Possible Orthologs for dme-mir-4950

droSim1 - 181 hits found

Lastz ID Coordinate Normalized Identity % Sequence RNAfold UNAfold
363 chr3R:3321450-3321569 + 75.18
TTTATACAT-TTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTATATATATTATTTATTATGCTCAGCATAAATGCCAAGCATTCGTCGTGAAATTATAAATTATATATTATATAAATTCATGGTAAGGCTTCATTTTTTAACGCAGTCTAAGACATCTT----
SizeHit CountTotal NormV044
Embryo
M023
Head
M024
Male body
M025
Embryo
.................................TGCCAAGCATTCGTCGTGAAATTATAAA...............................................................2811.000.000.000.001.00
1281 chrU:11449242-11449358 - 53.03
TTTATACATTTGTTTATAATGCACATA-ATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGT--AAGGCT-TTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTACAAATTTTATGTTA--GCAAATGTTCAAATGTAATCAAGTGTTCAAGTAATCAA--------ACAATATGTGAGGCAGAGTTTGAGGCCATGATTTAATATTTCGAATTAAAATAACTTTCTT
SizeHit CountTotal NormV044
Embryo
M023
Head
M024
Male body
M025
Embryo
...............GTA--GCAAATATTCAAATG............................................................................................1815.000.002.003.000.00
........................................................AA--------ACAATxCGTGAGGCAGA............................................1811.000.001.000.000.00
98 chr2L:20548086-20548205 + 51.91
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCA-----ATCAAAGACATCTTTCTT
CACACAAGTTTCACTCAGATGCAGATGGTCACCAACTGCCCTTT----TTTCAACATAAATATAATCAT----AAATGTGTGTGAATATTTTATCATTTATTTACATAAAATAACCGACCGCACGATT
SizeHit CountTotal NormV044
Embryo
M023
Head
M024
Male body
M025
Embryo
....................GCAGATGAACACCAACTG..........................................................................................1811.000.001.000.000.00
114 chr2L:21055809-21055937 + 51.73
TT-TATACATTTGTTTATAATGCACATAATAAATGCCAACCATT-CATCATGAAATTATAAATAGTA--TCATTTCAAGATGCATGGTAAGGCTT-TA----TTTTGTTTTGCAATCAAAGACATCTTTCTT
CTGTAGAAGGCTGTATATA-TACATATAG-AAATGATAATCAAGTTTACAGATAATAACGAGTGATACACTAATCCAA-GTGTAACGTAAGGATTATAGCCTTTTAATTAAACATTTAAAAATGTCTATTTT
SizeHit CountTotal NormV044
Embryo
M023
Head
M024
Male body
M025
Embryo
......................................................................................GTAAGTATTATAGCCTGT............................18111.000.004.007.000.00
..................................................................................................................ATTAAAAATGTCGATTTT1811.000.000.000.001.00
.............................................................................A-GTGTAACGTAAGGATTATAGCC...............................2311.000.000.000.001.00
267 chr3L:10949788-10949913 + 51.17
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTA--TTTTGTTTTGCAATCAA----------AGACATCT--TTCTT
ATTAAACAGCTGTTT----TACACTTAACAGTAACCTA------AAAATGAAGTGAATAGAAGTGGCAATTCT-GATGCATTAAAATGGTTTAGATTTGGTTTAGGTAATAAATAATTTATTGGACTTTTAATTTTA
SizeHit CountTotal NormV044
Embryo
M023
Head
M024
Male body
M025
Embryo
............................................................................................................AAAAATATTTTATTGGAC...........1813.000.000.000.003.00
...................................................................................................................ATTTTTAGGACTTTTAAT....1812.000.000.001.001.00
....................................................................ATTCT-GTTGGATTAAAAT..................................................1811.000.001.000.000.00
.............TT----TTCACTTAACTGTAAC......................................................................................................1811.000.000.000.001.00
312 chr3L:22267923-22268045 + 51.09
TTTATACATTTGTTTA-----TAATGCACATAATAAATGCCAACCATTCATCATGAAA-TTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
T--ACCCATTTACTTAACGACTTACGGGTATAAAAACTGGCAACGGTATTTCTTTCAACTTTCCAATAATTTCCTATTTA--TAAAATGTTCTACTTTATTCTTT--TATTCTCAAGAAAAAATTGTCG
SizeHit CountTotal NormV044
Embryo
M023
Head
M024
Male body
M025
Embryo
1124 chr3R:3347119-3347225 - 50.77
TTTATACATTTGTTTATAATGCACATAAT----AAATGCCAACCATT-CATCATG-AAATTATAAATAGTATC-ATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTATTATTTTTCTTCTATTTTAACTAATTTTAAAATGACACCTTTTTTGGCACACATATTTCAAAGGGTACAAATTTATAAATGCATATGATTTTCTT-GTTTGTTT----------------------
SizeHit CountTotal NormV044
Embryo
M023
Head
M024
Male body
M025
Embryo
1087 chr3R:164764-164882 - 50.69
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAA------------TAGTATCATTTCAAGATGCATGGTAAGGC--TTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
AGCATATAAGTTGTAACAATGCGTAAAAGACAACT-----G---AT--TCGAAGAATAAACACCCTTGCACTTACTATCATGTTAAGCTC----ATAAGTTCATTTATTCCG----CCCTTTTTAAAAATTTTTAAT
SizeHit CountTotal NormV044
Embryo
M023
Head
M024
Male body
M025
Embryo
......................................................................CTTACTATCATCTGAAGCT................................................1911.000.000.001.000.00
774 chr2h_random:3094518-3094643 - 50.3
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCAT----TCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTT------------GTTTTGCAATCAAAGACATCTTTCTT
T-------------CGTAATTTATGCAAGATATGTTGACAATTGTTTTTCCTAGAACTTATTAATTATTTCAGAACATTTTTCATTTTGACGCTAAACTCATATTTCCCGTGTTCTCCTCAATCAGGACCATTTTATTT
SizeHit CountTotal NormV044
Embryo
M023
Head
M024
Male body
M025
Embryo
........................................................................................................................AATAAGGACAATTTTATT.181857.002.00336.0051.00468.00
........................................................................................................................AATAAGGACAATTTTATTT1911.000.000.000.001.00
.......................................................................................................................CAATAAGGACAATTTTATT.1911.000.000.000.001.00
.........................AATGATATGTTGACAATT................................................................................................1811.000.000.001.000.00
222 chr2R_random:524591-524712 + 49.99
TTTATACATTTGTTTATAAT--GCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TGTAGATATGTAGATGTAATATTTCTATGAGAGAGGACGAAAAGTTCCCAAAA-TATATAACAAATTCCCGGCTAAGAAATATTTAATTTTTTTATTTTTTATAACAG--AAATATTTCATTTTT
SizeHit CountTotal NormV044
Embryo
M023
Head
M024
Male body
M025
Embryo
.........................................AAGGTCCCAAAA-TATATG.................................................................1812.000.000.002.000.00
...AGATATGTAGATGTAATATTT.....................................................................................................2111.000.000.001.000.00
..........................................................................................TTTTTTTTTTTATAACAA--...............1890.110.000.000.110.00
403 chr4:403255-403368 + 49.66
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTGTGACATTTTTTGATATCCTAATACTGC--GATATTCCTTTATTGCGGGATAA--CATAAAAATATTTA--TATT-GCTGTAAGAATTTATT--ATTTTGAACGAAGAAACCAGATGCTT
SizeHit CountTotal NormV044
Embryo
M023
Head
M024
Male body
M025
Embryo
TTTCTGAGATTTTTTGAT.........................................................................................................1820.500.500.000.000.00
.....................................................................................................TGAACGAGGAAACCAGAA....1811.000.001.000.000.00
1135 chr3R:6181246-6181370 - 49.46
TTT-----ATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGG--TAAGGCTTTATTTTGTTTT----GCAATCAAAGACATCTTTCTT
TTAGAAGTAGGCAATTAATTTACTTGCACTTGCAAAAAACAAGTCATTAATCATTTAAA-----AT-AGGTCTGTTCCGACTTTTTGACACCATGCTTTTTTTTTTTTAGTACGCTGTCAGCAAACACA---AT
SizeHit CountTotal NormV044
Embryo
M023
Head
M024
Male body
M025
Embryo
63 chr2h_random:2188244-2188363 + 49.21
TTTATACATTTGTTTATAATGCACATAATAAATG----------------------------------------------CCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
CATGTGCCTATGATT-TGTTTCATATAGTAGATGATGTATTAACTATGTTGTATCTGTTCTAGCTAAATGGCACGTAGACTCGTTTATACACTACGAACATGTAAATAATGTTATT------------------------------------------------TTCTT
SizeHit CountTotal NormV044
Embryo
M023
Head
M024
Male body
M025
Embryo
939 chr2R_random:162062-162187 - 49.13
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAA-ATAGTATCATTTCAA----------------GATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTAGACTGTTCAGAGCAACAAACATATT------------TTGAAAATGAGAATAGAATTTAGAATCAAGACAAAAATATGTTAACAATGAATGCATA--AAAATATTATTAAGCGTAAGAATCCAATTTGTAGTTCTA
SizeHit CountTotal NormV044
Embryo
M023
Head
M024
Male body
M025
Embryo
......................................................................................CAATGAATGCAGA--AAACT..................................1811.000.000.000.001.00
219 chr2R_random:475799-475915 + 49.13
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATT-CATCATGAAATTATAAATAGTATCATTT--CAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
GTAAAATAAACTTTACAAATGCGCAAACTAAAAGTTATGTATGCTATTATGTAAGCTTAAATAAAAACTCTTAATAAAAAATATAAACACATATTACCT------AAAAGCAAACC---CACCCTT
SizeHit CountTotal NormV044
Embryo
M023
Head
M024
Male body
M025
Embryo
343 chr3R:249729-249854 + 49.1
TTTATA---C-----------------------------ATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAAT--AGTATCATTTCA----AGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTGTCGTACAAAATATTAAACAGAGCAGAAACAATTAAATTTGCAAATAA--------------------CATTGAACATTG--------ATAGAATATCATTTCGCAAAATATTCCTAGAGAAGCTACAATACTCTCTGCAAT-------ATCATTCTT
SizeHit CountTotal NormV044
Embryo
M023
Head
M024
Male body
M025
Embryo
607 chrX:16297117-16297220 + 48.76
TTTATACATT-------TGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTT---TGCAATCAAAGACATCTTTCTT
ATACAACATTCCAAATATAAATATACTATATATAATT-----------------------------ACAGTATCAGTGCGCAAAACATGAGCATGATTTATATTCTGCTCCAGCAATTAAAAGTAATTGTTTT
SizeHit CountTotal NormV044
Embryo
M023
Head
M024
Male body
M025
Embryo
...............................ATAATT-----------------------------ACAGTATTAGTGGG.....................................................2015.005.000.000.000.00
................................TAATT-----------------------------ACAGTATTAGTGGGC....................................................2014.000.000.000.004.00
.................................AATT-----------------------------ACAGTATTAGTGGG.....................................................1812.002.000.000.000.00
................................................................................................TTCATACTCTGCTCCAGC...................1811.000.000.000.001.00
...................................................................................................................................AT1840.250.250.000.000.00
103 chr2L:20794246-20794370 + 48.76
TTTATACATTTGTTTATAATG----CACATAATAAA--------TGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TGTATAAATTTAAA-----TTCGCTCAATTAAGAAATTCTTTTGTGTCGCCACCGAATATTGACAAAATAAACGGTACCAATTAAAAGCGGAAGC----TATTCACCATGTTATGCTTTAAATTAC-TCTGCCTG
SizeHit CountTotal NormV044
Embryo
M023
Head
M024
Male body
M025
Embryo
790 chr2L:17654333-17654455 - 48.47
TTTATACATTTGTTTATAATGCACATAATA-----AATGCCAACCATTCATCATGAAATTATAAATAGTATCATT---TCAAGATGCATGGTAAGGCTTTATTTTGTTTT----------------------GCAATCAAAGACATCTTTCTT
TTT------TTGACGACAATGTAAATAGGATTTAAAATGGCAAT----------------TTGCAT---ATAATTCGAACAAAAAGTAGGGTA--GATTTGCTGTGTCCTAGTGATAAAACTGAATTCTTTTG---AGAAAAATATTTTTCTT
SizeHit CountTotal NormV044
Embryo
M023
Head
M024
Male body
M025
Embryo
..............................TTTGAAATTGCAAT----------------TTGCA........................................................................................1921.000.001.000.000.00
965 chr3h_random:932528-932649 - 48.13
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAA--------GACATCTTTC----------TT
A-----AATTATTTTATACTTAACTTAGAAAATAAA------ACATCT--------TAAATTTATTTATTTCACAACGAAATATAACTTTTTATTAAAACTTTCAGACAAAACGCGAAAAAAATATATTTTGGGATGGTTT
SizeHit CountTotal NormV044
Embryo
M023
Head
M024
Male body
M025
Embryo
131 chr2L:21512303-21512426 + 48.06
TTTATACATTTGTTTATA---------------------ATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCA--TGGT-AAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TATACATATATAAATGTAAATGTAAGATTTCCATTTAAAATGC------------------GTTCACC-C-GAATCCTAGACAGTTTTCCCAAAA---GCAATTGTTACAAGCTTATTTTAGGTCAGCCATTAGGGAGAACTCTTCG
SizeHit CountTotal NormV044
Embryo
M023
Head
M024
Male body
M025
Embryo


droSec1 - 282 hits found

Lastz ID Coordinate Normalized Identity % Sequence RNAfold UNAfold
101 super_6:3368064-3368189 + 76.22
TTTATACAT-TTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAG--TATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTATATATATTATTTATTATGCTCAGCATAAATGCCAAGCATTCGTCGTGAAATTATAAATTATATATTATTTCTAGATTCATGGTAAAGTTTCATTTTGTAACGCAGTCTAAGACATCTTTCTC
SizeHit CountTotal NormV113
Male body
V114
Embryo
V115
Head
334 super_30:115263-115374 + 53.67
TTTATACATTTGTTTAT-AATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
-----ACATTTTTCAATAAATGAACATAATTAAGAAAAATGAAACGACATAAAA------GTAATAACATTTCTAAATAAAACGTCAC-ATTTATTTTAATATAAAACCTACACCTTATTTTCT
SizeHit CountTotal NormV113
Male body
V114
Embryo
V115
Head
1374 super_39:33861-33977 - 53.03
TTTATACATTTGTTTATAATGCACATAA-TAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGG--TAAGGCTTT-ATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTACAAATTTTATGTTA--GCAAATGTTCAAATGTAATCAAGTGTTCAAGTAATCAA--------ACAATATGTGAGGCAGAGTTTAAGGCCATGATTTAATATTTCGAATTAAAATAACTTTCTT
SizeHit CountTotal NormV113
Male body
V114
Embryo
V115
Head
...............GTA--GCAAATATTCAAATG............................................................................................1813.000.001.002.00
..............ATTA--GCAAATATTCAAAT.............................................................................................1811.000.000.001.00
502 super_54:51463-51576 + 53.0
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAA-----TAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTATATATT----TATAATATTTATAATATATTTATAATATTTATAATATATTTATAAAATTTATAATATATTTATAATATTTATAATATATTTA----------TAATATTTATAATATATTTATT
SizeHit CountTotal NormV113
Male body
V114
Embryo
V115
Head
........................................................TAAAGTTTATAATTTATTT.....................................................1912.000.002.000.00
...................................................ATTTATAAAGGTTATAAT...........................................................1811.000.001.000.00
1493 super_54:94904-95027 - 52.83
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGC---ATGGTAAGGCTTTATT---------------TTGTTTTGCAATCAAAGACATCTTTCTT
TTCAAAGATTTATTGTTAATGTATATATAAAGT---------CCATGAAATGGTTACAAAAATCAGAATCCCATAAATGAACAT-----GGGTTTGCCGTGTGTGCTACTTTCTTAAATTTTAATGTATG---ACTTTAAT
SizeHit CountTotal NormV113
Male body
V114
Embryo
V115
Head
612 super_88:108026-108132 + 52.76
TTTATACATTTGTTTATAATGCACATAATAAATGCC-------AACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTCATAAATTTGTTAAACATGCGAAAAACAAAGGCACTGATCGAATTTATAAAAATGAAATAAAAATTAACTATAACTCTG----------------GTATTTCG--GTACAACCAAAATCGT-----TT
SizeHit CountTotal NormV113
Male body
V114
Embryo
V115
Head
.................AATGAGAAAAACAAAGGC...............................................................................................1811.000.001.000.00
1065 super_6:4252957-4253075 - 52.66
TTTATACATTTGTTTATAATGCACATAATAAATGCC-AACCATTCATCATGAAATTA---TAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
ATCACACATTAGGTTA---TGTACAGAGGAATTACTGAACGATTCCTTTTGAAACCTTAATAAATAGAATTTGCTTTGATCAAAAAAAAAAGATTTATA----TGTACAACTATATATATAGTTA-T
SizeHit CountTotal NormV113
Male body
V114
Embryo
V115
Head
.....................TACAGAGGAATTACTGAACGAT....................................................................................2214.003.000.001.00
.............TTA---AGTTCAGAGGAATTACT...........................................................................................2022.000.000.002.00
..........AGGTTA---AGTTCAGAGGAATTA.............................................................................................2121.500.000.001.50
..........AGGTTA---AGTTCAGAGGAATTAC............................................................................................2221.500.500.001.00
........TTAGGTTA---AGTTCAGAGGAAT...............................................................................................2121.501.500.000.00
ATCACACATTAGGTTA---AGTTC.......................................................................................................2121.500.500.001.00
............GTTA---AGTTCAGAGGAATTACT...........................................................................................2121.500.500.001.00
........TTAGGTTA---TGTACAGAGGAAT...............................................................................................2112.000.000.002.00
..........AGGTTA---TGTACAGAGGAATTA.............................................................................................2112.002.000.000.00
.......................CAGAGGAATTACTGAACGATT...................................................................................2121.000.500.500.00
ATCACACATTAGGTTA---AGTT........................................................................................................2021.000.500.500.00
.....................TACAGAGGAATTACTGAACG......................................................................................2011.001.000.000.00
........TTAGGTTA---TGTACAGAGAAATT..............................................................................................2211.000.000.001.00
...............................TTACTGAACGATTCCTTTTGAAACCT......................................................................2620.500.000.500.00
.TCACACATTAGGTTA---AGTTCAGAGGAA................................................................................................2720.500.000.000.50
.TCACACATTAGGTTA---AGTTCA......................................................................................................2120.500.000.000.50
.............TTA---AGTTCAGAGGAATTACTG..........................................................................................2120.500.000.500.00
.......ATTAGGTTA---AGTTCAGAGGAA................................................................................................2120.500.000.000.50
................................TACTGAACGATTCCTTTTGA...........................................................................2020.500.500.000.00
...............................TTACTGAACGATTCCTTTTGATACCT......................................................................2620.500.000.500.00
.......ATTAGGTTA---TGTACAGAGGAAT...............................................................................................2211.001.000.000.00
........TTAGGTTA---AGTTCAGAGGAATTAC............................................................................................2420.500.000.000.50
......................TCAGAGGAATTACTGAACGA.....................................................................................2020.500.500.000.00
...............................TTACTGAACGATTCCTATTGAAACCTT.....................................................................2720.500.000.500.00
........TTAGGTTA---AGTTCAGAGGAA................................................................................................2020.500.500.000.00
........TTAGGTTA---TGTACAGAGGA.................................................................................................1911.000.000.001.00
........TTAGGTTA---AGTTCAGAGGA.................................................................................................1920.500.500.000.00
...............................TTACTGAACGATTCCTATTGAAACCT......................................................................2620.500.000.500.00
.........TAGGTTA---AGTTCAGAGGAA................................................................................................1920.500.000.000.50
......CATTAGGTTA---TGTACAGATGA.................................................................................................2111.001.000.000.00
........TTAGGTTA---TGTACAGAGGAATTACTGA.........................................................................................2711.000.001.000.00
...............................TTACTGAACGATTCCTTTTGAAACCTT.....................................................................2720.500.000.500.00
................................TACTGAACGATTCCTTTTGAACCCTTAA...................................................................2820.500.000.500.00
.......................................................................TGCTTTGATCAGAAACAA......................................1811.000.001.000.00
...............................TTACTGAACGATTCCTTTTGAAACC.......................................................................2520.500.000.000.50
......CATTAGGTTA---AGTTCAGAGG..................................................................................................2020.500.500.000.00
.............................................................................GAAAAAAAAAAAAAGATT................................1811.000.000.001.00
.......ATTATGTTA---TGTTCAGAGGAA................................................................................................2120.500.000.000.50
.............................AATTACTGAACGATTCCTTTT.............................................................................2120.500.500.000.00
...ACACATTAGGTTA---AGTTCAG.....................................................................................................2020.500.000.000.50
....................................GAACGATTCCTTTTGAAACCT......................................................................2120.500.000.000.50
...............................TTACTGAACGATTCCTTTTG............................................................................2020.500.000.000.50
......................TCAGAGGAATTACTGAACGAT....................................................................................2120.500.500.000.00
1060 super_6:3391122-3391232 - 52.42
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATG----------AAATTATAAATAGTATC-ATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
CTTTTAAATTTTTTTCTTACTATTTTAAGTAATTTTAAAATGACACCTTTTTGGGCACACATATTTCAAAGGGTACAAATTTATAAATGCATATGATTTTTTTGT-TTGTTT----------------------
SizeHit CountTotal NormV113
Male body
V114
Embryo
V115
Head
...........................................................................................TATGATTTGTTCGT-TTGTTT----------------------2011.000.000.001.00
342 super_30:243070-243190 + 52.38
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTA-TAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAA--GACATCTTTCTT
TTTG---ATGTGTTAATGTTTCGACTGATCAGAG--GAACATTTTTTGTGACATTTTTTGATATCCTAATACTGCGATGCATACTGCGATATTCCTTTATTGCGGGATAACATAAAAATATTTATA
SizeHit CountTotal NormV113
Male body
V114
Embryo
V115
Head
........................................ATTTTTTGTAAGATTTTTT...................................................................1912.000.002.000.00
.........................................TTTTTTGTAAGATTTTTT...................................................................1820.500.000.500.00
.......................................CATTTTTTGTGGCATATTT....................................................................1911.000.001.000.00
895 super_8259:1001-1112 + 52.02
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGT-ATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
ATT---CATTTTTTTATTTTTTATACAAGAAATATAA--TAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATATTTCATTTTTTTTTACTTT-------TTATTTTTT
SizeHit CountTotal NormV113
Male body
V114
Embryo
V115
Head
.........................................................................................TTTCATTTCTTTTTAGTTT-------TT.......2121.500.001.500.00
........................................................................TTATAAGAATAATAATATT.................................1940.750.000.750.00
.........................................ATAATAATGATAATAAGAA................................................................19300.030.000.030.00
.........................................................................TATAAGAATAATAATATT.................................1890.110.000.110.00
.................................................................ATAATAATGATAATAAGAA........................................19300.030.000.030.00
................................TATAA--GAATAATAATATT........................................................................1890.110.000.110.00
..................................................ATAATAATGATAATAAGAA.......................................................19300.030.000.030.00
....................................A--TAATAATGATAATAAGAA...................................................................19300.030.000.030.00
........................................................................TTATAAGAATAATAATAT..................................1850.200.000.200.00
..............................................................ATAATAATGATAATAAGAA...........................................19300.030.000.030.00
.................................................................................................TTTTTTTTTTT-------TTATTTTTT22130.080.000.080.00
............................................ATAATAATGATAATAAGAA.............................................................19300.030.000.030.00
....................................................................................................TTTTTTTT-------TTATTTTTT20280.040.040.000.00
.....................................................ATAATAATGATAATAAGAA....................................................19300.030.000.030.00
.............................AAATATAA--TAATTATAAAAAT........................................................................2130.330.000.330.00
..................................................................................................TTTTTATTTT-------TTTTTTTTT22150.070.070.000.00
...............................................ATAATAATGATAATAAGAA..........................................................19300.030.000.030.00
.................................ATAA--TAATGATAATAAGAA......................................................................19300.030.000.030.00
........................................................ATAATAATGATAATAAGAA.................................................19300.030.000.030.00
....................................................................ATAATAATGATAATAAGAA.....................................19300.030.000.030.00
...........................................................ATAATAATGATAATAAGAA..............................................19300.030.000.030.00
290 super_28:25124-25250 + 51.97
TT-TATACATTTGTTTATAATGCACATAATAAATGCCAACCAT-TCATCATGAAATTATAAATAGTATCAT--TTCAAGATGCATGGTAAGGCTTTAT---TTTGTTTTGCAATCAAAGACATCTTTCTT
CTGTAGAAGGCTGTATAT-GTACATATA-GAAATGATAATCAAGTTTACAGATAATAATGAGTGATACAGTAATCCAA-GGGTAACGTAGGATTATAGCCTTTTAATTAAACATTTAAAAAATGTCTATT
SizeHit CountTotal NormV113
Male body
V114
Embryo
V115
Head
...................ATATATAxA-GAAATGATAAT..........................................................................................1913.000.003.000.00
....................TATATAxA-GAAATGATAAT..........................................................................................1830.670.000.670.00
1233 super_26:173749-173859 - 51.46
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTATATATTTATATATATTATATATATATAATAATATTTAT-------ATATTTATATAT---ATTATTTATATATATATAT-ATATATATATCCTCCT-TTAAATTTAATATATAATTCTT
SizeHit CountTotal NormV113
Male body
V114
Embryo
V115
Head
................................TTATATTTAT-------ATATTTAAA.................................................................1940.250.000.250.00
576 super_76:28355-28457 + 51.07
TTTATACATTTGTTTATAATGCACA--TAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TATAGACACTTTCTGATTATGTAAACGAAGTAGACGATAGCCATTAACCAGTAAACCAAAGACACTAGAATAACAAGATGCGT--AACGGCCCTACATTGGTTTG--------------------
SizeHit CountTotal NormV113
Male body
V114
Embryo
V115
Head
.......................................................................AACAAGATGCGT--AACGGCCATACA............................241311.0054.00241.0016.00
.......................................................................AACAAGATGCGT--AACGGCCAT...............................211115.0029.0073.0013.00
.......................................................................AACAAGATGCGT--AACGGCCATACAT...........................251108.0017.0084.007.00
.......................................................................AACAAGATGCGT--AACGGCCATAC.............................23183.0021.0055.007.00
.......................................................................AACAAGATGCGA--AACGGCCATACA............................24176.002.0067.007.00
.......................................................................AACAAGATGCGT--AACGGCCATA..............................22160.0016.0043.001.00
.......................................................................AACAAGATGCGA--AACGGCCATACAT...........................25157.008.0038.0011.00
.......................................................................AACAAGATGCGG--AACGGCCATACA............................24137.003.0031.003.00
.......................................................................AACAAGATGCGA--AACGGCCATA..............................22132.001.0031.000.00
.......................................................................AACAAGATGCGA--AACGGCCATAC.............................23126.000.0024.002.00
.......................................................................AACAAGATGCGA--AACGGCCAT...............................21124.000.0019.005.00
.......................................................................AACAAGATGCGT--AACGGCCATAAAT...........................25123.000.0020.003.00
.......................................................................AACAAGATGCGT--AACGGCCATACATT..........................26123.009.0013.001.00
........................................................................ACAAGATGCGT--AACGGCCAT...............................20120.007.001.0012.00
.......................................................................AACAAGATGCGT--AACGGCCATACAA...........................25119.0010.008.001.00
.......................................................................AACAAGATGCGT--AACGGCTATACAT...........................2535.000.004.670.33
.......................................................................AACAAGATGCAT--AACGGCCATACA............................24114.000.0013.001.00
.......................................................................AACAAGATGCGG--AACGGCCATA..............................22114.003.0011.000.00
.......................................................................AACAAGATGCGT--AACGGCCATACG............................24111.000.0011.000.00
.....................................................................ATAACAAGATGCGT--AACGGCC.................................21111.006.002.003.00
.......................................................................AACAAGATGCGT--AATGGCCAT...............................21110.001.008.001.00
.......................................................................AACAAGATGCGT--AATGGCCATACAT...........................25110.000.0010.000.00
.......................................................................AACAAGATGCGT--AACGGCCATAAATT..........................2619.000.008.001.00
.......................................................................AACAAGATGCGT--AACGGGCAT...............................2118.002.006.000.00
.......................................................................AACAAGATGCGG--AACGGCCAT...............................2118.003.003.002.00
.......................................................................AACAAGATGCGT--AATGGCCATACA............................2418.000.008.000.00
.......................................................................AACAAGATGCGT--AACGGCCATAAA............................2418.000.008.000.00
.......................................................................AACAAGATGTGT--AACGGCCATACA............................2417.001.006.000.00
.......................................................................ATCAAGATGCGT--AACGGCCATACA............................2417.000.007.000.00
.......................................................................AATAAGATGCGT--AACGGCCATACA............................2432.330.332.000.00
.....................................................................ATAACAAGATGCGT--AACGGCCT................................2217.004.000.003.00
.......................................................................AACAAGTTGCGT--AACGGCCA................................2016.000.006.000.00
.......................................................................AACAAGATGCAT--AACGGCCATACATT..........................2616.001.003.002.00
.......................................................................AACAAGATGCGT--AACGGCC.................................1916.001.005.000.00
.......................................................................AACAAGATGCGG--AACGGCCATAC.............................2316.001.005.000.00
.......................................................................AACAAGATGCGT--AACGGCCACACAT...........................2516.000.004.002.00
.......................................................................AACAAGATGCGT--AACGGCCATACGTT..........................2616.000.005.001.00
.......................................................................AACAAGATGCGT--AACAGCCATACAT...........................2515.001.003.001.00
........................................................................ACAAGATGCGT--AACGGCCATA..............................2115.000.000.005.00
.......................................................................AACAAGATGCGT--ATCGGCCATACATT..........................2614.000.004.000.00
.......................................................................AACAAGATGCGT--AACGGCCATACATTGG........................2814.000.004.000.00
.......................................................................AACAAGATGCGT--AACCGCCATACAT...........................2514.001.003.000.00
.......................................................................AACAAGATGCGT--AACAGCCAT...............................2114.002.001.001.00
........................................................................ACAAGATGCGT--AACGGCCATACAT...........................2414.000.003.001.00
.......................................................................AACAAGATGTGT--AACGGCCATACAT...........................2514.000.004.000.00
.......................................................................AACAAGATGCGT--AACGGCCATACATTCGT.......................2913.003.000.000.00
.......................................................................AACAAGATGCGT--AACGGCCATAA.............................2313.000.003.000.00
.......................................................................AACAAGATGCGT--AACAGCCATACA............................2413.000.003.000.00
.......................................................................AACAAGATGCGT--ATCGGCCATAC.............................2313.000.003.000.00
.......................................................................AACAAGGTGCGT--AACGGCCATACA............................2413.000.003.000.00
.......................................................................AGCAAGATGCGT--AACGGCCATACA............................2413.000.002.001.00
.......................................................................AACAAGATCCGT--AACGGCCATACA............................2413.000.003.000.00
.......................................................................AACAAGATGCGT--AACGGCCATACAAT..........................2613.001.002.000.00
.......................................................................AACAAGATGCGT--ATCGGCCATACAT...........................2513.000.002.001.00
.......................................................................AACAAGATGCGC--AACGGCCAT...............................2113.000.003.000.00
.......................................................................AACAAGATGCAT--AACGGCCAT...............................2113.000.003.000.00
.......................................................................AACGAGATGCGT--AACGGCCATACA............................2413.000.003.000.00
.......................................................................AACAAGATGCGT--AAAGGCCATACAT...........................2513.001.002.000.00
.......................................................................AACAAGATGCGC--AACGGCCATACAT...........................2513.000.003.000.00
.......................................................................AACAAGTTGCGT--AACGGCCAT...............................2113.000.003.000.00
.......................................................................AACAAGATGCGT--AACxGCCATACA............................2313.000.003.000.00
........................................................................ACAAGATGCGT--AACGGCCATACA............................2313.001.002.000.00
.......................................................................AACAAGATGCGT--AACAGCCATA..............................2213.000.003.000.00
.......................................................................AACAAGATGCAT--AACGGCCATA..............................2213.000.003.000.00
.......................................................................AACAAGATGCGT--AACxGCCATA..............................2113.001.002.000.00
1360 super_30:649662-649792 - 50.94
TTTATACA-TTTGTTTATAATGCACATAATAAA------TGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGA------TGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTCACCACTTTTTTTTTAATAATAATAATAATTAGTAATTATTATAATTAATAATTAGTTTTTAAATATTATAAGTCCCAAAATTTATTAAATGTTAATACGATTTTTGGTT--TA-AT--GAGCAGTTTTTCTT
SizeHit CountTotal NormV113
Male body
V114
Embryo
V115
Head
.................................................................................AAATTTATTxAATGATAAT....................................1811.000.001.000.00
1061 super_6:3391812-3391929 - 50.74
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTT--------ATTTTGTTTTGCAATCAA--------AGACATCTTTCTT
TTCATTTATTAAGCAGTTAAGCTTACAATTAAAGACATCAATAAATTTTCTATTA---------------------TGATTTATATGCCTTCAGTTTCAAATTTTAGTTTGCATTAAATTTTATTTTCACATCTGTATT
SizeHit CountTotal NormV113
Male body
V114
Embryo
V115
Head
1722 super_229:15835-15952 - 50.74
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTACAATTATGTTGAAAATTTATGTTGAAAAAAAATACTTTTATTTGTGCACTAATGCTCAAC--AATTTCATTATTTAT--TATTATTTCATTTAATTTCATAAAAAAA-TAATAATTTTA
SizeHit CountTotal NormV113
Male body
V114
Embryo
V115
Head
........TATGTTGAAAATTTATGTTGAAAAAA.........................................................................................2611.001.000.000.00
.....................TGTxTTAAAAAAAAATACT...................................................................................1811.000.001.000.00
........TATGTTGAAAATTTATGTTGAA.............................................................................................2211.001.000.000.00
680 super_140:39647-39760 + 50.39
TTTATACA-----TTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGT-ATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTATACAAGAAATATAATAATAATAATAATAATAA-TAATAA----TAATAATAATAAT---AATAATAATAATAATAATAATAATAATAATATTTCATTTTTTTTTACTTTT-------TATTTTTT
SizeHit CountTotal NormV113
Male body
V114
Embryo
V115
Head
..............................................................................................TTTCATTTCTTTTTAGTTTT-------T.......2121.500.001.500.00
.............................................................................TTATAAGAATAATAATATT.................................1940.750.000.750.00
....................ATAATAATGATAATAA-GAA.........................................................................................19300.030.000.030.00
..........................................................AT---AATAATGATAATAAGAA.................................................19300.030.000.030.00
................................................................ATAATAATGATAATAAGAA..............................................19300.030.000.030.00
.......................................ATAA----TAATGATAATAAG---AA................................................................19300.030.000.030.00
..........................................A----TAATAATGATAAT---AAGAA.............................................................19300.030.000.030.00
.............TATAAGAATAATAATATT..................................................................................................1890.110.000.110.00
.............................ATAATAA-TGATAA----TAAGAA............................................................................19300.030.000.030.00
..............................................................................TATAAGAATAATAATATT.................................1890.110.000.110.00
.......................................................ATAAT---AATGATAATAAGAA....................................................19300.030.000.030.00
...................................................................ATAATAATGATAATAAGAA...........................................19300.030.000.030.00
..........................ATAATAATGA-TAATAA----GAA...............................................................................19300.030.000.030.00
.........................................................................ATAATAATGATAATAAGAA.....................................19300.030.000.030.00
.................................................ATAATAATGAT---AATAAGAA..........................................................19300.030.000.030.00
................................ATAA-TAATGA----TAATAAGAA.........................................................................19300.030.000.030.00
...................................A-TAATAA----TGATAATAAGAA......................................................................19300.030.000.030.00
.................ATAATAATGATAATAAGAA-............................................................................................19300.030.000.030.00
.......................ATAATAATGATAA-TAAGAA----..................................................................................19300.030.000.030.00
.............................................................................TTATAAGAATAATAATAT..................................1850.200.000.200.00
..............ATAATAATGATAATAAGAA................................................................................................19300.030.000.030.00
......................................................................ATAATAATGATAATAAGAA........................................19300.030.000.030.00
..........AAATATAATAATTATAAAAAT..................................................................................................2130.330.000.330.00
....................................................ATAATAAT---GATAATAAGAA.......................................................19300.030.000.030.00
433 super_41:17990-18110 + 50.38
TTTATACATTTGTTTA-----TAATGCACATAATAAATGCCAAC--CATTCATCATGAAATTATAAATAGTATCATTTCA---AGATGCATGGTAAGGCTTTATTTTGTT-TTGCAA-TCAAAGACATCTTTCTT
AA--CCCATTTACTTAACGACTTACGGGTATAAAAACTGGCACCGGGATTTATTTCAA-CTTTCCATTAATATCCTATTTATAAAAT----------GTTCTCTTT-ATTCTTTTATTCTCAAGAAAAAATTGTC
SizeHit CountTotal NormV113
Male body
V114
Embryo
V115
Head
1513 super_59:15946-16064 - 50.35
TTTATACATTTGT--TTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
ATTATATCATTATTATTATTATGACCAAAATCAATACAAAAAGGTTATTAAGC-----TAAGTTTTTTAATTCTCTGAAACATGTCGAGGTGAAA-TTCGAATGTCATCAGGATGAATATTGATT
SizeHit CountTotal NormV113
Male body
V114
Embryo
V115
Head
...................................................................................GTAGAGGTGAAA-TTCGTA.......................1818.001.000.007.00
.................................................................................GTGTAGAGGTGAAA-TTCG.........................1812.000.000.002.00
..................................................................................TGTAGAGGTGAAA-TTCGT........................1811.000.000.001.00
..................................................................................TGTAGAGGTGAAA-TTCGTA.......................1911.001.000.000.00
348 super_30:362418-362527 + 50.32
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACC--ATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTAAAATGCAC---------------ATTCAACTACAGAAATATTTCATTTGGGACGATTATTAGTAACATTTACAAAAATGTAATAAAATTATATATCTTGTTTAGATTAAGGTAATCCCCGTT
SizeHit CountTotal NormV113
Male body
V114
Embryo
V115
Head
.....................................GAAATATCTCAGTTGGGA......................................................................1819.000.000.009.00
.....................................GAAATAGTTCAGTTGGGA......................................................................1811.000.000.001.00
.....................................GAAATAGCTCATTTGGGA......................................................................1811.000.000.001.00
1938 super_10999:873-997 - 49.84
TTTATACATTTGTTTATAATGC-----ACATAATAAATGCCAACCATTCATCATGAAATTATAAAT-------------AGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTG------CAATCAAAGACATCTTTCTT
TTGATATCGGAGTTTTTAAAATCTTAAATTTGATGAAAGTCAGTTTTTCT-CTTAA--TTTTAAATGAACCAATATGATTTTATTATTACACAATACT-------------------TTTACATGACTAAAAGCAGACAATTTTTTT
SizeHit CountTotal NormV113
Male body
V114
Embryo
V115
Head


