Possible Orthologs for dme-mir-4949

droSim1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
3	chr3R:26688146-26688275 -	96.95	TGCGAAACGTGTTTGATAATGCGCCGCCATCTTGCGGCACACTCGCACACACACACGTGTGCCATTCTGGTTTTGCAGTGGTGTGCGTGTGTGCCTCGAGTCGTTGCGTCACTGGAAAAGTTAGAAAATC TGCGAAACGTGTTTGATAATGCGCCGCCATCTTGCGGCACACTCGCACACACACACGTGTGCCAGGCTGGTTTTGCAGTGGTGTGCGTGTGTGCCTCGAGTCGTTGCGTCACTGGAAAAGTTAGAAAATC Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo ............................................................................AGTGGTGTGCGTGTGTGCCTCG................................ 22 1 8.00 8.00 0.00 0.00 0.00 ..........................................................................................GTACCTxGAGTCGTTGCGTC.................... 19 1 3.00 0.00 0.00 3.00 0.00 ...........................................................................................TGCCTCGAGTCGTTGCGTCAC.................. 21 1 3.00 0.00 2.00 0.00 1.00 ..........................................................................................GTACCTxGAGTCGTTGCGTCA................... 20 1 2.00 0.00 0.00 2.00 0.00 ..................................CGGCACACTCGCACACACACAC.......................................................................... 22 1 2.00 0.00 2.00 0.00 0.00 .......................................................CGTGAGACAGGCTGGTTT......................................................... 18 1 2.00 2.00 0.00 0.00 0.00 ..................................................ACACACGTGTGCCAGGCTG............................................................. 19 1 2.00 0.00 0.00 0.00 2.00 ............................................................................AGTGGTGTGCGTGTGTGCCT.................................. 20 1 1.00 1.00 0.00 0.00 0.00 ...................................................................................TGCGTGTGTGCCTCGAGTCGT.......................... 21 1 1.00 1.00 0.00 0.00 0.00 ..........................................................................................GTGCCTCGAGTCGTTGCGTCACT................. 23 1 1.00 0.00 0.00 0.00 1.00 .............................................................................................................CACTGGAAAAGTTAGAAAATC 21 1 1.00 0.00 1.00 0.00 0.00 ...........................................................................CAGTGGTGTGCGTGTGTGCC................................... 20 1 1.00 0.00 1.00 0.00 0.00 ...........................................................................CAGTGGTGTGCGTGTGTGCCTCG................................ 23 1 1.00 1.00 0.00 0.00 0.00 ..................................CGGCACACTCGCACACACACACGTGTGCC................................................................... 29 1 1.00 0.00 1.00 0.00 0.00 ..........................................................................................GTGCCTCGAGTCGTTGCGTCACTGGAAA............ 28 1 1.00 0.00 0.00 0.00 1.00 ..............................................................CAGGCTGGTTTTGCAGTGGTGTGC............................................ 24 1 1.00 1.00 0.00 0.00 0.00 ....................................................................................GCGTGTGTGTCTCGTGTC............................ 18 1 1.00 0.00 0.00 0.00 1.00 ............................................................................AGTxGTGTGTGTGTGTGCCT.................................. 19 1 1.00 1.00 0.00 0.00 0.00 ........................................................................TTGCAGTGGTATGTGTGT........................................ 18 1 1.00 1.00 0.00 0.00 0.00

