAAAAAACCTCACCCACCAAATATATGAACAAAGAGAAACAAA-TTTTCA----------	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.....................................................................................................................................................................................................................ATATATGAAAAAAAAGAA......................	18	2	0.50	0.00	0.50	0.00	0.00
......................................................CGGGTGAGGTTA--GTGATGACTTT..............................................................................................................................................................................	23	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................................................................................................ACCA-----A--AAAAAAACCTCACCCA............................................	21	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................A-----A--CTAAxx------A----------------A----A--AT-TTTAATT...................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
.....................................................TCGGGTGAGGTTA--GTGATGACTTTT.............................................................................................................................................................................	25	1	1.00	0.00	0.00	1.00	0.00
............................................TCACGG-TTTCGGGTGAGGTTA--GTGA.....................................................................................................................................................................................	25	1	1.00	0.00	1.00	0.00	0.00
.......................................................................................................................................................................................CA-----T--CAAAAAACCTCACCCAC...........................................	20	1	1.00	0.00	1.00	0.00	0.00
............................................................................................................................................................................................................................AACAAAGAGCAACAAA-GT..............	18	1	1.00	0.00	1.00	0.00	0.00

droVir3

TT---------CT-----TGTCGTACG-ACTTAT-G-AGAAGCATCTAG--TTTCGGGTGAGGTTTT-ATGATGCAATTCTCGCTCTA--------TCCCATCTTGAAC-ATACGTTCCAAAATAAATACATAATAA-AAAAATCC-CCT-------------GCTTTGGTATTT-AAGCTACCAA----CCAAAAAAAACCTCACCCACCAAATGTATGAACAAAGAGATAAAAAATTTTCAATACACCATG	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.......................TACG-ACTTAT-G-AGAAGCATCTAG--T.........................................................................................................................................................................................................	24	1	1.00	1.00	0.00	0.00	0.00	0.00
.........................................................................................................................................................................................................................ATGAACAAAGAGATAAAAAAT...............	21	1	1.00	1.00	0.00	0.00	0.00	0.00
.....................................................TCGGGTGAGGTTTT-ATGATGC..................................................................................................................................................................................	21	1	1.00	1.00	0.00	0.00	0.00	0.00
...........AA-----TGTCGTACG-ACTTAT-G-AGAAGC..................................................................................................................................................................................................................	24	1	1.00	1.00	0.00	0.00	0.00	0.00
.T---------AA-----TGTCGTACG-ACTTAT-G-AGAAGCATCT..............................................................................................................................................................................................................	29	1	1.00	1.00	0.00	0.00	0.00	0.00
.........................................GCATCTAG--TTTCGGGTGA................................................................................................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00	0.00
...........................................ATCTAG--TTTCGGGTGAGGT.............................................................................................................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00	0.00
...........................................ATCTAG--TTTCGGGTGAGGTTTT-ATGATGC..................................................................................................................................................................................	29	1	1.00	1.00	0.00	0.00	0.00	0.00
.......................................................................................A--------TCCCATCTTGAAC-ATACGTT........................................................................................................................................	21	1	1.00	0.00	0.00	1.00	0.00	0.00
...................................................TTTCGGGTGAGGTTTT-ATGATG...................................................................................................................................................................................	22	1	1.00	0.00	0.00	1.00	0.00	0.00
.............................................CTAG--TTTCGGGTGAGGTTTT-ATGATGC..................................................................................................................................................................................	27	1	1.00	0.00	0.00	1.00	0.00	0.00
...........................................ATCTAG--TTTCGGGTTAGG..............................................................................................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00	0.00
.........................................GCATCTAG--TTTCGGGTGAGGTTTT-ATG......................................................................................................................................................................................	27	1	1.00	1.00	0.00	0.00	0.00	0.00
........................................................................................................................................................................................................................TATGAACAAAGAGATAAAAAAT...............	22	1	1.00	1.00	0.00	0.00	0.00	0.00
...........................................ATCTAG--TTTCGGGTGAGGTTTT-ATGAT....................................................................................................................................................................................	27	1	1.00	0.00	0.00	1.00	0.00	0.00
.................................................................................................GCCATGTTGAAC-ATACGT.........................................................................................................................................	18	1	1.00	0.00	0.00	1.00	0.00	0.00

droMoj3

TA---------CT-----TGTTGTACA-GCTTGT-G-AGATGCATCAGAT-TTTCGGGTGAGGTTTT-ATGATGCAGTACT--CCATG--------TCCCACTCCGAAT-ACT------AAAAT-----------AAAAAGAATCCTTCT-----------CCCATTTGGTATTA-AAGCCACCCA----CC-AAAAAAACCTCACCCACCAAACATATGAACAAAGAGATACAAAATATTCAATACAACAAC	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.......................................ATGCATCAGAT-TTTCGGGT..................................................................................................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
.....................................................TCGGGTGATGTTTT-ATGATG...................................................................................................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
.....................................................TCGGGTGAGGTTTT-ATGATGC..................................................................................................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00

droGri2

G-------------------TCGTACG-ACT-AATG-AAATGCATCTAGT-TTTCGGGTGAGGTTT--TAGATGCGT---------------TTCCCCC-----A--GAAAAT----------------------AA----A--AC-ACT-----------CCTTTTTGGTATTT-AAACTACAAAAAAAAA-AAAAAAACCTCACCCACCAAATATATGAACAAAGAGATAAAAT-AT-TCAATAAACCAAC	Size	Hit Count	Total Norm	V109 Male body
.................................................................T--TAGATGCGT---------------TTCCCCC-----A--GAA...............................................................................................................................................	21	1	1.00	1.00
.....................CGTACG-ACT-AATG-AAATGCATC...............................................................................................................................................................................................................	22	1	1.00	1.00

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image													None		None
UNAFold Image													None		None