droYak2 - 1081 hits found

Lastz ID Coordinate Normalized Identity % Sequence RNAfold UNAfold
7020 chr2L_random:3663454-3663574 - 56.0
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACC--ATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTAGCCAAGTTAATTTGGTAAAAACAAAAACCAGAAACCGGCTACACGATGAAACGCTAAATGC---CATTTTAGCAG-TCAGGTAATTATATATTTATTTTTAAATTTAAACCCATTTTTTAT
SizeHit CountTotal NormV046
Embryo
V052
Head
V120
Male body
V058
Head
M026
Head
....................................................................................................................GTTTTTTAT1880.130.000.000.000.000.13
360 chr2h_random:3201352-3201465 + 55.23
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGT------ATCATTTCAAGA-TGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACAT--CTTTCTT
ACAACACACA--------------AAAATATATGGCAGCATTTCAAATTGAAG--AAAAACAGCCTTAAAAACATTGCAAGAATGTTTGG--GGGACTTAGTTTGAGCTGAAAACAAACGTTTGCTTTTATT
SizeHit CountTotal NormV046
Embryo
V052
Head
V120
Male body
V058
Head
M026
Head
....................................................................................GTTTGG--GGGCATTAGT..............................1650.200.000.000.000.200.00
....................................................................................GTTTGG--GGGCATTAGTTT............................1840.250.000.250.000.000.00
...................................................................................TGTTTGG--GGGCATTAGT..............................1740.250.000.000.000.250.00
9918 chrU:7930310-7930431 - 55.1
TTTATACATTTGTTTATAATGCACATAATAAA---TGCC-AACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTT-----TGTTTTGCAA--TCAAAGACATCTTTCTT
TTTTCACAATTGTGTAAGCTATAACAAAAAAAAACTACTGAACCGATCATCTAGCA------------TTCATTTTAAGGAGCATAAAAATACATTTTTAGAACCTCTTTGACAAAAATTACGACATTTTTTTT
SizeHit CountTotal NormV046
Embryo
V052
Head
V120
Male body
V058
Head
M026
Head
2547 chr3R:4363752-4363870 + 54.21
TTTAT--ACATTTGTTTATAATG-CACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATG--GTAAGGCTTTATTTT----------------------GTTTTGCAATCAAAGACATCTTTCTT
TTTTGGTCAACTTTGTTATAATATCATCTAATAA------------------------------AATATTATTGAAAAATATATGTCGTAAC-TTTTATTTTTATAAAGGAAGTTTTTTTAATATTTGTTTGATAAAACATATTTTACAT
SizeHit CountTotal NormV046
Embryo
V052
Head
V120
Male body
V058
Head
M026
Head
..........................................................................AAAAAGATATGTCGTAAA-T........................................................1912.000.000.002.000.000.00
3083 chr4:792489-792607 + 53.93
TTTATACATTTGTTTATAATGCACATAATAAATGCC-AACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTAAACATATTTTCAT--TGTATTAAAGGACGGTCAAAATACTTATGCCGAAACAAAAAATCATCATATTTCATTAAGTTGTTTATATCTT---TTTAAGTTTCAATAAAAAAACTTTCGTGT
SizeHit CountTotal NormV046
Embryo
V052
Head
V120
Male body
V058
Head
M026
Head
6228 chr2L:5904635-5904750 - 53.78
TTTATACATTTGTTTATAATGCACATAATAAATGC-CAACCATTCATCATGAAAT-TATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
ATTTAATTATAGGGTACAAGCGA--TCATAGACGCGCATCTATCCATCTTCAAGTACATTTTTACTTCCTTCTCAAAAAACAAGTCATGAGT--ATTTTG--GTGCAAC---TGACAATTAGTTT
SizeHit CountTotal NormV046
Embryo
V052
Head
V120
Male body
V058
Head
M026
Head
...........................................................TTTTACTTCCTTCTCAAAAAGCC...........................................2311.000.000.000.001.000.00
8122 chr3L_random:4386397-4386518 - 53.65
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTAT-----AAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTT---TCTT
T---------TGTTTATAGTGCCCACCATGGAAAGCATCCACTCGTCCTCACAGTATATTCCAAACTGTGGAGATGAAATGTAAATATTGTTACTTTATTAGTTATTACTAATAATAACTTATTAGGTCTC
SizeHit CountTotal NormV046
Embryo
V052
Head
V120
Male body
V058
Head
M026
Head
8621 chr3R:7068188-7068311 - 53.63
TTTATACATTTGT----TTATAATGCA-CAT----------------------------AATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
ATTATACATTTTGTGCGTTATTATGTAGTATGATACATATTTGCTTATCAGTAAAAAAGAAGCAAGGTTAAACAGGAAACAG---------------AACGTTTAAATCTGCAA-----------------GTGTGTAATAGAAGAAATATTTCTT
SizeHit CountTotal NormV046
Embryo
V052
Head
V120
Male body
V058
Head
M026
Head
..........................................GCTTATCAGAAAAAAAGT................................................................................................18236.000.000.000.000.0036.00
...................................................................TTAAACAxGAAACTG---------------AACGTT.....................................................2011.000.000.001.000.000.00
.................................................................................................................A-----------------GTGTGTAGTTGAAGAAA........1811.000.000.000.001.000.00
9189 chr4:1217778-1217898 - 53.12
TTTATACA--TTTGTTTATAATGCACATAATAAA-TGCCAACC-ATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
ATTCTGCAACTTCGGTTTTATTGCTTATAAAAATGTTTCTACAAAGCCATCA--AAATTTAAATTAATATATTATTGGATTTCACTTTAAAAATTTTTCCTAGGTTTTTGTTTAAAA----TTTTTT
SizeHit CountTotal NormV046
Embryo
V052
Head
V120
Male body
V058
Head
M026
Head
3874 chrU:8474994-8475111 + 53.05
TTTATACATTTGTTTATAATGCACATAATAAATGC-CAACCATTCATCATGAAATTATAAATAGTATCATTTCAAG-ATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTATAAATAGATATA-AATATTTATATTAAATATTTGAATATTTAATATTTAATTAATAT-----TTATTATAAATTAGTATATTAATAT-ATATATATTTATACAAGTATATATATTATATTT
SizeHit CountTotal NormV046
Embryo
V052
Head
V120
Male body
V058
Head
M026
Head
...........................................................AT-----TTATTATTAATTAGTGTA.........................................2013.000.001.002.000.000.00
..........................................TGTAATATTTAAATAATAT-----T..........................................................2013.000.000.003.000.000.00
..................................................................TTATTATTAATTAGTGTA.........................................1820.500.000.000.000.500.00
...........................................................AT-----TTATTATTAATTAGTGT..........................................1911.000.000.001.000.000.00
.............................................................................................TATATxTGTATAAAAGTATA............1930.330.000.000.330.000.00
3350 chrU:1626947-1627075 + 52.81
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATG---------AAATTATAAATAGTATCATTTCAAGATGCATGGTAAGG-CTTTATTTTGTTTTGC-------AATCAAAGACATCTTTCTT
-----ACATTTCTTTATAA----CATCAATAATGTCAGCGA--CATCATGTCGCCCCACAAGTTTTCGATAGGGAGATTGTGCTGTGCATGGCATTACGTCTATTTTATTTTGGGTGAACCAATTCTTAACCGCTTTGCT
SizeHit CountTotal NormV046
Embryo
V052
Head
V120
Male body
V058
Head
M026
Head
...........................................CATGATGTCGCACCACAAG..............................................................................1920.500.000.000.000.000.50
.........................................................................................................CTATTTGGGGTGAACCAATT...............2020.500.500.000.000.000.00
.....................................................................................................TATTTTTTTTTGGGTGAA.....................1820.500.000.000.000.000.50
3351 chrU:1628507-1628635 + 52.81
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATG---------AAATTATAAATAGTATCATTTCAAGATGCATGGTAAGG-CTTTATTTTGTTTTGC-------AATCAAAGACATCTTTCTT
-----ACATTTCTTTATAA----CATCAATAATGTCAGCGA--CATCATGTCGCCCCACAAGTTTTCGATAGGGAGATTGTGCTGTGCATGGCATTACGTCTATTTTATTTTGGGTGAACCAATTCTTAACCGCTTTGCT
SizeHit CountTotal NormV046
Embryo
V052
Head
V120
Male body
V058
Head
M026
Head
...........................................CATGATGTCGCACCACAAG..............................................................................1920.500.000.000.000.000.50
.........................................................................................................CTATTTGGGGTGAACCAATT...............2020.500.500.000.000.000.00
.....................................................................................................TATTTTTTTTTGGGTGAA.....................1820.500.000.000.000.000.50
7543 chr3h:29019-29139 - 52.76
TTTATACATT--TGT--TTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TATAAGTATATTAAATTAAATAATATACATATTAAAAAATATATATATATTATATGAATACAGGAAAAAATATATAAGTATATATAA---ATATTTAT--CATATTATAATAAAGGA-AAAATTAAT
SizeHit CountTotal NormV046
Embryo
V052
Head
V120
Male body
V058
Head
M026
Head
.....................................................ATGAATACAGGAAAAAATATATAAGT................................................26110.000.000.0010.000.000.00
...................................................ATATGAATACAGGAAAAAATATATAAGT................................................2818.000.000.008.000.000.00
...................................................ATATGAATACAGGAAAAAAT........................................................2017.000.000.007.000.000.00
....................................................TATGAATACAGGAAAAAATATATAAGT................................................2713.000.000.003.000.000.00
...................................................ATATGAATACAGGAAAAAATAT......................................................2212.000.000.002.000.000.00
................................................ATTATATGAATACAGGAAAAAAT........................................................2312.000.000.002.000.000.00
.............................................................................................................ATAAAGGA-AAAATGAAT1921.000.000.000.500.500.00
..........................................................TACAGGAAAAAATATATAAGT................................................2112.000.000.002.000.000.00
.........................................................ATACAGGAAAAAATATATAAGT................................................2212.000.000.002.000.000.00
..................................................TATATGAATACAGGAAAAAAT........................................................2112.000.000.002.000.000.00
.......................................................GAATACAGGAAAAAATATATAAGT................................................2412.000.000.002.000.000.00
...................................................ATATGAATAAAGGAAAAAAT........................................................2020.500.000.000.500.000.00
...................................................ATATGAATACAGGAAAAAATA.......................................................2111.000.000.001.000.000.00
.....................................................ATGAATACAGGAGAAAATATA.....................................................2111.000.000.001.000.000.00
................................................ATTATATGAATACAGGAAAAAATAT......................................................2511.000.000.001.000.000.00
............................................................CAGGAAAAAATATATAAGT................................................1911.000.000.001.000.000.00
.................................................TTATATGAATACAGGAAAAAATATATAAG.................................................2911.000.000.001.000.000.00
.....................................................ATGAATACAGGAAAAAAT........................................................1811.001.000.000.000.000.00
..........................................ATATATATTATATGAATACAGGAA.............................................................2411.000.000.001.000.000.00
................................................ATTATATGAATACAGGAAAAA..........................................................2111.000.000.001.000.000.00
....................................................TATGAATACAGGAAAAAATC.......................................................2011.000.000.000.001.000.00
.........................................................ATACAGGAAAAAATATATAAGTATAT............................................2611.000.000.001.000.000.00
..........................................................TACAGGAAAAAATATATAAGTATA.............................................2411.000.000.001.000.000.00
.......................................................GAATACAGGAAACAATATATAAGT................................................2411.000.000.001.000.000.00
.....................................................ATGAATACAGGAAAAAATAT......................................................2011.000.000.001.000.000.00
................................................ATTATATGAATACAGGAAAA...........................................................2011.000.000.001.000.000.00
......................................................TGAATACAGGAAAAAATATATAAGT................................................2511.000.000.001.000.000.00
7841 chr3L:22007186-22007303 - 52.57
TTTATACATTTGTT--TATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGAT----------GCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
AATTAATATTTGTTGTTATATTGCAAACAATGTATAAATA--------------TTTATATATTGAATCTGTTAAACAACAGTATTTAGGTATACTAATATCATATTGTGTACCCTAGT---TGTCAAGTTTCTA
SizeHit CountTotal NormV046
Embryo
V052
Head
V120
Male body
V058
Head
M026
Head
11966 chrX_random:1469046-1469168 - 52.52
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAAT--AGTATCATTTCAAGATGCA--TGGTAAGG--CTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TCTATTAAAATTTTTATTATGCA-GCACTAAAGATTGGTCA---ATTATGAATGCGTACATTAAATATTATTTTAATATTCCGACTTTCAGAAATTGCGTTTTGGCCAGAAAAAGGGGTCAAAT--TTC
SizeHit CountTotal NormV046
Embryo
V052
Head
V120
Male body
V058
Head
M026
Head
............................TAAAGATTGGTCG---ATTATGAATGCGT........................................................................2628.000.000.008.000.000.00
............................TAAAGATTGGTCG---ATTATGAATGCGTA.......................................................................2723.500.000.003.500.000.00
............................TAAAGATTGGTCA---ATTATGAATGCGT........................................................................2622.500.000.002.500.000.00
............................TAAAGATTGGTCG---ATTATGAATGCG.........................................................................2522.000.000.001.500.000.50
............................TAAAGATTGGTCG---ATTATGAAT............................................................................2221.000.000.001.000.000.00
............................TAAAGATTGGTCA---ATTATGAAT............................................................................2221.000.000.001.000.000.00
............................TAAAGATTGGTCG---ATTATGAATGC..........................................................................2421.000.000.001.000.000.00
........................................A---ATTATGAATGCGTACACTAA.................................................................2120.500.000.000.500.000.00
............................TAAAGATTGGTCA---ATTATGAATACGT........................................................................2620.500.000.000.500.000.00
............................TAAAGATTGGTCA---ATTATGGATGCGT........................................................................2620.500.000.000.500.000.00
............................TAAAGATTGGTCA---ATTATGAATGCGTA.......................................................................2720.500.000.000.500.000.00
...................................TGGTCA---ATTATGGATGCGTGC......................................................................2120.500.500.000.000.000.00
............................TAAAGATTGGTCA---ATTATGAATGGC.........................................................................2511.000.000.001.000.000.00
............................TAAAGATTGGTCA---ATTATGAATGAGT........................................................................2620.500.000.000.500.000.00
2045 chr3L:23665781-23665893 + 52.3
TTTATACATTTGTTTATAATGCACATAATAAATGCCA--ACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTA-TTTTGTTTTGCAATCAAAGACATCTTTCTT
TGTATACAAATGTATGTGGT-CTCATATAAAACGACATTACCATTAATGA--GTACAATGAGTAATACCATTAATGAGTACACT----------ACTGCTATTTGACAATTAAATATGCTTTATTT
SizeHit CountTotal NormV046
Embryo
V052
Head
V120
Male body
V058
Head
M026
Head
.............................................AATGA--GTACAATxxGTAATAC..........................................................1911.000.000.001.000.000.00
3219 chrU:239331-239452 + 52.28
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTC-ATCA--------------------------------------------TGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
GTTATG-ATTTGCTTATA-TGTATATCTATTTTGTCTTCTATTTCATTGTTTTAAATTAATGTTTATTTAAATTTAAAATTAATTCACCCGTGTGAATTTACAGA--------------------------------------------TTTCCTACCCATTGTTTTT
SizeHit CountTotal NormV046
Embryo
V052
Head
V120
Male body
V058
Head
M026
Head
4765 chrU:20058729-20058848 + 52.24
TTTATACATTTGTTTATAATGCACATAA-----TAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGG---TAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTTTATACTTAAAAATAATAATA---AAAAGGCAAATCCATGCATGTTATAAAAAAAATATAGAAAATACCATTTTTTTGTGCTTAAAAGTAAACTTT----TGATTTG----GCTAAGATTTCGTTCCG
SizeHit CountTotal NormV046
Embryo
V052
Head
V120
Male body
V058
Head
M026
Head
................................................................................ATGCGTAAAAGTAAACTTT----............................1911.000.000.000.001.000.00
7360 chr2R:2958885-2959002 - 52.22
TTTATACATTT----GTTTATAATGCACATAATAAATGCCAACC-ATTCATCATGAAATTATAAATAGTATC--ATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTTTGCGTTTAGATGTATCTAATGTCTTAACAAAAAACAAACTTATGTATTATTAAATAATATATTATGTATATTATTAAATAGTA------------TTTATACTTAATTAACACAAATCTATTTCTA
SizeHit CountTotal NormV046
Embryo
V052
Head
V120
Male body
V058
Head
M026
Head
.....................................................................................TA------------TTTATAGCTAATTAACACA............21147.001.002.0038.006.000.00
......................................................................................A------------TTTATAGCTAATTAACACA............20222.500.501.5016.004.500.00
......................................................................................A------------TTTATAGCTAATTAACAC.............1925.000.001.500.003.000.50
.....................................................................................TA------------TTTATAGCTAATTAACAC.............2018.000.002.003.003.000.00
.....................................................................................TA------------TTTATAGCTAATTAACA..............1915.001.000.000.004.000.00
......................................................................................A------------TTTATAGCTAATTAACACAA...........2122.500.000.002.500.000.00
.....................................................................................TA------------TTTATAGCTAATTAACACAA...........2215.000.001.003.001.000.00
.....................................................................................TA------------TTTATATCTAATTAACACA............2111.000.001.000.000.000.00
.....................................................................................TA------------TTTATAGTTAATTAACGCA............2111.000.000.001.000.000.00
...TTGCGTTTTGATGTATCTAATGTCTTA....................................................................................................2720.500.000.000.500.000.00
...................................................................................................TTTATAGCTAATTAACAC.............1820.500.500.000.000.000.00
......................................................................................A------------TTTATAGATAATTAACAC.............1920.500.000.000.000.500.00
...................................................................................................TTTATAGCTAATTAACACA............1920.500.000.500.000.000.00
1170 chr2L_random:2676043-2676158 + 52.09
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAG---TATCATTTCAAGATGCATGGTAAGGCTTT-------------ATTTTGTTTTGCAATCAAAGACATCTTTCTT
ATTATACATTCATTTAAAA-----------------------TCATTACAAAGTCAGGGATTGAAAAACAAGCAGGAAAAATGTACCAAAGTTTCTGTTATTTTTGTAACTCTGTACTTTGTTCGAAAACGTGCTCTTC
SizeHit CountTotal NormV046
Embryo
V052
Head
V120
Male body
V058
Head
M026
Head
..........................................TCATTACAAAGTCAGGGATTGAAAAACA.....................................................................2850.400.000.000.400.000.00
.............................................TTACAAAGTCAGGGATTGAAAAACATGC..................................................................2850.200.000.000.200.000.00
..........................................TCATTACAAAGTCAGGGATTGAAAC........................................................................2550.200.000.000.200.000.00
...ATAGATTCATTTTAAA-----------------------TCAT.............................................................................................2080.130.000.000.000.130.00
..........................................TCATTACAAAGTCAGGGAGTGAAAAAA......................................................................2740.250.000.000.250.000.00
..........................................TCATTACAAAGTCAGGGATTGAAAAA.......................................................................2650.200.000.000.200.000.00
..........................................TCATTACAAAGTCAGGGATTGAAGAGC......................................................................2740.250.250.000.000.000.00
..........................................TCATTACAAAGTCAAGGATTGAAAA........................................................................2550.200.000.000.000.000.20
..........................................TCATTACAAAGCCAGGGACTGAAAAAC......................................................................2740.250.000.000.000.000.25
9207 chr4:1343552-1343672 - 52.07
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATT---TCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAAT---CAAAGACATCTTTCTT
TTTGAT--------TTAAAGTTTCTTGCGAAATTCCACTGTTCGATAAAAAAATTATTTGTTGCGTTATTGTATTATACTGTGTATTTAAAATATTTTGTGTTTAACCATACATAAAAAGATTTTAATT
SizeHit CountTotal NormV046
Embryo
V052
Head
V120
Male body
V058
Head
M026
Head