droSec1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	super_4:5862973-5863106 -	89.11	TGCGAAACGTGTTTGATAATGCGCCGCCATCTTGCGGCACACTCGCACAC----ACACACGTGTGCCATTCTGGTTTTGCAGTGGTGTGCGTGTGTGCCTCGAGTCGTTGCGTCACTGGAAAAGTTAGAAAATC TGCGAAACGTGTTTGATAATGCGCCGCCATCTTGCGGCACACTCGCACACACACACACACGTGTGCCAGGCTGGTTTTGCAGTGGTTTGCGTGTGTGCCTCAAGTCGTTGCGTCACTGAAAAAGTTAGAAAATC Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head ................................................................................AGTGGTTTGCGTGTGTGCCTCA................................ 22 1 2.00 0.00 1.00 1.00 ...............................................................................CAGTGGTTTGCGTGTGTGCCT.................................. 21 1 2.00 2.00 0.00 0.00 ..........................................................................................GTGTGTGCCTCAAGTCGTTGC....................... 21 1 1.00 0.00 1.00 0.00 .....................................CACACACACACACACACACA............................................................................. 20 17 0.06 0.00 0.00 0.06 .....................................................................................TTTGCGTGTGTGCCTCAAGTCGC.......................... 23 1 1.00 0.00 1.00 0.00 .....................................................................................TTTGCGTGTGTGCCTCAAGTC............................ 21 1 1.00 0.00 0.00 1.00 ......................................................................................................AGTCGTTGCGTCACTGAA.............. 18 1 1.00 0.00 1.00 0.00 .......................................................................................TGCGTGTGTGCCTCAAGTCG........................... 20 1 1.00 0.00 1.00 0.00 ......................................ACACACACACACACACACA............................................................................. 19 19 0.05 0.00 0.00 0.05 .................................................................................GTGGTTTGCGTGTGTGCCTCA................................ 21 1 1.00 0.00 0.00 1.00 ............................................................................................GTGTGCCTCCAGTCGTTG........................ 18 1 1.00 0.00 1.00 0.00 .......................................CACACACACACACACACACA........................................................................... 20 17 0.06 0.00 0.00 0.06 ...........................................................................................TGTGTGCCTCAAGTCGTTGAGTC.................... 23 1 1.00 1.00 0.00 0.00 .........................................................................GTTTTGCAGTGGTTTGCGT.......................................... 19 1 1.00 0.00 1.00 0.00 .............................................CACACACACACACACGAGTGC.................................................................... 21 2 0.50 0.00 0.50 0.00 ........................................................................GGTTTTGCAGTGGTTTGC............................................ 18 1 1.00 0.00 1.00 0.00 .......................................................................................TGCGTGTGTGCCTCAAGTCGT.......................... 21 1 1.00 0.00 0.00 1.00 .............................................................................TGCAGxGGTGTGCGTGTGT...................................... 18 1 1.00 0.00 0.00 1.00 .....................................CACACACACACACACACACAC............................................................................ 21 14 0.07 0.00 0.00 0.07 ........................................ACACACACACACACACACA........................................................................... 19 19 0.05 0.00 0.00 0.05 .............................................................TGTGCCAGGCTGGTTTTGCAGTGGT................................................ 25 1 1.00 0.00 0.00 1.00 ...........................................................................................TGTGTGCCTCAAGTCGTTGCGT..................... 22 1 1.00 0.00 0.00 1.00 .....................................................................................TTTGCGTGTGTGCCTTAAGTCC........................... 22 1 1.00 0.00 1.00 0.00 .................................................................................GTGGTTTGCGTGTGTGCCTCAAGT............................. 24 1 1.00 0.00 1.00 0.00 ........................................................................GGTTTTGCAGTGGTTTGCGTGT........................................ 22 1 1.00 0.00 1.00 0.00 .....AACGTGTTTGATAATGCGC.............................................................................................................. 19 1 1.00 0.00 1.00 0.00 .......................................................CACACGTCTGCCAGGCTG............................................................. 18 1 1.00 0.00 1.00 0.00 .......................................CACACACACACACACACACAC.......................................................................... 21 14 0.07 0.00 0.00 0.07 .....................................CACACACACACACACACACACAC.......................................................................... 23 9 0.11 0.11 0.00 0.00 ..................................CGGCACACTCGCACACACACACAC............................................................................ 24 1 1.00 0.00 1.00 0.00 ....................................................................................................CAAGTCGTTGCGTCACTGAA.............. 20 1 1.00 0.00 0.00 1.00

droYak2 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	chr3R:27981306-27981430 -	89.39	TGCGAAACGTGTTTGATAATGCGCCGCCATCTTGCGGCACACTCGCACACACACACGTGTGCCATTCTGGTTTTGCAGTGGTGTGCGTGTGTGCCTCGAGTCGTTGCGTCACTGGAAAAGTTAGAAAATC TGCGAAACGTGTTTGAAAATCCGTCGCCATCTTGCGGCACACTC--ACACACACACGTGTGCCAATATGGT-TTGCAGTGGTGTGCGT--GTGCCTCGAGTCGTTGCGTCACTGGAAAAGTCAGAAAATC Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head ...........................................................................CAGTGGTGTGCGT--GTGCCTCGAG.............................. 23 1 7.00 2.00 1.00 3.00 1.00 0.00 ................................TGCGGCACACTC--ACACACACAC.......................................................................... 22 1 4.00 0.00 0.00 0.00 0.00 4.00 ................................TGCGGCACACTC--ACACACACACGTGT...................................................................... 26 1 2.00 0.00 0.00 0.00 0.00 2.00 ..................................................................................GTGCGT--GTGCCTCGAGTCGTTGCGTCACT................. 29 1 1.00 0.00 0.00 1.00 0.00 0.00 ..............................................................CAATATGGT-TTGCAGTGGT................................................ 19 1 1.00 0.00 0.00 1.00 0.00 0.00 ...........................................................................CAGTGGTGTGCGT--GTGCCTCGA............................... 22 1 1.00 0.00 0.00 1.00 0.00 0.00 .....................................CACACAC--ACACACACACATGT...................................................................... 21 2 0.50 0.00 0.00 0.50 0.00 0.00 .............................................................CCAATATGGT-TTGCAGTGGTGTGCGT--........................................ 26 1 1.00 0.00 0.00 1.00 0.00 0.00 ...........................................................................CAGGGGTGTGCGT--GTGCCTCGAG.............................. 23 1 1.00 0.00 0.00 1.00 0.00 0.00 ............................................................................AGTGGTGTGCGT--GTGCCTCGAG.............................. 22 1 1.00 0.00 0.00 0.00 1.00 0.00 .....................................CACACTC--ACACACAGACGCGTGC.................................................................... 23 1 1.00 0.00 0.00 1.00 0.00 0.00 ........................................................................TTGCAGTGGTGTGCGT--GTGCCT.................................. 22 1 1.00 0.00 1.00 0.00 0.00 0.00 ..................................................................................GTGCGT--GTGCCTCGAGTCGTTGCGTC.................... 26 1 1.00 0.00 0.00 1.00 0.00 0.00 ................................TGCGGCACACTC--ACACACACACG......................................................................... 23 1 1.00 1.00 0.00 0.00 0.00 0.00 ...........................................................................CAGTGGTGTGCGT--GTGCCT.................................. 19 1 1.00 0.00 0.00 1.00 0.00 0.00 .......................................CACTC--ACACACAGACGCGTGC.................................................................... 21 1 1.00 0.00 1.00 0.00 0.00 0.00