droEre2 - 393 hits found

Lastz ID Coordinate Normalized Identity % Sequence RNAfold UNAfold
2014 scaffold_4784:2237866-2237984 - 55.23
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATA--GTATCATTTCAAGATGC-ATGGTA-AGGCTT-TATTTT--GTTTTGCAATCAAAGACATCTTTCTT
TTTCCAAATTTG-----AATGCAGATTTTTA-----GACAATTGCTCCAGAAACATTTAGAGGTATGCCACTTCAAAATACGATAATTGAAGGTTGAATTATGGACTTTAGAACTTCAGCCTTCTT-TTT
SizeHit CountTotal NormV040
Embryo
V060
Head
V047
Embryo
V108
Head
.TTCTAAATTTG-----AATGCAGATTT......................................................................................................22450.040.000.000.000.04
......AATTTG-----AATGCAGATATTTA-----GA............................................................................................22160.060.060.000.000.00
...........................................GCACCAGAAACATTTAGAGGT..................................................................21300.030.000.000.000.03
..........................TTTTA-----GAGAATTGCTCCAGAAACATTT........................................................................27370.030.000.000.000.03
........................................ATTGCGGCAGAAACATTTAGAGG...................................................................23220.050.000.000.000.05
...........................................TCTTCAGAAACATTTAGAGGT..................................................................21100.100.000.000.000.10
....................................................................................................ATGGACTTTAGAACTTCCGTC.........2190.110.110.000.000.00
...............................................CAGAAACATTTAGAGGTATGCCACTT.........................................................26310.030.000.000.000.03
...........................................GCTTCAGAAACATTTAGAG....................................................................19230.040.040.000.000.00
..............................................CCAGAAACATTTAGAGGTATG...............................................................21300.030.000.000.000.03
................................................................ATGACACTTCAAAATCCGAT..............................................20330.030.000.000.000.03
......................................GAATTGCTCCAGAAACATTTAGAG....................................................................24180.060.060.000.000.00
..............................................TCAGAAACATTTAAAGGT..................................................................18260.040.000.000.000.04
.........................................TTGCGCCAGAAACATTTAGAGGT..................................................................23200.050.000.000.000.05
.........................TTTTTA-----GAGAATTGCTCCAGA...............................................................................21390.030.000.000.000.03
...........................................GCACCAGAAAAATTTAGAGGT..................................................................21180.060.000.000.000.06
................................................AGAAACATTTAGAGGTATGC..............................................................20350.030.000.000.000.03
...................................................................................................TATGGACTTTAGAACTTTC............1980.130.000.000.000.13
........................................ATTGCTCCAGAAACATTTAGAGGT..................................................................24210.050.050.000.000.00
...........................................GCGCCAGAAACATTTAGAGGT..................................................................21200.050.000.000.000.05
.................................................................................................GTTATGGACTTTAGAACTTCAGC..........23210.050.000.000.000.05
.....................................AGAATTGCTCCAGAAACATTTAGAG....................................................................25180.060.000.000.000.06
.....................................................CATTCAGAGATATGCCACTTCAAA.....................................................24210.050.050.000.000.00
........................................ATGGCACCAGAAACATTTAGAGGTA.................................................................25180.060.000.000.000.06
..................ATGCAGATGTTTA-----GAGAATTGCT....................................................................................23250.040.000.000.000.04
.........................TTTTTA-----GAGAATTGCTCC..................................................................................18420.020.000.000.000.02
........................................ATTGCTCAAGAAACATTTAGAGGTAT................................................................26240.040.000.000.000.04
........................................ATTCCACCAGAAACATTTAGAG....................................................................22210.050.000.000.000.05
..........................................TGCGCCAGAAACATTTAGAGGT..................................................................22200.050.000.000.000.05
........................................ATTGTGCCAGAAACATTTAGA.....................................................................21280.040.000.000.000.04
........................................ATTGCGCCAGAAACATTTAGAGG...................................................................23200.050.050.000.000.00
...........................................GCGCCAGAAACATTTATAGGT..................................................................21220.050.050.000.000.00
....................................................................................................ATGGTCTTTAGAACTTCAGTC.........2180.130.000.000.000.13
.....................CAGATGTTTA-----GAGAATTGCTC...................................................................................21250.040.000.000.000.04
.........................TGTTTA-----GAGAATTGCTCCAG................................................................................20430.020.000.020.000.00
........................................ATTGCTCCAGAAACATTTAGAGGTAT................................................................26210.050.000.000.000.05
.....................................................CATTTAGAGGTATGCCACGTC........................................................21370.030.000.000.000.03
......................................GAATTGCTCCAGAAACATTTAGAGGT..................................................................26180.060.000.000.000.06
.........TTG-----AATGCAGATTTTAA-----G.............................................................................................18150.070.000.000.000.07
.....................CAGATGTTTA-----GAGAATTGCT....................................................................................20260.040.000.000.000.04
........................................ATTGCGCCAGAAACATTTAGA.....................................................................21270.040.000.000.000.04
.............................................GCCAGAAACATTTAGAGGT..................................................................19240.040.000.000.000.04
............................................CTCCAGAAACATTTAGAGG...................................................................19240.040.000.000.000.04
.................AATGCAGATTTTAA-----GATAATT.......................................................................................21200.050.000.000.000.05
..................ATGCAGATTTTTG-----GAGAATTG......................................................................................21490.020.020.000.000.00
................................................................................................AGATATGGACTTTAGAAC................18140.070.000.000.000.07
......................................................ATTTAGAGGTATGCCACTTCAAA.....................................................23360.030.000.000.000.03
..........................................TGCTCCAGAAACATTTAGAG....................................................................20210.050.000.000.000.05
.................................................................................................GTTATGGACCTTAGAACTTCA............21120.080.000.000.000.08
...................................................................................................TATGGACCTTAGAACTTCA............19120.080.000.000.000.08
...........................................GCGCCATAAACATTTAGAG....................................................................19250.040.000.000.000.04
..........................................TGCGCCAGAAACATTTATA.....................................................................19490.020.000.000.000.02
.............................................TCCACAAACATTTAGAGGTATGC..............................................................23120.080.000.000.000.08
.........................TTTGTA-----GGCAATTGCTCCA.................................................................................1911.001.000.000.000.00
.........................................TTGCGCCAGAAACATTTAGAG....................................................................21220.050.000.000.000.05
..........................ATTTA-----GAGAATTGCTCCAGAA..............................................................................21420.020.000.000.000.02
..................................................................................................TTATGGAGTTTAGAACTT..............18190.050.000.000.000.05
.......................................AATTGCGCCAGAAACATTTAGAG....................................................................23220.050.000.000.000.05
.........TTG-----AATGCAGATGTTTA-----GA............................................................................................19200.050.000.000.000.05
.........................................TTGCTCCAGAAACATTTAGAG....................................................................21210.050.000.000.000.05
...........................................GCGCCAGAAACATTTAGA.....................................................................18270.040.000.000.000.04
...............................................CAGAAACATTTAGAGGTATG...............................................................20320.030.000.000.000.03
..........................................TGCGCCAGAAACATTTAGAG....................................................................20220.050.000.000.000.05
..........................................TGCGCCAGAAACATTTAGAGG...................................................................21200.050.000.000.000.05
..........................TTTTA-----GAGAATTGCTTCAGAAAC............................................................................23400.030.000.000.000.03
....................................................................................................ATGGACCTTAGAACTTCAGTC.........2190.110.110.000.000.00
.........................................................................................................GTTTAGAACTTCAGCCTT.......18100.100.000.000.000.10
......................................................ATTTAGAGGTATGCCACTT.........................................................19400.030.000.000.000.03
..........................................TGCGCCAGAAACATTTAGAGGTATGCC.............................................................27200.050.000.000.000.05
...........................................GATCCAGAAACATTTAGAGGTATGCCA............................................................2770.140.000.000.000.14
........................................ATTGAGCCAGAAACATTTAGA.....................................................................21280.040.000.000.000.04
..................................................AAAAATTTAGAGGTAAGCC.............................................................19310.030.000.000.000.03
........................................................TAAGAGGTATGCCACTTCAAA.....................................................21360.030.000.000.000.03
2779 scaffold_4929:19790054-19790173 - 55.01
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTC------ATCATGAAATTATAAATAGTATCATTTCAAG------ATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTACCCATTTGTTG--GATAGAAATAATAGATA--AATCACTCTAACTAGGTATTAAAATATGCAT--------TCCAATGCCAGTTCGGGTTTCAAAA-GTTATT--CTTCTTTATTCGAACTGATTTTTGAG
SizeHit CountTotal NormV040
Embryo
V060
Head
V047
Embryo
V108
Head
.................................................................................................AGA-GTTATT--CTTCTTAAT.................18116.001.000.000.0015.00
................................................................................................AAGA-GTTATT--CTTCTTAAT.................19111.001.001.000.009.00
................................................................................................AAGA-GTTATT--CTTCTTAA..................1816.000.000.000.006.00
.................................................................................................ATA-GTTATT--CTTCTTAAT.................1811.000.000.000.001.00
......................................................................................................CTATG--CTTCTTTATTCGAA............1911.001.000.000.000.00
3024 scaffold_4929:25865519-25865633 - 54.86
TTTATACATTTG-TTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAG--TATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAG---ACATCTTTCTT
CATT------TATCTTATGATAC-CAAAACTTGTGCCG-CCGTCCCTTAT---ATTTTGTATAGTTTATTACTCCAGAA--CTAAGAAAGATA-TTTTTTTTTTTGCATTGATAAACTACACCATATCT
SizeHit CountTotal NormV040
Embryo
V060
Head
V047
Embryo
V108
Head
1624 scaffold_4512:1003020-1003145 - 54.25
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATT----------ATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TATGCATATTTTCATA------GTAAAATGAATTCGAATGAATTAAAATGAAATTTAGTACCATAAAAAGAAATATTATCAAAGGAAATATATTAGAGTATTTTTTTGT-ATACAATTATATATATTTCATGT
SizeHit CountTotal NormV040
Embryo
V060
Head
V047
Embryo
V108
Head
.........................................ATTAAAATGAAAATGAGT..........................................................................1812.000.000.000.002.00
....................................AATGAATGAAAACGAAAT...............................................................................1820.500.000.000.000.50
1223 scaffold_4929:19714830-19714949 + 52.74
TTTAT--ACATTTGTTTATAATGCACATAATAAATGCCAACCAT-TCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTAATTCCAAATGAATAAATAATAAAAAACAATTTTCGAGCTTCCTATTTAGCAATTCAATTTATCCTAATTTATAAATGGATAG-AAGTCTTGATTGCTTCTTTTCC-----TGCATCTATATT
SizeHit CountTotal NormV040
Embryo
V060
Head
V047
Embryo
V108
Head
.....................AATAAAATAxAATTTTCGAGC....................................................................................2011.001.000.000.000.00
2864 scaffold_4929:21127789-21127908 - 52.24
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAAT------AGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTT--TGCAATCAAAGACATCTTTCTT
TGTATATATACATATA---TACATATAATATAT---AAACGTATATAATAAAATTTAAAAAAATCCAAATAAAATTTCAAAA-GTGTGGGGATGTTATGGGCTACTTTTTGACGTTAG----AGCGGACGT
SizeHit CountTotal NormV040
Embryo
V060
Head
V047
Embryo
V108
Head
.............................................................................................TTTATGGGCxACTTTTTGA...................1811.000.000.000.001.00
1412 scaffold_4929:24371106-24371226 + 52.24
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCAT----TCAT-CATGAAATTATAAATAGTATCATTTCAAGATGCAT----GGTAAGGCTTTA----TTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTAAATATTTTTTA-----ACATGTAGGAATTGCCACTCAAGTTTTCATTTATGGGATAGAATGCAG--TCCACTTGCAATGCTTAAAAAGTAAAACTTATACAAGTTTGT--------TTAAAAAATCGATTTT
SizeHit CountTotal NormV040
Embryo
V060
Head
V047
Embryo
V108
Head
.......ATTTATTT-----ACATGTAGGA..........................................................................................................1815.001.000.000.004.00
2906 scaffold_4929:22501480-22501602 - 52.21
TTTATACATTTGTTTATAATGC-ACATAATAAA-----TGCCAACCATTCATCATGAAATTATAAATAG---TATCATTTCAAGATGCATGGT--AAGG-CTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTTTAATTAAGTTTTTAACATTACCTAGCGAACAATGTGTCAAATAC----------GTTGGAAATCGGATTTTTATTTTAAAATCTATGGCTTGAGGTCTCTGTGTTACTTCTTGATTAAT--TTTCTTATTA
SizeHit CountTotal NormV040
Embryo
V060
Head
V047
Embryo
V108
Head
.............................................................................................................................TTTGTTATTA1830.330.330.000.000.00
97 scaffold_4512:317479-317596 + 51.76
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCA----TTTCAAGATGCATGGTAAGGC----TTTATTTTGTT--TTGCAATCAAAGACATCTTTCTT
TATATTAATATATATATATATTATATTATATATTATATTA---TATATT------------AATATTATATACATATATATGAATAGAAAAGAAATCATAATTTTGTTGTTAGTGACCATAAACAAATAAATT
SizeHit CountTotal NormV040
Embryo
V060
Head
V047
Embryo
V108
Head
.................................................................................................AxATTTTTGGTGTTAGTGA.................1813.000.000.000.003.00
..................................................................................................AATTTTTGTTGTTAGTGA.................1811.000.000.000.001.00
..................................................................................................AAATTGTGTTGTTAGTGA.................1811.000.000.000.001.00
...............................ATTATATCA---TCTATT------------AAT.....................................................................1811.001.000.000.000.00
1222 scaffold_4929:19710848-19710973 + 51.71
TTTATACATTTGTTTA----TAATGCACATAATAAATGCCAACCATTCATCATGAAATT--ATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTT-ATTTTGTTTTGCAATCAAAGACATCTT-TCTT
ATTGTATATGTTT-TATGAGCGGTGCACTAAACAAAGA----TCTATAAACATTGAAATAAATGGATCTTGCTTTCGCAAGCCGCAGTCTAATACGCTTGCGAGTTTTTCCAATTAAAAATACTCTTAAAA
SizeHit CountTotal NormV040
Embryo
V060
Head
V047
Embryo
V108
Head
............T-TATGAGCGGTGCACTAAACAA................................................................................................2211.000.000.000.001.00
..............................................................................................................................TAAAA1820.500.000.000.000.50
278 scaffold_4770:162071-162190 + 51.6
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCA----------------AAGACATCTTTCTT
T----------------AGTTCAAAGAAAATGCTCCAGCCATTGATCCTGA--TTAAGAATATATATAC-TTTATATGGTCGGAAACGTTTCCTTCTGCCTGTTACATACTTTTAACCCTTTTTTTATACCCCTTTTTT
SizeHit CountTotal NormV040
Embryo
V060
Head
V047
Embryo
V108
Head
..............................................................TATAAAC-TTTAxATGGTCGG........................................................1990.110.110.000.000.00
...................................................................AC-TTTATATGGTCGGAAAC....................................................19110.090.000.000.000.09
............................................................TATTTATAC-TTTATAGGGT...........................................................1990.110.000.000.000.11
...............................................................ATATAC-TATATGTGGTCG.........................................................18100.100.000.000.000.10
..................GTTCAAAGAAAATGTTCCA......................................................................................................1911.000.000.000.001.00
.................................................................ATAC-TTTATATGGTCGGA.......................................................18150.070.000.000.000.07
.................................................................ATAC-TTTATATGGTCGGAAAC....................................................21100.100.000.000.000.10
2146 scaffold_4784:22486215-22486336 - 51.54
TTTATACATTT-GT---TTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTGAAAGTTTTGTAAAATATTTTCCACACAGTAACCGAGAATGTTCAGTAACGTAATTAAAGTACATAGCATTTTTA-----GTGATAAGAATACATACTGTTTTGTAATTTCATCATCCTCATTT
SizeHit CountTotal NormV040
Embryo
V060
Head
V047
Embryo
V108
Head
197 scaffold_4690:9224433-9224556 + 51.4
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACC--------ATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
ATAATAAAATGG----CCATGGATAGAGTACTCCCCCACCTTCAATTGATTCGTCACCAATTTATTCATA-TGCCACTTCAAAATCC--GATTAAGATGAGTTGAGTTATGGAGTTCAGAACTTCAGCCTT
SizeHit CountTotal NormV040
Embryo
V060
Head
V047
Embryo
V108
Head
...............................................................................................GATAAGTTGAGTTATGGA..................18280.360.070.000.000.29
.........................................................................................GATTAAGATAAGTTGAGT........................18290.100.030.000.000.07
.........................................................................................GATTAAGATAAGTTGAGTTATGGA..................24250.120.000.000.000.12
.........................................................................................GATTAAGATAAGTTGAGTTAT.....................21270.070.000.040.000.04
.............................................................................................AAGATAAGTTGAGTTATGGA..................20260.080.000.040.000.04
...................................................................................ATCC--GAATAAGATAAGTTGAGTT.......................23210.100.000.000.000.10
..........................................................................................ATTAAGATAAGTTGAGTTATG....................21270.070.000.000.000.07
..............................................................................................AGATAAGTTGAGTTATGGAGT................21180.060.000.000.000.06
..........................................................................................ATTAAGATAAGTTGAGTTATGG...................22260.040.000.000.000.04
...................................................................................ATCC--GATCAAGATAAGTTGAGTTATG....................26220.050.000.000.000.05
.............................................................................................AAGATAAGTTGAGTTATGGAGT................22180.060.000.000.000.06
...................................................................................................AGTTGAGTTATGGAGTTTAGA...........21210.050.000.000.000.05
......................................................................................................TGAGTTATGTAGTTGAGA...........1850.200.000.000.000.20
..........................................................................................ATTAAGATAAGTTGAGTTATGGC..................23260.040.000.040.000.00
...........................................................................................TAAAGATTAGTTGAGTTATGG...................21220.050.000.000.000.05
.............................................................................................AAGATAAGTGGAGTTATGGAG.................21230.040.000.000.000.04
......................................................................................C--GATTAAGATAAGTTGAGTTATGGA..................25230.040.000.000.000.04
.................................................................................................................GTTTAGAACTTCAGCCTT18100.100.000.000.000.10
...................................................................................ATCC--GATTAAGATTAGTTGCGTT.......................23160.060.000.000.000.06
..........................................................................................ATGAAGATAAGTTGAGTTAT.....................20280.040.000.000.000.04
...........................................................................................TTAAGATAAGTTGAGTTATGGA..................22250.040.000.000.000.04
............................................................................................TAAGATAAGCTGAGTTATG....................19270.040.040.000.000.00
..................................................................................................AAGTTGAGTTATGGAGTTTAGA...........22230.040.040.000.000.00
.........................................................................................GATTAAGATAAGTTGAGTTATTGA..................24250.040.000.000.000.04
............................................................................................TAAGATAAGTGGAGTTATGGA..................21250.040.000.000.000.04
.......................................................................................................GAGTTATGGAGTTGAGAACTTCAA....2430.330.000.000.000.33
.................................................................................................TTAGTTGAGTTATGGAGT................18150.070.070.000.000.00
.............................................................................................AAGATGAGTTGAGTTTTGGA..................20160.060.000.000.000.06
.........................................................................................................GTTATGGACTTTAGAACTTCAGC...23210.050.000.000.000.05
....................................................................................................GTTGAGTTATGGTGTTTAG............19230.040.040.000.000.00
......................................................................................................TGAGTTATGGAGTTGAGAACTTCAGC...26110.090.000.000.000.09
................................................................................................ATAAGTTGAGTTATGGAGTTTAGA...........24220.050.000.000.000.05
...................................................................................ATCC--GATTAAGAGAAGTTGAGTTATGG...................27180.060.000.000.000.06
.................................................................................................TAAGTTGAGTTATGGAGT................18270.040.000.000.000.04
.........................................................................CCACTTCAAAATCC--GATTAA....................................20280.040.000.000.000.04
.................................................................................................................GTTTAGAACTTCAGCCAT1930.330.000.000.000.33
.........................................................................................................GTTATGGAGTTTAGAACGTC......20180.060.060.000.000.00
................................................................................................ATAAGTTGAGTTATGGAG.................18300.030.000.000.000.03
.....................................................................A-TGACACTTCAAAATCC--GAT.......................................20330.030.000.000.000.03
.............................................................................................AAGAGAAGTTGAGTTATGGA..................20270.040.040.000.000.00
...............................................................................................GATAAGTTGAGTTATGGAG.................19250.040.040.000.000.00
....................................................................................................GTTGAGTTATGGAGTTTAGA...........20220.050.000.000.000.05
..................................................................................................AAGTTGCGTTATGGAGTT...............18220.050.000.000.000.05
....................................................................................................GTTGAGTTATGGAGTTGAGAAC.........22190.050.000.000.000.05
.............................................................................................AAGATAAGTTGAGTTATGG...................19270.040.000.000.000.04
.........................................................................................GATTAAGATTATTTGAGTTATGGAGT................2680.130.000.000.000.13
...............................................................................................GATAAGTTGAGATATGGA..................18290.030.000.000.000.03
.........................................................................................................GTTATGGAGTTTAGAACTT.......19180.060.000.000.000.06
.............................................................................................AAGATTAGTTGAGTTATGGAC.................21250.040.000.000.000.04
.........................................................................................GATTAAGAGAAGTTGAGTTATGGAGT................26150.070.000.000.000.07
.....................................................................................CC--GATTAAGATAAGTTGAGTTATGG...................25210.050.000.000.000.05
...............................................................................................GATAAGTTGAGTTATGGAGTTGA.............23140.070.000.070.000.00
.................................................................................................TAAGTTGAGTTATGGAGTTGAGAACTT.......27110.090.000.000.000.09
.....................................................................................CC--GATTCAGATAAGTTGAGT........................20250.040.040.000.000.00
...................................................................................ATCC--GATTAAGATAAGCTGAGTTATG....................26190.050.050.000.000.00
...............................................................................................GATAAGTTGAGTTATGGAGTTTAGA...........25200.050.000.000.000.05
.........................................................................................GATTAAGATTAGTTGCGTTATGGA..................24180.060.060.000.000.00
...............................................................................................GATAAGTTGAGTTATGGAGT................20200.050.000.000.000.05
................................................................................................ATAAGTTGAGTTATGGAGTTGAGA...........24170.060.000.000.000.06
............................................................................................TAAGAGAAGTTGAGTTATGGA..................21260.040.040.000.000.00
...............................................................................................GATAAGTGGAGTTATGGAG.................19250.040.000.000.000.04
...........................................................................................TTAAGATAAGTTGAGATA......................18290.030.000.000.000.03
............................................................................................TAAGATAAGTTGAGTTATGGAGT................23150.070.000.000.000.07
................................................................................................ATAAGTTGAGTTATGGAGG................19310.030.030.000.000.00
.........................................................................................GATTAAGATAACTTGAGTTATGGA..................24250.040.000.000.000.04
..................................................................................ATTCC--GATTAAGATTAGTTGAGT........................23210.050.000.000.000.05
...........................................................................................TTAAGATAAGTTGAGTTATGG...................21260.040.000.000.000.04
.........................................................................................GATTAAGATAAGTTGAGTTATGGAG.................25200.050.000.000.000.05
................................................................................................ATAAGTTGAGTTATGGAGTT...............20210.050.000.000.000.05
..........................................................................CACATCTAAATCC--GATTAAGA..................................21130.080.000.000.000.08
.........................................................................................GATTAAGATAACTTGAGTTATGGAGT................26150.070.000.000.000.07
............................................................................................TAAGATAAGTTGAGTTATGG...................20260.040.000.000.000.04
............................................................................................CAAGATAAGTTGAGTTATGGA..................21260.040.000.040.000.00
...................................................................................................AGTGGAGTTATGGAGTTTAGA...........21210.050.000.050.000.00
............................................................................................TAAGATAAGTTGAGTTAT.....................18270.040.000.040.000.00
..................................................................................AATCC--GATTAAGATAAGTTGAGT........................23200.050.000.000.000.05
..........................................................................................................TTATGGAGTTTAGAACTT.......18190.050.000.000.000.05
2405 scaffold_4845:663227-663340 - 51.32
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTTGGTATGTGCTTATAATCGCCAC--CAGGTGCCCAA-GCTCAGCAACAAGCTATAGATCATCTCATTT--AAATTCTTAGAATGGCTATGTCATACCCTAGCAGCAAGGACCTC----TC
SizeHit CountTotal NormV040
Embryo
V060
Head
V047
Embryo
V108
Head
2856 scaffold_4929:21018820-21018950 - 51.31
TTTATACATTTGTTTATAATGCACATAAT---AAATGCCAACCATTCATCATGAAATTAT---AAATAGTATC------------------------ATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TATATATATTCATATATATTATATATATTTATATATATTAGAGAT--ATTATAAA--TATTTATAATAGTCTCGTCTTCGTAGGTAAAATACGTTTAATTTGGGTATTCTTGGAATAACTTATTTTTA------------------GTTTCTT
SizeHit CountTotal NormV040
Embryo
V060
Head
V047
Embryo
V108
Head
...............................................ATTATAAA--GATTAATAAT......................................................................................1821.500.000.000.001.50
..........................ATTTATATAGTTTAGAGA.............................................................................................................1811.000.000.000.001.00
....................................ATTAGAAAT--ATTAGAAA--T...............................................................................................1811.001.000.000.000.00
..........................................................................................................TTCTTGGAATxACATATTT............................1811.001.000.000.000.00
1568 scaffold_4512:211946-212053 - 51.24
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAG--TATCATTTCAAGA-TGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTAGTATACCCTTTTACTATACAAGTAACGGGTCCAAAATATTTAACCTGTAAATTTAAATAGGATATTACTTTGAAAAGATATTTTGATGTTTGACTTTTATTAGTA------------------
SizeHit CountTotal NormV040
Embryo
V060
Head
V047
Embryo
V108
Head
...................................................................TTACATTGAAAAGATTTT.........................................1815.001.001.000.003.00
...................................................................TTACATTGAAAAGATTTTT........................................1913.000.000.000.003.00
...................................................................TTACATTGAAAAGATTTTTT.......................................2011.001.000.000.000.00
...............ACTCTGCAAGTAACGGGT.............................................................................................1830.330.000.000.000.33
............TTTACTATACGAGTAACGGGT.............................................................................................2150.200.000.000.000.20
2296 scaffold_4784:25673667-25673793 - 51.09
TTTATACATTTG--TTTATA----ATGCACATAATAAATGCCAACCATT-CATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATT------------TTGTTTTGCAATCAAAGACATCTTTCTT
TTT-TAGATTTGGGTTCTTAGCTAGCG----CACTTAACGTGCACCATTTTATCACACAGCCAACAAT----TAATTTTT----GGCTGCTCAGGCTTTATTACGTGACGGCATTTGCTTTGGAAGC--AGACACCATTTGT
SizeHit CountTotal NormV040
Embryo
V060
Head
V047
Embryo
V108
Head
....................................................................................................TTACxTGACGGCATTTGCG.......................1811.000.000.000.001.00
......................................................................................................................TTTGGAAGC--AGACAACATTAGT2211.000.000.000.001.00
..........................................................................................................GACGGCATTCGTTTTGGAA.................1911.001.000.000.000.00
1871 scaffold_4770:1786126-1786250 - 51.07
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTG---------------CAATCAAAGACATCTTTCTT
TTGATG--------TTTACTGCAATAACTGAACGGTAAATATACATTTGAAAATAAT-----TTAATATTTAAAATTTTATGATTTTTGTTTTTTTTTTATTTGACTAGTCTTCAATTCCAATAAGAAGATGTATCAT
SizeHit CountTotal NormV040
Embryo
V060
Head
V047
Embryo
V108
Head
...................................................................................TTTTTTTTTTTTTTTTTTTT...................................20360.060.000.000.000.06
..............................................................................TATGATTGTTGTTGTTTT..........................................1820.500.500.000.000.00
...................................................................................GTTTTGTTTTTTTTTTTTTT...................................2040.250.000.250.000.00
..............................................................................GATGCTTTTTGTTTTTTTT.........................................1920.500.500.000.000.00
..................................................................................ATTTTTTTTTTTTTTTTTTTT...................................21110.090.090.000.000.00
.........................AACTGAACGGAGAATATA...............................................................................................1811.000.000.000.001.00
595 scaffold_4784:19891603-19891729 + 50.86
TTTATACATTTGTTTATAAT--GCACA-----TAATAAATGCCAACCATTCATCATGAAAT---TATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
GTTTCAAATTTGTTGGCTTTGTTTACATAACTTAATGAA--CGAACCTTTAAGCGCCGATATCTAATAAATATCTTTATTTCCA-ACAAATCACAAAAGTTTACTTTCTTTCACA---AAATATATAATTAAT
SizeHit CountTotal NormV040
Embryo
V060
Head
V047
Embryo
V108
Head
..................TTGTTTACAGAACTTATT.................................................................................................1811.000.000.000.001.00
2448 scaffold_4845:1812996-1813109 - 50.85
TTTATACATTTGTTTATAATGCACATA---ATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTATAT--------ATAATATACATATATATATATATAAAGCATTCTTGATCGGTGTTTCAAAGACTTTATCACCAGATACATAACTAGGT--TATTTAATTTTCCGATAACTGAAAAGCT--AT
SizeHit CountTotal NormV040
Embryo
V060
Head
V047
Embryo
V108
Head
2805 scaffold_4929:20437757-20437882 - 50.84
TTTATACATTTGTTTAT----------AATGCACATAA--TAAATGCCAACCATTCATCAT-GAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
GTCATTATTTTCATCATGCCATATTAAAATGTATACAAAATAAAAT----------ACCACAACAATTATGAAAAATAACTGTTTAATTTATTTTCCGTAATTGTTGTGTTTTTGGAACTCTAAGATATACTTTGC
SizeHit CountTotal NormV040
Embryo
V060
Head
V047
Embryo
V108
Head
.....................................................................................AATTTATTTTCTGTATTTG................................1911.000.000.000.001.00
......................................................................................ATTTATTTTCTGTATTTG................................1811.000.000.000.001.00


droFic1 - 11 hits found

Lastz ID Coordinate Normalized Identity % Sequence RNAfold UNAfold
52 scf7180000454048:281166-281287 - 51.88
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATG-AAATTATAAATAGTATCATTTCAAGATGCATGGTAAGG--CTTTATTTTGTTTTG---CAATCAAAGACATCTTTCTT
TCCAGAGGTTT-TCTGTACTAGATACTTT-AATAAAAAAGTTTTTTAATATAAGTTATAAGT----TCATCTTAATGTACATTTTGAGGAAATATATATTATTTATTAACAATA-AAAAAGTTCTGGTT
SizeHit CountTotal Norm
16 scf7180000454039:591481-591593 + 51.63
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCA-ATCAAAGACATCTTTCTT
TTGGT---TTTATGTATAAAACAAATATAAAATATTATATACATATCATGATTTTATTGCTATTCATATTTC--GATTTAAGGAAATTCTACCC----ATTTGCCAA--ACATACAATTTTATT
SizeHit CountTotal Norm
8 scf7180000453833:60686-60810 + 48.06
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAA-TTAT-AAATAGTATCATTTCA--------AGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT---------------
TTTGTTAATAAGTTTGAAGTGT----AGCAAATAC----TATTCAAC-TGAAAAAAATACTGTGGTGCCCCCTCCAATAAGATGGATACAAAGTAAAGATTTTCT--------------GAGCCATTTTTTCTAGAAAACGAAAAACA
SizeHit CountTotal Norm
7 scf7180000453580:71833-71962 + 47.95
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTC-----------------AAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TCAATGCATTTAATGGAAAGACTTGAAAATAA----------TCTTTGCTAGATTAAAAAGGTCATCGCGTTAACCCCGGCCTAAAATAAAGAAGAATATTTACTCCTTATATTTTATTATTCTTTAACTCATATTTTTT
SizeHit CountTotal Norm
3 scf7180000451914:493-578 + 42.48
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TCTATGAATTTATTTATAAATCATATGATAAGTTA------T------------------TCATATGCTTAC-------------ATTGTTAATTAAGCTTTACCAACATTAACATCTGAGGA
SizeHit CountTotal Norm
43 scf7180000453912:2035890-2035979 - 36.36
TTTATACATTTGT-----------------------------------------TTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
GTTGTCTATTTTTAACCCTTTATTTGAACTAGAATACCTCGACTAGAACTTTTTTTAAAAC-----------------------------GTCAACATAATTGCTATGATTTTAAGAAG---------------------------------------------
SizeHit CountTotal Norm
14 scf7180000454039:591032-591109 + 36.36
TTTATACATTTGTTTATAATGCACATAATAAATGCCA---ACCATTCATCATGAAATTATA----AATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
CTTAAATATAGATTTTTAACTTACATTAAAGAATTCACACACAATTTAATATAAAACAAAATTTTAATAGAACGATTT----------------------------------------------------
SizeHit CountTotal Norm
22 scf7180000454048:281093-281259 + 34.28
TTTATACATTTGTTTATAATGCACA------------------------------------------TAATAAA--TGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
ATTATAGATTACTTTGTAATAAAGGATCTGATAATTACAACAGCGTTATCTCTAATTAAACTTTATATAATGGAACCAGAACTTTTTTATTGTTAATAAATAATATATATTTCCTCAAAATGTACATTAAGATGAACTTATAACTTATATTAAAAAACTTTTTTATT
SizeHit CountTotal Norm
45 scf7180000453912:2037018-2037071 - 26.93
TTTATACATTTGTTTATAAT-GCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTACT-ATCTGTTTTCAATCGCAATTA--AAACAAAATTGATTCATCGTTACACTA-------------------------------------------------------------------
SizeHit CountTotal Norm
41 scf7180000453833:60806-60820 - 9.09
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TATACATACTTGTTT------------------------------------------------------------------------------------------------------------
SizeHit CountTotal Norm
None None
5 scf7180000453580:71518-71523 + 4.96
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTATA---------------------------------------------------------------------------------------------------------------------
SizeHit CountTotal Norm
None None


droEug1 - 277 hits found

Lastz ID Coordinate Normalized Identity % Sequence RNAfold UNAfold
36 scf7180000405460:7334-7455 + 55.45
TTTATACATTTGTTTAT----AATGCACATAATAAATGCCAACCATTCATC-ATGAAATTATAA-----------------ATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCA-AAGACATCTTTCTT
TTTA-ACAAATGTTTATTTAAATAAGAC-TATAAGATACCCGTGACTGTTCTATACAATTATAAAATATTCATTTAATATAATAGTACCACTATAAGATACGC--------------------TGGTATCTAA--AGATTGTACAT
SizeHit CountTotal Norm
135 scf7180000405875:11874-11994 + 53.6
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATT--ATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TATATACAGTTTTTCATTTAAAACCCTTTAAAATATATGTATTTTTTATAAAAAACTCAGTTCAGTTTCACATCAAAA----TGGGCAAGTTTCATTGTGAGTTATGCTCGGACTAAAAATCTTT
SizeHit CountTotal Norm
3021 scf7180000409230:433677-433796 - 53.22
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
ATGATGGAAATGCAAATAAAGACTTTA-AAAAGGCAAAAAATCAACTTTGAGCTTAAAAGTGATTTATTTTTTAAGAACTTCCTCAGTTTTTAAGCTATTTTT--TTTAAAGAAAAATTTGTT
SizeHit CountTotal Norm
2237 scf7180000407055:34319-34437 - 53.14
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAA-AGACATCTTTCTT
T-TACACTTTAAAATATAAATCGAATTAAAATTTTCAAA-ATTTTTAAAAAATTTACATGCAAAATTTTTTTAAAGAACAAAG---AATTTTTTGTTGTCTAGCAACCGACCAACCACTTTGTC
SizeHit CountTotal Norm
417 scf7180000407967:639-752 + 52.67
TTTATACATTTGTTTAT-AATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATA--GTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTG-CAATCAAAGACATCTTTCTT
GTTGT-CATAGATATACAAACGCAAATAACAAATACTTAACAG--ATTTTGATCCAACAAAGAAATCATCCTT-TATAATGTA---------TTTCTTTCGTTTTGTCCGTCAAATAGTTTTGCCTC
SizeHit CountTotal Norm
3655 scf7180000409746:13148-13270 - 52.17
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGA-AATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTT-----GCAATCAAAG---ACATCTTTCTT
TTAATA----TGCTGAAAATATTAAAATTAAACGTAAATG-TATACCTCAATAATTA----TAACCACGTACAAAGACGCATAAAAAAGCACTACCCTATAATAATATCCATTCAAAATGCACACCTCTGTC
SizeHit CountTotal Norm
3088 scf7180000409375:5856-5978 - 51.37
TTTATACATTTGTTTATAATGCACATAATAAATGCCAA--CC---ATTCATCATGAAATTATAAATAGTATCATTTCAAGAT-------------------GCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
---ATACGTAGGTTT--------TATAATAAACGGCGAAGTCATAAATCAACATAAATTT---------ATTATTTTAAGATTTGTTAGCTTTAGCAATATGC--AGAAAAATTTTATTT---TTGGGAAAAGAAATTATCAGTTTT
SizeHit CountTotal Norm
313 scf7180000407520:9305-9427 + 51.09
TTTATACATTTGTTTATAATGCA-CATAATAAATGCCAA-CCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGG-TAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
CTTATCAAAGTGG--AAAATGTATGATTTTCATTACCAATACATGAAACCCAAATTTCAAGAAAATTTGGTTTTAAATTACATGGATACAGACTTATTTATCTATACTATAA-AAACTGATGATTT
SizeHit CountTotal Norm
3162 scf7180000409462:3387068-3387183 - 50.98
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATC---TTTCTT
TTAATTTAT-----TTTAATGAGTACTATAATTTATTAAATTTAACCTTCAGTTTATAGTAAT-----TCCCAAGCTAAGCCAAAAATCCTCAATTTTTGTTACAAACAAATAAATCTAATTTATT
SizeHit CountTotal Norm
2027 scf7180000404992:74272-74383 - 50.62
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCAT-----TTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTAAATTTTTGTATATTAAGTACAAACC-AATG-------------TTGGAAAGTAAAAAAGTATCATTATATTTTATTTTTCTTCTTAATTATTAATTTTGTCTTCCATTTAAATT--TTTACTTT
SizeHit CountTotal Norm
1085 scf7180000409181:151354-151477 + 50.6
TTTATACATTTGTTTA---TAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGG----TAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCT-----T
GTTATAAAAATGTACATTTAAATGTATAAAA-------AAAATATTTAAAAACAAATTTTAAATGTTAATGCGTAAAGATAAAAGTACATAAAAATGTAAATTTGAATA----TGAATGAAATTTTTATAAAAAT
SizeHit CountTotal Norm
2033 scf7180000405174:95250-95377 - 50.51
TT-TATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGC----TTTATT----TTGTTTTGCAATCAAAGACATCTTTCTT
TCTTATATATACTTTCTTTACCCTAGCAATAA--GCAAAACATCTATAAATATCACATAAAGATATTTATTTATAGCTGCATCATTGCCTTAAACTTATCGCGTTGTTTTTGCTTT-AA-AGCCTCGTGCTT
SizeHit CountTotal Norm
204 scf7180000406964:104819-104935 + 50.19
TTTATACAT---------------------------------TTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTC------------TT
TATGCAAATGTTCTGTAAAACATACATACACCTTTACAACAATGGTTGATATCGTATATAAAAAATAC-------------------------------AATTACAGTG-----TTTAAAGCTTTATTTTGAA---------------TATTTTTTAAACTTAAAATT
SizeHit CountTotal Norm
587 scf7180000408800:8920-9046 + 50.15
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGC---------------------TTTATTTTGTTT-TGCAATCAAAGACATCTTTCTT
TCCTCGTTTTTATTTATAATCCTTAC-------GCGAACAATT-------TTATTTTATAC-ATTCAGTTCCAGGATCAATGAATAGGTCAATGAATAATCCATAATTAATTTGTTTTGTTCGTGAAATA---ATAATCCGTAAT
SizeHit CountTotal Norm
2256 scf7180000407142:744-875 - 50.0
TTTATACATTTG--TTTATAATGCACA-TAATAAATGCCAACCATTCATCATGAA-----ATTATAAATAGTATCATTTC--AAGATGCATGGTAAGGCTTTATTTTGTTTTG--CAATCAAAGACATCTTTCTT
ATT---CATTTGAATTTACAGCGACCATTGGTAAGGGATATTCGTTCATTTTTAAAATTAATCATGCATACTATTGTTAGAAAAGATATTTATATAGATTTTATATTGTGGTAATAAATCAAAGCTTTACTACAA
SizeHit CountTotal Norm
800 scf7180000408984:673042-673162 + 50.0
TTTATACATTTGTTTATAATGCACATAATAA----------------ATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAAT----------------------CAAAGACATCTTTCTT
TTCTTGAACCTCTCTGAAATTAATAAAAATACTTTTAAAAAAAGAACACGATAATTCTATGTCATAG-----------------------------------CATTATATCTCGCA-----ATGTATATATAAAGCTATTATTAAAATAGGGAGGTTTCTT
SizeHit CountTotal Norm
1913 scf7180000409804:1328164-1328288 + 49.87
TTTATACATTTGTT--------TATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTT--GTTTTGCAATCAAAGACATCTTTCTT
TATATACACGTGGTTGGTTTTACATGGTGTGTACGGTATATGTTA--CATTCCTTTTGACAACACATGTAG-ACAAATGCAATGTTCGGGGGGAGCTTTGACATTTCG-TTTACACTCAC--ATATCCG--TC
SizeHit CountTotal Norm
404 scf7180000407927:11446-11560 + 49.86
TTTATAC--ATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTG--CAATCAAAGACATCTTTCTT
TTTATAACGATTAGCTG-------ACAAAATGA--GCGTAAGATTCAAAACAATATCTTATGAAATAATATTTAATTAAAT---GTGATATCATATTTTATTTAATCGATTTCAAAACACCGTTGTA
SizeHit CountTotal Norm
2496 scf7180000408412:6149-6274 - 49.85
TTT-ATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT------------------------------------------
TTTAATTCGAGTGTATATAATATACACAAAAAAGATTT-TTATTTATAAT---------------------------------------CATCATGTCTGTTGACAAGTTTGGACATTTTTCTAATGATAGGGAGCTATCAAATCATTTAAAATGAAGTGTTAAAT
SizeHit CountTotal Norm
1313 scf7180000409471:1685232-1685351 + 49.59
TTTATACATTTGTTTATAATG-CACATA----ATAAATGCCAACCATTCATCATGAAATTATAA--ATAGTA-----------TCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTATATCGAGGTTCCTATATCCAAATACTTCAAAACTGTT---------TTCAAAAATAAAACATATACTCGCCTATTAAACTTATTAAAGAA-----TGTATATCTTTCATACGTTTTATC---A----AATACTTTAT
SizeHit CountTotal Norm
790 scf7180000408984:402578-402697 + 49.59
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTT---TGTTTTGCAATCAAAGACATCTTTCTT
TTCAACAAATAATTTAAGTTACACAAAATAATGTATAATAATTGTAAATAA------ACTAGGTATACATACACTAAGTTTGTAATTGGTTTTATTTACTACATTTTTATCCAAAACTTTCTTGTC
SizeHit CountTotal Norm


droBia1 - 394 hits found

Lastz ID Coordinate Normalized Identity % Sequence RNAfold UNAfold
1028 scf7180000302178:13133-13249 + 56.34
TTTATACATTTGTTTATA--ATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCA-AGATGCATGGTAAGGCTTTATTTTGTTTTGCA-ATCAAAGACATCTTTCTT
TTTATACAATTTGTTATATAGGAAACATAAGTTTTACCA----CTTTTA--AAAAAAATAGATAGTTTGGCGAGAAAAATGCTGAGAATAGCTTAATTTTGT---ACACATGAAAAAAA-TTTTGTT
SizeHit CountTotal Norm
2340 scf7180000302073:131239-131361 - 55.89
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTAT-AAATAGTATCATTTC-AAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACAT---CTTTCTT
TATAGTCGTCCGATTTTAATAAAAGTCTTCTTTGTAAATTCGAAATTCAGAACTAATTAAAAAATGTTATTTTCAAGCT----TATAAGGTTATATGTTAA-AAGCCACCAAAGATATAATTTTTATT
SizeHit CountTotal Norm
1977 scf7180000301495:309905-310027 - 55.0
TTTATACATTTGTTTATAATGC----------ACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTCTTACATTTATGCATCACCCTAAAACTAAGATGTGATGCATACAAAC------CCACAAAGTGACAAACATTTTAATTTTGGGA-AAGTTATGAGGTTTTTTTTTA---AAACACCAAAGATATAATTTTT
SizeHit CountTotal Norm
2732 scf7180000302377:1433701-1433829 - 54.49
TTTATACAT---T---TGT-TTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCA---A---AGACATCTTTCTT
TTGGAATATCATTTTTTGTATTTTAATGCATATAAATTATA-TAATTATAAATTATATAA-TAAAAATAGTATGACTTTAACATATA-----AGTATTTGTTTTTTTTTAATATCACTGAATATAGCAACAATTTT
SizeHit CountTotal Norm
722 scf7180000301760:5073770-5073894 + 53.69
TTTATACATTTGTTTATAATGCACATAATAAATGCCAA--CCATTCATCATGAAATTAT--AAATAGTATCATTTCAAGATGCATGGTAAGGCTTT--------ATTTTGTTTTGCAATCAAAGACATCTTTCTT
AT-------TTTTTAGCAATTTTCGCAAAAAAAGACAATGCTATCCCTCGTAAAAAAATTGAAACCTTTTTGTTTTAAAAATCAAAGAAA-TCTTCGCAAAGAAATCAGGTTTTGCCA--AAAAAAAACTTTATT
SizeHit CountTotal Norm
1993 scf7180000301495:674217-674335 - 53.24
TTTATACATTTG--TTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTG--------CAATCAAAGACATCTTTCTT
TTATACTCTTTACTTTTATAATATCCT---------TAAACCCTTTATAAGGATATTATAAATAT-----TTTAAAGGTGGAAATATAAATATTATTTTATTTTATAATAGTGTAATTTAGGTGATGTTATAT
SizeHit CountTotal Norm
169 scf7180000299633:562-686 + 52.73
TTTATACATTTG-TTTATAATGCACATAATAAATGCC--AACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATG-CATGGTAAGGCTTTATTTTGTTTTGCAATC---AAAGACATCTTTCTT
TTTGTACTTCTTGATT-TAGAA----AAATTTTTTCTTAAAAAACTGATTATCATATTATGTTTAATACCATATCATGTTTATTTTATAATATTATATTTATTAAAACAATTTCAAAAGTCTTCTTTCTT
SizeHit CountTotal Norm
675 scf7180000301697:8976-9097 + 52.28
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTA-AGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TCTGGATTTTAATTTTTTATATACAAAGCTTAGCCTAACAATTGTGCTAGAAATTTTAAATAGATC--TCCCAGGAAACGGGTACGTGTTAATAGTTATTTTAACATTTCTATTAGTCTATTTG
SizeHit CountTotal Norm
898 scf7180000302120:717-840 + 52.25
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCA--TCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTT-ATTTTGTTTTGC-AATCAAAGACATCTTTCTT
TATATACATTTATATTTAAGAAAACGACTGAAAGATGTTCATTAAATTAATTGCTTTACCTGTAAAATAATTCAAGAATTCTCA---AGGAACTATCTTTGTATAGTTAATCAAGACTTTACTTCCT
SizeHit CountTotal Norm
1810 scf7180000301245:40736-40847 - 52.25
TTTATACATTT-GTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCT-TTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTCTAAAATATAG--AAAAATATTTCTAAAATATACGAATTGTTT-TCTCGAAA---TAAATACTTTTGTTTCAAAATTT----TATGGCATTTATTTTCT---TAAATCAAGGGCAATAATCCT
SizeHit CountTotal Norm
607 scf7180000301587:22191-22314 + 52.25
TTTATACATTTGTTTATAATGCA-CATAATAAATGC--CAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATG--GTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
GTGATAAATCCGTTTGCCATTTAGCCTTAAAAATGCCCCGGCTACTTTCCAAAGATGTATAAACAAT-TTATTAGAAGATTTAATCTATAAAGA-TTGTTTAGTATATC--TAGATGATATTATAATT
SizeHit CountTotal Norm
2059 scf7180000301518:110719-110838 - 52.24
TTTATACATTTGTTTATAAT-GCAC-ATAATAAATGCCAACCATTCATCATGAAA---TTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
CAGCATAATTTATTTATCATTGCATCAAAATAAGTA------GTTGAATAAAAGACTCTCCTAAGTTATATCTGCATTAATACAATGGTGACAA-TTATTTTCCCTTCAAATGTA-GGTCTGCTTTTG
SizeHit CountTotal Norm
2896 scf7180000302455:11184-11307 - 52.09
TTTATACATTTGTTTAT--AATGCACATAATAAATGC-CAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGA-------TGCATGGTAAGGCTTTA---TTTTGTTTTGCAATCAAAGACATC-----TTTCTT
TTTATAGATACTTTCACCAATTGCGCTTAATATAGGCTGAAGCGTTGTCCAAGCAACCTT------------TTGAAGACTTCCAATGTAT-----GAATGTACTCCTTGAGTTTTCGATAGTAAACTTCAATAGTTACTT
SizeHit CountTotal Norm
1948 scf7180000301481:21509-21622 - 51.85
TTTATACATTTGTTTATAATGCACATAAT-AAATGCCAACCATTCATCATGAAATTATAAATAGTATCATT-TCAAGATGCATGGTAAGGCTTTATTTTG----TTTTGCAATCAAA--GACATCTTTCTT
TTTAT-------TTTATAA----CATATTAAAATGTCCATC--TCAACAAATAGTTCAAAATTATGTCCTTATCGTGAA----GATGAGCGATTATTTTAAGCTATTTACGGGCAAACTAGCATCCCACAT
SizeHit CountTotal Norm
2623 scf7180000302291:525888-526013 - 51.83
TTTA--T-ACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTAT-CATTTCAAGATGCATGGTAAGGCTT--------TATTTTGTTTTGCAATCAAAGACATCTTTCTT
GTTTACTAAAATATTTTAAGAATACTAACA---------GAATATTTATCATTGAATTTTGAACATAGCCCAATTAAATAAAGTTGATAAAGGTCACCCACAATATTCTTTTCTAAAATGAAACAATTGTTTATA
SizeHit CountTotal Norm
765 scf7180000301981:27583-27699 + 51.42
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAA-GGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTAAAAAATTTA-----AGTGCCTATATTGAAAAC--AACAATAATTTTAAAATCAAAAATCCAAATCGGTCAATACGCACTTAATCTGAAATATATATATATATAGTTATATAGATGTTTCTT
SizeHit CountTotal Norm
2335 scf7180000302073:22451-22571 - 51.11
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATG---CATGGTAAGGCTTTATTTTGTTTTG-C-AATCAAAGACAT----------CTTTCTT
TTCAGCTGTCTGATTCTGATAAA----ATGAAATTC-GAAATTCAGAGTTAATT---AAAAAATGTTATTTGCAAGCGGTTGATGGTA------TAT---GTTTAAACAAACCAAAGATATAATTTAAAAACATTTTT
SizeHit CountTotal Norm
1796 scf7180000301229:96594-96712 - 50.76
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCA--ATCAAAGACATCTTTCTT
-----ACAGTGATTCAGAATTAATTG-ATAACGTTCATTTTTCAGTTAACTGACTACAAAGATGTTCTTTTTTAATAATACTGTAACGATTAATTCTACGTTACTAATTTAAATTTATATTTTAT
SizeHit CountTotal Norm
14 scf7180000297083:9947-10069 + 50.68
TTTATACATTTG--TTTATAATGC--ACATAATAAATGCCAACCATTCATCATGAAAT----------TATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTGTAGATTTCGACTTAAAATAATTGTATAATAAATGTAGTAAATATATTAAGAAAAAATTTATAAACACAAATAAAATAAACTTAAATTAAA-----------AATTTTGAATTGG---TAAAAAATTGACCCTT
SizeHit CountTotal Norm
2966 scf7180000302519:190297-190419 - 50.59
TTTATACATTT-GTTTATAATGCACATAATAAATGCCA----------------------ACCATTCATCATGAAATTATAA--ATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
AATATAAATTTTGTTT----AGCACATAAAACGTTTCATTGACATGACAAATTAGGCAATACACGTCGTATTGAAGTTGTAGTGATATTTGCAC---------------------TTATGGTGCTTAGAAAATGTATTACGCAGGCTT
SizeHit CountTotal Norm
2066 scf7180000301518:315385-315504 - 50.41
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTC--ATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTT----TATTTTGTTTTGCAATCAAAGACATCTTTCTT---
TGTA------------GAATAAATGGAAAAAACACCAAATTTTTATACGACAACATTTTAAGAAATACCTAACCTAAACAAAGCGGAACGCTACGGTCAAGTGGCTCGACTATCAGATACCTGTTACTCAAT
SizeHit CountTotal Norm