droEre2 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
3	scaffold_4820:935924-936048 +	87.89	TGCGAAACGTGTTTGATAATGCGCCGCCATCTTGCGGCACACTCGCACACACACACGTGTGCCATTCTGGTTTTGCAGTGGTGTGCGTGTGTGCCTCGAGTCGTTGCGTCACTGGAAAAGTTAGAAAATC TGCAAAACGTGTTGGAAAATTCGCCGCCATCTTGCGGCACA----CACACACACACGTGTGCCAGTCTGGT-TTGCAGTGGTGTGCGTGTGGGCCTCGAGTCGTTGCGTCACTGGAAAAGTCCGAAAATC Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head ............................................................................AGTGGTGTGCGTGTGGGCCTCG................................ 22 1 4.00 0.00 0.00 0.00 4.00 ............................................................................AGTGGTGTGCGTGTGGGCCT.................................. 20 1 4.00 0.00 0.00 0.00 4.00 ............................................................................AGTGGTGTGCGTGTGGGCCTC................................. 21 1 2.00 0.00 0.00 0.00 2.00 ...........................................................................CAGTGGTGTGCGTGTGGGCCT.................................. 21 1 1.00 0.00 0.00 0.00 1.00 ...................................................................................TGCGTGTGGGCCTCGAGTC............................ 19 1 1.00 1.00 0.00 0.00 0.00 ..........................................................................GCAGTGGTGTGCGTGTGGGCCTCG................................ 24 1 1.00 0.00 0.00 0.00 1.00 ........................................................................................GTGGGCCTCGAGTCGTTGC....................... 19 1 1.00 0.00 0.00 0.00 1.00 ...................................................................................CGCGTGTGGGCCTCGAGTCGTTT........................ 23 1 1.00 0.00 0.00 0.00 1.00 .............................................................CCAGTCTGGT-TTGCAGTGGTGTGC............................................ 24 1 1.00 0.00 0.00 0.00 1.00 .......................................................................................TGTGGGCCTCGAGTCGTTGCGTCAC.................. 25 1 1.00 0.00 0.00 0.00 1.00 ............................................................................AGTGGTGTGCGTGTGGGCC................................... 19 1 1.00 0.00 0.00 0.00 1.00

droFic1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000453782:260753-260875 +	79.09	TGCGAAACGTGTTTGATAATGCGCCGCCATCTTGCGGCACACTCGCACACACACACGTGTGCCATTCTGGTTTTGCAGTGGTGTGCGTGTGTGCCTCGAGTCGTTGCGTCACTGGAAAAGTTAGAAAATC TGCGAAACGTGTTTGATTATTTGTCGCCATCTTGCGGCACACTG----ACACACACATGTGCCTTTCAGGTT-TGCCCTGGTGTGCGTGTGT--CTCAAATCGTTGCGTCACTGGAAAAGTCTGAAAAAA Size Hit Count Total Norm

droEug1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000407010:15842-15967 -	73.65	TGCGAAACGTGTTTGAT----AATGCGCCGCCATCTTGCGGCACACTCGCACACACACACGTGTGCCATTCTGGTTTTGCAGTGGTGTGCGTGTGTGCCTCGAGTCGTTGCGTCACTGGAAAAGTTA-GAAAATC TGCCAAACGTGATTAATTTCTAATTTGTCGCCATCTTGCGGCACA------CACACACGCATGTGCCTACCAGGTTTT-CAGTGGTGTGCGTATGT--CGCTGGTCGTTGCGTCACTGAAAAAGTCGGGAAAAAC Size Hit Count Total Norm

droBia1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000302113:268003-268130 +	87.12	TGCGAAACGTGTTTGATAATGCGCCGCCATCTTGCGGCACACTCGCACACACACA--CGTGTGCCATTCTGGTTTTGCAGTGGTGTGCGTGTGTGCCTCGAGTCGTTGCGTCACTGGAAAAGTTAGAAAATC TGCGAAACGTGTTTGATAATCCGCCGCCATCTTGCGGCACACTCACACACACACGGGCATGTGCCAGCCAGGT--TGCGGTGGTGTGCGTGTGTCC--CGAGTCGTTGCGTCACTGGAAAAGTGGGAAAATC Size Hit Count Total Norm

droTak1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000415286:165319-165444 -	83.52	TGCGAAACGTGTTTGATAATGCGCCGCCATCTTGCGGCACACTCGCACACACACA--CGTGTGCCATTCTGGTTTTGCAGTGGTGTGCGTGTGTGCCTCGAGTCGTTGCGTCACTGGAAAAGTTAGAAAATC TGCGAAACGTGTTTGATAATCCGTCGCCATCTTGCGGCACACTCACACACACGCGGGCATGTGCCC------GTTTGCAGTGGTGTGCGTGTGTGTCTCGAGTCGTTGCGTCACTGGAAAAGTCGGAAAAAC Size Hit Count Total Norm

droEle1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000491194:1053105-1053231 -	84.72	TGCGAAACGTGTTTGATAATGCGCCGCCATCTTGCGGCACACTCGCACACACACACGTGTGCCATTCTGGTTTTGCAGTGGTGTGCGTGTGTGCCTCGAGTCGTTGCGTCACTGGAAAAGTTAGAAAATC TGCGAAACGTGTTTGATAGTTCGTCGCCATCTTGCGGCACACTTCCACACACACACATGTGCTATTCAGGTTCT-CAAAAGTGTGCGTGTGTG--TAGAGTCGTTGCGTCACTGGAAAAGTCGGAAAAAC Size Hit Count Total Norm

droRho1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
3	scf7180000777206:283291-283415 +	86.39	TGCGAAACGTGTTTGATAATGCGCCGCCATCTTGCGGCACACTCGCACACACACACGTGTGCCATTCTGGTTTTGCAGTGGTGTGCGTGTGTGCCTCGAGTCGTTGCGTCACTGGAAAAGTTAGAAAATC TGCGAAACGTGTTTGATAATCCGTCGCCATCTTGCGGCACACTC--ACACACACACATGTGCCAGTCAGGTTTT-CAGTACTGTGCGTGTGT--CTCGAGTCGTTGCGTCACTGGAAAAGTCGGAAAAAC Size Hit Count Total Norm

droKik1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000301923:160273-160394 -	61.47	TGCGA------------AACGTGTTTGATAATGCGCCGCCATCTTGCGGCACACTCGCACACACACACGTGTGCCA--TTCTGGTTTTGCAGTGGTGTGCGTGTGTGCCTCGAGTCGTTGCGTCACTGGAAAAGTTAGAAAATC TGCGAAAAGATGAACGAAACGTGCTAAAT----TGTCGCCATCTTGCGGCACA------CACACACACATGTGACAGATTCA------------GAGTGTGCGTGTGTCTCGAGTCGTTGCGTCACTGAAAAAGTCGGAAAACT Size Hit Count Total Norm

droAna3 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
2	scaffold_13340:14436299-14436405 -	52.96	TGCGAAACGTGTTTGATAATGCGCCGCCATCTTGCGGCACACTCGCACACACACACGTGTGCCATTCTGGTTTTGCAGTGGTGTGCGTGTGTGCCTC-GAGTCGTTGCGTCACTGGAAAAGTTAGAAAATC CTCAAAACGTGTTCAATG--GAATCGCCATCTTGCGGCT------CACACACACATGTG---------------ACAGTTGTTCGTGCGTGTGTCTGGGAGTCGTTGCGTCACTGAGAAAGTCGGAAAAT- Size Hit Count Total Norm V105 Male body V106 Head V055 Unknown V039 Embryo .................................................................................................................TGAGAGTGTCGGAAAAT- 17 1 1.00 0.00 0.00 1.00 0.00 ....................................................................................GTGCGTGTGTGTGTGAGT............................. 18 9 0.11 0.11 0.00 0.00 0.00 ...........................................................................CAGTTGTTCGTGCGTGTGTCTGGGA............................... 25 1 1.00 1.00 0.00 0.00 0.00

droBip1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000395971:733981-734084 +	51.87	TGCGAAACGTGTTTGATAATGCGCCGCCATCTTGCGGCACACTCGCACACACACACGTGTGCCATTCTGGTTTTGCAGTGGTGTGCGTGTGTGCCTCGAGTCGTTGCGTCACTGGAAAAGTTAGAAAATC T-CAAAACGTGTTCAATGAATTGTCGCCATCTTGCGGCTC--------ACACACACATGTGA----------------CAGTTCGTGCGTGTGTCTGGAGTCGTTGCGTCACTGAGAAAGTCGGAAAAT- Size Hit Count Total Norm