droTak1 - 816 hits found

Lastz ID Coordinate Normalized Identity % Sequence RNAfold UNAfold
4691 scf7180000413709:12828-12948 - 59.23
TTTATAC------------------------ATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTATACTAATAATAAAACAGATTAGTATAATTTTCTTTATAAGGAAATTA---------AACTTTTGTTAGTGGAG-----------------TGAAAATGCTTGATTTAATTTTGTTATCTTTTGCAATTTATTACATTTTTGTT
SizeHit CountTotal Norm
1579 scf7180000414562:300298-300423 + 55.83
TTTATACATTTGTTTATAATGCA-CATAATA--AATGCCAACCATTC--ATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCA-ATCAAAGACATCTTTCTT
TATTTGAATATATTTGAAATGTGATATAATATCAAATTTATATGTTCGAAACATAAATTTATTATTAG--TCATATCAA-ATTTATCTTATGTTATTTAATTGTTCCACAAAACAATCACATTTTGTAT
SizeHit CountTotal Norm
7248 scf7180000415867:509758-509865 - 55.18
TTTATACATTTGTTTATAATGCACATA-ATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TACACAGA--TACTTAAATCGTATTTAAATAAATAACAAACATTATTTTCTTATTTAT--ATAGTTAAACTTGAAATTGAACAATAAAGATTCATTTTGTTGTTCAATAAAA------------
SizeHit CountTotal Norm
3050 scf7180000415754:95655-95774 + 54.74
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTT--TATTTTGTTTTGCAATCAAAGACATCTTTCTT
ACAATAAAAGCTTTTATAATGAAATTAATAAATTAAAATTACTCAATAAGTGAGCAACAACAATAAATTAC-----CGCACATTAATTAGTAATATCCTGTTTTTAAATAGAATACACATTTATT
SizeHit CountTotal Norm
4084 scf7180000411277:4933-5059 - 54.55
TTTATACATTTGTTTATAAT-GCA--CATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTT--TTGCAA-TCAAAGACATC--TTTCTT
TTTAAACATTTGTTTGTGTATTTATTAATAATATGTACAATCGAAGCAT--TGGAATTAAAAATT--GTTAATGCCTGAAGCATTCCCGGTTTTTGCTTGGCCGAATGCAGTTCTTAGGTATCCATGTCTT
SizeHit CountTotal Norm
1766 scf7180000414854:3827-3947 + 54.47
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTG-TTTTGCAAT--CAAAGACATCTTTCTT
---ATGTATTTGCTTGTAATTGATTTAATAGGGGCCCTCCATGGACAGA--GATTTCATAAGATATCCTTTGAGCATGGAGGACCAACAAATACTTTAATTATGTGATTCTGAAGAAATCGCGGTC
SizeHit CountTotal Norm
4597 scf7180000413362:611-729 - 54.13
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCT---TTATTTTG---------TTTTGCAATCAAAGACATCTTTCTT
------CACTTGTTTGTACTTCTCGTAGTGCAT--CAA-CGTCCATCATATATTAATTTGTATCATCATT----GATGTATTCTGCGTTTAAATTATTTTGATAACATATTTTATCAAATAAAAACACCTCT---
SizeHit CountTotal Norm
2555 scf7180000415395:437996-438115 + 54.09
TTTAT-ACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTT--CTT
TGCACAGCATTTACTTAGAATGTTTAAAAA---TATTTTTCAG-AGTAATGGGATTATTAAAAA-AATGTTATAATATTCTTGGTT-GATATTTTAAAGTTAGGGACTTTAAGAAATAATACAAAT
SizeHit CountTotal Norm
1347 scf7180000414303:12263-12382 + 53.22
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TATATAGCTGG-ATTGTTTTCCACTTACTGACGCCGCAGTAATTACATCCAGATTATCAGC--CACCTTTTCCAAATGTAGCAGCGTATTATGTCTTTTGTTGCAATTAAAGCAATCTCTCTT
SizeHit CountTotal Norm
2880 scf7180000415671:339008-339122 + 52.97
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTC------------------ATCATGAAATTATA---AAT---AGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACAT-CTTTCTT
TT--------TGTCTAGAA-CCACAGAAGATATGTTTACCTTCTTCTTCTTCTTGCACAATGATTACGTAATCATTTTATATGAATCTTTTATTTAAAGAA------------------------TTTATTTAAAAACTTGTTTTCTT
SizeHit CountTotal Norm
4609 scf7180000413405:3983-4101 - 52.96
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTG--TTTTGCAATCAAAGACATCTTTCTT
TTTTCCAATT--TTTATTATATAAATTGAAAATAAGTCTTATTCATA-TG-AGTTATG-ACACGACCATGTCCAAGGACATTTTAAGGACTTAAAATGGCTTTTATTGTTCTATATATG-TGCTT
SizeHit CountTotal Norm
7137 scf7180000415827:1024-1138 - 52.8
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAA-ATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAA----GACATCTTTCTT
TATAGAAAAATAATATTAACCCAACAAAAAAATTCT---TTTTCAAGCTGAAGTTTAAAAATA---C-------GTATGCAATTTACGATTAAAGTTTTTACTGTATTTTAAGCTTTACATTTTTATT
SizeHit CountTotal Norm
886 scf7180000413414:69875-70003 + 52.67
TTTATACATTTGTTTATAATGCACATAATAAA------TGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
AATATGGATATATCATTAATGGATATAATAAAATATAAATGCTTACGTTTAACATATAATATTATTTTATATCATATTATGATAAATTAAAATACTTTTAATAATATTTATATAAAAAATATTTTAATT
SizeHit CountTotal Norm
5761 scf7180000415151:8813-8935 - 52.47
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGG------------CTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TCGAAAAATTAATGTGAAATA---ATAAGAAATATAACT--TTTTTTGTAA----ATTAATAGAATGATCTGCAAGGGTATAGCTAAGGAAGCCAGCTTCCTTTCTTTCGGCTTGC---CGAAGCTAGCTTCCTT
SizeHit CountTotal Norm
214 scf7180000410889:3741-3858 + 52.39
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGG-----TAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
ATTAACTTATATTTTATAAAAGT-------CATTCATAACCGTTATCATTGACTTTTAAAAAATAAAATTTCCAAATAAAAGTCTGACAAAAACTTTTATTCGAAGTAAAATCAAATAAAAGTCT---
SizeHit CountTotal Norm
2863 scf7180000415664:36758-36878 + 52.27
TTTATACATTTGTTTATAAT--------GCACATAATAA-ATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTT---TTGCAATCAAAGACATCTTTCTT
TTTAAATAATTATTTACAATTACAGGCTACCCACAATAATATTTCGATTATTTTTAA--AAAGTTTATTCAACATAATTTCAAAAGAAATA---------TAGG---TTTTAAAAAAATAAAAATTAGTATTGTT
SizeHit CountTotal Norm
3769 scf7180000410358:5955-6079 - 52.12
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAA-----GATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTTCATGTTAGGATCTATTTCGCTGGGAAAAATAATTGAAACAATGGTAAAATAGTGACATTTACCATTTTTTTTACCAGTGTA---TGTAGCTCTACTGTTTACTGCACTCAAAAAGCTTCTTATT
SizeHit CountTotal Norm
4520 scf7180000413127:27689-27803 - 52.12
TTTATACATT-TGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
CTCATATCCCTCACTC--AATATCCCTCAAAA--ACAAGCCGACTGTGATGAAAATAAATATA-TATCAA-TCACGATACAAACAAAT-TGTCATCTT--TGCTCATTCAAATACATATCGCTC
SizeHit CountTotal Norm
2032 scf7180000415157:407734-407849 + 52.02
TTTATAC------ATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTCGACTACATAATTTGTTTATTATATTT----TAAATTTTAT---------TGTAATTTATCTTCATTTTTATTTCAACAGAGTATATAATTTATTATTTAATATTTTATTTAAAGAAAAATATTTT
SizeHit CountTotal Norm
2047 scf7180000415160:8292-8411 + 51.95
TTTATACATTTGTTTATAA---TGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
ATTATTTAATGTTGTATAAATATAGATAAAATTTATAACTATAATTAAATAAAAAATTTTAAATAAAAATA--CAAATAATTATTATAAAATATTTTTATATTTAATAATAATAAAAATA----AT
SizeHit CountTotal Norm
5441 scf7180000414671:257736-257855 - 51.91
TTTATACATTTG-TTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTA--TAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTTCCAACCAACTTTTTATTAAAGAT---GAGGGCGAGAAAATGATGATAAACTTGTATAATTTGTAGGCTTTAGTTATATATGCTAA---TTTCTCTTCTTTTACCGATAAAAATAATGAGTTT
SizeHit CountTotal Norm


droEle1 - 48 hits found

Lastz ID Coordinate Normalized Identity % Sequence RNAfold UNAfold
524 scf7180000491080:2841398-2841515 - 51.14
TTTATACATTTGT-TTATAATGCACATAATAAATGCCAACC-ATT--CATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
A-AATATATCGAATTTAAAAAG-AAAAAGTGAGTGCTAATACATTTTTTTTATACAATTGGAAATAAAAACATTTAAAAA--AAGAGCAGGGCTCAACCGGGATTTGAAC-CCGGGACCTCT-----
SizeHit CountTotal Norm
535 scf7180000491104:1079849-1079967 - 51.14
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCAT----------CA-----TGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TT-----ATTTTCTTGAATTTCAGCTAAGAAAATTTAACCTTTTATATAATATTTTTATGAACTAAAATTATCAATAGCCC---TTTTGGGCGC-----AATACTTAATTTTA------AATTTCGGGTAGCTATCCC
SizeHit CountTotal Norm
366 scf7180000486474:445730-445862 - 48.42
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAG----ATGCATGGTAAGGCTTTATT----TTGTTTT--------------GCAATCAAAGACATCTTTC-TT
TA--TAAAGATATTTACAATAATTGTAA-AGATATAAACAATACAATATATAA------AT-----AATTTAAATAGTTATGATTAAGAAGAACATATTTTTTTTATTTTAATAATTGATATAAGTATTTAAAGAAATCTTCCCGT
SizeHit CountTotal Norm
504 scf7180000491024:167676-167793 - 48.41
TTTATACATT-------TGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTT------------GTTTTGCAATCAA-AGAC-ATCTTTCTT
CATATATATTTAACAACTTTTTTTAATTTTTGTAACAGTTGCCAATTTATT------------------TGAACAATTCAAGCTGTCTTTTAT--------TTTATTCTTAAGTAGGTTTAGTTAACAACAAACAATTTTTATC
SizeHit CountTotal Norm
166 scf7180000490970:299375-299495 + 47.73
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAAT----------------------------------CAAAGACATCTTTCTT
TATATATATTTATATTTGCCTAAA----------------------------ATTAAAA--------ATGTCAAGAAACATTGGATAATTTTATTTTCCTTTTAACAAGAAGAACCTTAATATTGTTCGTGTTCGTGTAAATTACAAAAAGTCTTTT
SizeHit CountTotal Norm
208 scf7180000491028:3351997-3352122 + 46.95
TTTA--TACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCAT----GAAATTATAAATAGTATCATTTCAAGATGCATG------GTAAGGCTTT--ATTTTGTTTTGCAATCAAAGACATCTTTCTT
TACAGTTACATTTGCTTATCC-----CTGTTACTTGC--ATTCTCCGTTTTGGGCAAGCTTAACACCAGCG-CATTTTAAAACGCACGCGCTTGAATAGGTTTTGAAGTCCGTGCCGCAAACAGGGCTATATT---C
SizeHit CountTotal Norm
592 scf7180000491238:217456-217581 - 46.21
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAAT--------AGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTT-----TCTT
---ACATATTTTCTTAGGAAATAAATAGGAA-----AATTACTCCTAATAAGACAACAAAACAAAACTTTATAACGTGTCTTAATATATTGTAAGGT--AATTCTTCTGCACAAATTGAAATATCTTAATATACCC
SizeHit CountTotal Norm
537 scf7180000491104:1082664-1082790 - 46.15
TTTATACATTTGTTTAT------------------------AATGCACATA-------------ATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCA-AGATGCATGGTA------AGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTT-------TATTTAAAAAAACAGAGAGAATTAAAATGAAAATTCAAAGAATAAACCATCTTAATAAATTCCA-----------------TATAAATAACATTTGTGTAAAGATAT-TGATAACTTAATTGCTTGAGACTATTTTATAACC---------------
SizeHit CountTotal Norm
100 scf7180000490497:6044-6146 + 45.84
TTTATACATT-------TGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCA-----------------TTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTATACATTTCAAGCTTGTCAAAAGTGTATATATTAATTA---------AATTATATAATTATAATCAATTTCAAAATTATCCATATAGTGATTTAAAATATATCATAACG-----------------------------------
SizeHit CountTotal Norm
494 scf7180000491008:1296897-1297014 - 45.76
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAAT-----------------------------------AGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TCTGTCAACTGACCTCAAACCCACCTGCCCGCTT--------CCGTTGTGAAACTAAAGATTAATCAATTCATTTTCTCTCAGCCACAATAATTTTTATATCGTTTTAATATGGCTGGT---------------TTTACGA-----------------
SizeHit CountTotal Norm
455 scf7180000490694:37464-37589 - 45.06
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATT--------ATAAATAGTATCATTTCAAGATGCATGGT-AAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
AAAACA----TATAAAAAATACACTTAAAACAAGAAAGTATGCTATAGGCGAGTTCCATATAAATGAATGATCTAA--ACTAAATGTATATACATACTATTATTGTATTTTAAATTTGTAAATGGCTGTATG
SizeHit CountTotal Norm
304 scf7180000491238:764208-764334 + 45.05
TTTATACATTTGTTTATAATGCACA---------------------------TAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TAAATTCATAAGTTAATAATCATTGGGAAAACGATGTGAGTAATATATTAAAGGCAAAATGTTGGACAGTGACTGTGAACGCGTAAATG-----------------------TAGCTTGATCTTATAATGCCAATAACCGGAATTGATTT
SizeHit CountTotal Norm
528 scf7180000491104:592567-592699 - 44.49
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTAT-----------AAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTTAGGATTAAACTTTTATAAAATTAGTTAACGCTCTCAAATATTTAAAAACCTTTTACCAGCAAGCAAGAAATGTGTCCTACAGTTAATTTACACATATATATATTGCTTTATATTT-ATAACGTCTTTTTT
SizeHit CountTotal Norm
349 scf7180000491286:15462-15575 + 44.43
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTCTTAGCACTATTTGTTGTTATAATATT---------GCGTTCATTAAAAAATTATAAATTTTTTTCATTTGGTATAATGACCAAAAATTTAAGTCATAAAAGAATCGACGTTTTCTGCCTT
SizeHit CountTotal Norm
91 scf7180000490403:1046-1159 + 44.43
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTCTTAGCACTATTTGTTGTTATAATATT---------GCGTTCATTAAAAAATTATAAATTTTTTTCATTTGGTATAATGACCAAAAATTTAAGTCATAAAAGAATCGACGTTTTCTGCCTT
SizeHit CountTotal Norm
531 scf7180000491104:819022-819128 - 44.16
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCAT---------------------TCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
T------ATTTTTTTATATTGCGAAGAATTAACGTCTTAAAGGTAACAGTAACTGTCATAGCCTTTTCAGAAAATTTGAAACAATGCT------------------------------TTTTTGTAATTGA--TCATTTTGATT
SizeHit CountTotal Norm
406 scf7180000490168:40334-40427 - 43.6
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TA-------------------------ATAATATTAAAACCCTTATTCTAAAATAATAAAC--CATTACTATAATAATTATAA-AAGCTTTAATTTTTTTTTTTAAACAGTGGGAGCT-ATAT
SizeHit CountTotal Norm
604 scf7180000491258:19132-19243 - 43.39
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTT-ATTTTGTTTTGCAATCA-----AAGACATCTTTCTT
TTTGCTCTTTAGCTTTTAA---ATGTAATTATAACCGTCTAAACATAGAAAAGCTA-----------ATGACGGGGTGTATGTAG---CTGTAGTATTTGTGAGCAGTCATCGCCGAAATGTCTTTATC
SizeHit CountTotal Norm
5 scf7180000486445:879-1011 + 43.23
TTTATACATTTGTTTATA-A--TGCACATAATAAATGCCAACCATTCATC-ATGAAATTATAAA-TAGTATCATTTCAAG------------ATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTCCTAAGTTTAAATATATATCTACACTCAGGAAACCTAACTTATTGATTTA---A-GGAAAAATTGCAATAATTTTAGGAATATTTTCCTTATTTAATATAAAGGTTAATT--GTT-CTTAAATAAAGGAATTTTGTTT
SizeHit CountTotal Norm
238 scf7180000491104:1057659-1057761 + 42.9
TTTATACATTTGTTTATAATGCA-CATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTAT-TTTGTTTTGCAATCAAAGACATCTTTCTT
TTTTCACTTTATTTAACAATGGAATGGAATAATAGCCGACCT----TTATGAAGTTACATA--GCGCT----GTAGTCGAGTGTCCCGACTTTAAGATTGTTATATAA------------CCGTT
SizeHit CountTotal Norm
149 scf7180000490751:1220344-1220453 + 42.66
TTTATACATTTGTT-------------------------------------TATAATGCACATAATAAA--------TGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTTTGTTTTCTTTGTCTATGTAAATTGAACATTCCTCGAATGAAACCAATTTATATGTATATAATAAACAAATATTTACAAATTAT----------------------------------------------------------TTACAATTAAATTAACTATTTTT
SizeHit CountTotal Norm


droRho1 - 721 hits found

Lastz ID Coordinate Normalized Identity % Sequence RNAfold UNAfold
1770 scf7180000776225:2196-2314 + 56.31
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATT-TCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TATATTAAGTTGTTG---AGGCAAATATTAAGTACGTTGAAAAGTACAAGAACTTGCAATT--TATCATTATTAAAACAAAAGTTAACATTTTGTTTAATATAACAAGCAAGGAAAGCTAACTT
SizeHit CountTotal Norm
5892 scf7180000778882:20152-20273 - 55.45
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGA--TGCATGGTAAGGCTTTATTT-TGTTTTGCA-ATCAAAGACATCTTTCTT
TTGAT-CATTTCGTGGTTGCGAACATAGCAAATGAATGTCGAAACTTATAAAACGA----TTATATTATTTTATAATATGGATAATGTAGCTTTATATAGGTTTTACACACTGAAGTTGTTGTTTTT
SizeHit CountTotal Norm
4134 scf7180000769354:1242-1347 - 54.04
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGA--AATTATAAATAGTATCATTT-CAAGATGCATGGTAAGGCTTTATT----TT-GTTTTGCAATCAAAGACATCTTTCTT
----------------------ATATGTCAAATTCAAATTATTCAT-ATGAATAATTTTGAAGAATATAATTTACAGAATATTCTGCAAGGGTATATTAACTTTGGCTC--CGCCCAAAGTTAGCTTTCCT
SizeHit CountTotal Norm
4639 scf7180000773299:1434-1546 - 53.91
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TATATTTATATATATATATATTTCATAATTAAAAC----AATGTTTAAAAAAATTATATATATATTTTTTTTGTTTT----GATTGGATTTTTTTTTGTTTAGTG--CGAATATATATTTGTA
SizeHit CountTotal Norm
5870 scf7180000778773:1789-1909 - 53.85
TTTATACAT--TTGTTTA--------TAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGC---ATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTCATTAACAACTGGTTTGATTTAAATTATTT-------AAATTTTAAATTAGAATCATTGAATTAT---TAGAAATGTTTTAATATTTCCGTTTTTATTTATTTATCATGTTTTGA-----ATAATTTTTTAATT
SizeHit CountTotal Norm
870 scf7180000769118:8853-8975 + 53.8
TTT-ATACATTTGTTTATAATGCACATAATAAATGCCAACCAT-TCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAA-TCAAAGACATCTTTCTT
TTGTCTACATTGG--TGTAAGGTATATTATTAATTTTAGGGGTGCCATTAAGAGTTATTAAATATAACCCATTTAAT-TGAGTGTCATTAACTGTTCTTGTCCATTTACAAAAATGAATCCATTTT
SizeHit CountTotal Norm
1101 scf7180000771278:3446-3568 + 53.73
TTTA---TACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTA----AGGCTTTATTTTGTTTTG--CAATCAAAGACATCTTTCTT
TGTAAAGTATAATTCTTTAAAATGTATTTAATTAGTATTACCTCA--ATC--AAAAATGTAAATTATCTAA-TACACACTGTGTAAAAGGAGCAAAATTACTTTATTTTAAACAATTC----AATTTATATT
SizeHit CountTotal Norm
2145 scf7180000777422:2673-2789 + 53.63
TTTATACATTTGTTTATAATGCACATAATAAAT-----------------------------GCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TCTATTAATAGGTTTATGATTC-CATATTGAATTTTTTCGCATTCATCTATAATGTTACCTAGCTGTTTAGTTATTATAAAAAAGTTGATAAACTCATTTTAC------------------ACATTTTCTTGCAAT----------------
SizeHit CountTotal Norm
2035 scf7180000777061:2725-2845 + 53.49
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTAT-----TTTGTTTTGCAATCAAAGACATCTTTCTT
TTCATGATAGGGGTTTTTA--TATACAACAAGTTTTAGCTTGAAAACTCAAAA--AAAAATAGT-TCATTCCGTGAAGAAAG-TGAGTTTGTGTTTAAGAACATTTTGACTTC-ATGTTAACGTTCTC
SizeHit CountTotal Norm
6542 scf7180000780259:11183-11302 - 53.46
TTTATACA-TTTGTTTATAATG-CACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCT---TTCTT
TTTATTATTTTTTCCTATAATCTCAAATCTTGACTCTCTGCCGCTC---TTAAAACGATTAATACTAGCA---CAAAATTGATCTTACTA--TTACTTTTTTCCCCGGACTTTTACTTCTATTTCCTT
SizeHit CountTotal Norm
2366 scf7180000777992:16907-17015 + 53.41
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTATTC--TTGGCTA-AATCCTTGCAGTGATTATAATTCATGCTCTCTGTTATTCTAAATAGCACCAATTTTAATTTCCTCCTAAGGCCTCATTTT-TTCCCTAATCCAAGA----------
SizeHit CountTotal Norm
1901 scf7180000776839:11249-11371 + 53.38
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCAT------TTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TCTAAAAATCTGTTTAGGGGTTTGGCAATGGACGCGTA--ATTTTTTACGAAATTTC-TATAGTATCCTGTGAGACTCAGGAAGCTACGCAGCTCTCTGATATTTTTGGGAATTCAAGATATCC---TG
SizeHit CountTotal Norm
3346 scf7180000760581:545-673 - 53.2
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCA---TTCATCATGAAATTATAAATAGTATC-----A-TTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
ATAAT-TATTATTTAATTATATAAATTATTAATTCATAATTATAATTACTATTTAATTATAAATATTATTTAATTATTTCCAAAAAGCAAAGTAATTAATTTA--TTTAATGGATTAATTAATTTATTTTTA
SizeHit CountTotal Norm
5878 scf7180000778828:8530-8649 - 53.1
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATT---ATA-AATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTA--GAGTACTTTGTAATGAATATAATAGA-----ATCTTATATCATTAATTTGATCTCACTTCGTATGTGATTCGTATGTATTCTAACTTAGTCTGTTGTTTTTCACTTCTCGCGATTTTGTTT
SizeHit CountTotal Norm
1755 scf7180000776138:3898-4017 + 53.05
TTTATACAT----TTGTTTA--TAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCAT-TTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
AATATAGATCGCTTTGTTTTTGTTTTAATCATAGTATATCCAAATCTA------TAAAACTTT-ATTGAAAT-ATTTTTAAATTTAAT-CAAGCAGTTTTATATATTTTGTATTAAAAGTTATGTTT-TT
SizeHit CountTotal Norm
1919 scf7180000776854:20851-20968 + 52.98
TTTATA---CATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAAT-TATAAATAGTATCAT---TTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTAAAATGTAATAATGTTGGAAGCTTATAATGAATGTCAAGCATTAAATATGAAATTTATGAATGCTGAAATAAATTC-----GCAT------TTATTATTACTTTTTTCT-ACGGAAACATTTACTAA
SizeHit CountTotal Norm
4250 scf7180000770352:547-663 - 52.95
TTTATACATTTGTTTATAATGCACATAATAAATG---CCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGT--------AAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
AATGCACATATGCCG---GTGTAT-----AAATCCATCTAACAATAAATCACAAG-ATACATATATTATCAATATAAAAATCACTAACATACCCCAAAGC------TTTATTTGCAAT--AAGGTGTTTTTATC
SizeHit CountTotal Norm
6078 scf7180000779410:201314-201432 - 52.89
TTTATACATTTGTTTATAATGCACA--TAATAAATGCCAACCATTCATCATGAAATTATAAATAGTA-TCATTTCAAGA-TGCATGGTAAGGCTTTA--TTTTGTTTTGCAATCAAAGACATCTTTCTT
TATTTACA----------ATGCGCAATTTATAAATTGGTGACAATTAGCGTCAAATCGTAAATGATAAACGCTTTATTACTGCTTGGAATTTCCCTAACCTTTGCGTGCCAAATAGGCGTGACTTAAAT
SizeHit CountTotal Norm
1521 scf7180000774556:5761-5883 + 52.79
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACC-------ATTCATCATGAAATTATAAATAGTATCA-------TTTCAAGATGCATGGTAAGG--CTTTATTTTGTTTTGCAATCAAA--GACATCTTTCTT----
----------------------ACATATTATATGTTAACTTTATTGCTAACATCACAAATTAATATATATTTTTATAAAACTATTTAAATTTAATTATAAAGTACATTATTCTCTTTTTAAAATAAATTTACAACATTCATATTA
SizeHit CountTotal Norm
2344 scf7180000777950:15823-15943 + 52.38
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAA-TAGTATCATTT--CAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTTTTCATTCGCCTGATATTAAAACTAAAAATGTCGTCTATCTTTAG----AAGATAAATCCGATTTATGGCGGACGATTTATGATTGAACGTAGGTATGTTTTTTACCCAAGAATTTA-CTTCT
SizeHit CountTotal Norm
2482 scf7180000778307:33832-33959 + 52.36
TTTATACATTTGTTTA----TAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATC----ATTTCAAGATGCATGGTAAGGCTTTATTTTGTTT--TGCAATCAAAGACATCTTTCTT
TTTAACATTTTGTTAACATATAATATTAC-ACCACAGTATATCGATTGAGTACGAACATA----TAGTATTAAAAGTATAGAGCTACTTTGTGAAATGTTCTTTTGTTTTCTGTATGGAAAGTTGTTTTAATT
SizeHit CountTotal Norm


droKik1 - 21 hits found

Lastz ID Coordinate Normalized Identity % Sequence RNAfold UNAfold
58 scf7180000302517:216660-216785 - 52.85
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGC--ATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACA--TCTTTCTT
TTTATATTATAAATTATAATGCCGAAAACAGACACTAAACAGATAACATAACATTTTACCTATACTTATTACCATATGTTTACAGTTTGACAGT-TATAGTTATACATTCACAGCTTTACATTTTCT
SizeHit CountTotal Norm
63 scf7180000302657:116239-116356 - 52.63
TTTATACATT--TGTTTATAATGCACATAATAAATGC--CAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TGTTTATATTATAGATTTAAATGCTGAAAACACTCACAACAA-CCTTAATAAGTATAGGTTTGACAGTTACAGTTTTACATTCCCA-----GCTTTA---CATATTGTATACATTTACCGATCGCTT
SizeHit CountTotal Norm
33 scf7180000298004:7697-7818 - 49.59
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCA-----------------------TTCATCATGAAATTATAAATAGTATCATTTC-AAGAT-----GCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTAATT-----------ATGTA---AATAAATGGTAATTAAAAAAAATTGTTTTCAAACTAAATTTATTCTGTCCTTAACAATGAAAACAATTTTCAATTTCATAAAATGTTAAAGTT----TTTATTTTGCAAT------------TGTT
SizeHit CountTotal Norm
26 scf7180000297926:208873-208982 - 48.04
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
AGTGCACATTTT-TTACCATAATCGTTATACCCTCAAATCGGTCA-------GTAAACCATACTAATATTTTAAGCTTTTT---TTGTTTTTGTTATATTTCGTAA--AAAGCTCTCTCACTT
SizeHit CountTotal Norm
17 scf7180000302666:118450-118563 + 47.84
TTTATACATTTGTTTAT-AA----TGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTTTTCATTGGCTGAGCAATACTTGCAGACGATTAAT-----TTATGCATTGTAAAAGTACATATGGTAT--ATACAAGGAACACGTCTTTTTTTAAATAAATTATGCATACAGAGATAT-------
SizeHit CountTotal Norm
3 scf7180000302272:875565-875676 + 47.77
TTTATACATTTGTTTATAA-----------TGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGT------------------AAGGCTT--TATTTTGTTTTGCAATCAAAGACATCTTTCTT
GATAGAAAAATGATTAAAAATAACCCTTTGTTCACATAATAAATTCCTGCA-----TA-------------------------AGGTTGAATTTTACGTTTAATATTTTTCAAAGGTATTTATGTTTTTTTGTTCGATAAAA------------
SizeHit CountTotal Norm
59 scf7180000302517:648453-648575 - 47.37
TTTATACATTTGTTTATAATGCACATAATAAAT----------GCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTT-TATTTTGTTTTGCAATCAAAGACATCTTTCTT
TCTCTACATCTACGGATCGCCTCTATGGCAGCTATATGATATAGTTGTCCGATTTTCATAAAATTAATAC---AAAAATTCTATAATAATAAGTAAAGCTCATATCTCAT-----ATCT---CATATCTCGTTC
SizeHit CountTotal Norm
24 scf7180000302706:49346-49471 + 47.28
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAA------TTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TACT---TTTTAATAATAATAAAAATATTCCATATCAGTCTTTTAATGTAAACGATTCACAGTGCGAAACATAAAACCAAACTATACTTTTAGGCGAAATCTGCTTCTCAGTTGAAAGATATATTTAAA
SizeHit CountTotal Norm
44 scf7180000302272:875990-876106 - 47.26
TTTATACATTTGTTT--ATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTATTTATTTATTTTTACGAAGAATACAGT--TCTAAGACCAACAAATATTAAACTTTATGCAGTTTAGTTTTTTTATGTTAGCCAAGCTCTTT------AAAATGATTTTGTACAACGTTTTC
SizeHit CountTotal Norm
1 scf7180000298004:7530-7632 + 44.45
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAA---------ATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTATTTTTATTCTTAT-TTGTAAAATATATGTACTTAAAATTCATTTTGGTAAGAACTCAATATTTAATTATATATTATTGAGATACAT---------TTATGATGTTTTAC-------------------
SizeHit CountTotal Norm
30 scf7180000297977:9305-9436 - 44.16
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAA------ATAGTATCATTTCAAGATGCATGGTAAGGCTTTAT---------------TTTGTTTTGCAATCAAAGACATCTTTCTT
TAGATATAAATGTTGAAAACACTCACAAAACAGA--------GTTTCATTAAAGTTTACCTATACTTATTATGTTTACAGTTTGACAGTTACAGTTTTACATTCCCAGCTTTACATATTTTATACAATTACCGAT----CGCTT
SizeHit CountTotal Norm
62 scf7180000302656:4021-4134 - 43.82
TTTATACATTTGTTTATAATGCACATA-ATAAATGCCAACCATTCATC------------------ATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
ATTTTAATTCTGGTCAATTTTAATATTCTTTTTAGCTAATATCTCGTAAGTTACTCTAATAATATTTAGAAAA----------------------AGAAAGGAAA---ATAACTTCGGCACG---CCGAAGTTTGTATACCC
SizeHit CountTotal Norm
14 scf7180000302471:1559987-1560079 + 40.74
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAA-TTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTCATCCTTTATTTTATATAGAAACTAAATGTATATACCCCTAATTATATAAATTAAAAAGAAGTTTATTCAA--CTAA-----------------------------GGGGCTTTATGTCGT
SizeHit CountTotal Norm
12 scf7180000302471:1559587-1559720 + 40.7
TTTAT---------------ACATTTGTTTA-TAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
CTTTAAAAGTAAAAAATAAAATGTATGTTTGATAATGCTAGTAACCGGGGCTTTAAGATAAAGGCGAGATAGTAGTAGATGACATACTTAATCCAATAACTTGGCCATGTTTTAATT-----ACGGAAATATCTTTTTC
SizeHit CountTotal Norm
10 scf7180000302471:1559233-1559380 + 38.73
TTTATACATTTGTTT-ATAATGCACAT----------AATA----AATGCCAACC-----ATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATG----------GTAAGGCTTTATTTTG--------TTTTGCAATCAAAGACATCTTTCTT
TTGATGCTTTCTTTTTAAAATTAACTCCACGCCAAGGAAAAAGCTTAAGCAAACAACACGTTGAATCATCGAGTT--AAGCAGAGCCAGTTAAAAATATATTCATATAAATGAAAA-------TTCTGTTTACATGGACTACATTCTAA----ATTTTACT
SizeHit CountTotal Norm
15 scf7180000302544:1522551-1522695 + 38.39
TTTATACATTTGTTTATAATGCACATAATAA-------------ATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAAT---------------CAAAGACATCTTTCTT
TTTTTCAAAATATTTTTCTTTGAGATAAAAACTTTAAAACTTAAGTGTCAAAATATAAGAATTAATCAATAAATAGTTTTGGGTAAAAAAGTA------ATTTTCCTTATGGTTTAAAGTATAACCGAAAACAACAAATTAAATATTTTTA
SizeHit CountTotal Norm
19 scf7180000302666:119314-119394 + 35.86
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT-----
TGTAAAGAATCGGTTATGCTTTAAGTTATCA---------GATTACGAAAAAATTATGAAA--------------------------------------TATTTAACAAAAAAAATTTTTTTTTAAGA
SizeHit CountTotal Norm
70 scf7180000302698:217282-217446 - 34.05
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAA--------------------TTATAAATAGTATC------------------ATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTT--------GCAATCAAAGACATCTTTCTT
TTTATACATTAAATGTTAATATATTTAGTAATT---AATATTTTATTTTGAAAAGACGTGATGATGGAAGACTTTAAAAAGATT-TTAAAAGGCCTTTAAAAAGGCTTTAAAAATGCTTAGTACATTTTTAGTACATTTTCGGTACATTTAATATTAAATATTTTAATT
SizeHit CountTotal Norm
42 scf7180000301880:4763-4855 - 32.94
TTTATACATTTGTTTATAATGCACATAATAAATGCCA----------ACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TCTCTACATTTACCGATCGTTCATATGGCAGCTATAAGATATAGTCGTCCGATTTTCATAAAATTTTAAACAAAATTCT---AAAAT---------------------------AATAAAAGA----------
SizeHit CountTotal Norm
54 scf7180000302461:1087116-1087185 - 32.23
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCAT-----CATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTTTAAATACGTCCTTAATTTTAAAAGTAAAAAAACACACCTAATTTGTACATGGAATTAAAAAAAGCA----------------------------------------------------------
SizeHit CountTotal Norm
5 scf7180000302307:356248-356256 + 4.96
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTTTGTAT------------------------------------------------------------------------------------------------------------------
SizeHit CountTotal Norm
None None