dp4 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	chr2:85298-85449 +	51.9	TGCG---------AAACGTGTTTGATAATGCGCCGCCATCTTGCGGCACACTCGC----ACACACACACGTGTG-------------CCATTCTGGTTTTGCAGTGGTGTGCGTGTGTGCCTCGAGTCGTTGCGTCACTGGAAAAGTT---------AGAAAATC TACATTTTCTCGAAAACGTGTCGAAT-----GTCGCCATCTTGCGGCACACACACAGACACACACACACATGTGACGAGAGGAATTGCCAG-----TGCT-CAATAGTGTGCCTGTGTG--TCGAGACGTTGCGTCACTGAAAAAGTCGAACAGCAAAGTAAATT Size Hit Count Total Norm V112 Male body V043 Embryo V051 Head M022 Male body .................................................ACACACAGACATACAGACACATG............................................................................................. 23 1 1.00 0.00 1.00 0.00 0.00 .................................................................ACACATGTGxCGAGAAGAA................................................................................. 18 1 1.00 0.00 1.00 0.00 0.00 .....................................................................ATGTGACGAGAGGAATTGC............................................................................. 19 1 1.00 1.00 0.00 0.00 0.00 ....................................................................CATGTGACGAGAGGAATTGCCA........................................................................... 22 1 1.00 0.00 0.00 1.00 0.00 ............................................................................................................GTGCCTGTGTG--TCGAGACGTTGC................................ 23 1 1.00 0.00 0.00 1.00 0.00 ...................................................ACACAGAGAGACACACAC................................................................................................ 18 6 0.17 0.00 0.17 0.00 0.00 .................................................ACACAGAGAGACACACAC.................................................................................................. 18 6 0.17 0.00 0.17 0.00 0.00 .................................................................................................................TGTGTG--TCGAGACGTTGCGTCAC........................... 23 1 1.00 1.00 0.00 0.00 0.00 ............................................................................................................GTGCCTGTGTG--TCGAGACGTTGCGTC............................. 26 1 1.00 1.00 0.00 0.00 0.00 ..................................................................CACATGTGACGAGAGGAATTG.............................................................................. 21 1 1.00 1.00 0.00 0.00 0.00 .........................................................................................................AGTGTGCCTGTGTG--TCGAGACG.................................... 22 1 1.00 0.00 0.00 1.00 0.00 .......................................................................GTGACGAGAGGAGTTGCCA........................................................................... 19 1 1.00 1.00 0.00 0.00 0.00 .......................................................................................................ATAGTGTGCCTGTGTG--TCGAGACG.................................... 24 1 1.00 0.00 0.00 1.00 0.00 ...........................................................................................................TGTGCCTGTGTG--TCGAGACGTTGC................................ 24 1 1.00 1.00 0.00 0.00 0.00 ..............................................................................................................GCCTGTGTG--TCGAGACGTTGCGTCACT.......................... 27 1 1.00 1.00 0.00 0.00 0.00 ..................................................CACACGGACACACACACACA............................................................................................... 20 34 0.03 0.00 0.00 0.03 0.00 ...............................................ACACACACAGATACACACACA................................................................................................. 21 32 0.03 0.00 0.03 0.00 0.00 ............................................................................................................GTGCCTGTGTG--TCGAGACGTT.................................. 21 1 1.00 0.00 0.00 1.00 0.00 ..................................................................................................CT-CAATAGTGTGCCTGTGTA--A........................................... 21 1 1.00 0.00 1.00 0.00 0.00 .......................................................................................................ATAGTGTGCCTGTGTG--TCGAGAC..................................... 23 1 1.00 0.00 0.00 1.00 0.00 ..........CGAAAACGTGTCGAAT-----GTCGCCAC.............................................................................................................................. 24 1 1.00 0.00 0.00 1.00 0.00 ...............................................ACACAGAGAGACACACAC.................................................................................................... 18 6 0.17 0.00 0.17 0.00 0.00

droPer1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	super_7:2877006-2877157 +	51.9	TGCG---------AAACGTGTTTGATAATGCGCCGCCATCTTGCGGCACACTCGC----ACACACACACGTGTG-------------CCATTCTGGTTTTGCAGTGGTGTGCGTGTGTGCCTCGAGTCGTTGCGTCACTGGAAAAGTT---------AGAAAATC TACATTTTCTCGAAAACGTGTCGAAT-----GTCGCCATCTTGCGGCACACACACAGACACACACACACATGTGACGAGAGGAATTGCCAG-----TGCT-CAATAGTGTGCCTGTGTG--TCGAGACGTTGCGTCACTGAAAAAGTCGAACAGCAAAGTAAATT Size Hit Count Total Norm V111 Male body V042 Embryo V050 Head V057 Head M021 Embryo ......................................................................................................................G--TCGAGACGTTGCGTCACTGA........................ 21 1 4.00 0.00 0.00 0.00 0.00 4.00 ...............................................................................................................................CGTTGCGTCACTGAAAAAGTCGAAC............. 25 1 4.00 0.00 0.00 0.00 0.00 4.00 ..............................................GACACACACAGAGACACACACA................................................................................................. 22 2 1.50 1.50 0.00 0.00 0.00 0.00 ............................................GACACACACAGAGACACACACA................................................................................................... 22 2 1.50 1.50 0.00 0.00 0.00 0.00 .........................................................................................................AGTGTGCCTGTGTG--TCGAGACGTTGC................................ 26 1 3.00 0.00 0.00 0.00 0.00 3.00 .......................................................................................................................................CACTGAAAAAGTCGAACAG........... 19 1 3.00 0.00 0.00 0.00 0.00 3.00 ............................................................................................................GTGCCTGTGTG--TCGAGACGTTGCGTCACT.......................... 29 1 3.00 0.00 0.00 0.00 0.00 3.00 ...................................................ACACGGACACACACACACAC.............................................................................................. 20 35 0.06 0.00 0.00 0.00 0.00 0.06 ....................................................AACAGACACACACACACT............................................................................................... 18 6 0.33 0.00 0.00 0.00 0.00 0.33 .......................................................................................................................................CACTGAAAAAGTCGAACAGC.......... 20 1 2.00 0.00 0.00 0.00 0.00 2.00 ..................................................CACACGGACACACACACA................................................................................................. 18 52 0.04 0.00 0.00 0.00 0.00 0.04 ......................................................................................................................G--TCGAGACGTTGCGTCACT.......................... 19 1 2.00 0.00 0.00 0.00 0.00 2.00 .....................................................................................................CAATAGTGTGCCTGTGTG--TCGA........................................ 22 1 1.00 0.00 1.00 0.00 0.00 0.00 .................................................................ACACATGTGxCGAGAAGAA................................................................................. 18 1 1.00 0.00 0.00 0.00 1.00 0.00 ................................................CACACACAAACACACACACA................................................................................................. 20 31 0.03 0.00 0.03 0.00 0.00 0.00 ..................................................................................................CT-CAATAGTGTGCCTGTGT............................................... 19 1 1.00 0.00 1.00 0.00 0.00 0.00 ...............................................................................................................................CGTTGCGTCACTGAAAAAGTCGAACAGC.......... 28 1 1.00 0.00 0.00 0.00 0.00 1.00 ......................................................................................................................G--TCGAGACGTTGCGTCACTGAAAAAGTCG................ 29 1 1.00 0.00 0.00 0.00 0.00 1.00 ...................................................ACACACACAAACACACACAT.............................................................................................. 20 47 0.02 0.00 0.02 0.00 0.00 0.00 .................................................ACACACAGACAGACATACACA............................................................................................... 21 1 1.00 0.00 1.00 0.00 0.00 0.00 ......................................................................................................................G--TCGAGACGTTGCGTCACC.......................... 19 1 1.00 0.00 0.00 0.00 0.00 1.00 ..................................................................................................................GTGTG--TCGAGACGTTGCGT.............................. 19 1 1.00 1.00 0.00 0.00 0.00 0.00 ...............................................................................................................................CGTTGCGTCACTGAAAAA.................... 18 1 1.00 0.00 0.00 0.00 0.00 1.00 ...............................................ACACACACAAACACACACAT.................................................................................................. 20 47 0.02 0.00 0.02 0.00 0.00 0.00 .......................................CTTGGGGCACACACACAGC........................................................................................................... 19 1 1.00 0.00 0.00 0.00 1.00 0.00 .............................................GCACACACACACACACGCACA................................................................................................... 21 40 0.03 0.00 0.03 0.00 0.00 0.00 ..................................................................................................................................TGCGTCACTGAAAAAGTCGAACAGC.......... 25 1 1.00 0.00 0.00 0.00 0.00 1.00 ........................................................................................................TAGTGTGCCTGTGTG--TCGAGAC..................................... 22 1 1.00 0.00 1.00 0.00 0.00 0.00 ................................................................................................................................GTTGCGTCACTGAAAAAGTCGACC............. 24 1 1.00 0.00 0.00 0.00 0.00 1.00 ...............................................ACAGACACAGACACAGAC.................................................................................................... 18 5 0.20 0.00 0.00 0.00 0.00 0.20 .............................................................................................................................GACGTTGCGTCACTGAAAAAGTCGAACA............ 28 1 1.00 0.00 0.00 0.00 0.00 1.00 ....................................................CACACACACACACACACATG............................................................................................. 20 9 0.11 0.00 0.11 0.00 0.00 0.00 ..............AACGTGTCGAAT-----GTCGCC................................................................................................................................ 18 1 1.00 0.00 1.00 0.00 0.00 0.00 .................................................ACACACGGACAGACACAC.................................................................................................. 18 3 0.33 0.00 0.00 0.00 0.00 0.33 .......................................................................................................................................CACTGAAAAAGTCGAACAGCAAA....... 23 1 1.00 1.00 0.00 0.00 0.00 0.00 ................................................................................................................................GTTGCGTCACTGAAAAAGTCGAAC............. 24 1 1.00 0.00 0.00 0.00 0.00 1.00