droAna3 - 20 hits found

Lastz ID Coordinate Normalized Identity % Sequence RNAfold UNAfold
44 scaffold_13340:2198726-2198841 + 50.98
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTC--AAGATGCATGGTAAGGCTTTATTT-TGTTTTGCAATCAAAGACATCTTTCTT
TTAATAATTTTATTTATCGAACTAATTAGGC--------TTTTCATACAG-ATTTAAGCTTAATATTAAATTATAGAGCACTGGCTGCGGTGGTATATATATTTTTCAA-TAAACACATTTTTATG
SizeHit CountTotal NormV105
Male body
V106
Head
V055
Unknown
V039
Embryo
..............................................................................................ATATATxTTTATCGA-TAAA............1811.000.000.000.001.00
.....................................................................................TGCxGTGGTATATATATGTTT....................2011.000.000.001.000.00
45 scaffold_13340:3059605-3059715 + 49.82
TTTATACATTTGTT-TATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTAAACATTTTTTTTTTAATATAACTACTTAACTTT---TTTGTAACCCAACATCATATGAAAAATAATTTACAAATTTGCAATATTTTGTTATTTATTTCTTAAAATAGAGA----------
SizeHit CountTotal NormV105
Male body
V106
Head
V055
Unknown
V039
Embryo
........................................................................ACAAATGTGCAACATTTT..................................1811.000.000.001.000.00
111 scaffold_13337:21448035-21448155 - 49.61
TTTAT-ACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCT---TTCTT
CCGGTGACATTTATTTGGGAGTCAGATGGGTAACGCGAAATGTT------TGATTAAAAAATAGTTGTACTAAAAGTTAAATTTCTCGTCCTCATCTTAAATGTTAACAAAATTAATGTAATAACTT
SizeHit CountTotal NormV105
Male body
V106
Head
V055
Unknown
V039
Embryo
.........................ATGGGTAACGGGGAAT......................................................................................1611.000.000.001.000.00
.........................ACGGGTAACGCGGAAT......................................................................................1611.000.000.001.000.00
14 scaffold_12929:1474253-1474366 + 45.09
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATG--AAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
CTTTTATCTCTGAGAAAGCCAAATCCACGAATT---GGCTTTCCGCCAAAAAAAACAACAATGTTTAATTAATCAAAGGGCTGAGGTTGCCTTTTGTTTGCTTGTTAATTGAAAACA--------
SizeHit CountTotal NormV105
Male body
V106
Head
V055
Unknown
V039
Embryo
......................................................................AATCAATGGGTTGAGGT......................................1711.000.000.001.000.00
...............................................................................................GTTTGCTTGTTTAATGAA............1811.000.001.000.000.00
...........................................GGCCAAAAAAAACAAAAA................................................................1811.000.000.000.001.00
..............................................................GTTTAAxTAATCAAAGGGA............................................1811.000.000.001.000.00
93 scaffold_13260:1454475-1454614 - 44.75
TTTATACATTTGTTTATAATGCACATAATAAATG---CCAACCATTCATCATGAAATTA--TAAATAGTATCATTT----CAAGA---------TGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TCTGATCGTTCAGTTATATGGCAGCTATTGGATATAGTTGGCCGATCCCTATGAAATTTGTCAAATAAGATTATTTTGCCCAAAATGGAATCTGTACCAAGTCTATCTGTATCTTGGTACAGAATCTGTACCATCTTTCT-
SizeHit CountTotal NormV105
Male body
V106
Head
V055
Unknown
V039
Embryo
.................ATAGCAGCTATAGGATATAGT.......................................................................................................2190.670.000.670.000.00
..........CAGTTATATGGCGGCTATTGG..............................................................................................................2170.710.430.290.000.00
..............................GATATAGTTGACCGATCCCGA..........................................................................................2122.500.002.500.000.00
....................GCAGCTATAGGATATAGTCGGCC..................................................................................................2380.500.000.500.000.00
.................ATGGCAGCTATAGGATATAGT.......................................................................................................2190.440.000.440.000.00
..........CAGTTATATGGTAGCTATAGG..............................................................................................................2190.440.330.110.000.00
..........................ATAGGATATAGTTGACCGATC..............................................................................................2170.570.140.290.140.00
..................TGGCAGCTATAGGATATAGTCGGC...................................................................................................2480.380.000.000.000.38
TCCGATCGTTCAGTTATATGG........................................................................................................................2121.501.000.500.000.00
..........CAGTTATATGGCAGCTATAGG..............................................................................................................2190.330.000.330.000.00
..................TGGCGTCTATTGGATATAGTTGG....................................................................................................2313.001.000.000.002.00
................TATGGCAGCTATAGGATATAT........................................................................................................21110.270.000.270.000.00
.............................GTATATAGTTGGCCGATCCTT...........................................................................................2170.430.000.430.000.00
.........................TATAGGATATAGTTGACCGATC..............................................................................................2270.430.290.140.000.00
70 scaffold_12943:1342537-1342667 - 44.42
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGC-----------------TTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TG---------GTTGACATGATGCGTAAAAAGTGCGAAAAAATAAATATAGAATTATAGAGACTCTTCTTATAGAAGACATGGTACTACTACTCAGGTCAATTGCTATTTCTTTGATTGATGATTAAAACTAACTTGTAA
SizeHit CountTotal NormV105
Male body
V106
Head
V055
Unknown
V039
Embryo
..............................................................................................................CTTTGATTGATGATTCGA............18145.001.0041.003.000.00
..............................................................................................................CTTTGCTTGATGATTAGA............18145.000.0041.002.002.00
..............................................................................................................CTTTGCTTGATGATTCAA............1815.000.005.000.000.00
.G---------GTTGACATGGTGAGTAA................................................................................................................1812.000.002.000.000.00
..............................................................................................................CTTTGCTTGATGATTAGAA...........1911.000.001.000.000.00
............TTGACATGGTGAGTAAAA..............................................................................................................1811.000.000.001.000.00
..............................................................................................................CTTTGCTTGATGATTAAC............1811.000.000.000.001.00
.........................................................................................................TAxTTCTTTGCTTGATGATT...............1911.000.001.000.000.00
...........................................................................................................................................T2620.500.000.000.000.50
.............................................................................................................CCTTTGATTGATGATTCAA............1911.000.001.000.000.00
.............................................................................................................TCTTTGATTGATGATTCGA............1911.000.001.000.000.00
..........................................................................................................................................AT2720.500.000.500.000.00
..............................................................................................................CTTTGCTTGATGATTACA............1811.000.000.001.000.00
..........................AAAAAGTGCGAAAGAAAAA...............................................................................................1911.001.000.000.000.00
..............................................................................................................CTTTGATTGATGATTAGA............1811.000.001.000.000.00
............................................................................................................TACTTTGATTGATGATTAGA............2011.000.001.000.000.00
..............................................................................................................CTTTGATTGATGATTCCA............1811.000.001.000.000.00
118 scaffold_13340:2082618-2082730 - 43.39
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTA--------------TAAATAGTATCATTTCAAGATGCATGGTAAGGCTTT----ATTTTGTTTTGCAATCAAAGACATCTTTCTT
CTCATAAAATACCTTTTATCACA---------------------------ACAATTTTATTTTTGCTGTCTTATTATTATAACACCAAACCTTATACAAATATTTTTTTTAAATTATCGCATAAACAAAAAGGTT-TTCTT
SizeHit CountTotal NormV105
Male body
V106
Head
V055
Unknown
V039
Embryo
50 scaffold_13340:5734314-5734449 + 41.35
TTT--ATACATTTGTTTATAATGCACATAATAAATGCCAACCAT---TCATCATGA-AATTATAAATAGTATCATTTCAA------------GATGCATGGTAAGGCTTTATTTTGTTTT--GCAATCAAAGACATCTTTCTT
GTTTATTGAATTTTTGTATTATGTTAATACTAAATGTAGAACACCATTAAAAAGAAGGGTTGGGAATAAAACATTTTCAATTAAGTGTGTAAAAGAAATGGGAAAAACAT-------TTTAAATACTAAATTTAATTTAACTT
SizeHit CountTotal NormV105
Male body
V106
Head
V055
Unknown
V039
Embryo
..........................................................................................AAAAGAAAAGGGAAAAAG...................................1820.500.500.000.000.00
................................................AAAAAGAAGGGGAGGGA..............................................................................1711.000.000.001.000.00
......................................................................................GTGTAATAGAAGTGGGAAA......................................1911.000.000.000.001.00
...............................................................................ATTAGGTGTGGAAAAGAA..............................................1811.000.000.001.000.00
122 scaffold_13340:5749382-5749522 - 40.17
TTTATACATTTGTTTATAATGCACATAATAAATGCC--------------------AACCAT----------TCATCATGAAATTATAAATAGTATCATT---TCAAGATGCATGG---TAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTAATAATCTTATACACAAGCAGCACTACACATGCTTTATTTGTTTTATTTTTCTTAACTATATAGCTTATGTAGTCAGAACTTTAAAAATAGTTTCCTTATATATGGAGGTATGTTTTCAAGGGTTTATCTATTTATACA------------------
SizeHit CountTotal NormV105
Male body
V106
Head
V055
Unknown
V039
Embryo
...ATAATCTTGGACACAAGC..........................................................................................................................................1811.000.000.001.000.00
40 scaffold_13337:21447574-21447676 + 37.37
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTAT-----AAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
CATGTTA-ATCGATGTTAAAGTGAATATTGA--------------------AATAAAATTCAGAAAAGTGTTA----TAGTTTTTTGGGAGTCTCATAGTTTTTATAGTTTTATAGGACGTTCTATTA
SizeHit CountTotal NormV105
Male body
V106
Head
V055
Unknown
V039
Embryo
............ATGATAAAGAGAATATTGA--------------------.............................................................................1911.001.000.000.000.00
...................................................................................................TTTTTACAGTTTTATTGGA..........1911.000.000.000.001.00
...........................................................................................................GTTTTATAGGxCGTCCTA...1711.000.000.001.000.00
42 scaffold_13340:2197998-2198137 + 36.72
TTTATACATTTG-TTTATAATG--CACATAATAAATGCCAACCA---------------TTCATCATGAAATTATAAATAGTATCATTT---------------------------CAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TGCACGCAATTCATTTTTATTGACCGGTGTATCAATGTCAACTGAGCTCACAAGCTTGTTTCATCGTCGATTCAAATGCAATTGCATTTTCTTACAGCCACCTATTAATATCGATTTAATG---------A------ACCTGGTTTTATGATCAT-------------
SizeHit CountTotal NormV105
Male body
V106
Head
V055
Unknown
V039
Embryo
..........TCATTTTTAGTGATCGGT............................................................................................................................................1816.001.005.000.000.00
48 scaffold_13340:3059952-3060032 + 32.77
TTTATACATTTGTTTATAATGCACATAATAAATGCC---AACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTT--------------AATGAATATAAAAAATACTTTTTCCTACCCAAACTACAAACATAAATAAAATGAACTTTTAAAGC-------------------------------AGGTATACTTTTA
SizeHit CountTotal NormV105
Male body
V106
Head
V055
Unknown
V039
Embryo
...............................................AAACTTCAAACATAAAGAA............................................................1911.000.000.000.001.00
94 scaffold_13266:1961017-1961078 - 27.65
TTTATACA-TTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
CTTT-ACTTTTGAATTGTATTTAACACTGGAAATCTATAAATTCTCTACCTAAACTATATATA-------------------------------------------------------------
SizeHit CountTotal NormV105
Male body
V106
Head
V055
Unknown
V039
Embryo
116 scaffold_13340:2082307-2082359 - 24.25
TTTATAC-----ATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTAAATTTACTAAATATTTATAAAACT---AAATAAAATAAAACATTATTCGTGA------------------------------------------------------------------------
SizeHit CountTotal NormV105
Male body
V106
Head
V055
Unknown
V039
Embryo
......................AAAACT---ATATCAAATAAA.....................................................................................1811.000.000.000.001.00
.....ATATACTACATATTTATA.........................................................................................................1860.170.000.000.000.17
...............TATTTATAAAACT---GAATTA...........................................................................................1911.000.000.000.001.00
61 scaffold_4139:842-890 - 20.66
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTGTAAGGATCTTTGAAATACATTGGTCAGTTACTAAATATTTTTGAT--------------------------------------------------------------------------
SizeHit CountTotal NormV105
Male body
V106
Head
V055
Unknown
V039
Embryo
............TTTGAAATACATTGGTCAGTTACTAAA....................................................................................2711.000.001.000.000.00
....TAAGGATCTTTGAAATACATTGGT...............................................................................................2411.001.000.000.000.00
..TGTAAGGATCTTTGAAATACATTGGT...............................................................................................2611.000.000.000.001.00
99 scaffold_13266:19686856-19686894 - 19.01
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TATATATTATGCGTTCTGTTTTAAATAACACAGGCCAAC------------------------------------------------------------------------------------
SizeHit CountTotal NormV105
Male body
V106
Head
V055
Unknown
V039
Embryo
96 scaffold_13266:1961478-1961509 - 15.7
TTTATACATTTGTTT-ATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTTCATTTCAATTTAGTAATTTGCTTAGTAA--------------------------------------------------------------------------------------------
SizeHit CountTotal NormV105
Male body
V106
Head
V055
Unknown
V039
Embryo
37 scaffold_13337:13196929-13196945 + 9.92
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TATTTAAATTATTTTAT----------------------------------------------------------------------------------------------------------
SizeHit CountTotal NormV105
Male body
V106
Head
V055
Unknown
V039
Embryo
None
107 scaffold_13337:13197248-13197263 - 9.92
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTAATATTTTTATTTA-----------------------------------------------------------------------------------------------------------
SizeHit CountTotal NormV105
Male body
V106
Head
V055
Unknown
V039
Embryo
None None
53 scaffold_13340:15499319-15499334 + 6.61
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TACACAAAACCATTTA-----------------------------------------------------------------------------------------------------------
SizeHit CountTotal NormV105
Male body
V106
Head
V055
Unknown
V039
Embryo
None None


droBip1 - 53 hits found

Lastz ID Coordinate Normalized Identity % Sequence RNAfold UNAfold
352 scf7180000395023:6052-6160 - 54.69
TTTATACATTTGTTTATAATGCACATAATAAATGCCA-ACCATTCATCATGAA-ATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TATATATATATATATATAATATATATA-TATATATAATATAATATATAATATATATATTATATTATAATATTTCAGCATACATTTTAAA--TTTATTTAGAAATGAGATTAA-------------
SizeHit CountTotal Norm
91 scf7180000395064:10042-10152 + 51.46
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCA---TGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TATTTATATTTGTTTTGAACACAC--AATAAAAA----AGATTCGTTAGGTTCAAAGCCTATACAAGACTTTTT------TTACAACAAATTTTTTTTTTATTTTTAAATGAAAAAT---TTTTTT
SizeHit CountTotal Norm
100 scf7180000395167:1104-1221 + 50.31
TTTATACATTTGTTTATAATGC---ACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTCCTAAGTGCCTTAATAATAATGTTGAAGAAAAATTTAAAAAAATCGTATTATTATTAGTTAAAATTCAAGTTTAAAATGAATTGCAATGACGTTTTTCATTTTGCAA--------AGAATTAGT
SizeHit CountTotal Norm
251 scf7180000391599:20937-21060 - 50.29
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGA--AATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGT-------TTTGCAATCAAAGACATCTTTCTT
TTTATACT-----ATATATAGTATATAGTATATATATAGTATATATAGTATATATATATATATAGTATA---TATATATATATAGCGCGGATATGCTACGATCCCAAGTTCTAAATGAGATAGTTCTATCTT
SizeHit CountTotal Norm
493 scf7180000396708:3079796-3079910 - 49.16
TTTAT--ACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAG--ATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTAATTTAATTTTTTAATCACAAAAACGCAAAAACCTAGCTTTTAACTAAGGGATTTAAATAAAAAATGTTTATAATCTAGTGAGTTAAAAAGTAAATTCGTTTTTAAGATAAA------------
SizeHit CountTotal Norm
416 scf7180000396025:13964-14068 - 46.66
TTTATACATTTGTTTATAATGCACATAAT-AAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTT--------------TCTT
TATATGAAATATAATATTATATATGAAAATAAATTAT-AACATATGATATTATATTATACATACA--TATATG------------------------------AAAATTAAAAATAACATAAATTTTCTTTTTGATTT
SizeHit CountTotal Norm
198 scf7180000396589:834406-834524 + 46.59
TTTATACATTTGTTTATAATGCACATAATAA-ATGCCAACCATTCATCATGAA---------ATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
CTTGTATTTTTTTATTTAATAAATATTCTTTATTAACAATGGTTTTTTTTAAACTATTTCTCACTGTATAAAATATTTTTTGAAGATTCGCTAT--------------CCCTTAAGTGGAATAATACTTTATT
SizeHit CountTotal Norm
501 scf7180000396712:2144502-2144618 - 46.5
TTTATACATTTGTT---TATAATGCACATAATAAATGCCAACCATTCATCATG-----AAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTGTTATATACATTATATTTTCTTAACCCATTAAAACTTAACCTGTAATAACTTAGTTTAATAAAATATATTACTAGTTAAAAATTATTGGAAAGAAACTGTTT-GAAGAC-------------CTAGCAA
SizeHit CountTotal Norm
103 scf7180000395217:2037-2135 + 45.9
TTTAT----------------------------------ACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
ATCAGATTTACAGACAAGAAAAGAAAAATGAACATATACATA-----------------------------ATTATTTACTATGAA-----------------------------TATAAGTTTTAATTTTGTTTTTTAGGTAAACAAAAATTTGTT
SizeHit CountTotal Norm
316 scf7180000394221:6907-7039 - 45.83
TTTATACATTTGTTTATAATGCACATAATAAAT---GCCAACCATTCATCATGAAATT--ATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACA-------TCTTTCTT
TCTGATCGTTTAGTTATGTGGCAGCTATAGGATATAGTCGGCCGATCCTAATGAAATTTGGTAGGTTGGATCAACTGACCAAAAATAGAA--TCTGTACTTAGTTCTATCTTCAAAAAGACGAAAGTTGGGTCAT
SizeHit CountTotal Norm
192 scf7180000396580:1111911-1112037 + 45.24
TTTA-----------TACATTTGTTTATAA--------TGCACATAATAAATGCCAACCATT----CATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
CTTAAGTGGAAGATGTAGGTTTTTTTATAGAGATAATTTACATGTATAAAATGGAATGGATTTCAACGTAATGGAATTTAATAAAATTTCTTTTTTAAAT------------TTAATTTATTTTTTGGATTAATAAGAT-------
SizeHit CountTotal Norm
413 scf7180000396015:6781-6888 - 44.24
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAA--------------ATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TATATATATATATTTAAAAAATAAAAACTAAATTCAAAGCGTCTGAAAAAAATACACAACATTTATGTAAAAAATAGTACGTTTTTGG-------GGGAAGATTTAATTCTATTT----------------------
SizeHit CountTotal Norm
368 scf7180000395221:6186-6319 - 44.16
TTTATAC-------------------------ATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTCAAATGAGGGGAAAATTAAACAATAAGATTAAATTGTAATAACAAAAAAATTAAACAATTAAGAAAAAACATTAAATTATAAAAAACAAAAATTCAAGATTTAAAATAATTGGTAATTTTTTGTAACAATAA--------------
SizeHit CountTotal Norm
212 scf7180000396708:3064710-3064816 + 41.97
TTTATACATTTGTTTATAATGCACATAATAAATGCCAAC-----------------------------------CATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TAACAACAAGTA----------------------GCAATACAAAGAAATATTTTATTTTAATAATTAATAGTTTAATCGTTCAAAACTTTAAAAATAGTATAGGTTAAA-----------GGGGTTTATCTCATTATACA------------------
SizeHit CountTotal Norm
223 scf7180000396712:2247981-2248080 + 41.66
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAG--ATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
CTCATTATT-TTTCAAAAATATAT--AA-----------------TATTAAAA--ATATTCAGCAACTTTTGAATAATTGAATGTTGATAGTTTTTTTCATTTTA---TTAAAAAATCTTTAATC
SizeHit CountTotal Norm
206 scf7180000396651:4536-4674 + 41.42
TTTATAC--ATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCA-------------TGAAATTATAAATAGTATC---ATTTCAAGATGC----ATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTATATTTATTTATTTTATATTCATATTGTATTTATCAAACTCCTATTGTCAAGGTTCACTTAAAAAATTTAATTATTTTCCCTAACTGAGGACAGATTGTAAATAAAACTTTAAAATGTTACAACAACAAAAAATTC------
SizeHit CountTotal Norm
221 scf7180000396712:2247608-2247744 + 40.86
TTTATACAT---TTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTA-TCATTT---------------CA-----AGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTTGACTTACATTCTTTAAAATACCTTTTACTTCTTCCAGTTATATCACAGGATACTATTATTTGCAAGCATTTAACTAAATATATATTTAAAATTTATGCCATGTATAGGATTTTTTTTATGTTATTAT----------TTTATT
SizeHit CountTotal Norm
502 scf7180000396712:2145285-2145388 - 39.86
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACAT---CTTTCTT
ATA-------CTTTTATTTTGCATGCAATTAATTTTTATTGATCGCTGTGACACAGTCGAT----CCATC-TCACCTGCATGTTTCATCGTTG-----------ATTCAAATGCAATTGCATTTTC
SizeHit CountTotal Norm
466 scf7180000396589:834621-834724 - 39.83
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCAT------CATGAAATTATAAATAGTATCATTTCAAGATGCATGG------TAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTT-GTAT------TAATTATATTTTATATATACCAGTTTATTGTTTAAATTTTCAAACTTTAAATG------------------TAGTTGCAGTTGGA------TCTTTTTCCAAGCCAAAAATTGTTTTCTT
SizeHit CountTotal Norm
337 scf7180000394825:7-93 - 38.39
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT------
ATTGTATATATGTATATATTAAATAT---------------------ATGAAATTGTATATA---------------------TGAAAGTATATTTCCATGTGGTGTCAAAAATATTTATCTTCTATTG
SizeHit CountTotal Norm
165 scf7180000396360:588358-588517 + 38.29
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCA---------------------------------------------TGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCT----------T
TATTTATATTTATATATTATATAAATAATATATATATATA------------TAAATATATGGTATTTTTATAAAATATAAATAAATATAAATATGTAATATATAAATATATATTACAATAAATATATCAA------AGTTGGTATTTCTACCAAAAACCATTTTCGATCATTCAGTT
SizeHit CountTotal Norm


dp4 - 14 hits found

Lastz ID Coordinate Normalized Identity % Sequence RNAfold UNAfold
72 chrXR_group6:912830-912970 - 41.73
TTTATACATTTGTTTATAAT-------GCACATAATAAA----------------TGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTATACCACGCACTAGATTGGGTTCTCCAGATAACGAATGTTGTCCAGTAAAATCCCAATCCATTCAAATGGATTATGTGACCAGTG-----TTAAGATGCGTCGAGGGCAGTCAGCTTGTGTTGCTATCTCGCTCCCCTCCGCC
SizeHit CountTotal NormV112
Male body
V043
Embryo
V051
Head
M022
Male body
21 chrXR_group8:6363531-6363638 + 40.76
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAAT--TATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
CTTTTAAAGCTATTTGGAAAGTTGTGACGTACTAAA----------------AGTATTTACATGATAGAATT-TAAACCAAATAATATAATTCTGTTTTGTTTTAGACTTCTTGTCAGTTTCGTT
SizeHit CountTotal NormV112
Male body
V043
Embryo
V051
Head
M022
Male body
37 chr2:18219658-18219805 - 37.01
TTTATACATTTGTTTATAATGCACAT------------------------------------------AATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGC--------ATGGTAAGGCTTTATTTTG------TTTTGCAATCAAAGACATCTTTCTT
TTTACACATATACATAGAGTCCTTTTGGTCGACTATAAAGTCAGGCATGTTTATCTATTTCTTATGTCAATG-------------------AAAACTAATAGAAATTTTATTTCAAGACCTCTTTGTTAAAAATACAACTTTATTTCAAGACCTCTTTACAACCAAA------------
SizeHit CountTotal NormV112
Male body
V043
Embryo
V051
Head
M022
Male body
80 chrXR_group8:6363793-6363862 - 30.11
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
AGTTAACGAAGGATTTTAATATACATAAGT--CTATGTTCGTTTATGGAGAAACCTTGAGCTCTAATATTTC---------------------------------------------------
SizeHit CountTotal NormV112
Male body
V043
Embryo
V051
Head
M022
Male body
...........................AGT--CTATGTTCGTTTATGGAGAA.......................................................................2311.000.001.000.000.00
109 Unknown_singleton_2584:1056-1107 - 26.45
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTATTTATTTTATTTATATAAAGCTAATAACTACTAACTACTAATAACTAA-----------------------------------------------------------------------
SizeHit CountTotal NormV112
Male body
V043
Embryo
V051
Head
M022
Male body
23 Unknown_group_93:26425-26462 + 23.14
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTACAAATTTGTTTATTCCAGAATCAATAAATGCCAA-------------------------------------------------------------------------------------
SizeHit CountTotal NormV112
Male body
V043
Embryo
V051
Head
M022
Male body
9 chr2:30139622-30139655 + 19.83
TTTATACATTTGT-TTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTTCAAATTTGATATACACTGAAGATAATCAAT------------------------------------------------------------------------------------------
SizeHit CountTotal NormV112
Male body
V043
Embryo
V051
Head
M022
Male body
39 chr2:22463252-22463286 - 18.18
TTTATACATTTGTTTATAATGCACA--TAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTAGAAAATGATTCACGCTCCAAAGCTAATAAAT------------------------------------------------------------------------------------------
SizeHit CountTotal NormV112
Male body
V043
Embryo
V051
Head
M022
Male body
74 chrXR_group6:8313695-8313724 - 17.36
TTTA-TACATTTGTTTA--TAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTAAATTAATTTGTATACAGAATGCACAGA------------------------------------------------------------------------------------------------
SizeHit CountTotal NormV112
Male body
V043
Embryo
V051
Head
M022
Male body
48 chr2:30006172-30006196 - 14.05
TTTATA--CATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTGTAAGAATTTATTTTTAAAGAA----------------------------------------------------------------------------------------------------
SizeHit CountTotal NormV112
Male body
V043
Embryo
V051
Head
M022
Male body
TTTGTATGAATTTATATTT..........................................................................................................1911.000.001.000.000.00
2 chr2:23742799-23742829 + 13.8
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTTG----------------------------GTTAAATCTGCATCATAGACTTAAAC----------------------------------------------------------------
SizeHit CountTotal NormV112
Male body
V043
Embryo
V051
Head
M022
Male body
.TTTG----------------------------GTGAAATCGGCATC............................................................................1811.000.000.000.001.00
50 chr3:2764838-2764856 - 9.92
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTTAAGCATTAATTATAA--------------------------------------------------------------------------------------------------------
SizeHit CountTotal NormV112
Male body
V043
Embryo
V051
Head
M022
Male body
None
45 chr2:30005794-30005800 - 4.96
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTAAAC--------------------------------------------------------------------------------------------------------------------
SizeHit CountTotal NormV112
Male body
V043
Embryo
V051
Head
M022
Male body
None None
17 chrXR_group6:8313642-8313647 + 4.13
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TCTATA---------------------------------------------------------------------------------------------------------------------
SizeHit CountTotal NormV112
Male body
V043
Embryo
V051
Head
M022
Male body
None None


droPer1 - 14 hits found

Lastz ID Coordinate Normalized Identity % Sequence RNAfold UNAfold
5 super_3:249021-249147 + 49.8
TTTATACATTTGTT---TATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCA----------------------------TGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTT-TAAATCTGTTCCCTAAAATATACTTTTTGAACG--------------AGAGAGTATATATGT------------ATGTATGCCGAGCAACTTCTAGTACCCCCTACTCAATATGTTTTTTTTTGGCTTAGTAAAATAATACATCTATATC
SizeHit CountTotal NormV111
Male body
V042
Embryo
V050
Head
V057
Head
M021
Embryo
...................AAAGATAxTTTTTGAACG--------------A......................................................................................................1812.000.000.000.000.002.00
.....................................................AGAGTATATATGT------------ATGTGAG.....................................................................2011.001.000.000.000.000.00
.....................................................................................................................ATTTTTTTTTGGCTGAGT...................1811.000.000.000.000.001.00
....................................G--------------AGAxCGTATATATGG------------ATGT........................................................................1911.001.000.000.000.000.00
.....................................................................................................................GTTTTATTTTGGCTTAATA..................1911.000.001.000.000.000.00
.....................................................................................................................GTTTTATTTTGGCTTATTA..................1911.000.001.000.000.000.00
178 super_1760:3536-3644 - 47.03
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTTCTTTTTAGTCAATTATTAGAATATTGAACTTTAATTAATATTGATAAAATTTAAAAGTTATTTGAATATAAATGCAGAGTAGTATATTTTTATGGTTTATATTTA--------------
SizeHit CountTotal NormV111
Male body
V042
Embryo
V050
Head
V057
Head
M021
Embryo
............................................................................TGCAGAGTAGTATATTTTTATGGTT......................2530.330.330.000.000.000.00
.........................................................................AAATGCAGAGTAGTATATTTTTATGGT.......................2730.330.000.000.330.000.00
..........................................TATTGATAAAATTTAAAAGTT............................................................2140.250.250.000.000.000.00
86 super_6:5386396-5386506 - 43.68
TTTATACAT-----------TTGTTTATA--ATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTAAACTCCTTAAATCTCTCTGTCTTTCCAGTT---TTTATAGAT--------------CTGACTTTGTAAGTATTTCCCTTTCCGGAAG---AGATAGCCCTTCTTTGATTGCACAACGGAAGTTATAT-----
SizeHit CountTotal NormV111
Male body
V042
Embryo
V050
Head
V057
Head
M021
Embryo
......GTCCTTAAATCTCGCTGT................................................................................................................1815.000.000.000.000.005.00
115 super_45:118937-119044 - 42.17
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
CTTTTAAAGCTATTTGGAAAGTTGTGACGTACTAAAAGTAATT--------------AAATGATAGAATTT-AAACCAAATAATATAATTCTGTTTTGTTTTAGACTTCTTGTCAGTTTCGTT
SizeHit CountTotal NormV111
Male body
V042
Embryo
V050
Head
V057
Head
M021
Embryo
13 super_6:5527137-5527245 + 39.28
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATG---CATGGTAAGGCTTTATTTTGT-TTTGCAATCAAAGACATCTT----------TCTT
ATTTTACTCCCATTTACAT-------------------TCAGTTTTTATAACATTTTAATGAGCCTCGTTTTACGATCATCTCTGG---------CGTGTGTGCTGGTATTTATAAACATTTTGATATGCAACTGTT
SizeHit CountTotal NormV111
Male body
V042
Embryo
V050
Head
V057
Head
M021
Embryo
......................................................................................................TCTGGTATTTxTAAACATTTT..............2011.000.000.000.000.001.00
100 super_14:207315-207413 - 38.27
TTTATACATTTGTTTATAATGC----ACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAG------ACATCTTT---------------CTT
TATATATACATATATATAGTGGCACCAAACAACAAATA-----------------------------------------------TATAAGCATCTATATTGTCTTATTGTACGAGTAGCAAACAG--TTATTGATATTTACACATCA
SizeHit CountTotal NormV111
Male body
V042
Embryo
V050
Head
V057
Head
M021
Embryo
112 super_38:54625-54678 - 27.27
TTTATACATTTGTTTATAATGCACATAATAAATGCC-AACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
CATATATATATATATAGAATCCAAATCATAATCGTGTATCCAACCCACAAGAAA----------------------------------------------------------------------
SizeHit CountTotal NormV111
Male body
V042
Embryo
V050
Head
V057
Head
M021
Embryo
....TATGTATATATAGAACCC......................................................................................................1820.500.000.000.000.000.50
...ATATGTATATATAGAACCC......................................................................................................1920.500.000.000.000.000.50
17 super_6:5527656-5527689 + 19.83
TTTATACATTTGT-TTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTTCAAATTTGATATACACTGAAGATAATCAAT------------------------------------------------------------------------------------------
SizeHit CountTotal NormV111
Male body
V042
Embryo
V050
Head
V057
Head
M021
Embryo
81 super_3:5244702-5244736 - 18.18
TTTATACATTTGTTTATAATGCACA--TAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTAGAAAATGATTCACGCTCCAAAGCTAATAAAT------------------------------------------------------------------------------------------
SizeHit CountTotal NormV111
Male body
V042
Embryo
V050
Head
V057
Head
M021
Embryo
7 super_3:6521229-6521259 + 13.8
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTT-------TGGTTATA-TCTGCATCATAGACTTAAAC------------------------------------------------------------------------------------
SizeHit CountTotal NormV111
Male body
V042
Embryo
V050
Head
V057
Head
M021
Embryo
107 super_27:123405-123439 - 13.74
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TGTA--C---TTTCTATAATATGGGTGGTTTATTCCGGCC-----------------------------------------------------------------------------------
SizeHit CountTotal NormV111
Male body
V042
Embryo
V050
Head
V057
Head
M021
Embryo
34 super_45:118669-118696 + 13.22
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
AGTTAACGAAGGATTTTAATATACATAA-----------------------------------------------------------------------------------------------
SizeHit CountTotal NormV111
Male body
V042
Embryo
V050
Head
V057
Head
M021
Embryo
.......GAAGGAATTTTATATACATAA-----------------------------------------------------------------------------------------------2111.000.001.000.000.000.00
27 super_27:123313-123331 + 9.09
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
ATTGAAAAGTCGTTTGAAA--------------------------------------------------------------------------------------------------------
SizeHit CountTotal NormV111
Male body
V042
Embryo
V050
Head
V057
Head
M021
Embryo
None
93 super_11:962700-962712 - 6.61
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
GTTGGAGCTTTGT--------------------------------------------------------------------------------------------------------------
SizeHit CountTotal NormV111
Male body
V042
Embryo
V050
Head
V057
Head
M021
Embryo
None None