droWil1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scaffold_181108:712012-712143 -	59.41	TGCGAAACGTGTTTGATA------ATGCGCCGCCATCTTGCGGCACACTCGCACACACACACGTGTGCCAT------TCTGGTTTTGCAGTGGTGTGCGTGTGTGCCTCGAGTCGTTGCGTCACTGGAAAAGTTAGAAAATC TGAAAAATGTATTTTATCTAGAGATATTGTCGCCATTTTGCGGCACT------CACACACACGTGTCACAAGAGAACTGTCAAATTGTAGCTGTATGCGTGAGA----CCAGTCGTTGCGTCACAGCAAAAGTTTTCAAATT Size Hit Count Total Norm V117 Male body V118 Embryo V119 Head M020 Head .............................................................................................................................................A 21 2 1.50 1.00 0.50 0.00 0.00 .....CATGTATTTTATCTAGAGATATT.................................................................................................................. 23 1 1.00 0.00 1.00 0.00 0.00 ....................GAGATATTGTCGCCATTTTGCGGCA................................................................................................. 25 1 1.00 0.00 1.00 0.00 0.00 .............TTATCTAGAGATATTGTCGC............................................................................................................. 20 1 1.00 0.00 1.00 0.00 0.00 .............................................................................TGTCGAATTGTGGCTGTATGC............................................ 21 1 1.00 0.00 0.00 1.00 0.00 ............................................................ACGTGTCACAAGAGAACT................................................................ 18 1 1.00 0.00 1.00 0.00 0.00 ...............................................................................................TGCGTGAGA----CCAGTCGTTGCG...................... 21 1 1.00 0.00 1.00 0.00 0.00 ................TCTAGAGATATTGTCGCC............................................................................................................ 18 1 1.00 0.00 0.00 0.00 1.00 ....................................................................CAAGAGAACTxTGAAATTG....................................................... 18 1 1.00 0.00 1.00 0.00 0.00

droVir3 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scaffold_12855:1227223-1227391 +	39.35	TG--------CGAAACGTGTTTGATAATGCGCCGCCATCTTGCGGCACACTCGCACACA--------------CACACG-------------------------------TGTGCCATTCTGGTTTTGCAGTGGTGTGCGTGTGTGCCTCGAGTCGTTGCGTCACTGGAAAAGTT----------AGAAAATC TAATATTTTTTCAAACGTGTTCA-----GTGTCGCCATCTTGCGGCACATACACACACATTCAGACAAGATGTCACACGGACGTACGAAGAGAACTGTCAGTGTGTTTTGTG--------------TGCCGTAGTGTGG-AGT----GTAAATTTGTTGCGTCACTAGAAAAGTTCAACTGTTGAAGGAAATC Size Hit Count Total Norm V116 Male body V053 Unknown V047 Embryo M027 Male body M028 Head .....................................................................................................................................................AAATTTGTTGCGTCACTAGA........................ 20 1 2.00 1.00 0.00 1.00 0.00 0.00 .........................................................................................................TTTTGTG--------------TGCCTTAGTGTGG-A.................................................... 21 1 1.00 0.00 0.00 1.00 0.00 0.00 ..........................................................................ACACGGACGTACGAAGAGAA................................................................................................... 20 1 1.00 0.00 0.00 0.00 0.00 1.00 ............................................................................ACGGACGTACGAAGAGAACT................................................................................................. 20 1 1.00 0.00 0.00 0.00 1.00 0.00 .........................................................................CACACGGACGTACGAAGAGA.................................................................................................... 20 1 1.00 0.00 0.00 1.00 0.00 0.00 .........................................................................CACACGGACGTACGAAGAGAACTGTCAG............................................................................................ 28 1 1.00 0.00 0.00 0.00 1.00 0.00 ........................................................................................................GTTTTGTG--------------TGCCGTAGTGTGG-A.................................................... 22 1 1.00 0.00 0.00 1.00 0.00 0.00 ..........................................................................ACACGGACGTACGAAGAGAACTGTCAC............................................................................................ 27 1 1.00 0.00 0.00 0.00 1.00 0.00 ....................................................................................................................................................................CTAGAAAAGTTCAACTGTT.......... 19 1 1.00 0.00 1.00 0.00 0.00 0.00 ..................................................................................................GAGTGTxTATTGTG--------------TGCCG.............................................................. 18 1 1.00 0.00 0.00 1.00 0.00 0.00 ........................................................................................................GTTTTGTG--------------TGCCGTAGTGTGG-..................................................... 21 1 1.00 1.00 0.00 0.00 0.00 0.00 ......................................................................................................................................................AATTTGTTGCGTCACTAGAAAAG.................... 23 1 1.00 0.00 0.00 0.00 0.00 1.00 ..........................................................................ACACGGACGTACGAAGAGAACTG................................................................................................ 23 1 1.00 0.00 0.00 0.00 0.00 1.00 ...........................................................................CACGGACGTACGAAGAGAACTG................................................................................................ 22 1 1.00 1.00 0.00 0.00 0.00 0.00