droWil1 - 280 hits found

Lastz ID Coordinate Normalized Identity % Sequence RNAfold UNAfold
2812 scaffold_180708:152570-152690 - 57.25
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCAT-CATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATT--TTGTTTTGC---AATCAAAGACATCTTTCTT
TTTATATATATATATATGATGTAGATAT---ATATTT----TTTATATTTAAATTTTTTTAAAGTGATTTTTGTCAA-GGCTAGAAAAGCTTTATTTTTTGTTTTGTTTTAGTTTATGCGATATTTCTT
SizeHit CountTotal NormV117
Male body
V118
Embryo
V119
Head
M020
Head
..................ATGTAGAGAT---AxATTT----TTT.....................................................................................1834.000.003.001.000.00
..................ATGTCGATAT---AxATTT----TTT.....................................................................................1818.000.007.001.000.00
.........................................TTTATATGTAAATTTTTGTA....................................................................2032.000.001.670.000.33
..........................................TTATATGTAAATTTTTGTA....................................................................1940.750.000.750.000.00
...........................................TATATGTAAATTTTTGTA....................................................................1860.330.000.330.000.00
............................................................AAAGTGATTTTTGTAAA-C..................................................1811.000.001.000.000.00
......................AGTTAT---TTATTT----TTTATAT.................................................................................1920.500.000.500.000.00
.............................................................................................ATTTTTTGTTTTGCTTTATT................2011.000.001.000.000.00
.............................................................................................ATTTTCTATTTTGTTTTAG.................1911.000.001.000.000.00
..........................................................................................ATTCTTTTTTGTTTTGTT.....................18140.070.000.070.000.00
...ATATATATAGAGATGATGTA..........................................................................................................2030.330.330.000.000.00
..............................................................................................TTTTTTGTTTTGATTTGGT................1930.330.000.330.000.00
.............................................................................................TTTTTTTGTTTTGTTTTGG.................19190.050.000.050.000.00
..........................................................................................ATTATTTTTTGTTTTGTGT....................1940.250.000.250.000.00
......TATATATATTCGATGTAGA........................................................................................................1920.500.000.000.000.50
...............................................................................................TTTTTGTATTGTTTTATT................1870.140.000.140.000.00
.............................................................................................TTTTTTTGTTTTGTTTTTGTT...............21260.040.000.040.000.00
..........................................................................................TTTAGTTTTGGTTTTGTTT....................1950.200.000.200.000.00
..........................................................................................TTTATATTTTGTTTTGTT.....................18220.050.000.050.000.00
..........................................TTATATGTAAATTTTTGT.....................................................................1850.200.000.200.000.00
4122 scaffold_181145:1685121-1685241 - 52.8
TTTATACATTTGTTTATA----------------ATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTT----ATTTTGTTTTGCAATCAAAGACATCTTTCTT
TGTAGTTATTTATTTGTTTTTCTTAAATACTATGTTGTATATTTTTAATTTTAATTTTTTTTT----------------------TTTTTTTTTTTTAATAAAATGTTTTCTCTTTTTTTTTGTAATCAAAAAAAATTTTTTT
SizeHit CountTotal NormV117
Male body
V118
Embryo
V119
Head
M020
Head
......................................................TTTTTTTTT----------------------TTTTTTTTTTTT..............................................21320.630.000.470.060.09
.......................................................TTTTTTTT----------------------TTTTTTTTTTTT..............................................20440.160.000.140.000.02
......................................................TTTTTTTTT----------------------TTTTTTTTTTT...............................................20440.160.000.140.000.02
.....................................................ATTTTTTTTT----------------------TTTTTTTTTTTT..............................................22440.110.000.110.000.00
....................................................ATTTTTTTTTT----------------------TTTTTTTTTTT...............................................22440.110.000.110.000.00
........................................................TTTTTTT----------------------TTTTTTTTTTTT..............................................19640.060.000.000.060.00
.............................................TAATGCTAATTTTTTTTT----------------------TTTTTTT...................................................2513.000.003.000.000.00
.......................................TATTTTTAATTTTAGGTT......................................................................................1831.000.000.670.330.00
..............TGTTTTTCTTAAATACTATGTTGTA........................................................................................................2513.000.003.000.000.00
......................................................TTTTTTTTT----------------------TTTTTTTTTTTTG.............................................22510.040.000.020.020.00
........................................ATTTTTAATTTTAAATATTT...................................................................................2040.500.000.500.000.00
..................................................................................................ATAAATTGTTTGCTCTTTT..........................1911.000.001.000.000.00
........................................................................................................TTTTCTCTCTTTTTTTTTGTA..................2130.330.000.330.000.00
...................................................TAATTTTTTTTG----------------------TTGTTTTTTTTT..............................................2420.500.000.500.000.00
............................................................TTG----------------------TTGTTTTTTTTTAATA..........................................1950.200.000.200.000.00
......................................................TGTGTTTTT----------------------TTTTTTTTTTTTAAT...........................................2450.200.000.200.000.00
...................................................TAATGTTTTTTT----------------------TTTTTTTTTTTTT.............................................2580.130.000.130.000.00
....................................................AATTGTGTTTT----------------------TTTTTTTTTTTT..............................................2360.170.000.170.000.00
.....................................................ATTTTTTTTT----------------------TTTTTTTTT.................................................191320.010.000.010.000.00
.................................................TATAATTGTTTTTT----------------------TTTT......................................................18430.020.000.020.000.00
..................................................TTAATTTTTTTTT----------------------TTTTTTGTTTTT..............................................2540.250.000.250.000.00
............................................................................................................................AAGCAAAAGAAATTTTTT.1850.200.000.200.000.00
...................................................TAATTTTTTTTT----------------------TTGTGTTTTT................................................22100.100.000.100.000.00
..........................................................TTTGT----------------------TGTTTTTTTTTTAATA..........................................2130.330.000.330.000.00
....................................................ACTTTTTGTTT----------------------TTTTTTTTTTTT..............................................23180.060.000.060.000.00
...............................................................................................TTAATAAATTGTTTGCTCT.............................1911.000.001.000.000.00
...................................................................................................TAAAATGTTTCCTCTTTATT........................2011.001.000.000.000.00
...............................................................................................................................CGAAAAAAGTTTTTTT1830.330.000.330.000.00
..............................................AATTGGAATTTTTTTTT----------------------T.........................................................1860.170.000.170.000.00
..............................................AATGCTAATTTTTTTTT----------------------TTTTTTT...................................................2411.000.001.000.000.00
........................................ATTTTTAATTTGAATTTTG....................................................................................1911.000.001.000.000.00
.........TTATTTGTTTTTCTTAAATACTATGT............................................................................................................2611.000.001.000.000.00
.............................................TAATGCTAATTTTTTTTT----------------------TTTTTTTTTTT...............................................2911.000.001.000.000.00
.................................................TATAATTTTTTTTT----------------------TTTTTGTTT.................................................23100.100.000.100.000.00
..........................................................TTTTT----------------------TGTTTGTTTTTTAATA..........................................2130.330.000.000.330.00
......................................................TTTTTTTTT----------------------TTTTTTTTTTTAA.............................................22280.040.000.040.000.00
..............................................TATTTAAATTTTTTTTT----------------------TTTTTTTT..................................................2511.000.001.000.000.00
.............................................TAATGCTAATTTTTTTTT----------------------TTTTT.....................................................2311.000.001.000.000.00
..............TGTTTTTCTTAAATACTATGTTGT.........................................................................................................2411.000.001.000.000.00
......................................................................................TTTTTGTTTTTAGTAAAATGT....................................2111.001.000.000.000.00
...................................................TAATGGTTTTTT----------------------TTTTTTTTTTTT..............................................2450.200.000.200.000.00
...........................................................TTGT----------------------TGTTTTTTTTTTAATAA.........................................2111.000.001.000.000.00
.....................................................ATTTTTTTTG----------------------TTTGTTTTTTTT..............................................22200.050.000.050.000.00
.......................................................TTTTTTTT----------------------TTTTTTTTTTTTAA............................................22280.040.000.040.000.00
......................................................TTTTTTTCT----------------------TTTTTTTTTTTT..............................................21460.020.000.020.000.00
.................................................TATAGTTTTTTTTT----------------------TTTTTTTTTT................................................24170.060.000.060.000.00
............................................................................................................................AATCAAAAGTAATTTTTT.1860.170.000.170.000.00
............................................................................................................TTGTCTTTTTCTTTGTAATC...............2011.000.000.000.001.00
.....................................................ATTTTTTTTT----------------------TTTTTTTTTTTTT.............................................23320.030.000.030.000.00
....................................................ATTTTTTTTTT----------------------TTTTTTTTTTTT..............................................23320.030.000.030.000.00
.............................................TAATGCTAATTTTTTTTT----------------------TTTTTT....................................................2411.000.001.000.000.00
833 scaffold_180916:1274941-1275054 + 52.34
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCA-------TGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGAC---ATCTTTCTT-
AAAATAAAA-----------------ATTGGATGCCAACCAAAAGTGAACAGAATAGAAATTAGAAGGAGGATAATATCATGATTCATTATTTGTATTTGC---TTTTTGCAATAGTATGCCAAATGTTGCTGC
SizeHit CountTotal NormV117
Male body
V118
Embryo
V119
Head
M020
Head
........A-----------------ATTGAAGGCCAACCAAA...........................................................................................1811.000.001.000.000.00
..................................................................................CTTCxTTATTTGTATTTGC---..............................1811.000.001.000.000.00
..........................................................................................................TTTGCAACAGAATGCCAAA.........1911.000.001.000.000.00
2969 scaffold_180770:15914-16029 - 52.0
TTTATACAT-------TTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTA-AGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
GAACAAAAGAAATTAATGATTCATAATAAACTTAATATTTA---TTCAAACATTTCAAA---ATAATTAGCATCAT--C-------ATGATATAGGTTCGATCAAGTTGATCTACAAAAATTCTTCATCTT
SizeHit CountTotal NormV117
Male body
V118
Embryo
V119
Head
M020
Head
.............................................TCAAACAATTCAAA---ATACTTAGCATC.........................................................2612.000.002.000.000.00
.....................................................TTCAAA---ATAATTAGCATCAT--C-------GTGC.........................................2512.000.001.000.001.00
...CTAGAGAAATTAATGATT..............................................................................................................1811.000.000.001.000.00
......................................TTA---TTCAAACATTTCAAA---ATATTTAGCA...........................................................2811.000.001.000.000.00
.......................................................................................TGCTATAGGTTCGATCAATT........................2011.000.001.000.000.00
.............................................TCAAACAATTCAAA---ATAATTAGCATCAT--C-------C............................................3011.001.000.000.000.00
..........................................................................................TATAGGTTCGATCAATTTGAT....................2111.000.001.000.000.00
.......................................................................................TGCTATAGGTTCGATCAATTTGAT....................2411.001.000.000.000.00
..........................................................................................TATAGGTTCGATCAATTTGATCTAC................2511.000.001.000.000.00
2802 scaffold_180703:1827448-1827558 - 51.65
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACC--ATTCATCATGAAATTATA----AATAGTATCATTTCAAGATGCAT------GGTAAGG-CTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
ATTATACTTGAGT------GGTAGATAGT--ATGACAACCTGGCTGATAATTATATTATATGATAATGATATGATTTAGAGAAGCAATCAGTTAATAGAAATTTCAATTTATTTCTCAA-----------------
SizeHit CountTotal NormV117
Male body
V118
Embryo
V119
Head
M020
Head
..........................................................TATGAGAATGAGATGATT............................................................1812.000.002.000.000.00
.............................................................GTTAATGATATAATTTAG.........................................................1812.001.001.000.000.00
.........................................................ATATGAGAATGAGATGATT............................................................1911.000.001.000.000.00
....................................................................ATGTGxTTTAGAGAAGCAA.................................................1811.000.001.000.000.00
............................................................TGTTAATGATATAATTTAG.........................................................1911.000.001.000.000.00
.ATATACTTGAGT------GGTGGA...............................................................................................................1811.000.001.000.000.00
1858 scaffold_181144:207971-208081 + 51.24
TTTATACATTTGTTTATAATGCACATAATAAATGCC-----AACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
ATAAGT---------------ACCATAATTACTGATAGCAGAAACGTTAATTTTGATATTATAATTAATTTCATTTCTAATAATATCTTAAGTTTTTTATTCCAGAAGCAGTTTAAAGCACTTC--CC
SizeHit CountTotal NormV117
Male body
V118
Embryo
V119
Head
M020
Head
...............................................................................................................................T27200.050.000.050.000.00
................................................AATTTTGGGATTATAATT..............................................................1811.001.000.000.000.00
.................................................................................................TATTCCAGAAGCAGCTTAAAACACTT.....2611.000.001.000.000.00
...............................................................................................................................T28200.050.000.050.000.00
....................................AGCAGAAACGGTAATGTT..........................................................................1811.000.001.000.000.00
...............................................................................................................................T21220.050.000.050.000.00
................................................................................................TTATTCCAGAAGCAGCTTAAAACACTT.....2711.000.001.000.000.00
........................................................................................TAAATTTTTTATTCCAGAAGCAGTT...............2511.000.001.000.000.00
..............................................................................................TTTTATTCCAGAGGCAGTTCAAA...........2311.000.001.000.000.00
4561 scaffold_189283:47-168 - 50.78
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCAT--------GAAATTATAAATAGTATCAT-------------------TTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTA-----------------------ATATATTAAAACCATTGTTAATTTTTACTTTAAGTGAAGAATAATATTATGACACAATTATTTTTTCATTTCAT-ATCATTAATAAGAGGCAATTCTAGATTAAAATTT----AATATTTTTT
SizeHit CountTotal NormV117
Male body
V118
Embryo
V119
Head
M020
Head
..........................................................AAGTGAAGAAxAATATTTT.........................................................................1830.330.000.330.000.00
...............................................................................CACAATTATTTTTTTAATT....................................................1920.500.000.500.000.00
..............................................................................................ATTTCAT-ATCATTAATAAGAGG.................................2220.500.000.500.000.00
.................................................................................CAATTATTTTTGCGTTTCAT-................................................2020.500.500.000.000.00
......................................................................................................ATCATTAATAAGAGGCxATTCTAGA.......................2420.500.000.500.000.00
..........................................................................................................................CTAGATTAAAATTT----AATATTT...2120.500.000.500.000.00
......................................................................................................ATGATTAATAAGGGGCAA..............................1820.500.500.000.000.00
1674 scaffold_181136:1240965-1241086 + 50.71
TTTATACATTTGTTTATA-ATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTT------TATTTTGTTTTGCAAT---CAAAGACATCTTTCTT
TTTATACATATACTGTTACATAGACATA-TACATACAAA--------TACGTGTACATGAATATTATCAT--CAATGAACTAAGTAAGTCTACTAGCCGACTTTGGTATACCATACACCAGTAAAGCGAATAT
SizeHit CountTotal NormV117
Male body
V118
Embryo
V119
Head
M020
Head
.................................................................................................CGACTTAGGTATACCATACACCAGT...........2581.130.001.130.000.00
.....................................................................T--GAATGAACTAAGAAAGT............................................1815.000.004.000.001.00
......................................................................................................TAGGTATACCATACACCAGTGAAGC......2580.630.000.630.000.00
......................................................................................................TAGGTATACCATACACCAGTAGAGC......2580.500.000.500.000.00
.................................................................................................CGACTTAGGAATACCATACACCAGT...........2580.380.000.380.000.00
............................................................................................................TACCATACACCAGTAAAGCAAATAT2590.220.000.220.000.00
...............................................................................................................CATACACCAGTAAAGCAAATAT2290.220.000.220.000.00
...................ATACACATA-TACATACATA--------T.....................................................................................20480.020.000.020.000.00
....................................................................................................CTTAGGTATACCATACACCAGTAGAGC......2780.130.000.130.000.00
.....................................................................................................TTAGGTATACCATACACCAGTAGAGC......2680.130.000.130.000.00
.................................................................................................CGAGTTAGGTATACCATACACCAGTAA.........2780.130.000.130.000.00
....................................................................................................................ACCAGTAAAGCAAATAT1890.110.000.000.110.00
...........................................................................................................CTACCATACACCAGTAAAGCAAATA.2590.110.000.110.000.00
....................................................................................................................ACCAGTGAAGCAAATAT1990.110.000.110.000.00
.................................................................................................CGACTTAGGTATACCATACACCAG............24120.080.000.080.000.00
...........................................................................................................GTACCATACACCAGTAAAGCAAATAT2690.110.000.110.000.00
.....................................................................................................TTAGGTATACCATACACCAGTAAAGC......2680.130.000.130.000.00
..........................................................................................................TATACCATACACCAGTAAAGCAAATAT2780.130.000.130.000.00
...........................................................................................................ATACCATACACCAGTAGAGCA.....2180.130.000.130.000.00
............................................................................................................TACCATACACCAGTGAAGCAAATAT2690.110.000.110.000.00
..............................................................................................................CCATACACCAGTAAAGCAAATA.2290.110.000.110.000.00
................................................................................................CCGACTTAGGTATACCATACACCAGT...........2670.140.000.140.000.00
...........................................................................................................ATACCATACACCAGTAAAGCAAAT..2480.130.000.130.000.00
.........................................................................................................GTATACCATACACCAGTAAAGCA.....2380.130.000.130.000.00
..........................................................................................................TATACCATACACCAGTGAAGCAAA...2480.130.000.130.000.00
.................................................................................................CGACTTCGGTATACCATGCACCAG............24120.080.000.080.000.00
...............................................................................................GCCGACTTTGATATACCC....................1820.500.000.000.000.50
.................................................................................................................TACACCAGTAAAGCAAATAT2090.110.000.110.000.00
..............................................................................................................CCATACACCAGTGAAGCAAATAT2590.110.000.110.000.00
..........................................................................................................TATACCATACACCAGTGAAGC......2180.130.000.000.130.00
............................................................................................................TACCATACACCAGTGAAGCAAATAT2590.110.000.110.000.00
............................................................................................................TACCATACACCAGTAAAGCAAATAT2690.110.000.110.000.00
.................................................................................................CGACTTTGGTATACCATACACCAGT...........2570.140.000.140.000.00
.....................................................................................................TAAGGTATACCATACACCAGT...........2180.130.000.000.130.00
................................................................................................CCGACTTAGGTATACCATACATCAGT...........2670.140.000.140.000.00
...........................................................................................................ATACCATACACCAGTAAAGCA.....2180.130.130.000.000.00
...........................................................................................................ATACCATACATCAGTAAAGCAAATA.2580.130.000.130.000.00
..........................................................................................................TATACCATACACCAGTAAAGCAA....2380.130.000.130.000.00
..............................................................................................................CCATACACCAGTGAAGCAAATAT2490.110.000.110.000.00
3758 scaffold_181130:4827266-4827391 - 50.3
TTTATACAT--TTGT----------TTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
ATAACACTAATTTGTGTTTAATTTAATTTAATTTAAATAATAATAAAAAACAATTCCTAGGCAAAATCTAATTTGTTTATTTTTTAAATTTATAAATAAAGCAAATTATATTTTACAACAGACGAC---------
SizeHit CountTotal NormV117
Male body
V118
Embryo
V119
Head
M020
Head
.................................TAAGTAATAATAAAAAAAAA..................................................................................2070.140.000.140.000.00
........AATTGGTGTGTAATTTAA.............................................................................................................1811.000.000.001.000.00
...................................................................................TTAAGTTTACAAATAAAGCAA...............................2111.000.000.001.000.00
...................................AATAAAAATGAAAAACAA..................................................................................18240.040.000.040.000.00
AAAATACTAATTTGTGTT.....................................................................................................................1811.000.001.000.000.00
....CxTTAGTTTGTGTTTAATTTAA.............................................................................................................2111.000.001.000.000.00
..AATACTAATTTGTGTTAAA..................................................................................................................1911.000.001.000.000.00
.......................................................................................................AATTATATTTTAAAAAAG..............1830.330.000.330.000.00
2790 scaffold_180703:768451-768581 - 49.84
TTTATACAT---TT---------GTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATC---AAAGACAT--CTTTCTT
TTTAATCAACGTTTATTACCAAATTTTATCAAACAAAATAAAAAAGCCATGTACTGATA---------AAAGTAAAAACAATTTAACAAATAAATTATAAATTCCATTGGTTTTGAAATATTTTAATACATTAATTTAAT
SizeHit CountTotal NormV117
Male body
V118
Embryo
V119
Head
M020
Head
..................................AAAATAAAAGAGCCATGTC.......................................................................................1911.000.001.000.000.00
..........................TACCAAACAAAAAAAAAA................................................................................................18300.030.000.030.000.00
..............GTTAGCAAATTTTATCAAA...........................................................................................................1911.000.001.000.000.00
..............................AAACAAAATAAAAGAGCCATGTCC......................................................................................2411.001.000.000.000.00
...................................................................................................................AAATATTTTCATACAATA.......1830.330.000.330.000.00
3901 scaffold_181136:805561-805688 - 49.65
TTTATACATTT-----GTTTATAATGCACATAATAAA------TGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTG------TTTTGCA--------ATCAAAGACATCTTTCTT
TCTTTACATTAAAAGTATTTATT--CCA----TTGAATGCAAAAACGTACTATTT-CCATGAATGTA----------GATTTTAAAATGT-TAGTG-TGCTTTTTTTTTTGACCATTTTACTATAATTGTGTCAAGTGC-CAATTCTT
SizeHit CountTotal NormV117
Male body
V118
Embryo
V119
Head
M020
Head
...........................................................................................................................TAATAGTGTCAAGTGC-CAATTCTA2412.000.002.000.000.00
.......................................................................................TGT-TAGTG-TGCTTTTGTA.........................................1812.000.002.000.000.00
.....................................................TT-CCATGAATGTA----------GATTTTAAAATGT-.........................................................2612.000.002.000.000.00
............................................................GAATGTA----------GATTTTAAAATGT-TAGTG-...................................................2511.001.000.000.000.00
...........................................................................................................................TAATAGTGTCAAGTGC-CA......1811.000.001.000.000.00
...............................................TACTATTT-CCATTAATGTT----------GATTT..................................................................2411.000.001.000.000.00
...............................................................TGTA----------GATTTTAAAATGT-TAGTG-TGCTT..............................................2711.000.001.000.000.00
............................................ACGTACTATTT-CCATGAATGT..................................................................................2111.000.001.000.000.00
............................................................................................................................AATAGTGTCAAGTGC-CAATTCTA2311.000.001.000.000.00
..........................................AAACGTACTATTT-CCATGAAT....................................................................................2111.000.001.000.000.00
986 scaffold_181024:1080746-1080867 + 49.61
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCAT---------------------TCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
C------TTTTTTTTATTGTGCAATTATTATAGTCTAAACTTTATTGTTTGTTTTTGTTTGATTTCTCAAAAACTATTAAAGACTTTGATTTTAAAATCATCCAGTAAATTTTATTTTATTTTGCAA-----------------
SizeHit CountTotal NormV117
Male body
V118
Embryo
V119
Head
M020
Head
.......................................CTTTATTGTTTxTTTTCGTTTG...................................................................................211121.00114.000.000.007.00
......................................ACTTTATTGTTTxTTTTCGTTT....................................................................................2111.001.000.000.000.00
........................................TGTAGTGTTTGTTTTTGTTT....................................................................................2030.330.000.330.000.00
...........................................ATGGTTTGTTTTTGTTTGC..................................................................................1911.000.001.000.000.00
........................................TTTATTGTTTGTTTTTGTTTG...................................................................................2111.000.001.000.000.00
..............................................GTTTTTTTTTGTTAGATT................................................................................1830.330.000.330.000.00
.......................................CTTTATTGTTTxTTTTCGTTT....................................................................................2011.001.000.000.000.00
2172 scaffold_181155:710035-710147 + 49.31
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTAT-TTTGTTTTGCAATCAAAGACATCTTTCTT
TA--AAAATTTATTAATGACAACGATAATTATTATAAA---T-TTTTTTTAAATCTTATAAATTATCAATTCAAGATTAAA--TTAGTT-TTATTTTTTCATAGCAGCGGTTG--AACTTCTAT
SizeHit CountTotal NormV117
Male body
V118
Embryo
V119
Head
M020
Head
..............................ATTATAAA---T-TTATTTTAAA.......................................................................1921.000.001.000.000.00
...........................................................................................................................T27200.050.000.050.000.00
...........................................................................................................................T28200.050.000.050.000.00
................................TATAAA---G-TTTTTGTAAAT......................................................................1820.500.000.500.000.00
...............................TTTTAAA---T-TTCTTTTAAA.......................................................................1870.140.000.140.000.00
....................................................................................TACTT-GTATTTTTTCATA.....................1811.000.001.000.000.00
...........................................................................................................................T21220.050.000.050.000.00
1201 scaffold_181096:905577-905680 + 48.78
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAA---ATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTT--GTTTTGCAATCAA-AGACATCTTTCTT
A------------------TAAAAATAGAATATGTCAACCCTTTTTCATATAACTACAATGGAAAAGATTGGTTTAAAAT-------AAAGTTTCAGTGGTTTTTCTCCAAACAATAGTCATTTGTTAT
SizeHit CountTotal NormV117
Male body
V118
Embryo
V119
Head
M020
Head
..............................................................................................................................TTG2140.500.000.000.000.50
..............................................TATAxAACGACAATGGAAA................................................................1812.000.001.001.000.00
...............................................ATAxAACGACAATGGAAAA...............................................................1811.000.000.000.001.00
..........................................................................................................TACAAACAATAGTAATTTGT...2011.000.001.000.000.00
................................................................................................................................G1920.500.000.000.000.50
..............................................TATAxAACGACAATGGAAAA...............................................................1911.000.000.000.001.00
.............................................................................................................................TTTG2130.330.000.330.000.00
..........................................................................................GTTTCAGTCGTTTTACTC.....................1811.000.000.000.001.00
1264 scaffold_181096:8430700-8430818 + 48.78
TTT-ATACATTTG-TTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TGTGGTACATTTGATTTGTGAGTTTAATATTGACTTTGAAGGGTTCATGCTAAATTTAGGCATTATTTACTTTTACTGTACGTCC----CCTTGAG-ATATTCG-ACAGGCAATATATATATGTG
SizeHit CountTotal NormV117
Male body
V118
Embryo
V119
Head
M020
Head
............GATTTGTAAGTTTAATTT...............................................................................................1812.000.002.000.000.00
........ATTAGATTTGTAAGTTTAA..................................................................................................1920.500.000.500.000.00
................................................................................................................ATATATATATGTG18260.040.000.040.000.00
4095 scaffold_181144:25220-25323 - 48.78
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAA---AGACATCTTTCTT
-----------------AAGACACAAAGTAAATTCTAACCGTTCTTCGAATG-AGAGAAATAAAACCA----GGGGCGTTGGGTAAGCCTTTCTACTGGCTTACACACACAACGGACAACTCCGCC
SizeHit CountTotal NormV117
Male body
V118
Embryo
V119
Head
M020
Head
...................................................G-AGAGAATAAAAACCA----GGGGC.................................................2112.000.000.002.000.00
..............................................................................TTGAGTAAGCCTTTCTACTGG...........................2111.001.000.000.000.00
2895 scaffold_180727:246684-246803 - 48.76
TTTATACATTTGTTT-ATAATGCACATAATAAATGCCAACCATTCATCA---------------TGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTAGAAATTTGCTTTGCAACTCAGTTATCCATTTTTATCTTTTCGAAGCTATTTCTCTGCACACATATATATGACTAGAATTATATGAATTTATCTTTTTTGTTTTTGTTTTTTTTTTC-------------------
SizeHit CountTotal NormV117
Male body
V118
Embryo
V119
Head
M020
Head
.......................................................................ATGACTxGAATTACATGAA.................................................1812.000.000.000.002.00
.....................................................................................................TGTTTTTGTTTTTTTTTTT-------------------21320.060.000.060.000.00
......................................................................................TGACTTCATCTTTTTTGTT..................................1911.000.001.000.000.00
..................................................................................................CTTTGTTTTGGTTTTTTT.......................18140.070.000.070.000.00
....................................................................................................TTGTTGTTGTTTTTTTTTTT-------------------21310.030.000.030.000.00
..................................................................................................TTTTGTTTGTGTTTTGTT.......................18180.060.000.060.000.00
............................................................................................................GTTTTTTTTTTC-------------------21240.040.040.000.000.00
.............................................................................................TTGTTTTTTGTTTTTGTTTT..........................20400.030.000.030.000.00
...................................................................................................TTTGTTTTTGTTTTTTGTTTT-------------------21220.050.000.050.000.00
................................................................................................TTGTTTGTTGTTGTTTTTTT.......................20130.080.000.000.080.00
..........................................................................ACTAAAATTATxTGAATTT..............................................1811.000.000.000.001.00
.................................................................................................TTTTCGTTTTTGTTTTTTTTT.....................21180.060.060.000.000.00
............................................................TACACATATAAATGACTA.............................................................1830.330.000.000.000.33
...................................................................................................TTTGTTTATGTTTCTTTTT.....................1960.170.000.170.000.00
...................................................................................................GTTGTTTTTGTTTTGTTT......................18370.030.000.030.000.00
................................................................................................GTTTTTGTTTTTGTTTTTTTGT.....................2250.200.200.000.000.00
................................................................................................TTTTTTGTTTTTCTTTTCTTT......................21130.080.000.000.080.00
......................................................................................................TTTTTTGTTTTTCTTTTC-------------------21130.080.000.000.080.00
1798 scaffold_181141:2342463-2342579 + 48.74
TTTATACATTTGTTTATAATGCACATAATAA-ATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTATATGGTCGGAGATGCTTCCTTCTATGCTTTGC---ACACTTCTGACCAAAATTAATATACCCTTTTTGCAA-GGGTATAAAAAAGGTCAATCTTGTTG---ACGTTAACACAAATTTCCT
SizeHit CountTotal NormV117
Male body
V118
Embryo
V119
Head
M020
Head
..TATATGGTTGGAGATGCTTCCTTC..................................................................................................24740.010.000.000.010.00
...................................................................TTTTGCAA-GGGTATAAAAATGTT.................................23290.030.000.030.000.00
..........................TATGCTTTGG---ACACTTCTGACCA........................................................................23910.010.000.010.000.00
.....................................................................CTGTAA-GGGTATAAAAAAG...................................19160.060.000.060.000.00
...........................ATGCTTTGC---ACACTTCTGACCT........................................................................22900.010.000.000.000.01
1303 scaffold_181108:4315817-4315932 + 48.71
TTTATACATTTGTTTA-TAATGCACATAATAAATGCCAA-CCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
CAATTAGATTTATGTTGTTGTTCAATAAAAAAATATAAAACGATTTATGTGATA-------ATCAAATCATAGAAAAATTGTCAATTAGATTTCCATTGGGTTT--AGTTAATGCTATTTACTTT
SizeHit CountTotal NormV117
Male body
V118
Embryo
V119
Head
M020
Head
.AATTTGATTTATTTTGTT..........................................................................................................1850.200.000.200.000.00
..ATTTGATTTATTTTGTTG.........................................................................................................1820.500.000.500.000.00
..................................................................AACAGAGAAAAATTGTCA.........................................1811.000.001.000.000.00
.........................................................................AAAAAATGTCAATTAGGTT.................................1911.000.001.000.000.00
.............GTTGTTGTTAAAAAAAAAAA............................................................................................2011.000.001.000.000.00
2691 scaffold_180698:4307803-4307921 - 48.45
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCT--TTATTTTGTTTTG----------CAATCAAAGACATCTTTCTT
TGGTGAAAGTTATG-AT-------------ATTACAAACCATACAGTGCGA--GTGTAAAGTCTTTCAATTAAAAAGTTATATAGAAACTTATTATTTTAGGTATTATTTCATGTATTTCAAACATACTATCCTT
SizeHit CountTotal NormV117
Male body
V118
Embryo
V119
Head
M020
Head
....................................................................ATTxGAAAGTTATATAGAAA...............................................1913.000.003.000.000.00
....................................AACCATACAGTGCGA--GTGTAAAGTCT.......................................................................2611.000.001.000.000.00
......................................................................................AATTTATTATTTTATGTA...............................1820.500.000.500.000.00
....CAAAGTTACG-AT-------------ATTACAAA.................................................................................................2011.001.000.000.000.00
688 scaffold_180772:3110602-3110722 + 48.41
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAG-----GCTTTATTTTGTTTTGCAATCAAAGACA----TCTTTCTT
A-------CTTAGGTATACCATACACCAGTAATGCAAATATTTCAACTTTA----TTAAAAAAATGCATTTTCACATGCTTCTTACAAGCATATCTTAGTATCTCGCTCACTCAATCATACGATTTGATTGC
SizeHit CountTotal NormV117
Male body
V118
Embryo
V119
Head
M020
Head
...........................................................................................TATCTTAGTATCTCGCTCACTCAATCA..............2761.330.001.330.000.00
...................................................................................................................................A19100.600.100.500.000.00
...........................................................................................TATCTTAGTATCTCGCTCACT....................21100.500.000.300.100.10
..........TAGGTATACCATACACCAGTGAAGC.................................................................................................2580.630.000.630.000.00
..........TAGGTATACCATACACCAGTAGAGC.................................................................................................2580.500.000.500.000.00
................................................................................................TAGTATCTCGCTCACTCAATCATA............2450.600.000.600.000.00
...................................................................................................TATCTCGCTCACTCAATCATACGAG........2540.750.000.500.250.00
...........................................................................................TAGCTTAGTATCTCGCTCACTCAACCA..............2750.600.000.600.000.00