droMoj3 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scaffold_6540:26974787-26974936 +	50.1	TG--------CGAAACGTGTTTGATAATGCGCCGCCATCTTGCGGCACACTCGCACACACACACGT-GTGCCATTCTGGT-TTTGCAGTGGTGTGCGTGTG----TGCCTCGAGTCGTTGCGTCACTGGAAAAGTT-----------AGAAAATC TAACATTTTTTCAAACGTGTTCAAT-----GTCGCCATCTTGCGGCTCACGCACACACTCATGCAAGATGTCACACGGGCGTATGAAGAGAACTGTCAGTGTTACTGTGTGAAGTCGTTGCGTCACTAGAAAAGTTCAACGATTTGAAGAAAATT Size Hit Count Total Norm V110 Male body V056 Unknown V049 Head V041 Embryo ..........................................................TCATGCAAGATGTCACAC............................................................................... 18 1 1.00 0.00 0.00 0.00 1.00 .................................................................................................AGTGTTGCTGTGTGAGGTCGT..................................... 21 1 1.00 1.00 0.00 0.00 0.00 .............................................................................GGCGTTTGxAGAGAACTG............................................................ 17 1 1.00 0.00 1.00 0.00 0.00

droGri2 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
2	scaffold_15245:5068344-5068468 +	59.03	TGCGAAACGTGTTTGATAATGCGCCGCCATCTTGC-----GGCACACTCGCACACACACACGTGTGCCATTCTGGTTTTGCAGTGGTGTGCGTGTGTGCCTCGAGTCGTTGCGTCACTGGAAAAGTTAGAAAATC -GCGACAAGTGGTTGAC--TGCACCTGCACCCTCCCAACAGACACACTCACACACACACACACAACCCTCTGTGTGTGTGCAAGTGTGTGTGTGTGTGTGTCAAA-CGCAGCAA--CTGCTGAAGTTTAA----C Size Hit Count Total Norm V109 Male body .........................................................................TTGTGTGCATGTGTGTGTGTG......................................... 21 21 0.14 0.14 ..................................................................................AGTGTGCGTGTGTGTGTGA.................................. 19 22 0.05 0.05 ...........................................................................GCGTGCGAGTGTGTGTGTGTG....................................... 21 6 0.17 0.17 ..............................................................................TGTAAGTGTGTTTGTGTGTG..................................... 20 25 0.04 0.04 ..........................................................................TGTGTGGCAGTGTGTGTGTG......................................... 20 12 0.08 0.08 ..................................................................................AGTGTATGTGTGTGTGTGT.................................. 19 23 0.04 0.04 ...............................................................................GTAAGTGTGTGCGTGTGTGTG................................... 21 15 0.07 0.07 ..................................................................................AGTGTGTGTGTGTGTGTA................................... 18 49 0.02 0.02 .........................................................................GTGTGTGTAAGTGTGTGCG........................................... 19 24 0.04 0.04 ..............................................................................TGCATGTGTGTGTGTGTGTATG................................... 22 40 0.03 0.03 .................................................................................AAATGTGTGTGTGTGTGTGT.................................. 20 41 0.02 0.02 .........................................................................TTGTGTGCATGTGTGTGTGTGT........................................ 22 18 0.06 0.06 ................................................................................CTCGTGTGTGTGTGTGTGT.................................... 19 51 0.02 0.02 ...................................................................................GTGCGTGTGTGTGTGTGTAAA............................... 21 19 0.05 0.05
1	scaffold_14624:3814544-3814729 +	34.05	TGCGA--------AACGTGTTTGATAATGCGCCGCCATCTTGCGGCACACTCGCA----------CACACACACGT-GTGCCATTCTGGT---------------------TTTGCAGTGGTGTGCGTGTGTGC--CTCGAGTCGTTGCGTCACTGGAAA---AGTTAGAAAATC--------------- TATTATTTTCTCCAACGTGTTC---AATGTGTCGCCATCTTGCGGCACATGCACACAGACACACACACACACACAAGATGTCACACGGGCCCGTATGAAGAGAACTGTCAGTTTGTGTCAGTGTGCGTGTGCTTTACTCTA-TTGTTGCGTCACAAGAAACTAAAAAAGAAAATCTCTTTTTGAGCTCAA Size Hit Count Total Norm V109 Male body ..............ACGTGTTC---ACTGTGACGCC.......................................................................................................................................................... 19 1 1.00 1.00 ............................................................................................................................................A-TTGTTGCGTCACAAGAAACTAAAAAAGA.................... 29 1 1.00 1.00

Generated: 04/20/2012 at 05:40:25 EDT