droVir3 - 86 hits found

Lastz ID Coordinate Normalized Identity % Sequence RNAfold UNAfold
576 scaffold_135:841-956 - 54.43
TTTATACATTTGTTTATAATGCACATAATAAATGC------------------------CAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGAT--GCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TATATATATGTGAACATAACTTATATAATACATATGACATACTGCCAGACAAATAAACGTAACTATTTATGT----------------TTGAAATCAAGATCACCAAAATAAATGATGATTTTATTTTACAA-----------------
SizeHit CountTotal NormV116
Male body
V053
Unknown
V047
Embryo
M027
Male body
M028
Head
............................................................................................................ATATATGATGATTTTCTT.......................1820.500.000.000.500.000.00
........TGAGACCATAACTTAT.............................................................................................................................1620.500.000.500.000.000.00
683 scaffold_12728:547896-548020 - 54.03
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACC--ATTCATCATGAAATTATA-AATAGTATCATTT-CAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTATTTATTTATTAATGGTCGACAAAACGAGTGTCTTCCTCATTATTCAAAAGATTGTACAATAGAATTATATGCTAAAAGCCTAGTTAAAGGAT--ACAATTTTCTAAATAGCATCACCGACCGA
SizeHit CountTotal NormV116
Male body
V053
Unknown
V047
Embryo
M027
Male body
M028
Head
.............TAATGGTCGACAAAACGAGTGTCT..........................................................................................24354.0014.670.3332.336.670.00
.............TAATGGTCGACAAAACGAGAGTGT..........................................................................................24246.5030.000.0014.002.500.00
.............TAATGGTCGACAAAACGAGTGT............................................................................................22314.6710.330.001.332.670.33
.............TAATGGTCGACAAAACGAGTGTCTTC........................................................................................26310.6710.670.000.000.000.00
.............TAATGGTCGACAAAACGAGT..............................................................................................2039.679.000.000.000.670.00
.............TAATGGTCGACAAATCGAGTGTCT..........................................................................................2436.673.330.003.330.000.00
.............TAATGGTCGACAGAACGAGTGTCT..........................................................................................2436.330.000.006.330.000.00
.............TAATGGTCGACAAAACGAGTGTCTT.........................................................................................2533.670.000.003.670.000.00
.............TAATGGTCGACAAAGCGAGTATCT..........................................................................................2425.001.000.003.500.500.00
.............TAATGGTCGACAAAACGAGTGTC...........................................................................................2333.331.670.001.000.670.00
.............TAGTGGTCGACAAAACGAGTGTCT..........................................................................................2433.000.670.000.671.670.00
.............TAATGGTCGACAAAACGAGTGTCGG.........................................................................................2524.500.000.004.500.000.00
.............TAATGGTCGACAAAGCGAGTGTCT..........................................................................................2433.001.670.001.330.000.00
.............TAATGGTCGACAAAATGAGAGT............................................................................................2224.003.500.000.500.000.00
.............TAATGGTCGACAAAGCGGGTGTCTT.........................................................................................2523.500.000.001.002.500.00
.............TAATGGTCGACAAAACGAGAGTGTT.........................................................................................2523.500.000.003.500.000.00
.............TAATGGTCGACAAAACGAGTGTCGTC........................................................................................2632.330.000.002.330.000.00
.............TAATGGTCGACAAAACGAGTGCCT..........................................................................................2432.000.000.000.331.670.00
.............TAATGGTCGACAAAACGAGTGTCTCT........................................................................................2623.000.000.003.000.000.00
.............TAATGGTCGACAAAGCGGGTGTCT..........................................................................................2423.000.000.002.500.500.00
.............TAATGGTCGACAAAACGAGAGT............................................................................................2232.002.000.000.000.000.00
.............TAATGGTCGACAAATCGAGTGT............................................................................................2232.001.000.001.000.000.00
.............TAATGGTCGACAAAACGAG...............................................................................................1932.001.670.000.000.330.00
.............TAATGGTCGACAAATCGAGTGTC...........................................................................................2331.671.000.000.330.330.00
.....................................................................TATATGCTAAAAGCCTAGTTAAAGGA................................2615.003.000.002.000.000.00
.............TAGTGGTCGACAAAACGAGTGT............................................................................................2231.671.330.000.000.330.00
.............TAATGGTCGACAAAACGAGAGTCT..........................................................................................2431.671.670.000.000.000.00
............TTAATGGTCGACAAAACGAGT..............................................................................................2131.331.330.000.000.000.00
.............TAATGGTCGACAAAACGAGTGTCTCC........................................................................................2631.331.000.000.000.330.00
..............AATGGTCGACAAAACGAGTGT............................................................................................2131.331.000.330.000.000.00
............................................................................TAAAAGCCTAGTTAAAGAAT--ACAATTT......................2714.000.000.004.000.000.00
.............TAATGGTCGACAAAACGAGTGC............................................................................................2231.331.330.000.000.000.00
.............TAATGGTCGACAAAACGAGTG.............................................................................................2131.330.330.000.001.000.00
...............................................TCAAAAGATTGTACAATAGAATTATAT.....................................................2713.000.000.001.002.000.00
.............TAATGGTCGACAAAACGA................................................................................................1831.000.000.000.330.670.00
............................................................................TAAAAGCCTAGTTAAAGAAT--ACAATT.......................2613.002.000.001.000.000.00
.............TAATGGTCGACAAGACGAGTATCT..........................................................................................2421.500.000.000.001.500.00
............TTAATGGTCGACAAAACGAGTGTCT..........................................................................................2531.000.330.000.000.670.00
.............TAATGGTCGACAAAACGAGTATCT..........................................................................................2431.000.000.001.000.000.00
.............TAATGGTCGACAAAATGAGTGTCT..........................................................................................2431.000.330.000.330.330.00
.............TAATGGTCGACAAAACAAGTGT............................................................................................2231.000.330.000.670.000.00
.............TAGTGGTCGACAAAACGAGTGTC...........................................................................................2331.000.000.000.001.000.00
............................................................................TAAAAGCCTAGTTAAAGAAT--ACAA.........................2413.001.000.002.000.000.00
.............TAATGGTCGACAAAGCGAGTATCTTC........................................................................................2621.500.000.001.500.000.00
.............TAATGGTCGACAAAACGAGTGTCC..........................................................................................2431.000.330.000.000.670.00
............TTAATGGTCGACAAAACGAGTGT............................................................................................2331.000.330.000.330.330.00
496 scaffold_13052:817186-817309 + 52.95
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATT-ATAAATAGTATCATT----TCAAGATGCATGGTAAGGCTTT---ATTTTGTTTTGCAATCAAAGACATCTTTCTT
TATACACGTATATATATATTGAA-ACA----ATAATAATCACTAGTCTTTAAATTAATTGATATTATAATTTATTGCAGTTTGCTTGTTAGGATTTTTAAGCCCCGCTTCAC--TTTAGCAAGTTTTTTTT
SizeHit CountTotal NormV116
Male body
V053
Unknown
V047
Embryo
M027
Male body
M028
Head
...................................................................AATTTAATGTAGTTTGCTT.............................................1911.000.000.000.000.001.00
68 scaffold_12726:2199701-2199821 + 52.76
TTTATACATTTGTTTATAATGCACATAATAAATGCCAAC-------CATTCATCATGAAATTATAAATAGTATCATTTCAA--GATGCATGGTAAGGCTTTATT---TTGTTTTGCAATCAAAGACATCTTTCTT
TTTAA----TTG----CATCGGATACAATAAAATACAACCCGGCAGCATTCAAATTGGATTTATGGAAAGCAT---TTGAATTAAGGCAAACTTAGCCTAGATATTTAGGAATTGAGCTCAAAACCAAA---TCA
SizeHit CountTotal NormV116
Male body
V053
Unknown
V047
Embryo
M027
Male body
M028
Head
...................................................................AAGCAG---CTGAATTAAGGC...............................................1811.000.001.000.000.000.00
...................................................AAATTGGAATTATGGGAAG.................................................................1911.001.000.000.000.000.00
310 scaffold_12970:2660540-2660670 + 52.18
TTTATACATTTGTTTA-----TAATGCACATAATAAATGCCAACCATTCATCA-TGAAATTATAAATAGTATCATTTCAA--GATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTAAATCATTATTAATATTATTATTTTTATTATTATTGTGTTAAATTAGTCATTGTTATTATCATTAGTATTATTTTAATTGTTTCATTGATATAATTTTTTTAAATTGGTATTTAGATAATTATTTCAT
SizeHit CountTotal NormV116
Male body
V053
Unknown
V047
Embryo
M027
Male body
M028
Head
...............ATTTTATTATTTTTATAA..................................................................................................1870.290.000.000.000.290.00
..................TTATTATTTGTATTTTTATT.............................................................................................2030.330.000.000.330.000.00
............................................................................................................TGGGATGTAGATAATTAT.....1811.000.001.000.000.000.00
17 scaffold_7123:1032-1150 + 51.97
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
ATTGCGCAGTTGCATATAACT---TTGGTTTTTCTTAACCGATCTTTATGAAATTTTCTACAGTAT-ATCTTATTATACCAAAGAATATTTTGTATTCTGAAAAAATCAATTGCATTTAAATT
SizeHit CountTotal NormV116
Male body
V053
Unknown
V047
Embryo
M027
Male body
M028
Head
...................................TAACCGATCTTAAGGAAAT.....................................................................1990.110.000.000.000.110.00
................................................................................................TCTGAAAAAGTCAATTGCATT......2160.170.000.000.000.170.00
.................................TTTAACCGATCTTTATGAAAT.....................................................................21110.090.090.000.000.000.00
....................................AACCGATCTTTATGAAATATT..................................................................21110.090.090.000.000.000.00
................................................................................................TCTGxAAAAACCAATTGCATTTAAAT.2530.330.000.000.000.330.00
...............................................................................................TTCTGAAAAAATCAATTGCATTTAAAT.2740.250.000.000.000.250.00
........................................................................................................................TTT21110.090.090.000.000.000.00
..........................................................................................................................T1990.110.000.000.000.110.00
1036 scaffold_13045:665853-665980 - 51.96
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTA---------------------------AGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
CTTTGGTATTTCT----------------------TAACCGATCTTTATAAAATATTTTACAGTATATCTTATGGAACCATAGAATATTTCTGTATTCTGAAAAAATGAATTGTGCTTTAAATTGGTTGGCAATAAAAGTTGGGTTATTA
SizeHit CountTotal NormV116
Male body
V053
Unknown
V047
Embryo
M027
Male body
M028
Head
.........................................................................................................................ATTGGTTGGCAATAAAAGTTG........2140.500.500.000.000.000.00
......................................................................................................................TAAATTGGTTGGCAATAAAAGTTGG.......2540.250.000.000.250.000.00
..........................................................................................................................TTGGTTGGCAATAAAAGT..........1840.250.000.000.000.250.00
..........................................................................................................................TTGGTTGGCAATAAAAGTTG........2040.250.250.000.000.000.00
...........TT----------------------TAACCGATCTTTATGAAAT................................................................................................21110.090.090.000.000.000.00
................................................................................................................GTGGTTTAAATTGGTTGGCAT.................2120.500.500.000.000.000.00
.................................................................................................................TGGTTTAAATTGGTTGGCAATAAA.............2430.330.330.000.000.000.00
.....................................................................................................................TTAAATTGGTTGGCAATAAAAGTTG........2540.250.250.000.000.000.00
.........................................................................................................................ATTGGTTGGCAATAAAAGTTGGG......2340.250.000.000.000.000.25
................................................................................................................GTGGTTTAAATTGGTTGGCAATAAAA............2620.500.500.000.000.000.00
............................................................................................................AATTGTGGTTTAAATTGGTTG.....................2120.500.000.000.000.000.50
.................................................................................................................TGGTTTAAATTGGTTGGCAATAAAAG...........2630.330.330.000.000.000.00
.....................................................................................................................TTAAATTGGTTGGCAATAT..............1940.250.250.000.000.000.00
................................................................................................................................GGCAATACAACTTGGGTTATTA2230.330.000.000.330.000.00
................................................................................................................GTGACTTAAATTGGTTGGCAATAAAAGT..........2830.330.330.000.000.000.00
.............................................................................................................................GTTGGCAATAAAAGTTGGGTT....2140.250.000.000.000.000.25
......................................................................................................................TAAATTGGTTGGCAATAAAAG...........2140.250.250.000.000.000.00
....................................AACCGATCTTTATGAAATATT.............................................................................................21110.090.090.000.000.000.00
......................................................................................................................TAAATTGGTTGGCAATAAAAGTTG........2440.250.250.000.000.000.00
.....................................................................................................................ATAAATTGGTTGGCAATAAAAGTTG........2540.250.250.000.000.000.00
..............................................................................................................CTGTGGTTTAAATTGGTTGG....................2020.500.000.500.000.000.00
326 scaffold_13036:667473-667588 + 50.62
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGAC--ATCTTTCTT
TTAATATATATATATATA-TGTAACTA-------TCAATATATAATTACATATATATATATATATATATATATATATAAATATTATTATTTTATTTTGTT-TGTAATTATATATTGATAGTTACT
SizeHit CountTotal NormV116
Male body
V053
Unknown
V047
Embryo
M027
Male body
M028
Head
..................................................................................TTCTTATTTTATTTTGTT-TT......................2040.250.000.000.250.000.00
..AATATATATATATGTA-TGTAC.....................................................................................................21400.030.000.000.030.000.00
..................................................................................TTATTATTTGATTTTGTA-TG......................2020.500.000.500.000.000.00
290 scaffold_12967:765249-765376 + 50.46
TTTATACATTTGTTTATAATGCACATAATAA----ATGC-------CAACCATTCATCATGA-----AATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTATGCCCTTTTTTAAGCTCG--GTAGCAGGTTTGTTCTGACGATCAGTCTTTTGACATTAAGAGGGGTCATAGA-----TCGTTATCGTCTGCGTGTT---TCAATATT-TTTTTTGTAGTTTAAGACGTTTTTTAT
SizeHit CountTotal NormV116
Male body
V053
Unknown
V047
Embryo
M027
Male body
M028
Head
.....................................................................TCATAGA-----TCGTTATCGTCAGCGTGT........................................2511.001.000.000.000.000.00
..........................................................................................................ATGTT-TTTTTTGTAGTCT..............1830.330.000.000.000.000.33
.....................................................................TCATAGA-----TCGTTATCGTCAGCGT..........................................2311.001.000.000.000.000.00
131 scaffold_12855:6889078-6889201 + 49.87
TTTATACATTTGTTTATAATGCACATAATAAAT------GCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTCACATTCATAACTATATAATTTATTTTTGATATTAAACCAAA---TCAGTTACCGAAATAAAAACATTACTTTTGTATGCTTCAAAGTAATAAAG-ATTCCGA-AGGGGCTCCAAGGCATATTTAAT
SizeHit CountTotal NormV116
Male body
V053
Unknown
V047
Embryo
M027
Male body
M028
Head
............................................................TAAAAACATTGGTTTTGT...................................................1811.000.000.000.001.000.00
..........................................................AATAAAAACATTGGTTTTGT...................................................2011.001.000.000.000.000.00
...........................................................ATAAAAACATTGGTTTTGT...................................................1911.001.000.000.000.000.00
955 scaffold_12961:104480-104600 - 49.23
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT----------------------------------------------
TTTGCACTGGTGCCGCTAACACGTGT-----ATCTTAACCGATCTTAATGAAATTTTCTACAGTAT-------------------------------------------AGAATATCTCTACATTCTTTAAAAGTAAATTGCATTAAAATTCTAGCTTAAATTGGTGGG
SizeHit CountTotal NormV116
Male body
V053
Unknown
V047
Embryo
M027
Male body
M028
Head
...................................TAACCGATCTTAAGGAAAT...................................................................................................................1990.110.000.000.000.110.00
.....................................................................................................................................................TTGTGGCTTAAATTGGTGG.1930.330.330.000.000.000.00
...................................................................................................................................................AATTGTGGCTTAAATTGGTGG.2130.330.330.000.000.000.00
....................................AACCGATCTTTATGAAATATT................................................................................................................21110.090.090.000.000.000.00
.................................TTTAACCGATCTTTATGAAAT...................................................................................................................21110.090.090.000.000.000.00
...................................TAACCGATCTTAAGGAAATTTTCGACAGT.........................................................................................................2911.000.000.000.001.000.00
..........................................TCTTAAGGAAATTTTCGACAG..........................................................................................................2111.000.000.000.001.000.00
795 scaffold_12855:9530812-9530935 - 49.16
TTTATACATTTGTTTATAATGCACATAATAAA--TGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGT------------AAGGCTTTATTTTGTTTTGCA-ATCAAAGACATCTTTCTT------------------------------
CTGGTAAATTATATAATAATGCACATAATATACATGC--------------------------------------------ATAATATACATATATCAACTGCTTTATTCCTTTACACATATTCGAGACATTCTTTAAAAATTCTTGAAAATTTGGCGCATACCAAAA
SizeHit CountTotal NormV116
Male body
V053
Unknown
V047
Embryo
M027
Male body
M028
Head
...........................................................................................................................CGAGACAxTCTTTAAAATTTC........................2011.000.001.000.000.000.00
............................TATCCATGG--------------------------------------------ATAATATACA.............................................................................1911.000.000.001.000.000.00
...........................................................................................................................CCAGACAATCTTTAAAAATT.........................2011.000.001.000.000.000.00
1016 scaffold_13036:653970-654081 - 48.91
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TCCAAGGGTTTTTATTCAATGAACTTTGACAATG-CAACCGTCCAACATGCAATTAAGGCGATGATGACTTACAAACGTCGG-TGAATGTAAATTT---------GTAAACGACGTTTTTCTA
SizeHit CountTotal NormV116
Male body
V053
Unknown
V047
Embryo
M027
Male body
M028
Head
............................................................................................ATTT---------GCAAACGATGTTTTT...1920.500.000.000.500.000.00
.............ATTCCATGAACTTTGAGA............................................................................................1820.500.000.000.000.000.50
............................................................................................ATTT---------GTAAACGACGTTGCTC..2011.000.000.000.000.001.00
............................................................................................AATT---------GTAAACGACTTTTTT...1911.000.000.001.000.000.00
422 scaffold_13049:23838528-23838652 + 48.78
TTTATACATTTGTTTATA-ATGCACATAATAAATG--CCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTT-TCTT
TTCAAACATCCAAACATCCTTAAACTTGGTACTTGGTCCAATAATTTGTCGAGAAATAATAAATTGAAATAAA--ATGTTCTTTAATGTAGCGCCCACTCGTGAAGCGATAAAAAGTATTGTGCCTT
SizeHit CountTotal NormV116
Male body
V053
Unknown
V047
Embryo
M027
Male body
M028
Head
......................................................CATAATAAATTGAAATAT.......................................................1820.500.000.000.500.000.00
1063 scaffold_13047:17162758-17162864 - 48.23
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATA----------------------------------GTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTATACACAT---------------TAT--AT----TTTAATTATCATGTAACTAAAAGTAAATTTAGAACAAATGAATGTTCATCTAAATAACAATAAATTTCTTAATTGCTTGCTAACGTCTT-----------------------------CT
SizeHit CountTotal NormV116
Male body
V053
Unknown
V047
Embryo
M027
Male body
M028
Head
.......................................................AAAAGTAAATTTAGGAAAA...................................................................................1911.001.000.000.000.000.00
710 scaffold_12734:498613-498711 - 48.13
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAA---TCAAAGACATCTTTCTT
T-------------------GCATATAACCGATCTTAACCGATCTTTATGAAATTTTCTACAGTATA---TCTCACTGTACCATAGAATATTTGTGTATTCTGAAAAATTCAATTGCA-----TTT
SizeHit CountTotal NormV116
Male body
V053
Unknown
V047
Embryo
M027
Male body
M028
Head
...................................................................................................TCTGAAAAAGTCAATTGCA-----TT.2160.170.000.000.000.170.00
....................................AACCGATCTTTATGAAATATT.....................................................................21110.090.090.000.000.000.00
.......................................................................................ATATTTGTGTATTCTGAAAAAGTCAATT...........2830.330.330.000.000.000.00
.........................TAAACGATCTTAACCTAT...................................................................................1811.000.000.001.000.000.00
...................................TAACCGATCTTAAGGAAAT........................................................................1990.110.000.000.000.110.00
.................................TTTAACCGATCTTTATGAAAT........................................................................21110.090.090.000.000.000.00
193 scaffold_12936:417722-417850 + 47.94
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGG-----------------------TAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TATATGCATTTTTAAAT-----------------GCAACCGGCAAACCCAAAGTTGCAGACATAAATGCACTAATTTGTATACTGAAGAAGTCAATTGCATTTAAATAGTGGGTTAAATTGTTAGGCAATAAAGGTTGGGTTGTTA
SizeHit CountTotal NormV116
Male body
V053
Unknown
V047
Embryo
M027
Male body
M028
Head
.................................................................................................................................................T2430.330.330.000.000.000.00
.................................................................................................................................................T2630.330.330.000.000.000.00
514 scaffold_13100:5022-5117 + 47.93
TTTATACATTTGTTTAT-AATGCAC---ATAATAAATGCCAAC--CATTCATCATGAAATTATA-AATAGTATCATTT-CAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTATTTATTTATTTATTAATGGTCGATAAAACGAGTGTCTTCCTCATTATTCAATAGATTATACCATAGAATTATATGCTAAAAGCAGAGTTAAG-----------------------------------
SizeHit CountTotal NormV116
Male body
V053
Unknown
V047
Embryo
M027
Male body
M028
Head
.................TAATGGTCGACAAAACGAGTGTCT..........................................................................................24354.0014.670.3332.336.670.00
.................TAATGGTCGACAAAACGAGTGT............................................................................................22314.6710.330.001.332.670.33
.................TAATGGTCGACAAAACGAGTGTCTTC........................................................................................26310.6710.670.000.000.000.00
.................TAATGGTCGACAAAACGAGT..............................................................................................2039.679.000.000.000.670.00
.................TAATGGTCGACAAATCGAGTGTCT..........................................................................................2436.673.330.003.330.000.00
.................TAATGGTCGACAGAACGAGTGTCT..........................................................................................2436.330.000.006.330.000.00
.................TAATGGTCGACAAAACGAGTGTCTT.........................................................................................2533.670.000.003.670.000.00
.................TAATGGTCGACAAAACGAGTGTC...........................................................................................2333.331.670.001.000.670.00
.................TAGTGGTCGACAAAACGAGTGTCT..........................................................................................2433.000.670.000.671.670.00
.................TAATGGTCGACAAAGCGAGTGTCT..........................................................................................2433.001.670.001.330.000.00
.................TAATGGTCGACAAAACGAGTGTCGTC........................................................................................2632.330.000.002.330.000.00
.................TAATGGTCGACAAAACGAGTGCCT..........................................................................................2432.000.000.000.331.670.00
.................TAATGGTCGACAAAACGAG...............................................................................................1932.001.670.000.000.330.00
.................TAATGGTCGACAAATCGAGTGT............................................................................................2232.001.000.001.000.000.00
.................TAATGGTCGACAAAACGAGAGT............................................................................................2232.002.000.000.000.000.00
.................TAATGGTCGACAAATCGAGTGTC...........................................................................................2331.671.000.000.330.330.00
.................TAGTGGTCGACAAAACGAGTGT............................................................................................2231.671.330.000.000.330.00
.................TAATGGTCGACAAAACGAGAGTCT..........................................................................................2431.671.670.000.000.000.00
.................TAATGGTCGACAAAACGAGTGTCTCC........................................................................................2631.331.000.000.000.330.00
..................AATGGTCGACAAAACGAGTGT............................................................................................2131.331.000.330.000.000.00
................TTAATGGTCGACAAAACGAGT..............................................................................................2131.331.330.000.000.000.00
.................TAATGGTCGACAAAACGAGTG.............................................................................................2131.330.330.000.001.000.00
.................TAATGGTCGACAAAACGAGTGC............................................................................................2231.331.330.000.000.000.00
.................TAATGGTCGACAAAACAAGTGT............................................................................................2231.000.330.000.670.000.00
.................TAATGGTCGACAAAACGA................................................................................................1831.000.000.000.330.670.00
.................TAGTGGTCGACAAAACGAGTGTC...........................................................................................2331.000.000.000.001.000.00
................TTAATGGTCGACAAAACGAGTGT............................................................................................2331.000.330.000.330.330.00
.................TAATGGTCGACAAAACGAGTATCT..........................................................................................2431.000.000.001.000.000.00
................TTAATGGTCGACAAAACGAGTGTCT..........................................................................................2531.000.330.000.000.670.00
.................TAATGGTCGACAAAACGAGTGTCC..........................................................................................2431.000.330.000.000.670.00
.................TAATGGTCGACAAAATGAGTGTCT..........................................................................................2431.000.330.000.330.330.00
781 scaffold_12855:7139070-7139187 - 47.66
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATG---------AAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAA-GACATCTTTCTT
TTTTCTGAATGATTTGTAATCAAAGTAGTT--CTTCAATCATTCAAAATCATCATACAAAAATCATAAAAGGCACCATTGCAT-------------CCACCAATTCTTTTTAAAACCATAATTAAACTCCCTT
SizeHit CountTotal NormV116
Male body
V053
Unknown
V047
Embryo
M027
Male body
M028
Head
.......................................................ACAGAAACCATAAAAGGC............................................................1840.500.000.000.000.500.00
....................................................CATACAGAAATCATGAAAGGC............................................................2111.001.000.000.000.000.00
.....................................................ATACAAAAACCATGAAAGGC............................................................2011.000.000.001.000.000.00
.......AATGATGTGTTATCAAAG............................................................................................................1811.000.000.001.000.000.00
772 scaffold_12855:6008993-6009125 - 47.2
TTTATACATTTGTTTATAATGCACATAATAAATGCC-----AAC--CATTCATCATGAAATTAT--AAATAGTATCATTTCAAGATG-CATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
CTTTCCATTTTGCTTGTCATTCGCCTTATAAATTATTCGTAAGCATTATAAATCATCATAATATCGGACCAGTATAGCATATACCTGCCACTGGAACGATCTACTTTTTTTTCAAGATATTTGCATCAATCTC
SizeHit CountTotal NormV116
Male body
V053
Unknown
V047
Embryo
M027
Male body
M028
Head
..................................................................................AGCTGCCATTGGAACGATCT...............................2080.130.000.000.130.000.00
...........................................................AATATCGGACCAGTATACCTT.....................................................2111.001.000.000.000.000.00
.....................................CGAAAGCATTATAAATCCT.............................................................................1911.000.000.001.000.000.00
85 scaffold_12736:86970-87092 + 46.52
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTT------CAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTTTTGTTCGAATTATAAAGAACAAATCACTCTTTTATTTCTTATTTGGAGAATAAAAATAATATTAATTAAATTTAAAGAAATTATGTAAATATTTGCATCGACTAA------GAAATACATATTTT
SizeHit CountTotal NormV116
Male body
V053
Unknown
V047
Embryo
M027
Male body
M028
Head
...............................................................................................TTTGCATCGACTTA------GAAATACATATTT.2733.001.670.001.000.330.00
...............................................................................................TTTGCATCGACTTG------GAAATAC.......2132.331.000.330.000.670.33
...............................................................................................TTTGCATCGACTTA------GAAATACATATT..2632.001.330.000.330.330.00
...............................................................................................TTTGCATCGACTTA------GAACTACATATT..2621.500.500.000.001.000.00
...............................................................................................TTTGCATCGACTTA------GAAATACATA....2430.670.330.000.000.330.00
...............................................................................................TTTGCATCGACTTA------GAACTACA......2230.670.670.000.000.000.00
..............................................................................................ATTTGCATCGACTAA------GAAAT.........2011.000.000.000.000.001.00
...........................................TAATTGGAGAATAAAAATAATATTAAT...........................................................2720.500.500.000.000.000.00
...........................................................................................AATATTTGCATCGACTAA------GA............2020.500.000.000.500.000.00
......................................................................................ATGTAAATATTTGCATCGACTAA------GAAAT.........2811.000.000.001.000.000.00
...........................................TAATTGGAGAATAAAAATAATATGAATT..........................................................2820.500.500.000.000.000.00
.........................................................................................TAAATATTTGCATCGACTTG------GA............2240.250.250.000.000.000.00
..............................................................................................ATTTGCATCGACTAA------GAAATACAT.....2411.001.000.000.000.000.00
..................................................................................AATTATTTAAAxATTTGCAT...........................1911.000.000.001.000.000.00
...............................................................................................TTTGCATCGACTTA------GAAATACATAT...2530.330.330.000.000.000.00
........................................TCTTAATTGGAGAATAAAAATAATATT..............................................................2720.500.500.000.000.000.00
...........................................TAATTGGAGAATACAAATAATATTAATT..........................................................2820.500.000.000.500.000.00
..............................................................................................ATTTGCATCGACTTG------GAAA..........1930.330.000.000.000.330.00
........TCGAATTATAAAGAACAAAGTACTC................................................................................................2511.000.000.001.000.000.00
...................................................................................ATTTTGTAAATATTTGCATCGACT......................2430.330.000.000.000.000.33
.........AGAATTATAAAGAACAATT.....................................................................................................1911.000.000.001.000.000.00
...........................................TAATTGGAGAATACAAATAATATT..............................................................2420.500.000.000.500.000.00
...............................................................................................TTTGCATCGACTTG------GAAATA........2030.330.330.000.000.000.00
...............................................................................................TATGCATCGACTAA------GAAATACATATTC.2711.001.000.000.000.000.00
...............................................................................................TTTGCATCGACTTA------CAAATA........2040.250.000.250.000.000.00
............................................................................................ATATTTGCATCGACTTG------GAAAT.........2230.330.000.000.000.330.00
...............................................................................................TTTGCATCGACTTG------GAAAT.........1930.330.000.000.000.000.33
.........................................................................................TAAATATTTGCATCGACTTA------..............2050.200.200.000.000.000.00
................................................................................................TTGCATCGACTTG------GAAAT.........1830.330.000.000.000.330.00


droMoj3 - 135 hits found

Lastz ID Coordinate Normalized Identity % Sequence RNAfold UNAfold
1172 scaffold_6308:1934837-1934961 - 54.55
TTTATACATTTGTTTATAATGCACATA-ATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCAT--TTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTATATATTATAAAAAAAATTACTTAAATTAAAGCTTAGGAAATATT-TGTATCCATAAAAAATATGATATATTTTTATGCATGGTAAATTTAATTTTTAATTTCTAATAAAAAAAATTATATAT
SizeHit CountTotal NormV110
Male body
V056
Unknown
V049
Head
V041
Embryo
1530 scaffold_6498:1422271-1422396 - 54.34
TTTATACATTTGTTTATAATGC--ACATAATAAATGCCAACCATTCATCATGAAATTATAAATAG--T-ATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTATAAAGTTTA--AAAGTCCAAAAATATAAAATGCCAAAAATACACTTTTTAATAATTAACTTATTTTTTTTTTAATTTCGAATTTTGAATTTTTTATTTATTTTTTGAACAGTCAGGTTTTAATC
SizeHit CountTotal NormV110
Male body
V056
Unknown
V049
Head
V041
Embryo
.....................................................................................................TATTTTTTGAACAGTCAGGTT......2140.500.500.000.000.00
....................................................................................................TTATTTTTTGAACAGTCATGT.......2140.250.250.000.000.00
............A--AAAGTCCAAAAATATAAAAA.............................................................................................21110.090.090.000.000.00
.................................................................................................TATTTATTTTTTGAACAGTCAG.........2240.250.250.000.000.00
....................................................................................................TTATTTTTTGAACAGTCAGGT.......2140.250.250.000.000.00
..................................................................................................ATTTATTTTTTGAACAGTCAG.........2140.250.250.000.000.00
346 scaffold_6482:2414066-2414190 + 53.69
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAA--AGACATCTTTCTT
TTTATAAAGTTTAAAAGTCCAAAAATATAAAAAGCCAAAAATACACTTTTTAATAATTAACTTTTTTTTTTAATTTCGAATTTTGAATTTTTTATTTATTTTTTGAACAGTCAGGCTTTAATCTT
SizeHit CountTotal NormV110
Male body
V056
Unknown
V049
Head
V041
Embryo
................................................................................................TATTTTTTGAACAGTCAGGTT........2140.500.500.000.000.00
.............................................................................................ATTTATTTTTTGAACAGTCAG...........2140.250.250.000.000.00
.................................................ATAATAATTATCTTTTTTT.........................................................1990.110.000.000.000.11
...............................................................................................TTATTTTTTGAACAGTCATGT.........2140.250.250.000.000.00
............AAAAGTCCAAAAATATAAAAA............................................................................................21110.090.090.000.000.00
...............................................................................................TTATTTTTTGAACAGTCAGGT.........2140.250.250.000.000.00
............................................................................................TATTTATTTTTTGAACAGTCAG...........2240.250.250.000.000.00
750 scaffold_6540:6497032-6497155 + 53.51
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCA-TTCATCATGAA--ATTATAAATAGTATCATTTCAAG--ATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTATTCTCATTTTTCTAATTGATTAATTTAATTTTATTTTTTTCATCAATTATTATTCTAAAATTTATTATTATATCACAGCCAATTTATTTTTATTTTTTCTTTCGCAATCGATTAGTTCT----T
SizeHit CountTotal NormV110
Male body
V056
Unknown
V049
Head
V041
Embryo
..........................................................................................................GGCAACCGATTAGTTCT----T1811.000.000.000.001.00
1280 scaffold_6473:1203915-1204034 - 53.05
TTTATACATTTGTTTATA-ATGCACATA---ATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTAAATATTTATTTTTACATACATATATGCATAGCTGTCAATATTTCAGCTTGATC-----ATTTGCTTTCAATTGAAATGTCGAGCGAACCAATTTCTTGT--TGATTTTTAAAAAGTCTTTTGT
SizeHit CountTotal NormV110
Male body
V056
Unknown
V049
Head
V041
Embryo
1586 scaffold_6500:13056066-13056180 - 52.07
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCAT-GAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTTTATTTATTGTAACAATATACATAATATGTAGCTACAAAGTATCACTGAGTTTGTTAAATGGCTTAATTCATGCATTATTCAGTGCTTCTACTTTATATTATTAACCAAAAC---------
SizeHit CountTotal NormV110
Male body
V056
Unknown
V049
Head
V041
Embryo
......................................CAAAGTATCACxGAGTTTGTTA................................................................2111394.001330.0029.0016.0019.00
......................................CAAAGTATCACxGAGTTTGTT.................................................................201749.00689.0033.0021.006.00
......................................CAAAGTATCACxGAGTTTGT..................................................................191600.00526.0048.0016.0010.00
.......................................AAAGTATCACxGAGTTTGTTA................................................................201457.00423.0013.0012.009.00
........................................AAGTATCACxGAGTTTGTTA................................................................191259.00222.0019.007.0011.00
.......................................AAAGTATCACxGAGTTTGTT.................................................................191257.00236.0012.006.003.00
.....................................TCAAAGTATCACxGAGTTTGTTA................................................................221231.00216.0011.001.003.00
.....................................TCAAAGTATCACxGAGTTTGT..................................................................201102.0087.008.004.003.00
.....................................TCAAAGTATCACxGAGTTTG...................................................................19192.0088.001.002.001.00
.....................................TCAAAGTATCACxGAGTTTGTT.................................................................21187.0072.0011.004.000.00
......................................CAAAGTATCACxGAGTTTG...................................................................18160.0040.0011.007.002.00
......................................CAAAGTATCACxGAGTTTGTTATA..............................................................23152.0051.000.000.001.00
........................................AAGTATCACxGAGTTTGTT.................................................................18144.0016.0015.0010.003.00
......................................CAAAGTATCACxGAGTTTGTTAT...............................................................22143.0039.001.002.001.00
.......................................AAAGTATCACxGAGTTTGT..................................................................18138.0021.008.006.003.00
.......................................AAAGTATCACxGAGTTTGTTATA..............................................................22126.0020.004.001.001.00
.........................................AGTATCACxGAGTTTGTTA................................................................18123.0014.004.003.002.00
........................................AAGTATCACxGAGTTTGTTATA..............................................................21123.0022.001.000.000.00
......................................CAAAGTATCACxGAGTTTGTTATAT.............................................................24113.008.003.002.000.00
.........................................AGTATCACxGAGTTTGTTATA..............................................................2019.008.000.000.001.00
.......................................AAAGTATCACxGAGTTTGTTAT...............................................................2116.006.000.000.000.00
.........................................AGTATCACxGAGTTTGTTAT...............................................................1915.004.000.001.000.00
..........................................GTATCACxGAGTTTGTTATA..............................................................1915.003.001.000.001.00
............................................ATCACxGAGTTTGTTATAT.............................................................1815.001.003.001.000.00
.....................................TCAAAGTATCACxGAGTTT....................................................................1814.001.001.001.001.00
........................................AAGTATCACxGAGTTTGTTAT...............................................................2014.004.000.000.000.00
......................................TAAAGTATCACxGAGTTTGTTA................................................................2113.003.000.000.000.00
......................................CAAAGGATCACxGAGTTTGTT.................................................................2013.003.000.000.000.00
...........................................TATCACxGAGTTTGTTATAT.............................................................1913.002.001.000.000.00
........................................AAGCATCACxGAGTTTGTTA................................................................1913.002.000.001.000.00
1918 scaffold_6680:19633015-19633129 - 52.05
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTT-CAAGATG---------CATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
CTTTTTATTTTAATTAAATTCAATATAATAATTT-----------------AATAATAAATATTAAAATAAATTAAATGAATAGACAGTAGTGGAAATCTTTACTTATATTTGCAAC-AAAATCATTTCATTT
SizeHit CountTotal NormV110
Male body
V056
Unknown
V049
Head
V041
Embryo
2 scaffold_30:2479-2602 + 51.84
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATC-----ATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTATACATTTATTCATCATAAATATATAATGTGATATACCATATTTACATACTTACTAGTTGTCCCGGCGAACTTCGTACCGCATAACAG----TCTCTATATATATAAAACAAAGTCGAGTTTGTT
SizeHit CountTotal NormV110
Male body
V056
Unknown
V049
Head
V041
Embryo
.....................................................TTGCTAGTTGACCCGGCGAACTTCG..................................................25113.0013.000.000.000.00
.....................................................TTGCTAGTTGACCCGGCGAACTTCGTA................................................27111.0011.000.000.000.00
.....................................................TTGCTAGTTGACCCGGCGAACTTCGT.................................................2617.007.000.000.000.00
.........................................................TAGTTGACCCGGCGAACTTCGTATC..............................................2514.004.000.000.000.00
.........................................................TAGTTGACCCGGCGAACTTCGTATCGC............................................2714.004.000.000.000.00
......................................................TGCTAGTTGACCCGGCGAACTTCGTA................................................2613.003.000.000.000.00
......................................................TGCTAGTTGACCCGGCGAACTTCG..................................................2412.002.000.000.000.00
......................................................TGCTAGTTGACCCGGCGAACTTCGT.................................................2512.002.000.000.000.00
.......................................................GCTAGTTGACCCGGCGAACTTCGTA................................................2511.001.000.000.000.00
.......................................................................................................TATATAAAACAAAGTCGAGTTTGTC2511.001.000.000.000.00
.........................................................TAGTTGACCCGGCGAACTTCGTAT...............................................2411.001.000.000.000.00
.......................................................ACTAGTTGTCCCGGCGAACTT....................................................2111.001.000.000.000.00
............................................................................................................AGAAGAAAGTCGAGTTTG..1811.000.001.000.000.00
.....................................................TTGCTAGTTGACCCGGCGAACTTCGTACC..............................................2911.001.000.000.000.00
.....................................................TTGCTAGTTGACCCGGCGAACT.....................................................2211.001.000.000.000.00
.........................................................TAGTTGACCCGGCGAACTTCGTA................................................2311.001.000.000.000.00
.............................................................TGACCCGGCGAACTTCGTATC..............................................2111.001.000.000.000.00
........................................................CTAGTTGACCCGGCGAACTTCGTATC..............................................2611.001.000.000.000.00
............................................................TTGACCCGGCGAACTTCGTATCGC............................................2411.001.000.000.000.00
.............................................................TGACCCGGCGAACTTCGTA................................................1911.001.000.000.000.00
.......ATTCATTGATCATAAATAT......................................................................................................1911.000.000.001.000.00
.....................................................TTGCTAGTTGACCCGGCGAACTTC...................................................2411.001.000.000.000.00
..........................................................................TTCGTACCGCCTAACAG----TCTC.............................2111.001.000.000.000.00
1388 scaffold_6482:1362846-1362969 - 51.79
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCA-------------TGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTAATAACTCTTTTTTAAAGTTCTTAA-ATATGAATATTCTTAATAATATACA----TGAAGTTTG-CTTAAAGATTGATCTATTGATAAAACTGCAATGATTTAG------TTGCCCTTCGGCAGATTGTTATT
SizeHit CountTotal NormV110
Male body
V056
Unknown
V049
Head
V041
Embryo
1145 scaffold_6152:868-985 - 51.76
TTTATACATT-TGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGT-----ATCATTTCAAGATGCATG-GTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TATATACTATTTTTAGGTGGTAGGT---ATCAATACAAGACAGTGATTATGGAATTTTACTTATTTAATAAAC----CTAAATAAATATATAAAAG---GT--TTTATTACGGTCAGAAAAGGCTATCTT
SizeHit CountTotal NormV110
Male body
V056
Unknown
V049
Head
V041
Embryo
........................................................................................................TTATTACGGTCAGAAAAGGCTATCTT2614.004.000.000.000.00
.............TAGGTGGTAGGT---ATCAATACAAGATAG.......................................................................................2714.002.000.000.002.00
........................................................................................................TTATTACGGTCAGAAAAGGCTATC..2413.001.000.000.002.00
.............TAGGTGGTAGGT---ATCAATACAAGAT.........................................................................................2512.002.000.000.000.00
........................................................................................................TTATTACGGTCAGAAAAGGC......2012.002.000.000.000.00
........................................................................................................TTATTACGGTCAGAAAAGGCTATCT.2511.001.000.000.000.00
.............TAGGTGGTAGGT---ATCAATACAAGACAG.......................................................................................2711.001.000.000.000.00
............TTAGGTGGTAGGT---ATCAATACAAGACA........................................................................................2711.001.000.000.000.00
......................................GACGGTGATTATGGAAGT..........................................................................1811.001.000.000.000.00
........................T---ATCAATACAAGATAGTGATTATGGA.............................................................................2611.000.000.000.001.00
.......TATTTTTAGGTGAGAGG..........................................................................................................1711.000.001.000.000.00
........................................................................................................TTATTACGGTCAGAAAAGGCTATCTC2611.001.000.000.000.00
...........TTTAGGTGGTAGGT---ATCAATACAAG...........................................................................................2511.001.000.000.000.00
...........TTTAGGTGGTAGGT---ATCAATACTA............................................................................................2411.001.000.000.000.00
.............TAGGTGGTAGGT---ATCAATACAAGATT........................................................................................2611.000.000.000.001.00
.............TAGGTGGTAGGT---ATCCATACAAGATAG.......................................................................................2711.000.000.000.001.00
...........................................TGATTATGGAATTTTAATTAGT.................................................................2211.000.000.000.001.00
................................ATACAAGATAGTGATTATGGAATTTTA.......................................................................2711.001.000.000.000.00
.............TAGGTGGTAGGT---ATCAATACAAGACA........................................................................................2611.001.000.000.000.00
851 scaffold_6541:1056700-1056828 + 51.63
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCA-TCATGAAATTATAAATAGTATCATT--TCAAGATGCATGGTAAGGCTTTATTTTG-TTTTGCAATCAAAGA-CATCTTTC-TT
TTAATAAAATCAGCTTGAGCAGAAATAATGTTTTCCACACTTTCGTTCATATTGTTATTCATTTTCTCAACGATAAAAATTTTTGTTTAAGCTCTTTTCCAGTTTTAAAATATAAAGTTTTCTTTTTAT
SizeHit CountTotal NormV110
Male body
V056
Unknown
V049
Head
V041
Embryo
...AxAAAACGAGCTTGAGCAGA..........................................................................................................1911.000.001.000.000.00
...........................................................................AAAATTTTTTTTTAAGCTTTTT................................2211.000.000.000.001.00
85 scaffold_4282:3786-3912 + 50.26
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAA--GATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAA--AGACATCTTTCTT
TTTATAAATTTTAAAAGTCCAAAAATATAAAAAGCCAAAAATACACTTTTTAATAATTAACTTTTTTTTTTTTAATTTCGAATTTTGAATTTTTTATTAATTTTTTGAACAGTCAGGTTTTAATCTT
SizeHit CountTotal NormV110
Male body
V056
Unknown
V049
Head
V041
Embryo
..................................................................................................TATTTTTTGAACAGTCAGGTT........2140.500.500.000.000.00
.................................................................................................TTATTTTTTGAACAGTCATGT.........2140.250.250.000.000.00
.................................................ATAATAATTATCTTTTTTT...........................................................1990.110.000.000.000.11
..............................................................................................TATTTATTTTTTGAACAGTCAG...........2240.250.250.000.000.00
............AAAAGTCCAAAAATATAAAAA..............................................................................................21110.090.090.000.000.00
.................................................................................................TTATTTTTTGAACAGTCAGGT.........2140.250.250.000.000.00
...............................................................................................ATTTATTTTTTGAACAGTCAG...........2140.250.250.000.000.00
1909 scaffold_6680:16691806-16691917 - 49.67
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTATATATCTATTTATCTCTCACATAATTCTTGAG--------GTCATGCAACTCTTAAC---TTCTTTGGGTCTTGCATTTTTATTTTTTTATTAATTTTTTTTTCAAATAAATTTTTGGC
SizeHit CountTotal NormV110
Male body
V056
Unknown
V049
Head
V041
Embryo
616 scaffold_6500:29468206-29468321 + 49.07
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCAT---GAAATTATAA---------------ATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTG--TTTTGCAATCAAAGACATCTTTCTT
CTCTCACATTTGT--AAAAGGCGTATTTCAAATACTAGGGACGTGTGCTTTGGCAAATACATGCATATCTATGTTAACTTG-------------------------TTTTATGCTGAAATTTGTTGTCATCGCGATTTTTTTT
SizeHit CountTotal NormV110
Male body
V056
Unknown
V049
Head
V041
Embryo
...........................TCAAATACTAGGGACTTGTGCT..............................................................................................2280.880.880.000.000.00
...........................TCAAATACTAGGGACTTTTGCTTTGG..........................................................................................2660.830.330.000.000.50
...........................TCAAATACTAGGGACTTGTGCTTTGG..........................................................................................2680.630.000.000.000.63
...........................TCAAATACTAGGGACTTGTGCTT.............................................................................................2380.630.380.000.000.25
...........................TCAAATACTAGTGACTTGTGCTTTGG..........................................................................................2680.500.000.000.000.50
...........................TCAAATACTAGGGACTTGTGCTTTGGCA........................................................................................2870.430.430.000.000.00
...........................TCAAGTACTAGAGACGTGTGCTTT............................................................................................2480.380.250.000.000.13
...........................TCAAGTACTAGAGACGTGTGCTTTGG..........................................................................................2680.380.000.000.000.38
...........................TCAAGTACTAGAGACGTGTGCT..............................................................................................2280.250.000.000.000.25
.............................AAATACTAGGGAATTGTGCTTTGGC.........................................................................................2560.330.330.000.000.00
...........................CCAAATACTAGGGACGTGTGCTA.............................................................................................2312.002.000.000.000.00
...........................TCAAATACTAGGGACGTGTGCTTTGG..........................................................................................2612.000.000.000.002.00
...........................TCAAGTACTAGAGACGTGTGC...............................................................................................2180.250.000.000.000.25
...........................TCAAATACTAGAGACxTGTGCTTTGG..........................................................................................2580.250.000.000.000.25
.....ACTTTTGT--AAAAGGCGTGTTTCAAA...............................................................................................................2560.330.330.000.000.00
.............................AAGTACTAGAGACGTGTGCTTTGG..........................................................................................24110.180.090.000.000.09
...........................TCAAATACTAGGGACTTGTGCTTTGA..........................................................................................2660.170.170.000.000.00
..........................TTCAAATACTAGGGACTTGTGCT..............................................................................................2380.130.130.000.000.00
...........................................TGTGCTTTGGCAAATACATGC...............................................................................21120.080.000.000.000.08
...........................TCAAATAGTAGGGACTTGTGCTTTGG..........................................................................................2660.170.170.000.000.00
.................AAGGCGTATTTCAAATACTAGA........................................................................................................2290.110.000.000.110.00
.......................TATTTCAAATACTAGAGACxTGTGCT..............................................................................................2580.130.130.000.000.00
.........................TTTCAAATACTAGGGACTTGTGCTT.............................................................................................2580.130.130.000.000.00
...........................TCAAATACTAGGGACTTGTGC...............................................................................................2180.130.000.000.000.13
....................GCGTATTTCAAATACTAGAG.......................................................................................................2090.110.000.000.110.00
...........................................................................................................TTTATGCTGAAATTTGTTGTC...............2111.001.000.000.000.00
...........................TCAAATACTAGTGACTTGTGCT..............................................................................................2280.130.000.000.000.13
......CATTTGT--AAAAGGCGTATTTC..................................................................................................................2160.170.170.000.000.00
...........................TCAAATACTAGGGACGTGTGCTTT............................................................................................2411.001.000.000.000.00
...........................TCAAATACTAGGGACTTGTGCTA.............................................................................................2360.170.170.000.000.00
...........................TCAAATACTAGGGACTTTTGCTTT............................................................................................2460.170.170.000.000.00
.......................TATTCCAAATACTAGGGACGTGTGC...............................................................................................2511.001.000.000.000.00
.......TTTTGT--AAAAGGCGTATTTTA.................................................................................................................2180.130.130.000.000.00
......................GTATTTCAAATACTAGGGACT....................................................................................................2190.110.110.000.000.00
...............................GTACTAGGGACGTGTGCTTTGGA.........................................................................................2340.250.000.000.000.25
............................CAAATACTAGGGACTTTTGCTTTGG..........................................................................................2560.170.000.000.000.17
..........TGT--GAAAGGCGTATTTCAAATACA...........................................................................................................2430.330.000.000.000.33
...........................TCAAATACTAGAGACxTGTGCTTTGGC.........................................................................................2670.140.000.000.000.14
........................ATTTCAAATACTAGGGACGTGTGC...............................................................................................2411.001.000.000.000.00
...........................................TGTGCTTTGGAAATTACATGC...............................................................................21130.080.080.000.000.00
.............................AAATACTAGTGACTTGTGCTTTGG..........................................................................................24100.100.000.000.000.10
...........................TCAAATACTAGCGACTTGTGCTTTGG..........................................................................................2690.110.000.000.000.11
.............................AAATACTAGGGACTTTTGCTTTGG..........................................................................................2470.140.000.000.000.14
...........................................................................................................TTTATGCTGAAATTTGTTGTCA..............2211.001.000.000.000.00
...........................TCAAATACTAGGGAATTGTGCTTTGGCA........................................................................................2860.170.170.000.000.00
...........................TCAAATACTAGGGACTTGTGCTTTG...........................................................................................2580.130.130.000.000.00
...........................TCAAATACTAGGGACTTGTGCTTTGT..........................................................................................2660.170.170.000.000.00
............T--ACAAGGCGTATTTCAAGTACT...........................................................................................................2250.200.200.000.000.00
..........................TTCAAATGCTAGGGACTTGTG................................................................................................2160.170.170.000.000.00
...........................TCAAATACTAGGGACTTGTGCTTC............................................................................................2460.170.170.000.000.00
..........................................................................................................TTTTATGCTGAAATTTGTTGTCATT............2511.001.000.000.000.00
..........TGT--AAAAGGCGTATTTCAAATA.............................................................................................................22100.100.000.000.000.10
........................................ACTTGTGCTTTGGCAAATGCA..................................................................................21120.080.000.080.000.00
...........................TCAAGTACTAGGGACTTGTGCTTTGG..........................................................................................2690.110.000.000.000.11
...........................TCAAATACTAGGGACTTGTGCTTT............................................................................................2480.130.130.000.000.00
..ATCACTTTTGT--AAAAGGCGTA......................................................................................................................2170.140.140.000.000.00
...........................TCAAATACTAGAGACxTGTGCTT.............................................................................................2280.130.130.000.000.00
........................ATTTCAAATAGTAGGGACTTGTGC...............................................................................................2460.170.170.000.000.00
.......................TATTTCAAACACTAGAGAC.....................................................................................................1990.110.000.000.000.11
...........................TCAAATACTAGCGACTTGTGCTTTG...........................................................................................2590.110.000.000.000.11
............T--AAAAAGCGTATTTCAAATAC............................................................................................................2180.130.130.000.000.00
...........................TCAAATACTAGTGACTTGTGCTTTG...........................................................................................2580.130.000.000.000.13
........................ATTTCAAATACTAGGGACTTGTGCTT.............................................................................................2680.130.130.000.000.00
...........................TCAAATACTAGGGACTTGTGCTTAGGC.........................................................................................2760.170.170.000.000.00
...........................TCAAATACTAGGGACTTGTGCTTCG...........................................................................................2560.170.000.000.000.17
...........................TCAAATACTAGAGACCTGTGC...............................................................................................2180.130.000.000.000.13
..........................TTCAAGTACTAGAGACGTGTGC...............................................................................................2280.130.000.000.000.13
...............AAAAGGCGTATTTCAAGTACTAGAGACG....................................................................................................2840.250.250.000.000.00
...........................................................................................................TTTATGCTGAAATTGGTTGTCATT............2411.001.000.000.000.00
...........GT--AAAAAGCGTATTTCAAATA.............................................................................................................2190.110.110.000.000.00
..........................TTCAAGTACTAGAGACGTGTGCTTTGG..........................................................................................2780.130.130.000.000.00
.....ACATTTGT--AAAGGGCGTATTTC..................................................................................................................2260.170.000.000.170.00
........TTTGT--AAAAGGCGTATTTCAAGTAC............................................................................................................2550.200.200.000.000.00
.............................AAGTACTAGAGACGTGTGC...............................................................................................19110.090.000.000.000.09
...........GT--AAAAGGCGTATTTCAAATA.............................................................................................................21100.100.100.000.000.00
...........................................................................................................TTTATGCTGAAATTTGTTGTCATT............2411.000.000.000.001.00
.............................AAATACTAGGGACTTGTGCTTTGGCA........................................................................................2680.130.130.000.000.00
...........GT--AAAAGGCGTATTTCAAATACTAGGGAC.....................................................................................................2930.330.330.000.000.00
...........GT--AAAAAGCGTATTTCAAATATT...........................................................................................................2390.110.110.000.000.00
1758 scaffold_6540:3448407-3448518 - 48.91
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTA-----------TCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
AATA-ACTTAATTTTTCGACGTACAATATTAATG--AACCTTTCAGAACGTAATCATAATG--TTTTAATGTATGTACATTCCA------------AAGCACAAGTTTCTAGTAC-----TTGAAATGCGTTTT
SizeHit CountTotal NormV110
Male body
V056
Unknown
V049
Head
V041
Embryo
.........................................................................TGTACATTCCG------------AAGCACAGGT............................2160.170.170.000.000.00
...........................................................................TACATTCCA------------AAGCACAAGTCTCT........................2350.200.200.000.000.00
.....................................................................TGTATGTACATTCCA------------AAGCA.................................2050.200.000.000.000.20
......................................ACTTTCAGAACGTAATCATAATG--.......................................................................2360.170.170.000.000.00
.....................................AACTTTCAGAACGTAATCATAATG--TTC....................................................................2740.250.000.000.000.25
...........................................................................................................TCTAGTAC-----TTGAAATGCGTTT.2111.001.000.000.000.00
.................................G--AAACTTTCAGAACGTAATCATAATG--T......................................................................27140.070.000.000.000.07
.........................................................................................................TCTCTAGTAC-----TTGAAATGGGTTTT2411.000.000.000.001.00
.....................................................................TGTGTGTACATTCCA------------AAGCACA...............................2250.200.000.000.000.20
.........................................TTCAGAACGTAATCATAATG--.......................................................................2060.170.170.000.000.00
.....................................................................TGTATGTACATTCCA------------AAGGACAAG.............................2450.200.000.000.000.20
...........................................................................TACATTCCA------------AAGCACAAGTCT..........................2170.140.140.000.000.00
................................................................................TCCA------------AAGCACATGTCTCTAGTAC-----..............2350.200.000.000.000.20
.........................................................................TATACATTCCA------------AAGCACAAGTCT..........................2370.140.140.000.000.00
..............................................AAGGTAATCATAATG--TAT....................................................................1830.330.330.000.000.00
...........................................................................................................CCTAGTAA-----TTGAAATGCGTTT.2111.001.000.000.000.00
1221 scaffold_6359:2731598-2731710 - 48.48
TTTATACATTTGTTTATAATGCACATAATAAATGCCAAC---CATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTT-----CTT
TTTATTTATTTTTTTTTAATAATGCTGATAGCTGTCAATGCTCAATCATCTTCTTATTCTAATTATTATTTTAAAAAAATGCTTTGCAA------------------AATTGAAAACAAATTTTAAAGCAT
SizeHit CountTotal NormV110
Male body
V056
Unknown
V049
Head
V041
Embryo
...........................................................TAATTGTTATTGTAAAAA......................................................1811.000.000.000.001.00
385 scaffold_6496:14219037-14219157 + 48.03
TTTATACATTTGTTTATAATGCACATAA--TAAATGCCAACCATTCATCATG----------------AAATTATAAATAGTATCATTTCAA--GATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTTTAATTTAATTGATAT-------AATTTCTGTGACAGCTTTTGATAATTTCTGTATTTTCTTTTAA------TATTTGTATCAGTTTTATCAAAG---CTTCTGACTTTATTTAAT------TAAATTAAAATATATATT
SizeHit CountTotal NormV110
Male body
V056
Unknown
V049
Head
V041
Embryo
......................................AACTTTTGATAATTGCTGT......................................................................................1915.005.000.000.000.00
.........................................................ATTTACTTTTAT------TATTTGT.............................................................1911.000.000.001.000.00
1751 scaffold_6540:3068471-3068601 - 47.84
TTTATACATTTGTTT-ATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATA--G------------TATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TAGATATACCTGTTTCTTAACGAATACAAAAAATGTTATAATATAAACGCGAAATTCTTGATAAAGAATTAATGATATTAACATAC-----CGCGTTGGAA-GCTTTAGTCTAAGCTGATTTTTACGATGAA-TCAGT
SizeHit CountTotal NormV110
Male body
V056
Unknown
V049
Head
V041
Embryo
1453 scaffold_6496:19491893-19492015 - 47.76
TTTATACATTTGTTTA--------------------------------------------TAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
CTTTTGCTTTTGGATATAAATAAGAACTGAGAATCCGAATCTCCGTTCAGGAGGGGCTCATAAAATATTTAGCATTTGCCTACTATGCTCGCTGATATTATTATTTAT----------------------------------TATTGTTTTCAAAAA----------
SizeHit CountTotal NormV110
Male body
V056
Unknown
V049
Head
V041
Embryo
387 scaffold_6496:15765681-15765803 + 47.7
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGC---------ATGGTAAGGC-TTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
CTTTAGATTTTTATTA-CATATTAATATTAAATGCAGAAAATTCA---AACAAGTATAAAAGCCATCAACTCTTGTTGCTCAAACAACATGCACAAACAACTGCTTGGATT-TAAGCCAGCAGCAT-----TT
SizeHit CountTotal NormV110
Male body
V056
Unknown
V049
Head
V041
Embryo
..........................ATTAAAxGCAGAAATTTCA---.....................................................................................1811.000.001.000.000.00
..................................CAGAAACTTCA---AACACGTA.............................................................................1911.001.000.000.000.00
1573 scaffold_6500:6471349-6471474 - 47.65
TTTATACATTTGTTTATAATGCACAT-------AATAAATGCCAACCATTCATCATGAAA--TTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TATACACACATGCATACAC-ACGCATCCACACGCATCCACACGCACCTATGATCACGCGCTCTGCTGAATAATTTCTTTTGTAGACATACAAT-----CTTAATGAAACTTTCAGAGCGTAATCATTTGGTT
SizeHit CountTotal NormV110
Male body
V056
Unknown
V049
Head
V041
Embryo
........................................................................................................GAAACTTTCAGAGCGTAATCATATGG..2680.500.380.000.000.13
........................................................................................................GAAACTTTCAGAGCGTAATCATATG...2580.250.130.000.000.13
................................................................................GTAGATATAGAAT-----CTTAATGAAACTTTCA..................29130.080.080.000.000.00
..................................................................................................CTTAATGAAAGTTTCAGAGCATAAT.........25340.030.030.000.000.00
...........................................................................................AT-----CTTAATGAAACTTTCAGTGC..............22320.030.000.000.000.03
..................................................................................................CTTAATGAAACTTTTAGAGCGTAATCATA.....29270.040.040.000.000.00
...............................................................................................................TCAGAGCGTAATCATATGGTG2170.140.140.000.000.00
.........................................................................................................AAACTTTCAGAGCGTAATCATATGGT.2660.170.170.000.000.00
........................................................................................................GAAACTTTCAGGGCGTAATCATAT....24120.080.080.000.000.00
........................................................................................................GAAACTTTCAGGGCGTAATCATATGG..2680.130.130.000.000.00
.............................................................................................................TTTCAGAGCGTAATCATATGGTA2370.140.000.000.000.14
.......................................................................................................TGAAACTTTCAGAGCGTAATC........21310.030.030.000.000.00
.............................................................................................................TTTCAGAGCGTAATCATATGGT.2260.170.170.000.000.00
..................................................................................................CTTAATGAAACTTACAGAGCGTAATCAT......28250.040.040.000.000.00
..................................................................................................CCTAATGAAACTTGCAGAGCGTAAT.........25470.020.020.000.000.00
...............................................................................................................TTAGAGCGTAATCATATGGT.2080.130.130.000.000.00
...............................................................................................................TCAGAGCGTAATCATATGGTT2250.200.200.000.000.00
..................................................................................................CTTAATGAAAGTTTCAGGGCGTAATC........26210.050.050.000.000.00
..........................................................................................................AACTTTCAGAGCGTAATCATATGG..24100.100.100.000.000.00
...........................................................................................AT-----CTTAATGAAACTTTCAGAGCGTAAT.........27780.010.010.000.000.00
..............................................................................................................TTCAGGGCGTAATCATGTGG..2050.200.200.000.000.00
...................................................................................................TTTATGAAACTTTCAGAGCGTGATCA.......26210.050.050.000.000.00
...................................................................................................TTCATGAAACTTTCAGAGC..............19340.030.030.000.000.00
........................................................................................................GAAACTTTCAGAGCGTAAGCATATGG..2680.130.000.000.000.13
..............................................................................................................TTCAGAGCGTAATCATATGGTT2250.200.200.000.000.00
................................................................................................................CAGAGCGTAATCATATGGTG2170.140.140.000.000.00
..............................................................................................................TTCAGAGCGTAATCATATGGT.2160.170.170.000.000.00
......................................................................................................ATGAAACTTTCAGAGCGTAAT.........21380.030.030.000.000.00


droGri2 - 29 hits found

Lastz ID Coordinate Normalized Identity % Sequence RNAfold UNAfold
8 scaffold_14906:7885716-7885837 + 56.33
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGG--TAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
ATTATTATTTTTTTTTTATTTCAAGT--TAATTTACAATTATCGAACCGGTTAAACTAAATTTTAGCTTATAGATATTTATTGCTTAATTAACTGTTTTTTTTTGTTGTTAAA-ACATTTTTTTT
SizeHit CountTotal NormV109
Male body
97 scaffold_15203:2023730-2023845 - 50.8
TTTATACATTTGTTTATA---ATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCA-----TTTCAAGATGCATGGTAAGGCTTTATTTTGTT-----TTGCAATCAAAGACATCTTTCTT
TGCACATATAAATACATACATAAATACAT---AAA----------------TACAAATATATACAGTAACGGGGGTCTGCAGAATACACACAAAGACATATTGACGCTCGCGTCGATTATC-ATGTCATCTTTTTC
SizeHit CountTotal NormV109
Male body
91 scaffold_15116:403798-403920 - 49.94
TTTATACATTTGTTTATAATGCACAT----AATAAATGCCAACCATTCATCATG---------AAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TACATACATATACATATA-TACGTATACGCAATCGTAGCAGGGTAAT------GGGGCTCTGCAGAATATACACAAAGGCATTTTGATCAGTAT---GAGGATATATTTTGGAATATAACTAGG---GTGTTTCTT
SizeHit CountTotal NormV109
Male body
..........................................................................................GTAT---GAGCATATATGTTGG........................19110.0010.00
.........................................................................................AGTAT---GAGCATATATGTTG.........................1917.007.00
.........................................................................................AGTAT---GAGCATATATGTTGG........................2015.005.00
.........................................................................................AGTAT---GAGGATATATGTTG.........................1911.001.00
...ATACAGATACATATA-TACGTC...............................................................................................................2111.001.00
32 scaffold_15110:24267713-24267837 + 48.76
TTT----------ATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTC-----AAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATC-AAAGACATCTTTCTT
TTTGATTTTGTATATACATGTTGTTCTGTACCACATTA----CACCAAACGGTTAATATGAGGTTATCAG-GTTATCAGGTTATGTCAG--------CGAAAACT-CACCATTCTTTACGAGCTAAAATCATTTATCTT
SizeHit CountTotal NormV109
Male body
.......................................................ATATGAAGTTxTCAG-GTTAT...............................................................1911.001.00
16 scaffold_15074:5679728-5679839 + 48.29
TTTATACATTTGTTTATAAT------GCACA--------------T--------------AATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTAAATGTAAATTTAAAAAAACAATACACACCCTGGAATGTATATACTATTTAGCCATAAATAAATGCC---TTGTCTTTATAAAATCA----------------------TACCATACAGCTTTAA--------------------ATTTTGCTT
SizeHit CountTotal NormV109
Male body
31 scaffold_15110:23986939-23987057 + 47.27
TTTATACATTTGTTTATA-ATGCACATA-ATAAATGCCA-----ACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTG------CAATCAAAGACATCTTTCTT
TTTATGTATATATATATATATATATATATATATACGCAAACGTAACGGGGTAACGGGGGA---------------CTGCAGAATTCACACAAAGACA-TATTGGCGCTTGCGTCGATTATC-ATGACATCTCTTTC
SizeHit CountTotal NormV109
Male body
.........................................GCAACxGGGTAACGGGGGA---------------.............................................................18110.0010.00
.........................................GTAACxGGGTAACGGGGAA---------------.............................................................1819.009.00
96 scaffold_15126:8336185-8336295 - 41.32
TTTATACATTTGTTTATA-ATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACAT-------CTTTCTT
CATACATACATGTATATACGTACACACAA-----------------TCGTAACATGGTAAAGGGGGT-ACACC-GAATACATACAAAGACA-TATTGACGCTCGCGTCGAATAACATGTCATCTCTTTCTC
SizeHit CountTotal NormV109
Male body
82 scaffold_15074:5554077-5554222 - 39.47
TTTATACATTTGTT-----------------------------TATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
ATGATTCAGCCAGGCTAAAAATCAAGTTCATGCGTGCGGAGGCCAGGTTTCACGCAAGTCAGCTCAA----TATTAACATAGGTTTAAGTATTTACATGCCTGCACCTAT-GTATGTAGCTAGTTTTATACGCTTTTAATGA-GCCGCGTTT
SizeHit CountTotal NormV109
Male body
41 scaffold_15126:8012560-8012660 + 39.36
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCA------ATCAAAGACATCTTTCTT
TATATATATTCGTATATAC--------GTAAACG----------------CAATCGTAACGTGGGT--CTGCAGAATACGCACAAAGACAT-ATTGACGCTCGCGTCGATTATC-ATGGCATCTCTTTC
SizeHit CountTotal NormV109
Male body
17 scaffold_15074:5680154-5680235 + 38.5
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTA---TAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
CTTAAATAT-----TATGCCATATTTAATGTATGTCATTCATATTTTGTGATATGATTTAAAAAAAAATCATCTCAAA-TTCAGAGTA--------------------------------------
SizeHit CountTotal NormV109
Male body
99 scaffold_15203:11719609-11719709 - 37.32
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
GTTATGTACCCTTTTGTAAATCAATTAATT------------------TGCAATC----TTATTTACATTTATAGACACTAGGAACTGGTTTTCTTTTTGGCGTTATTGACTGTAACTATTTT
SizeHit CountTotal NormV109
Male body
26 scaffold_15110:17876155-17876236 + 36.67
TTTATACAT-------------TTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT----------
TTTATAAATATTTTAATGTATTTCACTTATAATTTACATAATAGGCACG----------------------------------------------------------------TTTTCATTGAATACATTCTATTTTAAATAAGAT
SizeHit CountTotal NormV109
Male body
10 scaffold_14906:10290980-10291073 + 36.63
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
ATTATGCTCGCATTTGAAATGCGTATAAGAAA----------ACTCTATGAGGATATTAGTAACTTCTTC-------------------TTTTTTTCTTTTTAAAATTAGTGCCATTTTTATT
SizeHit CountTotal NormV109
Male body
29 scaffold_15110:18774551-18774639 + 35.28
TTTATACATTTGTTT------ATAATGCA-CATAATAAATGCCAACCATTC-----ATCATGAAATTATAAATAGTATCATTTCAAG-ATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TATATACATATGTTTCATATTATATTTCATCATATTTATTGCCATAGTCTTTGCGAGTAATTAATTTATAAATAGAAGTACTTTTTGGA-----------------------------------------------
SizeHit CountTotal NormV109
Male body
61 scaffold_8789:4071-4158 - 34.29
TTTATACATTTGTTT------ATAATGCA-CATAATAAATGCCAACCATTCAT-------CATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TATATACATATGTTTCATATTATATTTCATCATATTTATTGCCAT--AGTCTTTGCGAGTAATTAATTTATAAATAGAAGTACTTT-----------------------------------------------TTGG
SizeHit CountTotal NormV109
Male body
48 scaffold_15245:11361729-11361810 + 33.06
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAA----GGCTTTATTTTGTTTTGCAATCAAA--------------------GACATCTTTCTT
TTATT-----------------------------------------------------------------CTAAAATTATTGGCAAATTTGCCTATATTAAGTTTTGCACCCAAATGTGAGCAGGCCTGCAAGTGAACTCATTTCTT
SizeHit CountTotal NormV109
Male body
37 scaffold_15126:5821552-5821615 + 33.06
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
------------------------------------AACCATTCCAAGTGCAATTAAAAAATGTATCATTTTATAGCACTAAATAATGTATTTTTTAGCT-----------------------
SizeHit CountTotal NormV109
Male body
66 scaffold_14822:929791-929858 - 32.66
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
CTTATATATTTATTTTCTTTAT--TTATTTAATGGCGACTA----ATATAAAACTTAAATTAATAAAACTTTAA-------------------------------------------------
SizeHit CountTotal NormV109
Male body
86 scaffold_15110:7150682-7150738 - 28.11
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTGTGCAAATAT---TAATGTAGATAAGAAATTTGA--TAGTCTATATAAAACTATAGTTA-------------------------------------------------------------
SizeHit CountTotal NormV109
Male body
20 scaffold_15110:7150440-7150496 + 26.5
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTC--AAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTA--------------------------------------------TGACATTTTGAATAATGTGATTCGCTAAGTTTCATAATGGAGTTAAATATTGT------------------------
SizeHit CountTotal NormV109
Male body
51 scaffold_15245:13574314-13574355 + 22.31
TTTATACATTTGTTTATAATGCACATAATAAATGCCAACCATTCATCATGAAATTATAAATAGTATCATTTCAAGATGCATGGTAAGGCTTTATTTTGTTTTGCAATCAAAGACATCTTTCTT
TTTATACACATTTTTGTGCTTCAAATTTCGTATAAAAGCAAA---------------------------------------------------------------------------------
SizeHit CountTotal NormV109
Male body


Generated: 04/20/2012 at 05:47:30 EDT